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Search of human proteins with 55770858
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770858 golgi SNAP receptor complex member 1 isoform 2
[Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770858 golgi SNAP receptor complex member 1 isoform 2 [Homo... 487 e-138
gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo ... 482 e-136
gi|55770856 golgi SNAP receptor complex member 1 isoform 3 [Homo... 363 e-100
gi|55770834 centromere protein F [Homo sapiens] 46 3e-05
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 37 0.021
gi|71061468 centromere protein E [Homo sapiens] 33 0.23
gi|50083279 centrosome protein 4 [Homo sapiens] 33 0.23
gi|12597633 RAN binding protein 17 [Homo sapiens] 33 0.23
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 33 0.30
gi|197313728 pleckstrin homology-like domain, family B, member 2... 31 0.88
gi|21955172 pleckstrin homology-like domain, family B, member 2 ... 31 0.88
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo... 31 1.1
gi|7662160 hypothetical protein LOC9813 [Homo sapiens] 30 1.5
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 30 2.0
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 30 2.0
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 30 2.0
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 30 2.0
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 30 2.0
gi|112420968 coiled-coil domain containing 158 [Homo sapiens] 30 2.5
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 30 2.5
gi|155722985 SMC5 protein [Homo sapiens] 30 2.5
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap... 30 2.5
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 30 2.5
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 30 2.5
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 30 2.5
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 29 3.3
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 29 3.3
gi|62899065 centrosomal protein 72 kDa [Homo sapiens] 29 3.3
gi|45827771 autoantigen RCD8 [Homo sapiens] 29 3.3
gi|130980075 centromere protein J [Homo sapiens] 29 4.3
>gi|55770858 golgi SNAP receptor complex member 1 isoform 2 [Homo
sapiens]
Length = 248
Score = 487 bits (1253), Expect = e-138
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSS 60
MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSS
Sbjct: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSS 60
Query: 61 QDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEF 120
QDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEF
Sbjct: 61 QDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEF 120
Query: 121 HKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 180
HKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS
Sbjct: 121 HKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 180
Query: 181 IAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTI 240
IAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTI
Sbjct: 181 IAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTI 240
Query: 241 LLLLYAFH 248
LLLLYAFH
Sbjct: 241 LLLLYAFH 248
>gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo
sapiens]
Length = 250
Score = 482 bits (1240), Expect = e-136
Identities = 248/250 (99%), Positives = 248/250 (99%), Gaps = 2/250 (0%)
Query: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRD--SSDTTPLLNG 58
MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRD SSDTTPLLNG
Sbjct: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNG 60
Query: 59 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 118
SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH
Sbjct: 61 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
Query: 119 EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 178
EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET
Sbjct: 121 EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 180
Query: 179 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 238
ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC
Sbjct: 181 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 240
Query: 239 TILLLLYAFH 248
TILLLLYAFH
Sbjct: 241 TILLLLYAFH 250
>gi|55770856 golgi SNAP receptor complex member 1 isoform 3 [Homo
sapiens]
Length = 185
Score = 363 bits (931), Expect = e-100
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 64 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 123
MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT
Sbjct: 1 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 60
Query: 124 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 183
KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM
Sbjct: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
Query: 184 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 243
ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL
Sbjct: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 180
Query: 244 LYAFH 248
LYAFH
Sbjct: 181 LYAFH 185
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 45.8 bits (107), Expect = 3e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 59 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNA-ALMHTLQRHRDILQDYT 117
S Q R F+T+ E Q+ ARLT ++ + N V L Q+ + L+++
Sbjct: 401 SRQQRSFQTLDQECIQMKARLT---QELQQAKNMHNVLQAELDKLTSVKQQLENNLEEFK 457
Query: 118 HEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----RNSDR 173
+ + + F A + +EN +R+ +E K + + +E +E HL +N +
Sbjct: 458 QKLCRAEQAFQASQIKEN---ELRRSMEEMKKENNLLKSHSEQKAREVCHLEAELKNIKQ 514
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRD 227
+ ++ + A K TSQ ML+ + K+N N + +L K+RD
Sbjct: 515 CLNQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLAVADLEKQRD 568
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 36.6 bits (83), Expect = 0.021
Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 19/241 (7%)
Query: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTR-----DGRRDSSDTTPLLNGS--SQ 61
WE+L+K+A L+ E+ S+ T T+ + DS +L S ++
Sbjct: 454 WEELKKKAAGLQAEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAK 513
Query: 62 DRMFETMAIEIEQLLARL----TGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYT 117
++ + E++ L RL T +N K + + A A +H L+ D+ +
Sbjct: 514 EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKV 573
Query: 118 HEFHKTKANFM-AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEH---DHLRNSDR 173
+ K N +R++E M S+++ ++S ++ + N T L E + R +R
Sbjct: 574 NVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT--TNTDTALTTLEEALAEKERTIER 631
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGG 233
L E+ +E + + + LK + K++ L + + ++L++ SL G
Sbjct: 632 LKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASL--LDLKEHASSLASSG 689
Query: 234 V 234
+
Sbjct: 690 L 690
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 130 IRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENM 189
+ E+E + +++K +E+ + N+ E++ KE ++E ++ KE+
Sbjct: 1500 LSEKETEISTIQKQLEAINDK--LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHR 1557
Query: 190 TSQRGMLKSIHSKMNTLANRFPAVNSLIQ 218
++ L+SI SKM L NR IQ
Sbjct: 1558 KAKDSALQSIESKMLELTNRLQESQEEIQ 1586
Score = 29.6 bits (65), Expect = 2.5
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 30/230 (13%)
Query: 10 EDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRD-------GRRDSSDTTPLLNGSSQD 62
E LRK+ + EL + KL + H +R G+ T N S D
Sbjct: 757 ERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTD 816
Query: 63 RMFE---TMAIEIEQLLARLTGVNDKM-AEYTN----SAGVPSLNAALMHTLQRHRDILQ 114
+ F+ T+ ++ EQ + N++M E N + S AL L LQ
Sbjct: 817 QEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQ 876
Query: 115 DYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRT----ELFLKEHDHLRN 170
+ T E + ++E+ S + +E K+ ++T + +E D L+
Sbjct: 877 EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQ 936
Query: 171 --------SDRL---IEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 209
D+L I +T+++ + T+E + + LK +NTL ++
Sbjct: 937 LQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSK 986
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 33.1 bits (74), Expect = 0.23
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 103 MHTLQRHRDILQDYTHEFHKTKANFMAIRERE------NLMGSVRKDIESYKSGSGVNNR 156
+H LQ +++ ++ K + +RERE L G D+ S +S + N +
Sbjct: 213 VHQLQEKLAMMESGVRDYSKQ----IELREREIERLSVALDGGRSPDVLSLESRNKTNEK 268
Query: 157 RTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSL 216
+ D L+ +++ +E+ I M TKE +TS+ + ++ +K L ++ L
Sbjct: 269 LIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSE---VVNLSNKNEKLCQELTEIDQL 325
Query: 217 IQRINLRK 224
Q++ K
Sbjct: 326 AQQLERHK 333
>gi|12597633 RAN binding protein 17 [Homo sapiens]
Length = 1088
Score = 33.1 bits (74), Expect = 0.23
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 20 ENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIEQLLARL 79
+N D L +F K+ S SHS R+ S PLL +QD M + +E L+ L
Sbjct: 856 DNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFIINLEPPVLMYVL 915
Query: 80 TGVND 84
T +++
Sbjct: 916 TSISE 920
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 32.7 bits (73), Expect = 0.30
Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 63 RMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHK 122
+M + +A + E L +L N K++ S+G R+ +Q+ + +
Sbjct: 1121 KMMDIVAAK-EAALIKLQDENKKLSTRFESSGQDMF-----------RETIQNLSRIIRE 1168
Query: 123 TKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIA 182
A+ ++ + +V + + GVN+ + E L+E D L+ + +EE
Sbjct: 1169 KDIEIDALSQKCQTLLAVLQTSSTGNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQV 1228
Query: 183 MATKENMTSQRGMLK 197
M T +NM + L+
Sbjct: 1229 MTTVQNMQHESAQLQ 1243
>gi|197313728 pleckstrin homology-like domain, family B, member 2
isoform b [Homo sapiens]
Length = 1237
Score = 31.2 bits (69), Expect = 0.88
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 25/177 (14%)
Query: 55 LLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYT-NSAGVPSLNAALMHTLQRHRDIL 113
LL+G + E M + +++L L N K+AE N G + +A L+ +H + L
Sbjct: 655 LLDGEQKSETTELM--KEKEILDHL---NRKIAELEKNIVGEKTKDADLLDVESKHFEDL 709
Query: 114 QDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----- 168
EF + + E+ENL + +++ Y+ + K+ +H+
Sbjct: 710 -----EFQQLEHESRLDEEKENLTQQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQ 764
Query: 169 RNSDRLIEETISIAM---ATKENMTSQRGMLKSIHS------KMNTLANRFPAVNSL 216
R D ++E ++ M KEN+ + S+ NTL + +VN +
Sbjct: 765 REQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLSGGKGFPVNPNTLKEGYISVNEI 821
>gi|21955172 pleckstrin homology-like domain, family B, member 2
isoform c [Homo sapiens]
Length = 1210
Score = 31.2 bits (69), Expect = 0.88
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 25/177 (14%)
Query: 55 LLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYT-NSAGVPSLNAALMHTLQRHRDIL 113
LL+G + E M + +++L L N K+AE N G + +A L+ +H + L
Sbjct: 628 LLDGEQKSETTELM--KEKEILDHL---NRKIAELEKNIVGEKTKDADLLDVESKHFEDL 682
Query: 114 QDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----- 168
EF + + E+ENL + +++ Y+ + K+ +H+
Sbjct: 683 -----EFQQLEHESRLDEEKENLTQQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQ 737
Query: 169 RNSDRLIEETISIAM---ATKENMTSQRGMLKSIHS------KMNTLANRFPAVNSL 216
R D ++E ++ M KEN+ + S+ NTL + +VN +
Sbjct: 738 REQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLSGGKGFPVNPNTLKEGYISVNEI 794
>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 102 LMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELF 161
L + +Q + L+++ H H A R+RE L+ ++ + +
Sbjct: 73 LKYDVQHLQTALRNFQHRRH---AREQQERQREELLS------RTFTTNDSDTTIPMDES 123
Query: 162 LKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRIN 221
L+ + L+ +++ I + + +QR LK K+ +AN N++++ I
Sbjct: 124 LQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIE 183
Query: 222 LRKRRDS-LILGGVIGICTILLLLYAF 247
R +D ++GG++ C ++ L+ +
Sbjct: 184 KRAFQDKYFMIGGMLLTCVVMFLVVQY 210
>gi|7662160 hypothetical protein LOC9813 [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 1.5
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 124 KANFMAIRERENLMGSVRKDIESYKSGS-GVN---------NRRTELFLKEHDHLRNSDR 173
K++F I + + S +K +E +SG G+N N++ L +HL+ + +
Sbjct: 117 KSSFQEIPKLNEELLSKQKQLEKIESGEMGLNKVWINITEMNKQISLLTSAVNHLKANVK 176
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 230
+ IS+ T+ G+ KS+ S NTL + AV +L + ++ K+ L+
Sbjct: 177 SAADLISLP-------TTVEGLQKSVASIGNTLNSVHLAVEALQKTVDEHKKTMELL 226
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 30.0 bits (66), Expect = 2.0
Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 14 KQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIE 73
KQA L E + L + + + + + ++ + LL + ++ E E E
Sbjct: 2050 KQANGLNQENERALGAIQRQVKEINSLQSDFTKYLTTADSSLLQTNIALQLMEKSQKEYE 2109
Query: 74 QLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM- 128
+L A L ++DK+ E + SAG +L+ ++H LQ+ + + K N
Sbjct: 2110 KLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQLEEIKRNASG 2165
Query: 129 ---------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR------NSDR 173
A EN++ +++ ++ + + + +KE + NSD+
Sbjct: 2166 DELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRKAKTLSSNSDK 2225
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 222
L+ E K+ ++ PA+N+L Q +N+
Sbjct: 2226 LLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 2254
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 30.0 bits (66), Expect = 2.0
Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 14 KQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIE 73
KQA L E + L + + + + + ++ + LL + ++ E E E
Sbjct: 385 KQANGLNQENERALGAIQRQVKEINSLQSDFTKYLTTADSSLLQTNIALQLMEKSQKEYE 444
Query: 74 QLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM- 128
+L A L ++DK+ E + SAG +L+ ++H LQ+ + + K N
Sbjct: 445 KLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQLEEIKRNASG 500
Query: 129 ---------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR------NSDR 173
A EN++ +++ ++ + + + +KE + NSD+
Sbjct: 501 DELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRKAKTLSSNSDK 560
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 222
L+ E K+ ++ PA+N+L Q +N+
Sbjct: 561 LLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 589
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 30.0 bits (66), Expect = 2.0
Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 14 KQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIE 73
KQA L E + L + + + + + ++ + LL + ++ E E E
Sbjct: 1994 KQANGLNQENERALGAIQRQVKEINSLQSDFTKYLTTADSSLLQTNIALQLMEKSQKEYE 2053
Query: 74 QLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM- 128
+L A L ++DK+ E + SAG +L+ ++H LQ+ + + K N
Sbjct: 2054 KLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQLEEIKRNASG 2109
Query: 129 ---------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR------NSDR 173
A EN++ +++ ++ + + + +KE + NSD+
Sbjct: 2110 DELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRKAKTLSSNSDK 2169
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 222
L+ E K+ ++ PA+N+L Q +N+
Sbjct: 2170 LLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 2198
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 30.0 bits (66), Expect = 2.0
Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 14 KQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIE 73
KQA L E + L + + + + + ++ + LL + ++ E E E
Sbjct: 441 KQANGLNQENERALGAIQRQVKEINSLQSDFTKYLTTADSSLLQTNIALQLMEKSQKEYE 500
Query: 74 QLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM- 128
+L A L ++DK+ E + SAG +L+ ++H LQ+ + + K N
Sbjct: 501 KLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQLEEIKRNASG 556
Query: 129 ---------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR------NSDR 173
A EN++ +++ ++ + + + +KE + NSD+
Sbjct: 557 DELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRKAKTLSSNSDK 616
Query: 174 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 222
L+ E K+ ++ PA+N+L Q +N+
Sbjct: 617 LLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 645
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 91 NSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSG 150
NS G S + HT+ +HR I+ Y H+ KA F R +V+ I +G
Sbjct: 949 NSKGSTSEKDGMHHTVTKHRGIITLYRHQ----KAAFAITSRRGPTPKAVKAQIADLPAG 1004
Query: 151 SGVN 154
S N
Sbjct: 1005 SSGN 1008
>gi|112420968 coiled-coil domain containing 158 [Homo sapiens]
Length = 1113
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 71 EIEQLLARLTGVNDKMAEYTNSAGVPSLNAA---------LMHTLQRHRDILQDYTHEFH 121
+I +L AR++ + + + N AG L A L++ ++ R L + + E+
Sbjct: 619 KIRELEARVSDLELEKVKLVN-AGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYE 677
Query: 122 KTKANFM-AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIE---- 176
K NF E E ++ ++S +S E + RN+ + +E
Sbjct: 678 VLKRNFRNKSEEMEMTTNKLKMQLKSAQS--------------ELEQTRNTLKSMEGSDG 723
Query: 177 ETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVN 214
+ +AM ++ +T++RG + ++ SK+ L N
Sbjct: 724 HAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
Score = 28.9 bits (63), Expect = 4.3
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 71 EIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAI 130
++E+ +A + G N+ + + V SL A L T + R ++++ T + +++ I
Sbjct: 445 QMERQMAAIQGKNESLEK------VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTI 498
Query: 131 -------RERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 183
+E+E + + +I +S + + + E DHLRN E + + M
Sbjct: 499 SDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC-EALKLQM 557
Query: 184 ATKENM 189
K+ +
Sbjct: 558 TEKDKV 563
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 188
A RE++ L+ V++ + + +++ E KEH HL S++ + E + A K
Sbjct: 952 ARREKQQLL-DVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQARKLK 1010
Query: 189 MTSQRGMLKS 198
+ SQ +L++
Sbjct: 1011 LESQVDLLQA 1020
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 29.6 bits (65), Expect = 2.5
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 131 RERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDH-LRNSDRLIEETISIAMATKENM 189
R E + + + +++ SG + R T L+ D+ LR + + E + ++ +
Sbjct: 653 RHLEEQLKEIHRKLQAVDSGL-IALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKI 711
Query: 190 TSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTIL 241
+S+ G LK + L ++ I+ IN++K + L +I ICT L
Sbjct: 712 SSKLGSLKLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSL 763
>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
sapiens]
Length = 372
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 60 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 119
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 120 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 177
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 178 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 230
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 60 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 119
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 120 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 177
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 178 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 230
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 60 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 119
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 120 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 177
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 178 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 230
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 60 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 119
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 120 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 177
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 178 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 230
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 29.3 bits (64), Expect = 3.3
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 56 LNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLN---------------- 99
+ G R+ T E+E+LL RL G+ D + + V L+
Sbjct: 1003 VRGRRPRRLALTARPELEELLERLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDE 1062
Query: 100 --------AALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENL 136
AA +H LQRHR +L HE + + R+ L
Sbjct: 1063 EEAVRVAAAADVHELQRHRRLLAVELHEADGARRQAQTVHPRQVL 1107
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 29.3 bits (64), Expect = 3.3
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 56 LNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLN---------------- 99
+ G R+ T E+E+LL RL G+ D + + V L+
Sbjct: 1003 VRGRRPRRLALTARPELEELLERLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDE 1062
Query: 100 --------AALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENL 136
AA +H LQRHR +L HE + + R+ L
Sbjct: 1063 EEAVRVAAAADVHELQRHRRLLAVELHEADGARRQAQTVHPRQVL 1107
>gi|62899065 centrosomal protein 72 kDa [Homo sapiens]
Length = 647
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 97 SLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRER-----------ENLMGSVRKDIE 145
SL + L Q+H + + T E H T +R+ ++L+ S++K+++
Sbjct: 483 SLQSRLAEQQQQHAREMSEVTAELHHTHKELDDLRQHLDKSLEENSRLKSLLLSMKKEVK 542
Query: 146 SYKSGSGVNNRRTEL----------------FLKEHDHLRNSDRLIEETISIAMATKENM 189
S + + +N + L L+ +D ++ ++++E+ S ++T E++
Sbjct: 543 SADTAATLNLQIAGLQTSVKRLCGEIVELKQHLEHYDKIQELTQMLQESHSSLVSTNEHL 602
Query: 190 TSQRGMLKSIH 200
+ +++ H
Sbjct: 603 LQELSQVRAQH 613
>gi|45827771 autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 29.3 bits (64), Expect = 3.3
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 60 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 119
SQ+ + + + ++E L + +TG ++ E + L AL QR + + T +
Sbjct: 967 SQEELLQRLCTQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQQ 1026
Query: 120 FHKTKANFMAIRERENLMGSVRKDIESYKS-------GSGVNNRRTELFLKEHDHLRNSD 172
+ ++ +A R ++ ++K + S G N+ T+L E N
Sbjct: 1027 LSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGSMKENIS 1086
Query: 173 RLIEE---TISIAMATKENM 189
+L++ T +IA A + +
Sbjct: 1087 KLLKSKNLTDAIARAAADTL 1106
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 28.9 bits (63), Expect = 4.3
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 113 LQDYTHEFHKTKANFMAIR-ERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNS 171
L+ +F A+ +R ERE+ + +RK+I ++ R E F KE
Sbjct: 913 LETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQK 972
Query: 172 DRLIEETISIAMAT-------------KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQ 218
+R + E + A T K+ + R LK +K ++ +R + ++
Sbjct: 973 ERKVFEKYTTAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLV 1032
Query: 219 RINLRKRRDSLIL 231
R N R + ++
Sbjct: 1033 RENTDLREEIKVM 1045
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,741,099
Number of Sequences: 37866
Number of extensions: 286898
Number of successful extensions: 1079
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 61
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.