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Search of human proteins with 55743094
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55743094 achaete-scute complex homolog 1 [Homo sapiens] 467 e-132
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 143 1e-34
gi|206597481 achaete-scute complex-like 4 [Homo sapiens] 79 4e-15
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 75 5e-14
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 75 5e-14
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 75 5e-14
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 72 4e-13
gi|10190680 ASCL3 [Homo sapiens] 71 7e-13
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 55 5e-08
gi|148922889 scleraxis homolog B [Homo sapiens] 55 7e-08
gi|186972126 scleraxis homolog A [Homo sapiens] 55 7e-08
gi|116517330 factor in the germline alpha [Homo sapiens] 53 2e-07
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 51 8e-07
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 50 2e-06
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 50 2e-06
gi|23111009 myogenic differentiation 1 [Homo sapiens] 50 2e-06
gi|68989258 neurogenin 3 [Homo sapiens] 50 2e-06
gi|31077092 neurogenin 2 [Homo sapiens] 50 2e-06
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 49 3e-06
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 49 3e-06
gi|226498192 atonal homolog 8 [Homo sapiens] 49 5e-06
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 49 5e-06
gi|33286444 mastermind-like 2 [Homo sapiens] 48 6e-06
gi|21553337 atonal homolog 7 [Homo sapiens] 48 6e-06
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 48 8e-06
gi|4505299 myogenic factor 6 [Homo sapiens] 47 1e-05
gi|4507741 twist [Homo sapiens] 47 1e-05
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 47 1e-05
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 47 1e-05
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 47 2e-05
>gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
Length = 236
Score = 467 bits (1201), Expect = e-132
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ 60
MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ
Sbjct: 1 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ 60
Query: 61 QQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAV 120
QQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAV
Sbjct: 61 QQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAV 120
Query: 121 ARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAV 180
ARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAV
Sbjct: 121 ARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAV 180
Query: 181 SAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF 236
SAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF
Sbjct: 181 SAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF 236
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 143 bits (360), Expect = 1e-34
Identities = 89/174 (51%), Positives = 107/174 (61%), Gaps = 33/174 (18%)
Query: 88 RQRSSSPELMRCKRRLN----FSGFGYSLPQQQPAAVARRNERERNRVKLVNLGFATLRE 143
R+R +SPEL+RC RR +G G AAVARRNERERNRVKLVNLGF LR+
Sbjct: 23 RRRPASPELLRCSRRRRPATAETGGG-------AAAVARRNERERNRVKLVNLGFQALRQ 75
Query: 144 HVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAFQAGVLSPTISPNY------ 197
HVP+G A+KK+SKVETLRSAVEYIRALQ+LL EHDAV A G+ + P+
Sbjct: 76 HVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALAGGLRPQAVRPSAPRGPPG 135
Query: 198 ---------------SNDLNSMAGSPVSSYSSDE-GSYDPLSPEEQELLDFTNW 235
+S GSP S+YSSD+ G LSP E+ELLDF++W
Sbjct: 136 TTPVAASPSRASSSPGRGGSSEPGSPRSAYSSDDSGCEGALSPAERELLDFSSW 189
>gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
Length = 173
Score = 78.6 bits (192), Expect = 4e-15
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 116 QPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
+PA + +RNERER RV+ VN G+A LR+H+P A+K++SKVETLR+A++YI+ LQ+LL
Sbjct: 71 EPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL- 129
Query: 176 EHDAVSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEG 217
E A AG + + S+ + + +P S +EG
Sbjct: 130 ERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEG 171
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 116 QPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
+PA + +RNERER RVK VN G+A LR H+P A K++SKVETLR+A+ YI+ LQ+LL
Sbjct: 188 EPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL 246
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 116 QPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
+PA + +RNERER RVK VN G+A LR H+P A K++SKVETLR+A+ YI+ LQ+LL
Sbjct: 188 EPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL 246
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 116 QPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
+PA + +RNERER RVK VN G+A LR H+P A K++SKVETLR+A+ YI+ LQ+LL
Sbjct: 188 EPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL 246
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 72.0 bits (175), Expect = 4e-13
Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 35 AAAAAAAAAAAAAQSAQQQQQQQQQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSP 94
AAAAAAAAAAAA++ + ++ P G P + +P S SP
Sbjct: 21 AAAAAAAAAAAASRCSHEEN---------PYFHGWLIGHP-----EMSPPDYSMALSYSP 66
Query: 95 ELMRCKRRLNFSGFGYSLPQQQPAA------VARR---NERERNRVKLVNLGFATLREHV 145
E L+ S +G P P V RR N +ER R + +N FA LRE +
Sbjct: 67 EYASGAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFAELRECI 126
Query: 146 PNGAANKKMSKVETLRSAVEYIRALQQLL--DEHDAVSAAFQAGVLSPTI-SPNYSNDLN 202
PN A+ K+SK++TLR A YI L LL D+ + + AF+A + + +LN
Sbjct: 127 PNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKKTDVKEEKRKKELN 186
Query: 203 SMAGSPVSS 211
+ S VSS
Sbjct: 187 EILKSTVSS 195
>gi|10190680 ASCL3 [Homo sapiens]
Length = 181
Score = 71.2 bits (173), Expect = 7e-13
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 104 NFSGFGYSLPQQQPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSA 163
N+ G YS PA +RNERER RVK VN G+A LR H+P K++SKVETLR+A
Sbjct: 82 NYRGCEYSYG---PAFTRKRNERERQRVKCVNEGYAQLRHHLPEEYLEKRLSKVETLRAA 138
Query: 164 VEYIRALQQLL 174
++YI LQ LL
Sbjct: 139 IKYINYLQSLL 149
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 55.1 bits (131), Expect = 5e-08
Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 13 GQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQQQAPQLRPAADG 72
G+ P P P P A AAAAAAAAAAAA +AQQQQQQQQQQQQ Q +
Sbjct: 67 GRSPGPPP--PVGVKTVALSAKEAAAAAAAAAAAAAAAQQQQQQQQQQQQQQQQQQQQQQ 124
Query: 73 QPSGGGHKSAPKQVKR-QRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARRNERERNRV 131
Q +Q+ SS P ++ L +G S AA A E +R+R
Sbjct: 125 Q----------QQLNHVDGSSKPAVLAAPSGL--ERYGLSAAAAAAAAAAAAVE-QRSRF 171
Query: 132 KL----VNLGFATLREHVPNG 148
+ V+LG ++ +PNG
Sbjct: 172 EYPPPPVSLGSSSHTARLPNG 192
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 54.7 bits (130), Expect = 7e-08
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 64 PQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARR 123
P++ P ++ + G + ++ R ++ L +RR G P +P R+
Sbjct: 17 PEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQ 76
Query: 124 ----NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
N RER+R VN F LR +P A++K+SK+ETLR A YI L +L
Sbjct: 77 RHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 54.7 bits (130), Expect = 7e-08
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 64 PQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARR 123
P++ P ++ + G + ++ R ++ L +RR G P +P R+
Sbjct: 17 PEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQ 76
Query: 124 ----NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
N RER+R VN F LR +P A++K+SK+ETLR A YI L +L
Sbjct: 77 RHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 53.1 bits (126), Expect = 2e-07
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 86 VKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARR---NERERNRVKLVNLGFATLR 142
++ Q P+L R GYS + + RR N +ER R+K +N GFA L+
Sbjct: 30 LREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLK 89
Query: 143 EHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
VP ++K SKV+ L+ A EYI+ L LL+
Sbjct: 90 ALVPFLPQSRKPSKVDILKGATEYIQVLSDLLE 122
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 51.2 bits (121), Expect = 8e-07
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 71 DGQPSGGGHKSAPKQVKRQRSSSPELMRC------KRRLNFSGFGYSLPQQQPAAVARR- 123
+G P G P+ K RS +RR SG G ++ +++ RR
Sbjct: 23 EGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPG----GRRDSSIQRRL 78
Query: 124 --NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRAL 170
NERER R+ +N F LRE +P+ A+KK+SK+ETL A YI++L
Sbjct: 79 ESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSL 127
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 50.1 bits (118), Expect = 2e-06
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)
Query: 2 ESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQQ 61
+ + + G A P P P PA A A+ ++ + ++++
Sbjct: 26 DDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEE 85
Query: 62 QAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVA 121
+ + +G G + + K+++ + L R K R
Sbjct: 86 EEEE----EEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQ----------------- 124
Query: 122 RRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
+ N RERNR+ +N LR+ VP + +K+SK+ETLR A YI AL ++L
Sbjct: 125 KANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 177
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 50.1 bits (118), Expect = 2e-06
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 116 QPAAVARR---NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQ 172
QP VARR N RER R + VN FA LR+ +P ++K+SK E LR A++YI L +
Sbjct: 145 QPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVR 204
Query: 173 LLDEHDAVSAA 183
LL + A AA
Sbjct: 205 LLRDQAAALAA 215
>gi|23111009 myogenic differentiation 1 [Homo sapiens]
Length = 320
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 126 RERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAFQ 185
RER R+ VN F TL+ + N+++ KVE LR+A+ YI LQ LL + DA
Sbjct: 117 RERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAA 175
Query: 186 AGVLSPTISP------NYSNDLNSMAGSPVSSYSSDEGSY 219
A +P P +YS D S A SP S+ S Y
Sbjct: 176 AAFYAPGPLPPGRGGEHYSGD--SDASSPRSNCSDGMMDY 213
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 49.7 bits (117), Expect = 2e-06
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 77 GGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARRNERERNRVKLVNL 136
GG + AP++++ +R R K L +L +Q+ + + N+RERNR+ +N
Sbjct: 52 GGCRGAPRKLRARRGGRS---RPKSEL-------ALSKQRRSRRKKANDRERNRMHNLNS 101
Query: 137 GFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAFQAGVLSPTISPN 196
LR +P + K++K+ETLR A YI AL Q L D A +
Sbjct: 102 ALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSLYALEP-------PAP 154
Query: 197 YSNDLNSMAGSP---VSSYS--SDEGSYDPLSPEEQ 227
+ +L S GSP S YS S GS P + E+
Sbjct: 155 HCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEE 190
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 49.7 bits (117), Expect = 2e-06
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%)
Query: 34 TAAAAAAAAAAAAAQSAQQQQQQQQQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSS 93
+A+ A AA ++ + ++++++ A + R A GQ + GG + + + R
Sbjct: 22 SASPALAALTPLSSSADEEEEEEPGASGGARRQRGAEAGQGARGGVAAGAEGCRPARLLG 81
Query: 94 PELMRCKRRLN----FSGFGYSLPQQQPAAVARR---NERERNRVKLVNLGFATLREHVP 146
+ CKRR + S + Q RR N RERNR+ +N LRE +P
Sbjct: 82 L-VHDCKRRPSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLP 140
Query: 147 NGAANKKMSKVETLRSAVEYIRALQQLLDEHD--------AVSAAFQAGVLSPTISPNYS 198
+ K++K+ETLR A YI AL + L D A F VL +SP +
Sbjct: 141 TFPEDAKLTKIETLRFAHNYIWALTETLRLADHCGGGGGGLPGALFSEAVL---LSPGGA 197
Query: 199 NDLNSMAG---SPVSSYS 213
+ S +G SP S++S
Sbjct: 198 SAALSSSGDSPSPASTWS 215
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 49.3 bits (116), Expect = 3e-06
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 125 ERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAF 184
++ER R + +N FA LRE +PN A+ K+SK++TLR A YI L +L + DA S
Sbjct: 101 KKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAK-DAQSGDP 159
Query: 185 QAGVLSPTISPNYSNDLNSMAGSPVSSYSSD----EGSYDPLSPEEQELLDFTNW 235
+A + +L G S + EG L P E+ + T W
Sbjct: 160 EA----------FKAELKKADGGRESKRKRELQQHEGFPPALGPVEKRIKGRTGW 204
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 49.3 bits (116), Expect = 3e-06
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 69 AADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARRNE--- 125
A G P GGG P+ + R L R +RR +++ A R
Sbjct: 35 AGPGGP-GGGQARGPEPGEPGRKDLQHLSREERR-----------RRRRATAKYRTAHAT 82
Query: 126 RERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
RER RV+ NL FA LR+ +P +KK+SK+E LR A+ YI L +LD
Sbjct: 83 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 132
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 48.5 bits (114), Expect = 5e-06
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 2/160 (1%)
Query: 16 PQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQQQAPQLRPAADGQPS 75
P PQ Q P P A F A A+ A ++ +RPA +P
Sbjct: 130 PAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPEST-VRPAPPTRPG 188
Query: 76 GGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARRNERERNRVKLVN 135
+ S + S R KR + + Q N RER RV ++
Sbjct: 189 ESSYSSISHVIYNNHQDSSASPR-KRPGEATAASSEIKALQQTRRLLANARERTRVHTIS 247
Query: 136 LGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
F LR+ VP + +K+SK+ LR A YI +L +L D
Sbjct: 248 AAFEALRKQVPCYSYGQKLSKLAILRIACNYILSLARLAD 287
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 48.5 bits (114), Expect = 5e-06
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 63 APQLRPAADGQPSGGGHKSAP-KQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVA 121
+P P+ P G +P +++ ++ R +RR+ L Q + AA
Sbjct: 114 SPGSPPSCLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEA---ELQQLRQAA-- 168
Query: 122 RRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
N RER R++ +N F LR H+P K++SKV+TLR A+ YI L +L+
Sbjct: 169 --NVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELV 219
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 48.1 bits (113), Expect = 6e-06
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 14 QQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQQQAPQLRPAADGQ 73
QQ Q Q QQ + ++ +A Q QQQQQQQQQQQQ Q + Q
Sbjct: 606 QQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQ 665
Query: 74 PSGGGHKSAPKQVKRQRSSSP----ELMRCKRRLNFSGFGYSLPQQQ 116
PS +S P Q RS P L++ + +G GY + QQQ
Sbjct: 666 PSSQPAQSLPSQ-PLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQ 711
Score = 35.8 bits (81), Expect = 0.033
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 48 QSAQQQQQQQQQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPE 95
Q QQQQQQQQQQQQ Q + Q SA +Q ++Q S S +
Sbjct: 592 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQ 639
Score = 35.8 bits (81), Expect = 0.033
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 48 QSAQQQQQQQQQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSG 107
Q QQQQQQQQQQQQ Q +A Q SA +Q ++Q+ + + +++
Sbjct: 604 QQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQ----- 658
Query: 108 FGYSLPQQQPAA 119
QQQP++
Sbjct: 659 --QQQQQQQPSS 668
Score = 35.0 bits (79), Expect = 0.056
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 48 QSAQQQQQQQQQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSS 93
Q QQQQQQQQQQQQ Q + Q S Q ++Q+ SS
Sbjct: 590 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSS 635
Score = 32.3 bits (72), Expect = 0.36
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 48 QSAQQQQQQQQQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSG 107
Q QQQQQQQQQQQQ Q + Q +Q ++Q+SS + +++ + S
Sbjct: 588 QQQQQQQQQQQQQQQQQQQQQQQQQQ---------QQQQQQQQSSISAQQQQQQQSSISA 638
Query: 108 FGYSLPQQQPAAVARRNERERNR 130
QQQ ++ ++++ +
Sbjct: 639 QQQQQQQQQQQQQQQQQQQQQQQ 661
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 48.1 bits (113), Expect = 6e-06
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 124 NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDE 176
N RER R++ +N F LR VP +KK+SK ETL+ A+ YI AL ++L E
Sbjct: 46 NARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAE 98
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 47.8 bits (112), Expect = 8e-06
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 117 PAAVARR----NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQ 172
P V R+ N RER+R + VN F LR +P ++K+SK+ETLR A YI L
Sbjct: 67 PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLAN 126
Query: 173 LL---DEHDAVSAAFQA 186
+L D D F+A
Sbjct: 127 VLLLGDSADDGQPCFRA 143
>gi|4505299 myogenic factor 6 [Homo sapiens]
Length = 242
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/140 (32%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 65 QLRPAADGQPSGGGHKSAPKQVKRQRSSSPELM----RCKRRLNFSGFGYSLPQQQPAAV 120
Q+ P A SG H AP ++ L+ CKR+ S P + A
Sbjct: 47 QMPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRK--------SAPTDRRKAA 98
Query: 121 ARRNERERNRVKLVNLGFATL-REHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA 179
R ER R+K +N F L R V N N+++ KVE LRSA+ YI LQ LL D
Sbjct: 99 TLR---ERRRLKKINEAFEALKRRTVAN--PNQRLPKVEILRSAISYIERLQDLLHRLDQ 153
Query: 180 VSAAFQAGVLSPTISPNYSN 199
+ GV + P N
Sbjct: 154 QEKMQELGVDPFSYRPKQEN 173
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 47.4 bits (111), Expect = 1e-05
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 69 AADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSL-----PQQQPAAVARR 123
AA G GG +P Q KR + S+ C G G S PQ +R
Sbjct: 55 AAGGGVGGGDEPGSPAQGKRGKKSAG----CGGGGGAGGGGGSSSGGGSPQSYEELQTQR 110
Query: 124 ---NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL--DEHD 178
N RER R + +N FA LR+ +P + K+SK++TL+ A YI L Q+L DE D
Sbjct: 111 VMANVRERQRTQSLNEAFAALRKIIPT-LPSDKLSKIQTLKLAARYIDFLYQVLQSDELD 169
Query: 179 AVSAA 183
+ A+
Sbjct: 170 SKMAS 174
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 126 RERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
RER RV+ NL FA LR+ +P +KK+SK+E LR A+ YI L +LD
Sbjct: 85 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 126 RERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
RER RV+ NL FA LR+ +P +KK+SK+E LR A+ YI L +LD
Sbjct: 85 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 124 NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDE 176
N RER R + VN FA LR+ +P +KK+SK ETLR A+ YI L ++L E
Sbjct: 8 NTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.123 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,877,572
Number of Sequences: 37866
Number of extensions: 479572
Number of successful extensions: 10927
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 5008
Number of HSP's gapped (non-prelim): 3028
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.