Search of human proteins with 54792071

Search of human proteins with 54792071

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
         (71 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre...   147   2e-36
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre...   134   2e-32
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ...   125   5e-30
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ...   125   5e-30
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h...   124   1e-29
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens]    121   1e-28
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif...   118   1e-27
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ...   118   1e-27
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ...   118   1e-27
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif...   118   1e-27
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]     117   3e-27
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]            102   8e-23
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]            102   8e-23
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]            102   8e-23
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre...    58   1e-09
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec...    58   1e-09
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre...    47   3e-06
gi|148536855 coatomer protein complex, subunit alpha isoform 1 [...    33   0.037
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [...    33   0.037
gi|119120884 fer-1-like 6 [Homo sapiens]                               28   2.0  
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo...    27   2.6  

>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
          precursor [Homo sapiens]
          Length = 71

 Score =  147 bits (371), Expect = 2e-36
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
          MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI
Sbjct: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60

Query: 61 DVFQQQTGGVY 71
          DVFQQQTGGVY
Sbjct: 61 DVFQQQTGGVY 71


>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
          precursor [Homo sapiens]
          Length = 95

 Score =  134 bits (336), Expect = 2e-32
 Identities = 71/95 (74%), Positives = 71/95 (74%), Gaps = 24/95 (25%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER---------- 50
          MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER          
Sbjct: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60

Query: 51 --------------QLEMEDEDTIDVFQQQTGGVY 71
                        QLEMEDEDTIDVFQQQTGGVY
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95


>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
           homolog 2 [Homo sapiens]
          Length = 206

 Score =  125 bits (315), Expect = 5e-30
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
           +ADEKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY   QLEMEDEDT 
Sbjct: 136 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 195

Query: 61  DVFQQQTGGVY 71
           D+FQQQ+GGVY
Sbjct: 196 DMFQQQSGGVY 206


>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
           sapiens]
          Length = 164

 Score =  125 bits (315), Expect = 5e-30
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
           +ADEKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY   QLEMEDEDT 
Sbjct: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153

Query: 61  DVFQQQTGGVY 71
           D+FQQQ+GGVY
Sbjct: 154 DMFQQQSGGVY 164


>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
          homolog 2 [Homo sapiens]
          Length = 70

 Score =  124 bits (312), Expect = 1e-29
 Identities = 62/71 (87%), Positives = 66/71 (92%), Gaps = 1/71 (1%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
          MAD+KP+EGVKT+NN HINLKV GQ GSVVQFKIKRHTPLSKLMKAYCE QLEME+EDTI
Sbjct: 1  MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59

Query: 61 DVFQQQTGGVY 71
          DVFQQQ GGVY
Sbjct: 60 DVFQQQMGGVY 70


>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
          sapiens]
          Length = 103

 Score =  121 bits (304), Expect = 1e-28
 Identities = 67/94 (71%), Positives = 69/94 (73%), Gaps = 25/94 (26%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER---------- 50
          M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER          
Sbjct: 1  MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59

Query: 51 --------------QLEMEDEDTIDVFQQQTGGV 70
                        QLEMEDEDTIDVFQQQTGGV
Sbjct: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93


>gi|239754793 PREDICTED: similar to Small ubiquitin-related
          modifier 2 [Homo sapiens]
          Length = 103

 Score =  118 bits (295), Expect = 1e-27
 Identities = 57/68 (83%), Positives = 60/68 (88%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
          MA++   EGVKTENNDHINLKV GQD SVVQFKIKRHTPLSKLM AYC+ QLEMEDE TI
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 61 DVFQQQTG 68
          DVFQQQTG
Sbjct: 61 DVFQQQTG 68


>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
          sapiens]
          Length = 103

 Score =  118 bits (295), Expect = 1e-27
 Identities = 57/68 (83%), Positives = 60/68 (88%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
          MA++   EGVKTENNDHINLKV GQD SVVQFKIKRHTPLSKLM AYC+ QLEMEDE TI
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 61 DVFQQQTG 68
          DVFQQQTG
Sbjct: 61 DVFQQQTG 68


>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
          sapiens]
          Length = 103

 Score =  118 bits (295), Expect = 1e-27
 Identities = 57/68 (83%), Positives = 60/68 (88%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
          MA++   EGVKTENNDHINLKV GQD SVVQFKIKRHTPLSKLM AYC+ QLEMEDE TI
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 61 DVFQQQTG 68
          DVFQQQTG
Sbjct: 61 DVFQQQTG 68


>gi|239509111 PREDICTED: similar to Small ubiquitin-related
          modifier 2 [Homo sapiens]
          Length = 103

 Score =  118 bits (295), Expect = 1e-27
 Identities = 57/68 (83%), Positives = 60/68 (88%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
          MA++   EGVKTENNDHINLKV GQD SVVQFKIKRHTPLSKLM AYC+ QLEMEDE TI
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 61 DVFQQQTG 68
          DVFQQQTG
Sbjct: 61 DVFQQQTG 68


>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
          Length = 95

 Score =  117 bits (292), Expect = 3e-27
 Identities = 64/95 (67%), Positives = 66/95 (69%), Gaps = 24/95 (25%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE----------- 49
          MA+EKP E VKTENN+HINLKVAGQDGSVVQFKIKR TPLSKLMKAYCE           
Sbjct: 1  MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60

Query: 50 -------------RQLEMEDEDTIDVFQQQTGGVY 71
                        QLEMEDEDTIDVFQQ TGGVY
Sbjct: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95


>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score =  102 bits (253), Expect = 8e-23
 Identities = 48/49 (97%), Positives = 48/49 (97%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49
          MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score =  102 bits (253), Expect = 8e-23
 Identities = 48/49 (97%), Positives = 48/49 (97%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49
          MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score =  102 bits (253), Expect = 8e-23
 Identities = 48/49 (97%), Positives = 48/49 (97%)

Query: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49
          MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
          precursor [Homo sapiens]
          Length = 101

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 28/97 (28%)

Query: 1  MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ----- 51
          M+D++ K   +     +  ++I LKV GQD S + FK+K  T L KL ++YC+RQ     
Sbjct: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 52 -------------------LEMEDEDTIDVFQQQTGG 69
                             L ME+ED I+V+Q+QTGG
Sbjct: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97


>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
          precursor [Homo sapiens]
          Length = 101

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 28/97 (28%)

Query: 1  MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ----- 51
          M+D++ K   +     +  ++I LKV GQD S + FK+K  T L KL ++YC+RQ     
Sbjct: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 52 -------------------LEMEDEDTIDVFQQQTGG 69
                             L ME+ED I+V+Q+QTGG
Sbjct: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97


>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
          precursor [Homo sapiens]
          Length = 76

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 24/72 (33%)

Query: 22 VAGQDGSVVQFKIKRHTPLSKLMKAYCERQ------------------------LEMEDE 57
          ++ QD S + FK+K  T L KL ++YC+RQ                        L ME+E
Sbjct: 1  MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE 60

Query: 58 DTIDVFQQQTGG 69
          D I+V+Q+QTGG
Sbjct: 61 DVIEVYQEQTGG 72


>gi|148536855 coatomer protein complex, subunit alpha isoform 1
           [Homo sapiens]
          Length = 1233

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 18/87 (20%)

Query: 3   DEKPKEGVKTENNDH-----------INLKVAGQDGSVVQFKIKRHTP-------LSKLM 44
           D   + GV+T   DH           +NL  AG DG ++ FK++R  P       +   +
Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYV 336

Query: 45  KAYCERQLEMEDEDTIDVFQQQTGGVY 71
           K    RQL+      + V Q ++G  +
Sbjct: 337 KDRFLRQLDFNSSKDVAVMQLRSGSKF 363


>gi|148536853 coatomer protein complex, subunit alpha isoform 2
           [Homo sapiens]
          Length = 1224

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 18/87 (20%)

Query: 3   DEKPKEGVKTENNDH-----------INLKVAGQDGSVVQFKIKRHTP-------LSKLM 44
           D   + GV+T   DH           +NL  AG DG ++ FK++R  P       +   +
Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYV 336

Query: 45  KAYCERQLEMEDEDTIDVFQQQTGGVY 71
           K    RQL+      + V Q ++G  +
Sbjct: 337 KDRFLRQLDFNSSKDVAVMQLRSGSKF 363


>gi|119120884 fer-1-like 6 [Homo sapiens]
          Length = 1857

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
           ++ E P+E +KT  +D I+   A    +  + K+   T L K     C ++LE   ++  
Sbjct: 620 ISQEAPEEKMKTVLSDFISRSSAFISEAEKKPKMLNQTTLDKKRLTLCWQELEAMCKEAK 679

Query: 61  DVFQQQ 66
            + QQQ
Sbjct: 680 GIIQQQ 685


>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
           [Homo sapiens]
          Length = 666

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 2   ADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTID 61
           +DE+ +     E  DH +    G D      ++KR   ++   +A  + ++  ++  T+D
Sbjct: 254 SDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMD 313

Query: 62  VF 63
           +F
Sbjct: 314 LF 315


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,638,810
Number of Sequences: 37866
Number of extensions: 84033
Number of successful extensions: 182
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 21
length of query: 71
length of database: 18,247,518
effective HSP length: 44
effective length of query: 27
effective length of database: 16,581,414
effective search space: 447698178
effective search space used: 447698178
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.