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Search of human proteins with 54112121
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]
(1217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens] 2434 0.0
gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo ... 217 6e-56
gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens] 217 6e-56
gi|56676371 cleavage and polyadenylation specific factor 1, 160k... 77 1e-13
gi|100815815 tumor necrosis factor, alpha-induced protein 9 [Hom... 32 2.8
gi|14195607 protocadherin beta 1 precursor [Homo sapiens] 32 2.8
gi|153945852 G7c protein [Homo sapiens] 32 3.7
gi|4557461 nicotinic acetylcholine receptor delta polypeptide pr... 31 8.2
gi|117168279 ovary-specific acidic protein [Homo sapiens] 31 8.2
gi|154124881 kinesin family member 25 isoform 2 [Homo sapiens] 31 8.2
gi|154124879 kinesin family member 25 isoform 1 [Homo sapiens] 31 8.2
gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens] 31 8.2
gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens] 31 8.2
>gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]
Length = 1217
Score = 2434 bits (6308), Expect = 0.0
Identities = 1217/1217 (100%), Positives = 1217/1217 (100%)
Query: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
Sbjct: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 361 IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT 420
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
Sbjct: 361 IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT 420
Query: 421 PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN 480
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
Sbjct: 421 PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN 480
Query: 481 ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG 540
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
Sbjct: 481 ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG 540
Query: 541 KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ 600
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
Sbjct: 541 KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ 600
Query: 601 RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI 660
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
Sbjct: 601 RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI 660
Query: 661 GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW 720
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
Sbjct: 661 GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW 720
Query: 721 LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP 780
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
Sbjct: 721 LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP 780
Query: 781 LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA 840
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
Sbjct: 781 LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA 840
Query: 841 AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG 900
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
Sbjct: 841 AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG 900
Query: 901 EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL 960
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
Sbjct: 901 EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL 960
Query: 961 IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ 1020
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
Sbjct: 961 IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ 1020
Query: 1021 LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG 1080
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
Sbjct: 1021 LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG 1080
Query: 1081 LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF 1140
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
Sbjct: 1081 LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF 1140
Query: 1141 FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT 1200
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
Sbjct: 1141 FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT 1200
Query: 1201 PPEVSKKLEDIRTRYAF 1217
PPEVSKKLEDIRTRYAF
Sbjct: 1201 PPEVSKKLEDIRTRYAF 1217
>gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo
sapiens]
Length = 1140
Score = 217 bits (552), Expect = 6e-56
Identities = 285/1226 (23%), Positives = 489/1226 (39%), Gaps = 150/1226 (12%)
Query: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILEL-------LRPDPNTGKVHTLLTV 56
Y +T Q+ T ++ + G+F+ + +++++ LE+ LRP G
Sbjct: 5 YVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVG-------- 56
Query: 57 EVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKI---HQETFGKSGCR 113
++G I + FR G +KD + + + ILEY+ S + I H + G R
Sbjct: 57 -MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-R 114
Query: 114 RIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGV 173
G +DP+ R + + + V L+RD + L+A HV+
Sbjct: 115 PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRD-------NKELKAFNIRLEELHVI-- 165
Query: 174 DVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGN 233
DV F ++ C DP G + +L E + G E +E +
Sbjct: 166 DVKF---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG-----PWKQENVEAEAS 217
Query: 234 FLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATH 293
+I VP + G +I + ITY N I PI ++ VC
Sbjct: 218 MVIAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQST----------IVCHNRV 264
Query: 294 KTKSMFFFLAQTEQGDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLF 348
+ L E G +F + LE +E M + ++R++ +A + L G +F
Sbjct: 265 DPNGSRYLLGDME-GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVF 323
Query: 349 VASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPIL 408
V S G+ L ++ D +E+ + AM +TF +L PI+
Sbjct: 324 VGSRLGDSQLVKLNV--DSNEQGSYVVAM-----ETF----------------TNLGPIV 360
Query: 409 FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIED 468
+ DL + QL G SLR++R+G+ + E A +LPG +W +R
Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNR 419
Query: 469 EFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHI 527
E D +++SFV T VL + GE VEE GF+ T C + L+Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 528 RADKR--VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSA 585
+ + V+EWK P K I + N QVV+A+ G L Y ++ P +L + + EM
Sbjct: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHT-EMEH 536
Query: 586 DVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVE 644
+V C+ + + S A+GL D + RI+ L PS L M P S+ +
Sbjct: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTT 595
Query: 645 MGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRV 704
+ YL L +G L L+ TG LSD + LG++P L
Sbjct: 596 FESSH--------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 705 RMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
R V A S R + YS + + ++ + + + S+ P+ + + +TL I
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 765 LALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET-----DHNAYTEATKAQRKQQM 819
++++ + + PL +PRK S ++ + D + T A + Q
Sbjct: 702 GTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
Query: 820 AEEMVEAAGEDERELAAEMAAAFLNENLP-ESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878
V + + F + P E+ FG + + +++ L
Sbjct: 761 LSSSVSS------------SKLFSSSTAPHETSFGEEVEVHN-----LLIIDQHTFEVLH 803
Query: 879 LVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGF-VYTYKLVNNGEKL 937
Q QNE A S+ C+ + Y +VG A G V+ Y + KL
Sbjct: 804 AHQFLQNEYALSLVSCKLGK-DPNTYFIVGTAMVYPEEAEPKQGRIVVFQY----SDGKL 858
Query: 938 EFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-GIQTI 996
+ + + V+ ++ F G++L + +R+Y+ +K LR E H N ++ ++T
Sbjct: 859 QTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTK 917
Query: 997 GHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV 1056
G ++V D+ S + + YK E A D P W++ +LD D GA+ N+ V
Sbjct: 918 GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 977
Query: 1057 RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSES 1116
+ + + L+ G ++M ++GET Q S
Sbjct: 978 QKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-NLGETSTPTQ---------GS 1027
Query: 1117 LVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYF-----PVK 1171
+++ T++G IG LV S ++ ++ L + +H +RS++ P
Sbjct: 1028 VLFGTVNGMIG-LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086
Query: 1172 NVIDGDLCEQFNSMEPNKQKNVSEEL 1197
IDGDL E F + K + V L
Sbjct: 1087 GFIDGDLIESFLDISRPKMQEVVANL 1112
>gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]
Length = 1140
Score = 217 bits (552), Expect = 6e-56
Identities = 285/1226 (23%), Positives = 489/1226 (39%), Gaps = 150/1226 (12%)
Query: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILEL-------LRPDPNTGKVHTLLTV 56
Y +T Q+ T ++ + G+F+ + +++++ LE+ LRP G
Sbjct: 5 YVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVG-------- 56
Query: 57 EVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKI---HQETFGKSGCR 113
++G I + FR G +KD + + + ILEY+ S + I H + G R
Sbjct: 57 -MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-R 114
Query: 114 RIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGV 173
G +DP+ R + + + V L+RD + L+A HV+
Sbjct: 115 PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRD-------NKELKAFNIRLEELHVI-- 165
Query: 174 DVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGN 233
DV F ++ C DP G + +L E + G E +E +
Sbjct: 166 DVKF---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG-----PWKQENVEAEAS 217
Query: 234 FLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATH 293
+I VP + G +I + ITY N I PI ++ VC
Sbjct: 218 MVIAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQST----------IVCHNRV 264
Query: 294 KTKSMFFFLAQTEQGDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLF 348
+ L E G +F + LE +E M + ++R++ +A + L G +F
Sbjct: 265 DPNGSRYLLGDME-GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVF 323
Query: 349 VASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPIL 408
V S G+ L ++ D +E+ + AM +TF +L PI+
Sbjct: 324 VGSRLGDSQLVKLNV--DSNEQGSYVVAM-----ETF----------------TNLGPIV 360
Query: 409 FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIED 468
+ DL + QL G SLR++R+G+ + E A +LPG +W +R
Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNR 419
Query: 469 EFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHI 527
E D +++SFV T VL + GE VEE GF+ T C + L+Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 528 RADKR--VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSA 585
+ + V+EWK P K I + N QVV+A+ G L Y ++ P +L + + EM
Sbjct: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHT-EMEH 536
Query: 586 DVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVE 644
+V C+ + + S A+GL D + RI+ L PS L M P S+ +
Sbjct: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTT 595
Query: 645 MGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRV 704
+ YL L +G L L+ TG LSD + LG++P L
Sbjct: 596 FESSH--------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 705 RMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
R V A S R + YS + + ++ + + + S+ P+ + + +TL I
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 765 LALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET-----DHNAYTEATKAQRKQQM 819
++++ + + PL +PRK S ++ + D + T A + Q
Sbjct: 702 GTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
Query: 820 AEEMVEAAGEDERELAAEMAAAFLNENLP-ESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878
V + + F + P E+ FG + + +++ L
Sbjct: 761 LSSSVSS------------SKLFSSSTAPHETSFGEEVEVHN-----LLIIDQHTFEVLH 803
Query: 879 LVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGF-VYTYKLVNNGEKL 937
Q QNE A S+ C+ + Y +VG A G V+ Y + KL
Sbjct: 804 AHQFLQNEYALSLVSCKLGK-DPNTYFIVGTAMVYPEEAEPKQGRIVVFQY----SDGKL 858
Query: 938 EFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-GIQTI 996
+ + + V+ ++ F G++L + +R+Y+ +K LR E H N ++ ++T
Sbjct: 859 QTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTK 917
Query: 997 GHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV 1056
G ++V D+ S + + YK E A D P W++ +LD D GA+ N+ V
Sbjct: 918 GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 977
Query: 1057 RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSES 1116
+ + + L+ G ++M ++GET Q S
Sbjct: 978 QKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-NLGETSTPTQ---------GS 1027
Query: 1117 LVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYF-----PVK 1171
+++ T++G IG LV S ++ ++ L + +H +RS++ P
Sbjct: 1028 VLFGTVNGMIG-LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086
Query: 1172 NVIDGDLCEQFNSMEPNKQKNVSEEL 1197
IDGDL E F + K + V L
Sbjct: 1087 GFIDGDLIESFLDISRPKMQEVVANL 1112
>gi|56676371 cleavage and polyadenylation specific factor 1, 160kDa
[Homo sapiens]
Length = 1443
Score = 76.6 bits (187), Expect = 1e-13
Identities = 136/667 (20%), Positives = 249/667 (37%), Gaps = 122/667 (18%)
Query: 12 TGISFAIHGNFSGTKQQEIVVSRGKIL----------ELLRPDPNT-GKVHT-----LLT 55
TG+ F+++ NF ++ +VV+ L L + D +T GK H +
Sbjct: 12 TGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLELAAS 71
Query: 56 VEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFG----KSG 111
FG + S+ + +L G +D +++ ++ ++EY P + + + F + G
Sbjct: 72 FSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDG 131
Query: 112 CRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVV 171
+ V + VDP GR + + +V R++ A E +++ L +++
Sbjct: 132 FVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFLPSYII 191
Query: 172 GVDVGFENPMFACLEMDYEEADNDPT------------GEAAANTQQTLTFYELDLGLNH 219
V + + +++ + +PT G A Q T + + L +
Sbjct: 192 DVRA-LDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVR-QDTCSIVAISLNITQ 249
Query: 220 VVRKY-----SEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRR 274
V S P + + P G GV++ + N + Y N P
Sbjct: 250 KVHPVIWSLTSLPFDCTQALAVPKPIG-----GVVVFAVNSLLYLNQSVPPYGVALNSLT 304
Query: 275 RNDLDDPERGMIFVCSATHKTKSMFF----FLAQTEQGDIFKITLETDEDMVTEIRLKYF 330
P R V ++ F + + G+I+ +TL TD + +R +F
Sbjct: 305 TGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDG--MRSVRAFHF 362
Query: 331 DTVPVAA---AMCVLKTGFLFVASEFGNHYLYQ------------IAHLGDDDEEPE--- 372
D + +M ++ G+LF+ S GN L + + D +E P
Sbjct: 363 DKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKK 422
Query: 373 ----------FSSAMPLEEGDTFFFQPRPLKN--------LVLVDELDSLSPILFCQIAD 414
++P +E D ++ + D + ++ P + +
Sbjct: 423 RVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGE 482
Query: 415 LA-------NEDTPQL--YVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTV--- 462
A N P L V G G +L VL+ + + ELPG + +WTV
Sbjct: 483 PAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAP 541
Query: 463 -RRHIED---------------EFD------AYIIVSFVNATLVLSIGETVEEVTDSGFL 500
R+ ED E D ++I+S ++T++L G+ + E+ SGF
Sbjct: 542 VRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFA 601
Query: 501 GTTPTLSCSLLGDDA-LVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALT 559
PT+ +GD+ +VQV P GIR + +++ IV+CAV VVI
Sbjct: 602 TQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMSA 661
Query: 560 GGELVYF 566
G + F
Sbjct: 662 EGHVTMF 668
Score = 41.6 bits (96), Expect = 0.005
Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 41/235 (17%)
Query: 989 YISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAG-- 1046
YI + ++ + ++ +DV +S +RY+ L + + D P V + + + G
Sbjct: 1211 YIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFL 1270
Query: 1047 -ADKFGNICVVRLPPNTNDEVDEDPTGNKA----------LWD---RGLLNGASQKAEVI 1092
+D+ N+ V P + +A W RG G S+K+ V
Sbjct: 1271 VSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGATEGLSKKSVVW 1330
Query: 1093 MNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFT--SHEDHDFFQHVEMHLRS 1150
N H+ + TL GGIG+L+P ++ Q+ +
Sbjct: 1331 ENKHI-------------------TWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLP 1371
Query: 1151 EHPPLCGRD----HLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTP 1201
H L R H+ R+ V+NV+DG+L ++ + ++ +++++ TP
Sbjct: 1372 HHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTP 1426
>gi|100815815 tumor necrosis factor, alpha-induced protein 9 [Homo
sapiens]
Length = 459
Score = 32.3 bits (72), Expect = 2.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 1105 QKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF 1140
QKTTL+P G+E L Y+ + GI++ E +DF
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSGIIIIAIHREHYDF 88
>gi|14195607 protocadherin beta 1 precursor [Homo sapiens]
Length = 818
Score = 32.3 bits (72), Expect = 2.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 162 KANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVV 221
K+ T HVV +DV P F+ L + ++N P G A T+T +LD G N +
Sbjct: 222 KSGTAHIHVVVLDVNDHVPQFSRLVYRAQVSENSPNGSLVA----TVTAVDLDEGTNKAI 277
>gi|153945852 G7c protein [Homo sapiens]
Length = 891
Score = 32.0 bits (71), Expect = 3.7
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 358 LYQIAHLGDDDEEPEFSSAMPLEE------GDTFFFQPRPLKNLVLVDELDSLSPILFCQ 411
L +I LG DE SA+ L D F F K+ L ++++SL+ C+
Sbjct: 380 LNEIHALGGGDEPEMCLSALQLALLHTPPLSDIFVFTDASPKDAFLTNQVESLTQERRCR 439
Query: 412 IADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIED 468
+ L EDT ++ GR R L LR L ++T +HI D
Sbjct: 440 VTFLVTEDTSRVQ---GRARREILSPLR----FEPYKAVALASGGEVIFTKDQHIRD 489
>gi|4557461 nicotinic acetylcholine receptor delta polypeptide
precursor [Homo sapiens]
Length = 517
Score = 30.8 bits (68), Expect = 8.2
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 25/92 (27%)
Query: 973 GKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESF---IWVRYKRNENQLIIFADDTY 1029
G K LR +K + ++ T+ + + + +V+E+ +W+ + +N+L
Sbjct: 37 GYNKELRPVAHKEESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRL-------- 88
Query: 1030 PRWVTTASLLDYDTVAGADKFGNICVVRLPPN 1061
+W A++FGNI V+RLPP+
Sbjct: 89 -KW-------------NAEEFGNISVLRLPPD 106
>gi|117168279 ovary-specific acidic protein [Homo sapiens]
Length = 240
Score = 30.8 bits (68), Expect = 8.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 903 WYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPV-EEVPAAIAPFQG 957
+Y++VGV +V+ G Y YK V + + HKT + E+ A I PFQG
Sbjct: 48 YYLVVGV---------TVSAGGYYAYKTVTSDQAKHTEHKTNLKEKTKAEIHPFQG 94
>gi|154124881 kinesin family member 25 isoform 2 [Homo sapiens]
Length = 332
Score = 30.8 bits (68), Expect = 8.2
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 48 GKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVG--SDSGRIVILEYQPSKNMFEKIHQE 105
G V LLT + G +MA+ TG K Y ++G SD G ++ L+ Q + ++ +E
Sbjct: 44 GDVCPLLTSLLDGYNVCVMAYGQTGSGKSYTMLGRHSDDGPVLPLDPQSDLGIIPRVAEE 103
Query: 106 TF 107
F
Sbjct: 104 LF 105
>gi|154124879 kinesin family member 25 isoform 1 [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 8.2
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 48 GKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVG--SDSGRIVILEYQPSKNMFEKIHQE 105
G V LLT + G +MA+ TG K Y ++G SD G ++ L+ Q + ++ +E
Sbjct: 44 GDVCPLLTSLLDGYNVCVMAYGQTGSGKSYTMLGRHSDDGPVLPLDPQSDLGIIPRVAEE 103
Query: 106 TF 107
F
Sbjct: 104 LF 105
>gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens]
Length = 785
Score = 30.8 bits (68), Expect = 8.2
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 27/193 (13%)
Query: 787 KFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGED-------ERELAAEMA 839
K+++ E + I I ++ ATK +++ A + A D E E +
Sbjct: 83 KYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIK 142
Query: 840 AAFLNENLPESIFGAPKAGNGQWA----SVIRVM-----NPIQGNTLDLV-QLEQNEAAF 889
+N+N P+ + G AG + + SV++V +P GN+ +V + Q + F
Sbjct: 143 IQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYF 202
Query: 890 SV---------AVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVN-NGEKLEF 939
SV A+ +D Y+LV AKD++ ++G T L + N F
Sbjct: 203 SVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRF 262
Query: 940 LHKTPVEEVPAAI 952
++ VP ++
Sbjct: 263 PRRSYQYNVPESL 275
>gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens]
Length = 785
Score = 30.8 bits (68), Expect = 8.2
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 27/193 (13%)
Query: 787 KFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGED-------ERELAAEMA 839
K+++ E + I I ++ ATK +++ A + A D E E +
Sbjct: 83 KYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIK 142
Query: 840 AAFLNENLPESIFGAPKAGNGQWA----SVIRVM-----NPIQGNTLDLV-QLEQNEAAF 889
+N+N P+ + G AG + + SV++V +P GN+ +V + Q + F
Sbjct: 143 IQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYF 202
Query: 890 SV---------AVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVN-NGEKLEF 939
SV A+ +D Y+LV AKD++ ++G T L + N F
Sbjct: 203 SVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRF 262
Query: 940 LHKTPVEEVPAAI 952
++ VP ++
Sbjct: 263 PRRSYQYNVPESL 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,345,796
Number of Sequences: 37866
Number of extensions: 2167445
Number of successful extensions: 4538
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4504
Number of HSP's gapped (non-prelim): 23
length of query: 1217
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1103
effective length of database: 13,930,794
effective search space: 15365665782
effective search space used: 15365665782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.