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Search of human proteins with 13376768
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376768 elongation factor RNA polymerase II-like 3 [Homo
sapiens]
(397 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376768 elongation factor RNA polymerase II-like 3 [Homo sap... 804 0.0
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens] 131 1e-30
gi|5729812 elongation factor RNA polymerase II [Homo sapiens] 126 3e-29
gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 74 2e-13
gi|4505487 occludin [Homo sapiens] 57 4e-08
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 55 8e-08
gi|31543559 radial spoke 3 homolog [Homo sapiens] 38 0.014
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 37 0.031
gi|20070376 solute carrier family 38, member 10 isoform b [Homo ... 37 0.031
gi|147905592 coiled-coil domain containing 102B [Homo sapiens] 37 0.041
gi|148233522 coiled-coil domain containing 102B [Homo sapiens] 37 0.041
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 36 0.053
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 36 0.070
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 36 0.070
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 36 0.070
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 35 0.091
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 35 0.091
gi|71725360 zinc finger protein 609 [Homo sapiens] 34 0.20
gi|169208042 PREDICTED: similar to Golgin subfamily A member 8-l... 34 0.26
gi|113425145 PREDICTED: similar to Golgin subfamily A member 8-l... 34 0.26
gi|169208038 PREDICTED: similar to Golgin subfamily A member 8-l... 34 0.26
gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-l... 34 0.26
gi|109659847 filamin A interacting protein 1-like isoform 3 [Hom... 34 0.26
gi|109659849 filamin A interacting protein 1-like isoform 2 [Hom... 34 0.26
gi|109659845 filamin A interacting protein 1-like isoform 1 [Hom... 34 0.26
gi|221139761 zinc finger protein 853 [Homo sapiens] 33 0.35
gi|169208018 PREDICTED: similar to Golgin subfamily A member 8-l... 33 0.35
gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-l... 33 0.35
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 33 0.35
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 33 0.35
>gi|13376768 elongation factor RNA polymerase II-like 3 [Homo
sapiens]
Length = 397
Score = 804 bits (2076), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL 60
MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL
Sbjct: 1 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL 60
Query: 61 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP 120
PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP
Sbjct: 61 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP 120
Query: 121 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS 180
APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS
Sbjct: 121 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS 180
Query: 181 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP 240
REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP
Sbjct: 181 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP 240
Query: 241 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ 300
LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ
Sbjct: 241 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ 300
Query: 301 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR 360
HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR
Sbjct: 301 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR 360
Query: 361 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS 397
KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
Sbjct: 361 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS 397
>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
Length = 640
Score = 131 bits (329), Expect = 1e-30
Identities = 70/156 (44%), Positives = 106/156 (67%), Gaps = 10/156 (6%)
Query: 250 QEGEDWEQEDEDMDPRLEHSS-----SVQED---SESPSPEDIPDYLLQYRAIHSAEQQH 301
++ ED ++E+E +L +SS V+ED S PS ++PDYL++Y AI S EQ+
Sbjct: 485 EKEEDLKREEEIA--KLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIKYIAIVSYEQRQ 542
Query: 302 AYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRK 361
Y+ DF +Y EYR LHAR+ T ++RFI+L A+ KR+ G+ EY+ + ++++QEY+K ++
Sbjct: 543 NYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQ 602
Query: 362 QYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS 397
P+Y EEK RCEYLH KL+HIK LI EF+++ S
Sbjct: 603 SSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAES 638
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 23 SLLLLRLNDAALRALQECQRQQ----VRPVIAFQGHRGYLRLPGP---GWSCLFSFIVSQ 75
++L ++L + A+RAL+ Q + RP I FQG G +++P F+F +S
Sbjct: 28 TVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHGLVKIPKNDPLNEVHNFNFYLSN 87
Query: 76 CCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDS 118
++ GS D + Q F SG + L+CLG +++++ + A DS
Sbjct: 88 VGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNDS 130
>gi|5729812 elongation factor RNA polymerase II [Homo sapiens]
Length = 621
Score = 126 bits (317), Expect = 3e-29
Identities = 71/203 (34%), Positives = 111/203 (54%), Gaps = 21/203 (10%)
Query: 191 SQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQ 250
+Q P+ P ++ P S+K DK+R+ E+K LP
Sbjct: 434 AQPSRPHGSPSRSKPKKKSKKHKDKERAA-------EDKPRAQLPDCAPATHATPGAPAD 486
Query: 251 EGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETD 310
P L + SV S S + PDYLL+Y AI S+EQ+ +Y+ DF +
Sbjct: 487 T------------PGLNGTCSVS--SVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAE 532
Query: 311 YAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
Y+EYR LHAR+ ++RF +L A+++++ +G+ EY+ +I+QEY+K +K +Y +EK
Sbjct: 533 YSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEK 592
Query: 371 RRCEYLHQKLSHIKGLILEFEEK 393
RCEYLH KL+HIK LI E++++
Sbjct: 593 HRCEYLHSKLAHIKRLIAEYDQR 615
Score = 58.2 bits (139), Expect = 1e-08
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 17 TQAARTSLLLLRLNDAALRALQECQRQQ----VRPVIAFQGHRGYLRLPGPGWSC---LF 69
+ ++ S+ ++L D+ALRA + + +Q +RP I FQG +G++ +P P F
Sbjct: 18 SDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQGHISIPQPDCPAEARTF 77
Query: 70 SFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDS 118
SF +S ++ GS D + Q G L CLGS+++++ + A DS
Sbjct: 78 SFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITVCATDDS 126
>gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens]
Length = 558
Score = 73.9 bits (180), Expect = 2e-13
Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 279 PSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRV 338
P P +PDY+ +Y I + +++ Y+ F+ ++EY+ L A V ++F EL A + R+
Sbjct: 434 PKPIVMPDYVAKYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRL 493
Query: 339 RRGTPEYKVLE--DKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392
+ + E +I +E+KK +K P++ E+K RC+YL KLSHIK I E+++
Sbjct: 494 PHHSESRQEHERISRIHEEFKK-KKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDK 548
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 56.6 bits (135), Expect = 4e-08
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 286 DYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEY 345
D++ +Y I S +Q+ Y+++F+T EY+ L + + ++ L E+ R + EY
Sbjct: 415 DWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEY 474
Query: 346 KVLEDKIIQEYKKFR--KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEK 393
D EY + + K Y+ +K C+ L KLSHIK ++ +++ +
Sbjct: 475 MAAAD----EYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQ 520
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 55.5 bits (132), Expect = 8e-08
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 279 PSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRV 338
P P +PDY L+Y + S ++ Y F+ Y E+ L VG A + +L A + +
Sbjct: 141 PRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSL 200
Query: 339 RRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEK 393
+ + + + ++ P + +++ RC YL KL H+K I +F+++
Sbjct: 201 PPPQSQKEAQVAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFDDQ 255
>gi|31543559 radial spoke 3 homolog [Homo sapiens]
Length = 560
Score = 38.1 bits (87), Expect = 0.014
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 17/200 (8%)
Query: 189 VRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQD 248
+R T+ P+ P S +R + R +A + +E+ P P P++G + D
Sbjct: 198 IRGNTYALQTGPLLGRPDSLELQRQREARKRALARKQAQEQ---LRPQTPEPVEGRKHVD 254
Query: 249 LQEGEDWEQEDEDMDPRLEHSSSVQEDS---ESPSPEDIPDYLLQYRAIHSAEQQHAYEQ 305
+Q E E D +E Q D+ P+P IP + A E +
Sbjct: 255 VQTELYLE---EIADRIIEVDMECQTDAFLDRPPTPLFIPAKTGKDVATQILEGEL---- 307
Query: 306 DFETDYAEYRILHARVG-TASQRFIEL--GAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQ 362
F+ D +L VG T Q +E+ E+ +R EY+ L + E ++ +Q
Sbjct: 308 -FDFDLEVKPVLEVLVGKTIEQSLLEVMEEEELANLRASQREYEELRNSERAEVQRLEEQ 366
Query: 363 YPSYREEKRRCEYLHQKLSH 382
+REEK R + ++ H
Sbjct: 367 ERRHREEKERRKKQQWEIMH 386
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 37.0 bits (84), Expect = 0.031
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Query: 105 SLRERLIIWAAMDSIPAPSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSV 164
+L ++++W + + S+V +++E+ + + GG G+A ++ +S
Sbjct: 373 ALSSQVVLWVGL-GVLVVSTVTTLSVSEEVPEDLAEEAPGGRL-GEAEGLMKVEAARLSA 430
Query: 165 SDPLAS--NQGQSLPG--SSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP 220
DP+ + G+ P RE + Q +++ VP RE + P A R + +VP
Sbjct: 431 QDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVP 490
Query: 221 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS 280
V E P VP + EG+D E +E+ P H+ +
Sbjct: 491 VGEAHRHE------PPVPH-----DKVVVDEGQDREVPEENKPPS-RHAGGKAPGVQGQM 538
Query: 281 PEDIPD 286
+PD
Sbjct: 539 APPLPD 544
>gi|20070376 solute carrier family 38, member 10 isoform b [Homo
sapiens]
Length = 780
Score = 37.0 bits (84), Expect = 0.031
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Query: 105 SLRERLIIWAAMDSIPAPSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSV 164
+L ++++W + + S+V +++E+ + + GG G+A ++ +S
Sbjct: 373 ALSSQVVLWVGL-GVLVVSTVTTLSVSEEVPEDLAEEAPGGRL-GEAEGLMKVEAARLSA 430
Query: 165 SDPLAS--NQGQSLPG--SSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP 220
DP+ + G+ P RE + Q +++ VP RE + P A R + +VP
Sbjct: 431 QDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVP 490
Query: 221 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS 280
V E P VP + EG+D E +E+ P H+ +
Sbjct: 491 VGEAHRHE------PPVPH-----DKVVVDEGQDREVPEENKPPS-RHAGGKAPGVQGQM 538
Query: 281 PEDIPD 286
+PD
Sbjct: 539 APPLPD 544
>gi|147905592 coiled-coil domain containing 102B [Homo sapiens]
Length = 513
Score = 36.6 bits (83), Expect = 0.041
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 19/221 (8%)
Query: 174 QSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRT 233
+ L S +++ ++++ H + + S+ + K R + ELE +
Sbjct: 300 EELKESKPKNVKEFDILLGQHNDEMQELSGNIKEESKSQNSKDRVICELRAELERLQAEN 359
Query: 234 LP------LVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDY 287
++ QGL +E + + ++M+ L+ + + +S+SP + +
Sbjct: 360 TSEWDKREILEREKQGLE----RENRRLKIQVKEMEELLDKKNRLSANSQSPDFK-MSQI 414
Query: 288 LLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKV 347
LQ + QHAY + +Y+ A + A+ R + AE+K++R E K
Sbjct: 415 DLQEKNQELLNLQHAYYKLNR----QYQANIAELTHANNRVDQNEAEVKKLRLRVEELKQ 470
Query: 348 ----LEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIK 384
ED++ + RK S EEK R E L +L H++
Sbjct: 471 GLNQKEDELDDSLNQIRKLQRSLDEEKERNENLETELRHLQ 511
>gi|148233522 coiled-coil domain containing 102B [Homo sapiens]
Length = 513
Score = 36.6 bits (83), Expect = 0.041
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 19/221 (8%)
Query: 174 QSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRT 233
+ L S +++ ++++ H + + S+ + K R + ELE +
Sbjct: 300 EELKESKPKNVKEFDILLGQHNDEMQELSGNIKEESKSQNSKDRVICELRAELERLQAEN 359
Query: 234 LP------LVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDY 287
++ QGL +E + + ++M+ L+ + + +S+SP + +
Sbjct: 360 TSEWDKREILEREKQGLE----RENRRLKIQVKEMEELLDKKNRLSANSQSPDFK-MSQI 414
Query: 288 LLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKV 347
LQ + QHAY + +Y+ A + A+ R + AE+K++R E K
Sbjct: 415 DLQEKNQELLNLQHAYYKLNR----QYQANIAELTHANNRVDQNEAEVKKLRLRVEELKQ 470
Query: 348 ----LEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIK 384
ED++ + RK S EEK R E L +L H++
Sbjct: 471 GLNQKEDELDDSLNQIRKLQRSLDEEKERNENLETELRHLQ 511
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 36.2 bits (82), Expect = 0.053
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 260 EDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHA 319
+ MD R + + ++E++E S +L+Q + + + E QH L
Sbjct: 1888 QQMDGRNKPTELLEENTEEKSKS----HLVQPKLLSNMEAQH-------------NDLEF 1930
Query: 320 RVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQK 379
++ A + +LG EI R+++ + ++L + QE + +K+Y REEK + E +
Sbjct: 1931 KLAGAEREKQKLGKEIVRLQK---DLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLE 1987
Query: 380 LSH---IKGLILEF 390
L H +K L+ EF
Sbjct: 1988 LKHNSTLKQLMREF 2001
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 35.8 bits (81), Expect = 0.070
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 134 ARHPESWQNTGGYSEGDAVSQPQMALE-EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQ 192
+R P W+ G G +S+ M + + V +P+ S +P + R+ Q S+
Sbjct: 1157 SRKPIHWKKRPGRKPGFKLSREIMPVSTQACVIEPIVS-----IPKAGRKPKIQ---ESE 1208
Query: 193 THVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQEG 252
V EP + +P RK ++ ++ E EE+ + + + +N E
Sbjct: 1209 ETV---EPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEVPAASPADSSNSPETET 1265
Query: 253 EDWEQEDEDMDPRL----EHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFE 308
++ E E+E+ PR+ S Q++ E P PE+ D A Q ++ D E
Sbjct: 1266 KEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEED------AAAETAQNDDHDADDE 1319
Query: 309 TD 310
D
Sbjct: 1320 DD 1321
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 35.8 bits (81), Expect = 0.070
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 134 ARHPESWQNTGGYSEGDAVSQPQMALE-EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQ 192
+R P W+ G G +S+ M + + V +P+ S +P + R+ Q S+
Sbjct: 1157 SRKPIHWKKRPGRKPGFKLSREIMPVSTQACVIEPIVS-----IPKAGRKPKIQ---ESE 1208
Query: 193 THVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQEG 252
V EP + +P RK ++ ++ E EE+ + + + +N E
Sbjct: 1209 ETV---EPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEVPAASPADSSNSPETET 1265
Query: 253 EDWEQEDEDMDPRL----EHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFE 308
++ E E+E+ PR+ S Q++ E P PE+ D A Q ++ D E
Sbjct: 1266 KEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEED------AAAETAQNDDHDADDE 1319
Query: 309 TD 310
D
Sbjct: 1320 DD 1321
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 35.8 bits (81), Expect = 0.070
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 134 ARHPESWQNTGGYSEGDAVSQPQMALE-EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQ 192
+R P W+ G G +S+ M + + V +P+ S +P + R+ Q S+
Sbjct: 1157 SRKPIHWKKRPGRKPGFKLSREIMPVSTQACVIEPIVS-----IPKAGRKPKIQ---ESE 1208
Query: 193 THVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQEG 252
V EP + +P RK ++ ++ E EE+ + + + +N E
Sbjct: 1209 ETV---EPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEVPAASPADSSNSPETET 1265
Query: 253 EDWEQEDEDMDPRL----EHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFE 308
++ E E+E+ PR+ S Q++ E P PE+ D A Q ++ D E
Sbjct: 1266 KEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEED------AAAETAQNDDHDADDE 1319
Query: 309 TD 310
D
Sbjct: 1320 DD 1321
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 35.4 bits (80), Expect = 0.091
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 143 TGGYSEGDAVSQPQ----MALEEVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNR 198
T +++G A +PQ A + S+ + + +SRE +A+ +P
Sbjct: 184 TSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVAR-------PLPAE 236
Query: 199 EPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQE 258
EP +A S +R +++R E EEKR R+ P+P Q L + +E Q
Sbjct: 237 EPERA--KSGTRTEKEEERD------EKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQA 288
Query: 259 DEDMD----PRLEHSSSVQEDSESPSPED 283
DED D +H S ++ + PE+
Sbjct: 289 DEDEDGDEKDEKKHRSQPKDLAAKRRPEE 317
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 35.4 bits (80), Expect = 0.091
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 143 TGGYSEGDAVSQPQ----MALEEVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNR 198
T +++G A +PQ A + S+ + + +SRE +A+ +P
Sbjct: 168 TSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVAR-------PLPAE 220
Query: 199 EPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQE 258
EP +A S +R +++R E EEKR R+ P+P Q L + +E Q
Sbjct: 221 EPERA--KSGTRTEKEEERD------EKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQA 272
Query: 259 DEDMD----PRLEHSSSVQEDSESPSPED 283
DED D +H S ++ + PE+
Sbjct: 273 DEDEDGDEKDEKKHRSQPKDLAAKRRPEE 301
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 34.3 bits (77), Expect = 0.20
Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 55/227 (24%)
Query: 160 EEVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVP----NREPVQALPSSASRKRLDK 215
E + SD ++ + + S H P E V+A PSSA+ K
Sbjct: 385 ETATASDSKGTSNSSKTRAGANSKGRRGSQNSSEHRPPASSTSEDVKASPSSAN-----K 439
Query: 216 KRSVPVATVELEE--------KRFRTLPL--VPSPLQGLTNQDLQEGEDWEQEDEDMDPR 265
+++ P++ +EL KR RT + PL G ++P
Sbjct: 440 RKNKPLSDMELNSSSEDSKGSKRVRTNSMGSATGPLPGTK----------------VEPT 483
Query: 266 LEHSSSVQEDSESPSPEDI----PDYLLQYRAIHSAE--QQHAY-------EQDFETDYA 312
+ D PSP I P+ +Y+ I+ + Q HA+ E D +++Y
Sbjct: 484 VL-------DRNCPSPVLIDCPHPNCNKKYKHINGLKYHQAHAHTDDDSKPEADGDSEYG 536
Query: 313 EYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKF 359
E ILHA +G+ + + + R TP+ +++E KF
Sbjct: 537 EEPILHADLGSCNGASVSQKGSLSPARSATPKVRLVEPHSPSPSSKF 583
>gi|169208042 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 2 [Homo sapiens]
Length = 595
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 255 WEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEY 314
+E+E +D+ RL+HS + + ES I + + S + H E + E +
Sbjct: 151 FEEESKDLAVRLQHSLQCKGELESALSAVIATEKKKANQLSSCSKAHT-EWELEQSLQDQ 209
Query: 315 RILHARVGTASQRFIELGAE----IKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
+L A++ + F +L E + + + K+ QE +K+ +++
Sbjct: 210 ALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKE---KQQDM 266
Query: 371 RRCEYLHQKLSHIKGLILE 389
RR E L + LS +K + E
Sbjct: 267 RRVEELERSLSKLKNQMAE 285
>gi|113425145 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 255 WEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEY 314
+E+E +D+ RL+HS + + ES I + + S + H E + E +
Sbjct: 159 FEEESKDLAVRLQHSLQCKGELESALSAVIATEKKKANQLSSCSKAHT-EWELEQSLQDQ 217
Query: 315 RILHARVGTASQRFIELGAE----IKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
+L A++ + F +L E + + + K+ QE +K+ +++
Sbjct: 218 ALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKE---KQQDM 274
Query: 371 RRCEYLHQKLSHIKGLILE 389
RR E L + LS +K + E
Sbjct: 275 RRVEELERSLSKLKNQMAE 293
>gi|169208038 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 2 [Homo sapiens]
Length = 595
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 255 WEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEY 314
+E+E +D+ RL+HS + + ES I + + S + H E + E +
Sbjct: 151 FEEESKDLAVRLQHSLQCKGELESALSAVIATEKKKANQLSSCSKAHT-EWELEQSLQDQ 209
Query: 315 RILHARVGTASQRFIELGAE----IKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
+L A++ + F +L E + + + K+ QE +K+ +++
Sbjct: 210 ALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKE---KQQDM 266
Query: 371 RRCEYLHQKLSHIKGLILE 389
RR E L + LS +K + E
Sbjct: 267 RRVEELERSLSKLKNQMAE 285
>gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 255 WEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEY 314
+E+E +D+ RL+HS + + ES I + + S + H E + E +
Sbjct: 159 FEEESKDLAVRLQHSLQCKGELESALSAVIATEKKKANQLSSCSKAHT-EWELEQSLQDQ 217
Query: 315 RILHARVGTASQRFIELGAE----IKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
+L A++ + F +L E + + + K+ QE +K+ +++
Sbjct: 218 ALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKE---KQQDM 274
Query: 371 RRCEYLHQKLSHIKGLILE 389
RR E L + LS +K + E
Sbjct: 275 RRVEELERSLSKLKNQMAE 293
>gi|109659847 filamin A interacting protein 1-like isoform 3 [Homo
sapiens]
Length = 1133
Score = 33.9 bits (76), Expect = 0.26
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 330 ELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIK 384
EL E++R++ + K +ED +++ ++ Y E+ + ++L ++L H+K
Sbjct: 627 ELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVK 681
>gi|109659849 filamin A interacting protein 1-like isoform 2 [Homo
sapiens]
Length = 893
Score = 33.9 bits (76), Expect = 0.26
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 330 ELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIK 384
EL E++R++ + K +ED +++ ++ Y E+ + ++L ++L H+K
Sbjct: 387 ELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVK 441
>gi|109659845 filamin A interacting protein 1-like isoform 1 [Homo
sapiens]
Length = 1135
Score = 33.9 bits (76), Expect = 0.26
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 330 ELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIK 384
EL E++R++ + K +ED +++ ++ Y E+ + ++L ++L H+K
Sbjct: 627 ELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVK 681
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 33.5 bits (75), Expect = 0.35
Identities = 50/278 (17%), Positives = 112/278 (40%), Gaps = 18/278 (6%)
Query: 117 DSIPAPSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDP----LASNQ 172
D P P ++ G + +++ E Q + AVS P A E + P L Q
Sbjct: 34 DGGPGPDTLSGGSGGSESQEEEEPQERNSSPQRPAVSAPVGASEIAEETRPGQRELQLQQ 93
Query: 173 GQSLPGSSREHMAQWEVRSQTHVP-NREPVQALPSSASRKRLDKKRSVPVATVELEEKRF 231
+ P ++ + + Q H+ ++P Q S+ + +K +SV ++ E
Sbjct: 94 LEQQPEPQQQPQHEQLQQPQPHLELQQQPQQDGQQQLSQLQQEKHQSVHHQELKPE---- 149
Query: 232 RTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQY 291
L L+ Q L Q +QE + +Q+ E + + V + E + LLQ
Sbjct: 150 --LQLMHQQQQ-LQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQ 206
Query: 292 RAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFI-----ELGAEIKRVRRGTPEYK 346
+ +QQ +Q + +++ ++ Q + +L ++ + ++ + +
Sbjct: 207 QQ-EQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQ 265
Query: 347 VLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIK 384
+LE + Q ++ Q +++++ + L Q+ ++
Sbjct: 266 LLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQ 303
>gi|169208018 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 595
Score = 33.5 bits (75), Expect = 0.35
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 255 WEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEY 314
+E+E +D+ RL+HS + + E I + + S + H E + E +
Sbjct: 151 FEEESKDLAVRLQHSLQCKGELERALSAVIATEKKKANQLSSCSKAHT-EWELEQSLQDQ 209
Query: 315 RILHARVGTASQRFIELGAE----IKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
+L A++ + F +L E + + + K++QE +K+ +++
Sbjct: 210 ALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMLQEICTLKKE---KQQDM 266
Query: 371 RRCEYLHQKLSHIKGLILE 389
RR E L + LS +K + E
Sbjct: 267 RRVEELERSLSKLKNQMAE 285
>gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 4 [Homo sapiens]
Length = 632
Score = 33.5 bits (75), Expect = 0.35
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 255 WEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEY 314
+E+E +D+ RL+HS + + E I + + S + H E + E +
Sbjct: 159 FEEESKDLAVRLQHSLQCKGELERALSAVIATEKKKANQLSSCSKAHT-EWELEQSLQDQ 217
Query: 315 RILHARVGTASQRFIELGAE----IKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
+L A++ + F +L E + + + K++QE +K+ +++
Sbjct: 218 ALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMLQEICTLKKE---KQQDM 274
Query: 371 RRCEYLHQKLSHIKGLILE 389
RR E L + LS +K + E
Sbjct: 275 RRVEELERSLSKLKNQMAE 293
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 33.5 bits (75), Expect = 0.35
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 250 QEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFET 309
QE + WEQE+E + QE+ E I + + R EQ+ + E
Sbjct: 416 QEEKMWEQEEEMQE---------QEEKMRRQEEKIREQEKKIR-----EQEEKIREQEEM 461
Query: 310 DYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREE 369
+ + + G ++ ++ + +++RR + + E KI ++ +K R+Q +E+
Sbjct: 462 MQEQEEKMGEQEGKMCEQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQ 521
Query: 370 KRRCEYLHQKLSHIKGLILEFEEKNR 395
+ + +K+ + + E EEK R
Sbjct: 522 EEKMWEQEEKMCEQEEKMQEQEEKMR 547
Score = 32.0 bits (71), Expect = 1.0
Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 22/157 (14%)
Query: 250 QEGEDWEQEDE--DMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHA--YEQ 305
QE WE+E++ +++ ++ ++E E E+ + R ++Q A + Q
Sbjct: 335 QEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEE------KIREQEKRQEQEAKMWRQ 388
Query: 306 DFETDYAEYRILHA---------RVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEY 356
+ + E +I ++G ++ E E++ + + E+KI ++
Sbjct: 389 EEKIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQEEEMQEQEE---KMRRQEEKIREQE 445
Query: 357 KKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEK 393
KK R+Q RE++ + +K+ +G + E E K
Sbjct: 446 KKIREQEEKIREQEEMMQEQEEKMGEQEGKMCEQEAK 482
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 33.5 bits (75), Expect = 0.35
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 29/263 (11%)
Query: 144 GGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSSREHMA-QWE-----VRSQTHVPN 197
G Y G A++ P E + D S +SLPG + E +A +WE ++ +T
Sbjct: 1302 GKYLPG-AITSPD---EHILTPDSSFSKSPESLPGPALEDIAIKWEDKVPGLKDRTSEQK 1357
Query: 198 REPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDL---QEGED 254
+EP P ++ DK + ++ + + + QD Q+G D
Sbjct: 1358 KEPE---PKDEVLQQKDKTLEHKEVVEPKDTAIYQKDEALHVKNEAVKQQDKALEQKGRD 1414
Query: 255 WEQED---EDMDPRLEHSSSVQEDSESP--SPEDIP---DYLLQYRAIHSAEQQHAYEQD 306
EQ+D E D LE E+ + + IP D L+ + ++ A E
Sbjct: 1415 LEQKDTALEQKDKALEPKDKDLEEKDKALEQKDKIPEEKDKALEQKDTALEQKDKALEPK 1474
Query: 307 FETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSY 366
+ + R+L + ++ L +++ V E+K ED + + + +Q
Sbjct: 1475 DKDLEQKDRVLEQKEKIPEEKDKALDQKVRSV-----EHKAPEDTVAEMKDRDLEQTDKA 1529
Query: 367 REEKRRCEYLHQKLSHIKGLILE 389
E+K + + K+S K LE
Sbjct: 1530 PEQKHQAQEQKDKVSEKKDQALE 1552
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,369,888
Number of Sequences: 37866
Number of extensions: 880609
Number of successful extensions: 4200
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 3959
Number of HSP's gapped (non-prelim): 325
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.