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Search of human proteins with 5174543
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
(365 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 764 0.0
gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens] 540 e-154
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 186 4e-47
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 182 3e-46
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 181 9e-46
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 180 2e-45
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 178 6e-45
gi|163965366 nascent polypeptide-associated complex alpha subuni... 81 2e-15
gi|110832843 TBP-associated factor 4 [Homo sapiens] 71 1e-12
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 69 5e-12
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 67 3e-11
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 66 4e-11
gi|146134388 YLP motif containing 1 [Homo sapiens] 65 7e-11
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 64 2e-10
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 64 3e-10
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 62 8e-10
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 61 2e-09
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 61 2e-09
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 61 2e-09
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 60 2e-09
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 60 4e-09
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 59 5e-09
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 59 7e-09
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 59 7e-09
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 59 7e-09
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 59 9e-09
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 59 9e-09
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 58 1e-08
gi|19924097 synapsin I isoform Ib [Homo sapiens] 58 2e-08
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 58 2e-08
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 764 bits (1973), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG
Sbjct: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP
Sbjct: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT
Sbjct: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
Query: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS
Sbjct: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
Query: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASS 360
PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASS
Sbjct: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASS 360
Query: 361 EKTQQ 365
EKTQQ
Sbjct: 361 EKTQQ 365
>gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]
Length = 368
Score = 540 bits (1392), Expect = e-154
Identities = 281/350 (80%), Positives = 282/350 (80%), Gaps = 18/350 (5%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG
Sbjct: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP
Sbjct: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT
Sbjct: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
Query: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
PGPPLGSFPFLPGGPP P PP P S R G PA
Sbjct: 241 PGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPS------RGDGPPAV----- 289
Query: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPG----RRSPGGTSPERSPGT 346
S P +SL GPP G PT R SP P P T
Sbjct: 290 ---SSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKT 336
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 186 bits (471), Expect = 4e-47
Identities = 116/249 (46%), Positives = 150/249 (60%), Gaps = 26/249 (10%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGI-GLDGPELEPDEG---PEEPGEKFRRL 116
DMD+VLLKYTEY+EPHESRTN+DI+ETL+++G+ G D P+ + D+ E +K+R++
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKI 120
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPS-PFRPAAP 175
E D + R RL A+PPP + + ++P S S +
Sbjct: 121 -NEDIDLMISRQRLC--------------AVPPPNFE---MPVSIPVSSHNSLVYSNPVS 162
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPL--YLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQ 233
G P L+ PL PS + P + P+ G L GG G + +
Sbjct: 163 SLGNPNLL-PLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSAGNGYGNPRN 221
Query: 234 NPCSTATPG 242
+P +PG
Sbjct: 222 SPGLLVSPG 230
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 182 bits (463), Expect = 3e-46
Identities = 128/299 (42%), Positives = 163/299 (54%), Gaps = 50/299 (16%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETL-KRRGIGLDGPE------LEP--DEGPEEPGE 111
DMD+VLLKYTEY+EPHESRTN+DI+E L K+ G + P+ L P +E ++ E
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINE 120
Query: 112 KFRRLAGEGGDPALP----------------------------RPRLYPAA-PAMP---- 138
+F + PA+P P L P A P++
Sbjct: 121 EFDNMIKSHKIPAVPPPNFEMPVSIPVSSHNSLVYSNPVSSLGNPNLLPLAHPSLQRNSM 180
Query: 139 SPDVVYGALPPPGCDPSGL--GEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKT 196
SP V + PP + GL G+ + P+ P LV P ++ +K+
Sbjct: 181 SPGVTH--RPPSAGNTGGLMGGDLTSGAGTSAGNGYGNPRNSPGLLVSPGNLNKNMQAKS 238
Query: 197 PPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSF--PFLPG 253
PPP+ L R+ DL + P G NT S+ + N S + P+ S P LPG
Sbjct: 239 PPPMNLGMNNRKPDL--RVLIPPGSKNTMPSVNQRINNSQSAQSLATPVVSVATPTLPG 295
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 181 bits (459), Expect = 9e-46
Identities = 131/301 (43%), Positives = 161/301 (53%), Gaps = 44/301 (14%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI RI D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN +N+LFQYAST
Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGI-GLDGPELEPDEGPEEP---GEKFRRL 116
DMD+VLLKYTEY+EPHESRTN DI+ETL+++G G D PE + ++ E+ +K+RR
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRR- 119
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPK 176
A E D R AP P V P + S L + P+ S
Sbjct: 120 ASEELDGLFRRYGSTVPAPNFAMPVTV------PVSNQSSLQFSNPSGS----------- 162
Query: 177 AGPPGLVHPLFSPSHLTSKTPPPLYL----PTEGRRSDLPGGLAGPRGGLNTSRSLYSGL 232
L +PS +TS P L P R S PG P ++ ++ G
Sbjct: 163 ---------LVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPA----SAGAMLGGD 209
Query: 233 QNPCSTATPGPPLGSFPFL---PGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRP 289
N + A P P + PG PV +V +PP PP ++ L A R
Sbjct: 210 LNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPP--PPTHSTQLGAPSRK 267
Query: 290 P 290
P
Sbjct: 268 P 268
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 180 bits (456), Expect = 2e-45
Identities = 130/323 (40%), Positives = 173/323 (53%), Gaps = 30/323 (9%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS+N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGI-GLDGPELEPDEGPEEP--GEKFRRLA 117
DMD+VLLKYTEY+EPHESRTN+DI+ETL+++G+ G + P+ + D P ++F +L
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDAD-DYFEHSPLSEDRFSKL- 118
Query: 118 GEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKA 177
E D R P +P P ++ P P+ L P S SP A+
Sbjct: 119 NEDSDFIFKR-----GPPGLP-PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTL 172
Query: 178 GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL--PGGLAGPRGGLNTSRSLYSGLQNP 235
++ P + H P P+ G + L P G S + +G N
Sbjct: 173 TDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGA--GSSPVGNGFVNS 230
Query: 236 CST-----ATPGPPLGSF-----PFLPGGPPVGAEAW---ARRVPQPAAPPRRPPQSASS 282
++ AT LG P PGG +G + R V P++ PP +
Sbjct: 231 RASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQR 290
Query: 283 LSAS--LRPPGAPATFLRPSPIP 303
+S+S +P P + +P
Sbjct: 291 ISSSQATQPLATPVVSVTTPSLP 313
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 178 bits (452), Expect = 6e-45
Identities = 130/324 (40%), Positives = 171/324 (52%), Gaps = 30/324 (9%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS+N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETL-KRRGIGLDGPELEPDEG---PEEPGEKFRRL 116
DMD+VLLKYTEY+EPHESRTN+DI+E L K+ G D P +PD EK++++
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSP--DPDTSYVLTPHTEEKYKKI 118
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPK 176
E + R + AP +P P ++ P P+ L P S SP A+
Sbjct: 119 NEEFDN----MMRNHKIAPGLP-PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASST 173
Query: 177 AGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL--PGGLAGPRGGLNTSRSLYSGLQN 234
++ P + H P P+ G + L P G S + +G N
Sbjct: 174 LTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGA--GSSPVGNGFVN 231
Query: 235 PCST-----ATPGPPLGSF-----PFLPGGPPVGAEAW---ARRVPQPAAPPRRPPQSAS 281
++ AT LG P PGG +G + R V P++ PP +
Sbjct: 232 SRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQ 291
Query: 282 SLSAS--LRPPGAPATFLRPSPIP 303
+S+S +P P + +P
Sbjct: 292 RISSSQATQPLATPVVSVTTPSLP 315
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 80.9 bits (198), Expect = 2e-15
Identities = 76/251 (30%), Positives = 89/251 (35%), Gaps = 23/251 (9%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPF---------- 170
G A P P+ P PA P G P P G PA + PSP
Sbjct: 1161 GGLATPPPKGAPTTPAATPPSPKGGLATP---SPKG-APTTPAATPPSPKGGLATPSPKG 1216
Query: 171 RPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYS 230
P P A PP L +PS + T P P+ P P T SL
Sbjct: 1217 APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKG 1276
Query: 231 GLQNPCSTATPGPPLGSFPFLPGG----PPVGAEA-WARRVPQPAAPPRRPPQSASSLSA 285
GL P P P + + P GG PP GA A P P P PP +
Sbjct: 1277 GLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPP 1336
Query: 286 SLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGP-PCAGCPWPTAGPGRRSPGGTSPERSP 344
++ PP T P+ P S GP GP P A P GP P SP+R P
Sbjct: 1337 AVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPP---SPKRGP 1393
Query: 345 GTARARGDPTS 355
+GDPTS
Sbjct: 1394 AIPSPKGDPTS 1404
Score = 65.5 bits (158), Expect = 7e-11
Identities = 68/246 (27%), Positives = 83/246 (33%), Gaps = 22/246 (8%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL 182
PA P P+ PA S A P P + +PA P P P A PP
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAP--------KGIPASPSPKG-APTPPAATPPSP 950
Query: 183 VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
+PS + TPP P+ P P T S G P P
Sbjct: 951 KGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPT 1010
Query: 243 PPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPI 302
PP + P G P A + + P P PP S +A+ P GAP T P
Sbjct: 1011 PPAVTPPSPKGSP--AATPFPKGASTP--PAATPPSPKGSPAATPLPKGAPTTPAATLPS 1066
Query: 303 PCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGT---------SPERSPGTARARGDP 353
P P PP A P P GP SP G SP+ T +G P
Sbjct: 1067 PKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAP 1126
Query: 354 TSLQAS 359
T+ A+
Sbjct: 1127 TTPAAT 1132
Score = 59.7 bits (143), Expect = 4e-09
Identities = 72/276 (26%), Positives = 93/276 (33%), Gaps = 40/276 (14%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYG---------ALPPPGCDPSGLGEALPAQSRPSPFR 171
G PA P P+ P PA P G PP PS G + +P
Sbjct: 952 GGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTP 1011
Query: 172 PAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPT-EGRRSDLPGGLAGPRGGLNTSRSLYS 230
PA P G P +P + TPP P+ +G + P P T S
Sbjct: 1012 PAVTPPSPKG--SPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKG 1069
Query: 231 GLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPP------RRPPQSASSLS 284
G P P PP + P GGP + A +P A PP PP + +
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPATPSPKGA-PMPPAATPPSPKGGLATPPHKGAPTT 1128
Query: 285 ASLRPPGAPATFLRPSP-----IPCSS-PGPWQSLCGLGP------PCAGCPWPTAGPGR 332
+ PP P P P ++ P P L P P A P P G
Sbjct: 1129 PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1188
Query: 333 RSPGG--TSPERSP-------GTARARGDPTSLQAS 359
SP G T+P +P T +G PT+ A+
Sbjct: 1189 PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT 1224
Score = 59.3 bits (142), Expect = 5e-09
Identities = 74/280 (26%), Positives = 88/280 (31%), Gaps = 56/280 (20%)
Query: 119 EGGDPALPRPRLYPAAPA--MPSPD------VVYGA-LPPPGCDPSGLGEALPAQSRPSP 169
+G A P P+ P PA +PSP + GA PP PS G + +P
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAP 1103
Query: 170 FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLY 229
PAA P G L +P H + T P P+ P P T S
Sbjct: 1104 MPPAATPPSPKG---GLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPK 1160
Query: 230 SGLQNPCSTATPGPPLGSFPFLPGG----PPVGAEAWARRVP--------------QPAA 271
GL P P P + P GG P GA P P
Sbjct: 1161 GGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTT 1220
Query: 272 PPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPG 331
P PP L A+ P GAP T P P P PP G P P A
Sbjct: 1221 PAATPPSPKGGL-ATPSPKGAPTTPAATPPSPKGGPAT--------PPPKGAPTPPAATP 1271
Query: 332 RRSPGG-----------------TSPERSPGTARARGDPT 354
GG SP+ P T+ +G PT
Sbjct: 1272 PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPT 1311
Score = 58.9 bits (141), Expect = 7e-09
Identities = 81/297 (27%), Positives = 101/297 (34%), Gaps = 65/297 (21%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGC-----------DPSGLGEALPAQSRPSP 169
G PA P P+ P PA P + G PP P G P + P+P
Sbjct: 1253 GGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTP 1312
Query: 170 --FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRS 227
P +PK G PG P +P TPP + P+ LP +GG T S
Sbjct: 1313 PAATPPSPK-GSPGTPPPKGAP------TPPAVTPPSPKGTPTLPATTPSSKGGPTTPSS 1365
Query: 228 LYSGLQNPCSTAT---------PGPPLG-SFPFLPGGP----------------PVGAEA 261
G P +T + P P G + P G P PV E
Sbjct: 1366 K-EGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREG 1424
Query: 262 WARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS------------PIPCSSPGP 309
A PP P S A+ P G PAT PS P P P P
Sbjct: 1425 AATPSKGDLTPPAVTPVSLKKAPATSAPKGGPAT---PSSKGDPTLPAVTPPSPKEPPAP 1481
Query: 310 WQSLCGLGPPCA-GCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQAS--SEKT 363
Q P A P P P + +SP+ P T +R DP + A+ S+KT
Sbjct: 1482 KQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKT 1538
Score = 56.6 bits (135), Expect = 3e-08
Identities = 70/257 (27%), Positives = 92/257 (35%), Gaps = 45/257 (17%)
Query: 102 PDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEAL 161
P GP P K P+L P P+P VV PP P G
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVV---TPP---SPKGGPATS 1304
Query: 162 PAQSRPSP--FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPR 219
P + P+P P +PK G PG P +P TPP + P+ LP +
Sbjct: 1305 PPKGAPTPPAATPPSPK-GSPGTPPPKGAP------TPPAVTPPSPKGTPTLPATTPSSK 1357
Query: 220 GGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWAR--RVPQPAAPPRRPP 277
GG T P S P PP + P GGP + + R +P P P P
Sbjct: 1358 GGPTT----------PSSKEGPTPPAAT-PSHKGGPAMTPPSPKRGPAIPSPKGDPTSP- 1405
Query: 278 QSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGG 337
L P APAT + S G L PP T +++P
Sbjct: 1406 -----AVIPLSPKKAPATPVTREGAATPSKG------DLTPPAV-----TPVSLKKAPAT 1449
Query: 338 TSPERSPGTARARGDPT 354
++P+ P T ++GDPT
Sbjct: 1450 SAPKGGPATPSSKGDPT 1466
Score = 54.7 bits (130), Expect = 1e-07
Identities = 77/290 (26%), Positives = 98/290 (33%), Gaps = 75/290 (25%)
Query: 102 PDEGPEEPGEKFRRLAGEGGDPALPR-----PRLYPAAP------AMPSPDVVYGALPPP 150
P GP P K GDP P P+ PA P A PS G L PP
Sbjct: 1389 PKRGPAIPSPK--------GDPTSPAVIPLSPKKAPATPVTREGAATPSK----GDLTPP 1436
Query: 151 GCDPSGLGEA--------------------LPAQSRPSPFRPAAPKAGPPGLVHPLFSPS 190
P L +A LPA + PSP P APK V SP
Sbjct: 1437 AVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQ-----VATSSSPK 1491
Query: 191 HLTSKTPPPLYLPT-----EGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPL 245
+ TP P+ PT ++P + R + + +L S TP
Sbjct: 1492 KAPA-TPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLS-------KKTPATLA 1543
Query: 246 GSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCS 305
+P V + +P P P P SS AS P P+T+
Sbjct: 1544 PKEALIPPAMTVPSPKKTPAIPTPKEAPATP----SSKEASSPPAVTPSTYK-------G 1592
Query: 306 SPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTS 355
+P P + L PP P P P + SPE+ P T +G PTS
Sbjct: 1593 APSPKELLI---PPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTS 1639
Score = 51.2 bits (121), Expect = 1e-06
Identities = 60/221 (27%), Positives = 84/221 (38%), Gaps = 24/221 (10%)
Query: 154 PSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSP-SHLTSKTPPPLYLPTEGRRSDLP 212
PS LG ++ Q++ P + + AGP + L SP S + + P L +G + D P
Sbjct: 794 PSPLGVSVSPQTKRPPTKKGS--AGPDTPIGNLSSPVSPVEASFLPENSLSFQGSK-DSP 850
Query: 213 GGLAGPRG----GLNTSRSLY----SGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWAR 264
P G T ++ G+ P TP P + + PF GP A A
Sbjct: 851 ATTHSPTPPSPKGAPTPSAVTPLSPKGVTLP-PKETPTPSVVNLPFPKEGPATPAPKQAP 909
Query: 265 RVPQPAAPPR--RPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAG 322
+ ++ P+ R + + AS P GAP P P P PP A
Sbjct: 910 ALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAAT 969
Query: 323 CPWPTAGPGRRSPGGT---------SPERSPGTARARGDPT 354
P P GP SP G SP+ P T +G PT
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPT 1010
Score = 45.1 bits (105), Expect = 1e-04
Identities = 56/227 (24%), Positives = 73/227 (32%), Gaps = 38/227 (16%)
Query: 132 PAAPAMPSPDVVYGALPPPGCDP-SGLGEALPAQSRPSP--FRPAAPKAGPPGLVHPLFS 188
PA P+P GA P P S G LP + P+P PK GP
Sbjct: 850 PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAP 909
Query: 189 PSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSF 248
+TS +P + R + P G+ +P P PP +
Sbjct: 910 ALSMTSSSPK------KARATPAPKGIPA----------------SPSPKGAPTPPAATP 947
Query: 249 PFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPG 308
P GGP + WA PP P S A+ P GAP +P + P
Sbjct: 948 PSPKGGPATPSPKWA------PTPPAATPPSPKGGPATPSPKGAP------TPPAATPPS 995
Query: 309 PWQSLCGLGPPCAGCPWPTAGPG-RRSPGGTSPERSPGTARARGDPT 354
P P A P P + SP T + T A P+
Sbjct: 996 PKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPS 1042
Score = 39.7 bits (91), Expect = 0.004
Identities = 55/216 (25%), Positives = 73/216 (33%), Gaps = 17/216 (7%)
Query: 98 PELEPDEGPEEPGEK-FRRLAGEGGDPALPRPRLYPAAPAM-PSPDVVYGALPPPGCDPS 155
P + P E P K + PA P P P PA+ PS A P DP
Sbjct: 1468 PAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPI 1527
Query: 156 GLGEALPAQSRPSPFRPAAPKAGPPGLV-HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG 214
L ++ P+ P P V P +P+ T K P P+ S P
Sbjct: 1528 APTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPAT--PSSKEASSPPAV 1585
Query: 215 LAGPRGGLNTSRSLY--SGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAP 272
G + + L + +P P PP + P GP P P
Sbjct: 1586 TPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPAT---------PAPKGT 1636
Query: 273 PRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPG 308
P PP + SSL S P A T + +P +S G
Sbjct: 1637 PTSPPVTPSSLKDSPTSP-ASVTCKMGATVPQASKG 1671
Score = 35.0 bits (79), Expect = 0.11
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 251 LPGGPPVGAEAWARRVPQPAAPPR-RPPQSASSLSASLRPPGA---PATFLRPSPIPCSS 306
+PG A + +PQP A P SA S++A+L PG P P P S+
Sbjct: 1 MPGEATETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSA 60
Query: 307 PG---PWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTS 355
P+ S + P+P + G P GT+PE G P S
Sbjct: 61 ANQASPFPSPSTIASTPLEVPFPQSSSGTALPLGTAPEAPTFLPNLIGPPIS 112
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 71.2 bits (173), Expect = 1e-12
Identities = 90/290 (31%), Positives = 104/290 (35%), Gaps = 32/290 (11%)
Query: 92 GIGLDGP-ELEPDEGPEEPGEKFRRLAGEGGD-PALPRPRLYPAAPAMPSPDVVYGALPP 149
G G P E P PE P R G G P P PR P PA P+P PP
Sbjct: 72 GAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRR-PLVPAGPAPPAAKLRPPP 130
Query: 150 PG----CDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH---PLFSPSHLTSKTPPPLYL 202
G C P A+ A P+P PA P AGP L P P P P
Sbjct: 131 EGSAGSCAPVPAAAAVAAGPEPAPAGPAKP-AGPAALAARAGPGPGPGPGPGPGPGPGKP 189
Query: 203 PTEGRRSDLPGGLA--------GPRGGL-NTSRSLYSGLQNPCSTATPGPPLGSFPFL-P 252
G L G A P L N + L P A PG + + PF+
Sbjct: 190 AGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKP---AAPGTVIQTPPFVGA 246
Query: 253 GGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQS 312
PP A P PAAP PP + + RPPG PA P + P P +
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAG---PPTAAPAVPPPAAA 303
Query: 313 LCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASSEK 362
G A P P AG P G S + PG A A P ++A S K
Sbjct: 304 QNGGSAGAAPAPAPAAG----GPAGVSGQPGPGAAAAAPAP-GVKAESPK 348
Score = 47.8 bits (112), Expect = 2e-05
Identities = 60/214 (28%), Positives = 76/214 (35%), Gaps = 38/214 (17%)
Query: 116 LAGEGGDPALPRPRLYPAAPA--MPSPDVVYGALPPPGCDPS---GLGEALPAQSRPSPF 170
L G LP P+ PAAP + +P V A PP PS A PA + P P
Sbjct: 217 LVNNGPAALLPLPK--PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Query: 171 RPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYS 230
A A PPG HP P+ + PP + GG AG
Sbjct: 275 PAPATLARPPG--HPAGPPTAAPAVPPPA---------AAQNGGSAG------------- 310
Query: 231 GLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPP 290
+ P P G + G P GA A A A P+R Q+A + +L
Sbjct: 311 ------AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAAS 364
Query: 291 GAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCP 324
G PA+ I + G S + PP G P
Sbjct: 365 G-PASTAASMVIGPTMQGALPSPAAVPPPAPGTP 397
Score = 33.1 bits (74), Expect = 0.40
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 31/168 (18%)
Query: 136 AMPSPDVVYGALPPPGCD-PSGLGEALPAQSRPSPFR-PAAPKAGPPGLVHPLFSPSHLT 193
A+PSP A+PPP P+GL + S R P A +G + +P+ L
Sbjct: 382 ALPSP----AAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSG----IRATLTPTVLA 433
Query: 194 SKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPG 253
+ P P PT + LP G+ R +N P L
Sbjct: 434 PRLPQPPQNPTNIQNFQLPPGMVLVRS------------ENGQLLMIPQQALAQMQAQAH 481
Query: 254 GPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSP 301
P A P+PA P PP S++ A PG P + +P
Sbjct: 482 AQPQTTMA-----PRPATPTSAPPVQISTVQA----PGTPIIARQVTP 520
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 69.3 bits (168), Expect = 5e-12
Identities = 74/244 (30%), Positives = 89/244 (36%), Gaps = 23/244 (9%)
Query: 126 PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPA---APKAGPPGL 182
PRP PA P P LP P P+G + +PAQ S PA AP+ GP
Sbjct: 897 PRPNPTPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQPQ 956
Query: 183 VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
HP PS PP LP + P GL +S Y P P
Sbjct: 957 PHPQPHPSQAFGPQPPQQPLPLQH-----PHLFPPQAPGLLPPQSPYPYAPQPGVLGQPP 1011
Query: 243 PPLGS--FPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPG---APATFL 297
PPL + +P P P+ A + A P P P P A + S RP G AP T
Sbjct: 1012 PPLHTQLYPG-PAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIR 1070
Query: 298 RPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQ 357
PS S+P P P P+ GPG P + E P R L
Sbjct: 1071 GPSSAGQSTP---------SPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADLLS 1121
Query: 358 ASSE 361
+S E
Sbjct: 1122 SSPE 1125
Score = 46.2 bits (108), Expect = 5e-05
Identities = 63/237 (26%), Positives = 76/237 (32%), Gaps = 54/237 (22%)
Query: 115 RLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPS---GLGEALPAQSRPSPFR 171
R G P P P LYPA P +V + P G S G+G
Sbjct: 806 RAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGVVSSPYVGVG------------- 852
Query: 172 PAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSG 231
PA P AG P P FS L P + ++ +P A
Sbjct: 853 PAPPVAGLPSAPPPQFSGPELAMAVRPAT-TTVDSIQAPIPSHTA--------------- 896
Query: 232 LQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPP--RRPPQSASSLSASLRP 289
P TP PP FP P P +P P P + P A +S P
Sbjct: 897 ---PRPNPTPAPPPPCFPVPPPQP----------LPTPYTYPAGAKQPIPAQHHFSSGIP 943
Query: 290 PGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCP------WPTAGPGRRSPGGTSP 340
G PA + P P P P P Q+ G PP P +P PG P P
Sbjct: 944 AGFPAPRIGPQPQPHPQPHPSQAF-GPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYP 999
Score = 32.3 bits (72), Expect = 0.69
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 255 PPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLC 314
PP G E+ +P PA PP P PA+ +PIP SSP P
Sbjct: 1509 PPGGLESPVASLPGPAEPPGLP----------------PASLPESTPIPSSSPPP----- 1547
Query: 315 GLGPPCAGCPWPTAGP 330
L P P P P
Sbjct: 1548 -LSSPLPEAPQPKEEP 1562
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPS--PFRPAAPKAGPP 180
+LP P P P P+ + P P P L LP +P P P AP +GPP
Sbjct: 1519 SLPGPAEPPGLPPASLPE----STPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGPP 1573
Score = 30.8 bits (68), Expect = 2.0
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 267 PQPAAP----PRR----------PPQSASSLSASL-RPPGAPATFLRPSPIPCSSPGPWQ 311
P+P AP PRR PP+ SL + P P TFL + P P+
Sbjct: 718 PRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLGSATPLHFPPSPFP 777
Query: 312 SLCGLGPPCAGCPWPT---AGPGR----RSPGGTSPERSPGTA 347
S G GP P P +GP + R+PG + +PG A
Sbjct: 778 SSTGPGPHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPA 820
Score = 29.3 bits (64), Expect = 5.8
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 218 PRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPF---LPGGPPVGAEAWARRVPQPA---- 270
P GGL + + G P PG P S P +P P + PQP
Sbjct: 1509 PPGGLESPVASLPGPAEP-----PGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPP 1563
Query: 271 ---APPRRPPQSASSLSASLRP 289
AP PP S+ L ASL P
Sbjct: 1564 VPEAPSSGPPSSSLELLASLTP 1585
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 66.6 bits (161), Expect = 3e-11
Identities = 71/239 (29%), Positives = 87/239 (36%), Gaps = 27/239 (11%)
Query: 123 PALPRPRLY--PAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
P+L P L P+ PA SP + A PPP P L P P +P A PP
Sbjct: 697 PSLAAPPLQVPPSPPA--SPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPP 754
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
V PL + L PP LP P A P L P A
Sbjct: 755 PRVPPLLAAPPLQVPPSPPASLPMSPLAK--PPPQAPP------------ALATPPLQAL 800
Query: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
P PP PG P A P PP+ PP A+ L PP PA+ +
Sbjct: 801 PSPPAS----FPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQV--PPSPPASPTLQA 854
Query: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGT--SPERSPGTARARGDPTSLQ 357
P +PGP S+ G A P P P RSP T P+ + ++ A P L+
Sbjct: 855 PRRPPTPGPDTSVSGPRLTLALAPGPPPPPS-RSPSSTLSGPDLAGHSSSATSTPEELR 912
Score = 56.2 bits (134), Expect = 4e-08
Identities = 77/280 (27%), Positives = 95/280 (33%), Gaps = 66/280 (23%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSP--FRPAAPKAGPPG 181
A P ++ P+ PA SP + A PPP P L A P Q PSP P +P A PP
Sbjct: 731 AAPPLQVPPSPPA--SPPMSPSATPPPRVPP--LLAAPPLQVPPSPPASLPMSPLAKPPP 786
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRS---------------DLPGGLAGPRGGLNTSR 226
P + L + PP P + S P LA P + S
Sbjct: 787 QAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSP 846
Query: 227 SLYSGLQNPCSTATPGP------PLGSFPFLPGGPP---------------VGAEAWARR 265
LQ P TPGP P + PG PP G + A
Sbjct: 847 PASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATS 906
Query: 266 VPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPW 325
P+ P+ ++ S PP A P+ S GP L G P A PW
Sbjct: 907 TPEELRGYDSGPEGGAAASP---PPDAELAACHPA---AWSRGPAPPLAFRGAPGAPLPW 960
Query: 326 PTA-GPGRR-----------------SPGGTSPERSPGTA 347
P A GPG +PG P SPGT+
Sbjct: 961 PPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTS 1000
Score = 54.7 bits (130), Expect = 1e-07
Identities = 68/228 (29%), Positives = 81/228 (35%), Gaps = 44/228 (19%)
Query: 126 PRPRLYPAAP-AMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
P P P +P P P+ PP P L P Q PSP P +P A PP
Sbjct: 566 PCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASP-PLQGLPSP--PLSPLATPPPQAP 622
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
P + PPL P S LA P + +++ LQ P S
Sbjct: 623 PXLAL--------PPLQAPPSPPASPPLSPLATPSPQAPNALAVHL-LQAPFSP------ 667
Query: 245 LGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPP--GAPATFLRPSP- 301
P PPV A P +PP PP S S+ S PP AP + PSP
Sbjct: 668 -------PPSPPVQA---------PFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPP 711
Query: 302 -----IPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSP 344
P ++P P PP P P A P SP T P R P
Sbjct: 712 ASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASP-PMSPSATPPPRVP 758
Score = 52.8 bits (125), Expect = 5e-07
Identities = 68/251 (27%), Positives = 83/251 (33%), Gaps = 39/251 (15%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL 182
P P P +PSP + A PPP P L A P P +P A P
Sbjct: 592 PQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQ 651
Query: 183 VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
+ L + PP P + S P S S Q P S A
Sbjct: 652 APNALAVHLLQAPFSPPPSPPVQAPFS--------PPASPPVSPSATPPSQAPPSLA--A 701
Query: 243 PPLGSFPFLPGGPPVGAEAW----------ARRVPQPAAPPRRPPQSASSLSASLRPP-- 290
PPL P P PP+ A A + P +PP PP S S+ PP
Sbjct: 702 PPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLL 761
Query: 291 GAPATFLRPSP------IPCSSPGPWQSLCGLGPPCAGCPWPTAG-PGR----------R 333
AP + PSP P + P P PP P P A PG+
Sbjct: 762 AAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPM 821
Query: 334 SPGGTSPERSP 344
SP T P ++P
Sbjct: 822 SPLATPPPQAP 832
Score = 49.3 bits (116), Expect = 5e-06
Identities = 69/229 (30%), Positives = 86/229 (37%), Gaps = 35/229 (15%)
Query: 132 PAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSH 191
P+ PA PD PP P L + P Q+ SP A P +HPL + S
Sbjct: 444 PSRPASTPPD------SPPLQAPLSLPASPPLQTSLSP---AVSPLSSPLTIHPLQALSS 494
Query: 192 LTSKTPPP-----LYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
L S +P + P E + S P L P L T L+N S A P
Sbjct: 495 LASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPP-----LENLPSLAPPPLQTA 549
Query: 247 SFPFLPGG---PPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS--- 300
S P PP A + P P P PP++ SS++ PP AP P
Sbjct: 550 SAPLTTPHLETPPCPAPCPLQAPPSPLTTP--PPETPSSIATP--PPQAPPALASPPLQG 605
Query: 301 -PIPCSSP---GPWQSLCGLG-PPCAGCPWPTAGPGRRSPGGTSPERSP 344
P P SP P Q+ L PP P P A P SP T ++P
Sbjct: 606 LPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASP-PLSPLATPSPQAP 653
Score = 46.6 bits (109), Expect = 4e-05
Identities = 66/263 (25%), Positives = 91/263 (34%), Gaps = 48/263 (18%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL 182
P+ P P AP PS LP P P P+Q+ PS P P PP L
Sbjct: 333 PSPPLATPLPLAPPSPSAPPSLQTLPSPPATP-------PSQAPPSMTTP--PMQAPPSL 383
Query: 183 --VHPLFSPSHLTSKT----PPPLYLPTEGRRSDLPGGLAGPRGGLNT-----SRSLYSG 231
+ P+ P LTS + P PL L + + L T +++ +
Sbjct: 384 QTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTS 443
Query: 232 LQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASS--------- 282
P ST PPL + LP PP+ P + P Q+ SS
Sbjct: 444 PSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAP 503
Query: 283 LSASLRPPGAPATFLRP----SPIPCSSPGPWQSLCGLGPP---------------CAGC 323
LS+ + PP + L P +P + P ++L L PP C
Sbjct: 504 LSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPC 563
Query: 324 PWPTAGPGRRSPGGTSPERSPGT 346
P P SP T P +P +
Sbjct: 564 PAPCPLQAPPSPLTTPPPETPSS 586
Score = 43.5 bits (101), Expect = 3e-04
Identities = 75/272 (27%), Positives = 93/272 (34%), Gaps = 52/272 (19%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDP-----SGLGEALPAQSRP--SPFRPAA- 174
P PRP P P+ V GA G P G+G A +S P P R A
Sbjct: 30 PGSPRP----PPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGT 85
Query: 175 ----PKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSR---- 226
P + PP +P + +P P+ P + PG L + GL S
Sbjct: 86 SSRNPASRPPASGRGERAPP-AKNTSPGPVSSPGRASGTTRPGPLG--QKGLRISAEETV 142
Query: 227 ------------SLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPR 274
+L +G + S TPG P S G E R P P+A PR
Sbjct: 143 ARGKATEAPKRSALSAGARRDTSGPTPGTP--SPAMARRSRAAGTEVGLPR-PAPSARPR 199
Query: 275 RPPQ----SASSLS---------ASLRPPGAPATFLRPSPIPCSSPG-PWQSLCGLGPPC 320
P + S SS S A+ R P A RP+ SS P S GP
Sbjct: 200 PPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 259
Query: 321 AGCPWPTAGPGRRSPGGTSPERSPGTARARGD 352
G P A P + P G R P R D
Sbjct: 260 RGTPRAPAHPSQPKPKGLQALRPPQVTPPRKD 291
Score = 41.2 bits (95), Expect = 0.001
Identities = 72/273 (26%), Positives = 88/273 (32%), Gaps = 42/273 (15%)
Query: 102 PDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEAL 161
P G P RR G + LPRP A A P P P G S +
Sbjct: 167 PTPGTPSPAMA-RRSRAAGTEVGLPRP----APSARPRP-------PTEGPRKSVSSASE 214
Query: 162 PAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGG 221
+ + PSP P AG GL P S S + PL P P PR
Sbjct: 215 HSTTEPSPAARRRPSAGG-GLQRPA---SRSLSSSATPLSSPARSG----PSARGTPRAP 266
Query: 222 LNTSRSLYSGLQ--NPCSTATP----GPPLGSFPFLPGGPPVGAEAWARRVPQP------ 269
+ S+ GLQ P P P LG P P + AR VP P
Sbjct: 267 AHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATP 326
Query: 270 --AAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPT 327
A P PP + A P P+ PSP P + P PP P
Sbjct: 327 LPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSP-PATPPSQ-------APPSMTTPPMQ 378
Query: 328 AGPGRRSPGGTSPERSPGTARARGDPTSLQASS 360
A P ++ S + + P+ L SS
Sbjct: 379 APPSLQTIPPIQVPHSLTSPSLQAPPSPLALSS 411
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 66.2 bits (160), Expect = 4e-11
Identities = 76/253 (30%), Positives = 90/253 (35%), Gaps = 37/253 (14%)
Query: 110 GEKFRRLAGEGGDPALPRPRLYPAA--------PAMPSPDVVYGALPPPGCDPSGLGEAL 161
G F R G GG L R P P P P G PP P +
Sbjct: 13 GGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQS-GPKPPIPPPPPHQQQQQ 71
Query: 162 PAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGG 221
P +P P +P P PP HP H + PPP P + + + G GP G
Sbjct: 72 PPPQQPPPQQPP-PHQPPP---HP---QPHQQQQPPPP---PQDSSKPVVAQG-PGPAPG 120
Query: 222 LNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAP----PRRPP 277
+ ++ S P + T G P GS P PP + P P P P PP
Sbjct: 121 VGSAPPASSSAP-PATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPP 179
Query: 278 QSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGG 337
Q+ PP PA P P P PGP G P G P P GPG +PGG
Sbjct: 180 QAGG-------PPPPPAAVPGPGPGPKQGPGPGGPKGGKMP---GGPKPGGGPGLSTPGG 229
Query: 338 --TSPERSPGTAR 348
P R G R
Sbjct: 230 HPKPPHRGGGEPR 242
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 65.5 bits (158), Expect = 7e-11
Identities = 56/188 (29%), Positives = 70/188 (37%), Gaps = 37/188 (19%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL 182
P +P P L P+ P P + +PPPG P + +LP P P+ AGPP
Sbjct: 531 PTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPP-- 588
Query: 183 VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
P+ P L+S PPP+ LP S P P
Sbjct: 589 --PVLPPPSLSSAGPPPV-LPPPSLSSTAP------------------------PPVMPL 621
Query: 243 PPLGSFPFLPGGPPVGAEAWARRVPQPAAPP-RRPPQSASSLSASLRPPGAPATFLRPSP 301
PPL S PG PP G VPQ P P +S S S + P P L P+P
Sbjct: 622 PPLSSATPPPGIPPPG-------VPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLPTP 674
Query: 302 IPCSSPGP 309
+ S P
Sbjct: 675 VSFGSAPP 682
Score = 44.3 bits (103), Expect = 2e-04
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 31/188 (16%)
Query: 116 LAGEGGDPALPRPRLYPAA--PAMPSPDV-------------VYGALPPPGCDPSGLGEA 160
L+ G P LP P L A P +P P + + A PPPG P G+ +
Sbjct: 582 LSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPGVPQG 641
Query: 161 LPAQSRPSPFRPAAPKAGP--PGLVHPLFSPSHLT-SKTPPPLYLPTEGRRSDLPGGLAG 217
+P Q +P PA+ P P P+ ++ PP Y P +S P
Sbjct: 642 IPPQLTAAPVPPASSSQSSQVPEKPRPALLPTPVSFGSAPPTTYHPP--LQSAGPSEQVN 699
Query: 218 PRGGLNTSRSLYSGLQNPC----STATPGPPLGSFPFLP---GG----PPVGAEAWARRV 266
+ L+ S YS + S+A P P+ + +P GG PP + + R
Sbjct: 700 SKAPLSKSALPYSSFSSDQGLGESSAAPSQPITAVKDMPVRSGGLLPDPPRSSYLESPRG 759
Query: 267 PQPAAPPR 274
P+ P R
Sbjct: 760 PRFDGPRR 767
Score = 42.7 bits (99), Expect = 5e-04
Identities = 53/191 (27%), Positives = 76/191 (39%), Gaps = 20/191 (10%)
Query: 123 PALPRPRLYPAAP-AMPSPDV---VYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG 178
P +P P + P+ P ++P P + + A PPP P L A P P P+
Sbjct: 558 PGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPP---PSLSSTA 614
Query: 179 PPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGL-AGPRGGLNTSRSLYSGLQNPCS 237
PP P+ L+S TPPP +P G +P L A P ++S+S + P
Sbjct: 615 PP----PVMPLPPLSSATPPP-GIPPPGVPQGIPPQLTAAPVPPASSSQSSQVP-EKPRP 668
Query: 238 TATPGP-PLGSFPFLPGGPPVGAEAWARRVPQPA-----APPRRPPQSASSLSASLRPPG 291
P P GS P PP+ + + +V A A P S L S P
Sbjct: 669 ALLPTPVSFGSAPPTTYHPPLQSAGPSEQVNSKAPLSKSALPYSSFSSDQGLGESSAAPS 728
Query: 292 APATFLRPSPI 302
P T ++ P+
Sbjct: 729 QPITAVKDMPV 739
Score = 33.9 bits (76), Expect = 0.24
Identities = 43/143 (30%), Positives = 47/143 (32%), Gaps = 19/143 (13%)
Query: 235 PCSTATPGPPLGSFPFLPGG--PPVGAEAWARRVPQPAAPPR----------RPPQSASS 282
P S P P P LP PPV A VP P PP PP S
Sbjct: 522 PYSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPS 581
Query: 283 LSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPG----GT 338
LS++ PP P L + P P P SL PP P P PG G
Sbjct: 582 LSSAGPPPVLPPPSLSSAGPPPVLPPP--SLSSTAPPPV-MPLPPLSSATPPPGIPPPGV 638
Query: 339 SPERSPGTARARGDPTSLQASSE 361
P A P S SS+
Sbjct: 639 PQGIPPQLTAAPVPPASSSQSSQ 661
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 230 SGLQNPCSTATPGPPLGSF-PFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLR 288
S LQN S PP GS+ P P G P G+ + +P+APP R + +
Sbjct: 1494 SRLQNTSSRPGMYPPPGSYRPPPPMGKPPGS------IVRPSAPPARSSVPVTRPPVPIP 1547
Query: 289 PPGAPATFLRPSPI 302
PP P P P+
Sbjct: 1548 PPPPPPPLPPPPPV 1561
Score = 33.5 bits (75), Expect = 0.31
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 132 PAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSP 169
P+AP +P P V + ++PPPG P G +P S+P P
Sbjct: 1603 PSAPVLPPPPV-HSSIPPPGPVPMG----MPPMSKPPP 1635
Score = 31.2 bits (69), Expect = 1.5
Identities = 54/192 (28%), Positives = 67/192 (34%), Gaps = 42/192 (21%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGAL-PPPGCDPSGLGEALPAQSRPSPFRPAA--PKAGPPG 181
LP P L P P MP YG PPP P G AL Q + + GPPG
Sbjct: 81 LPPPPL-PPPPVMPGGG--YGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPG 137
Query: 182 LV-----HPLFSP------------SHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNT 224
LV P SP S++ PPP Y P + LP P
Sbjct: 138 LVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPS----- 192
Query: 225 SRSLYSGLQNPCSTA--TPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSAS- 281
Q+P S + P P S ++++ +P A P RP Q S
Sbjct: 193 --------QSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSY---LPSSQASPSRPSQGHSK 241
Query: 282 SLSASLRPPGAP 293
S + PP AP
Sbjct: 242 SQLLAPPPPSAP 253
Score = 30.0 bits (66), Expect = 3.4
Identities = 51/224 (22%), Positives = 77/224 (34%), Gaps = 49/224 (21%)
Query: 108 EPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRP 167
E E+ +++ G +P + L P + + G PPPG
Sbjct: 1468 EQKEQLQKMKDFGSEPQMA-DHLPPQESRLQNTSSRPGMYPPPGS--------------- 1511
Query: 168 SPFRPAAPKAGPPG-LVHPLFSPSHLT-SKTPPPLYLPTEGRRSDLPG------------ 213
+RP P PPG +V P P+ + T PP+ +P LP
Sbjct: 1512 --YRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLPPPPPVIKPQTSAV 1569
Query: 214 -----------GL--AGPRGGLNTS-RSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGA 259
GL GLN+ +S + + P + P PP+ S PG P+G
Sbjct: 1570 EQERWDEDSFYGLWDTNDEQGLNSEFKSETAAI--PSAPVLPPPPVHSSIPPPGPVPMGM 1627
Query: 260 EAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIP 303
++ P + S+ P G T LRP P+P
Sbjct: 1628 PPMSKPPPVQQTVDYGHGRDISTNKVEQIPYGERIT-LRPDPLP 1670
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 63.9 bits (154), Expect = 2e-10
Identities = 80/285 (28%), Positives = 95/285 (33%), Gaps = 37/285 (12%)
Query: 104 EGPEEPGEKFRRLAGEGGDPALP------RPRLYPAAPAMPSPDVVYGALPPPGCDPSGL 157
+GP G+K R G P P +P+ P P P G P G P G
Sbjct: 99 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 158
Query: 158 GEALPAQ----SRPSPFRPAAPKAGPP-GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLP 212
+ P Q SR S P P+ PP G P P PP P G + P
Sbjct: 159 PQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP---PQGGNKPQGP 215
Query: 213 GGLAGPRG----GLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQ 268
P+G G N S+S S P G P P G P G PQ
Sbjct: 216 PPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 275
Query: 269 PAAPPRRP----PQSASSLSASLRPPGAPATFLRPSPI-------PCSSPGPWQSLCGLG 317
PP +P PQ S +S PPG P P P P PG Q G
Sbjct: 276 GPPPPGKPQGPPPQGGSKSRSSRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQ-----G 327
Query: 318 PPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASSEK 362
PP G P P P G P+ + AR P Q ++
Sbjct: 328 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQ 372
Score = 52.8 bits (125), Expect = 5e-07
Identities = 70/275 (25%), Positives = 87/275 (31%), Gaps = 33/275 (12%)
Query: 98 PELEPDEGPEEPGEKFRRLAGEGGDPALP------RPRLYPAAPAMPSPDVVYGALPPPG 151
P +P P + K R G P P +P+ P P P G P G
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Query: 152 CDPSGLGEALPAQ----SRPSPFRPAAPKAGPP-GLVHPLFSPSHLTSKTPPPLYLPTEG 206
P G + P Q S+ + P P+ PP G P P PP P G
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP---PQGG 271
Query: 207 RRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSF--------PFLPGGPPVG 258
+ P P+G S ++P PP G P P GPP
Sbjct: 272 NKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 331
Query: 259 AEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGP 318
+ P P P PPQ S ++ PPG P P ++P G P
Sbjct: 332 GGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQ---GPPQQEGNNPQ------GPPP 382
Query: 319 PCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
P G P P P G P R P R P
Sbjct: 383 PAGGNPQQPQAPPAGQPQG--PPRPPQGGRPSRPP 415
Score = 50.8 bits (120), Expect = 2e-06
Identities = 66/228 (28%), Positives = 78/228 (34%), Gaps = 24/228 (10%)
Query: 139 SPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP-GLVHPLFSPSHLTSKTP 197
SP ++ G P G P G + Q PSP P P+ PP G P P
Sbjct: 28 SPSLIAGN--PQGAPPQGGNKP---QGPPSP--PGKPQGPPPQGGNQPQGPPPPPGKPQG 80
Query: 198 PPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPV 257
PP + + PG GP + SRS S P G P P G P
Sbjct: 81 PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 140
Query: 258 GAEAWARRVPQPAAPPRR----PPQSASSLSASLRPPGAPATFLRPSPIPCSSP-GPWQS 312
G PQ PP + PPQ + +S PPG P P P + P GP
Sbjct: 141 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQ---GPPPQGGNQPQGP--- 194
Query: 313 LCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASS 360
PP G P G P G P P +GD S A S
Sbjct: 195 -----PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARS 237
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 63.5 bits (153), Expect = 3e-10
Identities = 73/261 (27%), Positives = 94/261 (36%), Gaps = 38/261 (14%)
Query: 105 GPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQ 164
GP +K A G +P P PA P P + G +P P PS + +P
Sbjct: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP 138
Query: 165 SR-----PSPFRPAAPK--AGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAG 217
P PFR P +GP + P+ P + P P+ P G +PG ++G
Sbjct: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGP--FSGPNPGPIPGPNPG---PIPGPISG 193
Query: 218 PRGG---LNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPR 274
P G + + + P S PGP G P GP G P P P
Sbjct: 194 PIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPG 253
Query: 275 RPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGR-R 333
P P P + P P P PGP + L G P P PGR R
Sbjct: 254 PIP----------GPISGPGPIIGPIPSPAQIPGPGR-LQG--------PGPILSPGRMR 294
Query: 334 SPG---GTSPERSPGTARARG 351
SPG G +P PG+ G
Sbjct: 295 SPGSLPGLAPILGPGSGPGSG 315
Score = 42.4 bits (98), Expect = 7e-04
Identities = 53/199 (26%), Positives = 75/199 (37%), Gaps = 31/199 (15%)
Query: 95 LDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDP 154
+ GP P+ GP PG + G P +P P P +P P + G P G +P
Sbjct: 167 ISGPFSGPNPGPI-PGPNPGPIPGPISGP-IPGPISVPIPGPIPGP--ISG--PISGPNP 220
Query: 155 SGLGEALPAQ-SRPSPFRPAAPKAGP-PGLVH-----PLFSPSHLTSKTPPPLYLPTEGR 207
+ +P S P+P P +GP PGL+ P+ P + P P +P
Sbjct: 221 GPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPG--- 277
Query: 208 RSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVP 267
PG L GP + +P +PG G P L G G+ + +P
Sbjct: 278 ----PGRLQGP-----------GPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIP 322
Query: 268 QPAAPPRRPPQSASSLSAS 286
P + P P S AS
Sbjct: 323 GPGSLPAPAPLWPQSPDAS 341
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 62.0 bits (149), Expect = 8e-10
Identities = 96/309 (31%), Positives = 108/309 (34%), Gaps = 78/309 (25%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALP----------RPRLYPAAPAMPSPD 141
GL GP+ EP P PG K G GDP LP +P L P P P P
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGIK-----GSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPP 1130
Query: 142 VVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP-------KAGPPGLVHPLFSPSHLTS 194
G PPG +P GE P P +P P + G PG P
Sbjct: 1131 GPKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 195 KTPPPLYLP-TEGRRSD--LPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
P P LP G++ D LPG GL GP+G + G+Q P PGPP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG--EPGFHGFPGVQGP-----PGPPGS 1242
Query: 247 SFPFLPGGPPVGAEAWARRVPQPAAPPRRP-PQSASSLSASLRPPGAPATFLRPSPIPCS 305
P L G P G P P PP RP P L PPG P I
Sbjct: 1243 PGPALEG--PKGN-------PGPQGPPGRPGPTGFQGLPGPEGPPGLPGN----GGIKGE 1289
Query: 306 SPGPWQ----SLCGL----GPP-------------CAGCPWPTAGPGRRSPGGTSPERSP 344
P Q L GL GPP G P PG PG P P
Sbjct: 1290 KGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPG--FPGMKGPSGVP 1347
Query: 345 GTARARGDP 353
G+A G+P
Sbjct: 1348 GSAGPEGEP 1356
Score = 51.6 bits (122), Expect = 1e-06
Identities = 83/297 (27%), Positives = 97/297 (32%), Gaps = 50/297 (16%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA------------PAMPS 139
G+ D EL P PG G+ G P LP P+ P P +P
Sbjct: 555 GMKGDKGELGSPGAPGLPG--LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 140 PDVVYGALPPPGCDPSG-LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
G + PPG P G +GE + A G PG+ P P ++
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGE--------KGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 199 PLYLPTEGRRSD--LPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPP-LGSFPFL 251
P GR D LPG GL G G G+ S+ G PGPP FP +
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK----GEPGIPGIGLPGPPGPKGFPGI 720
Query: 252 PGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPAT-----FLRPS-----P 301
PG P + P PP P A PPG P L P P
Sbjct: 721 PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP 780
Query: 302 IPCSSPGPWQSLCGLGPPCA-----GCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
P PG L GL P G P P PG G P PG G P
Sbjct: 781 GPPGPPGR-TGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQP 836
Score = 51.6 bits (122), Expect = 1e-06
Identities = 77/283 (27%), Positives = 100/283 (35%), Gaps = 56/283 (19%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGD-----------PALPRPRLYPAAPAMPSPDV 142
G++GP P P +PG L G+ GD P LP P+ P P P
Sbjct: 1039 GVEGPP-GPSGVPGQPGSP--GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Query: 143 VYGALPPPGCDPSGLGEALPAQSRPS-PFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLY 201
+ G++ PG GL A+ +P P P P GPPG P ++ PP
Sbjct: 1096 IKGSVGDPGL--PGLPGTPGAKGQPGLPGFPGTP--GPPG-------PKGISG---PPGN 1141
Query: 202 LPTEGRRSDLPG----GLAGPRGGLNTSRSLYSGLQNPC-STATPGPPLGSFPFLPGGPP 256
G + G G GP G + G+ P PG P P PG P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPG--EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 257 VGAEAWARRVP----QPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPI---PCSSPGP 309
+ + +P P P + PPG P + P P P +PGP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGS---PGPALEGPKGNPGP 1256
Query: 310 WQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGD 352
GPP G P PT G PG P PG +G+
Sbjct: 1257 ------QGPP--GRPGPTGFQG--LPGPEGPPGLPGNGGIKGE 1289
Score = 46.6 bits (109), Expect = 4e-05
Identities = 86/299 (28%), Positives = 96/299 (32%), Gaps = 82/299 (27%)
Query: 94 GLDGPELEP-------DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
G GPE P D+G P PG K G G P LP P P MP D G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPPGPK-----GIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSP-SHLTSKTPPPLYLP 203
PGC+ + P SP P GPPG+ P S + S P P P
Sbjct: 118 PQGIPGCNGTKGERGFPG----SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 204 TEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWA 263
G GP G GL P T PG P+G P GPP
Sbjct: 174 ----------GYPGPPG--------IQGLPGP--TGIPG-PIG-----PPGPP------- 200
Query: 264 RRVPQPAAPPRRP------------PQSASSLSASLRPPGAPATFL-RPSPIPCSSPGPW 310
+ P PP P P+ PPG P + PI
Sbjct: 201 -GLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGD 259
Query: 311 QSLCG-LGPP----CAGCPWPTAG----------PGRR-SPGGTSPERSPGTARARGDP 353
Q L G GPP G P P G PG+R PG PG GDP
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDP 318
Score = 44.7 bits (104), Expect = 1e-04
Identities = 70/255 (27%), Positives = 89/255 (34%), Gaps = 64/255 (25%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQS 165
P +PG+ L+G+ G P P P+ P P P G + PPG L +
Sbjct: 987 PGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQP------GLIGPPG-----LKGTIGDMG 1033
Query: 166 RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG-------GLAGP 218
P P GPPG PS + + P +G + D PG GL GP
Sbjct: 1034 FPGP----QGVEGPPG-------PSGVPGQPGSPGLPGQKGDKGD-PGISSIGLPGLPGP 1081
Query: 219 RGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQ 278
+G Y G NP + G P P LPG P + P PP P+
Sbjct: 1082 KG--EPGLPGYPG--NPGIKGSVGDP--GLPGLPGTPGAKGQPGLPGFPGTPGPPG--PK 1133
Query: 279 SASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGT 338
S PPG P P P+ G G P G P P G+ G
Sbjct: 1134 GISG------PPGNPGLPGEPGPVG-----------GGGHP--GQPGPPGEKGKPGQDGI 1174
Query: 339 SPERSPGTARARGDP 353
PG A +G+P
Sbjct: 1175 -----PGPAGQKGEP 1184
Score = 43.1 bits (100), Expect = 4e-04
Identities = 76/283 (26%), Positives = 88/283 (31%), Gaps = 53/283 (18%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G + EP + P + GE G+ G P LP YP P G PPG
Sbjct: 286 GEKGEQGEPGKRGKPGKDGEN-----GQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 152 CDPSGLGEALPAQSRPSPFRPAAPKA--GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
P GL +P RP K G PGL + PP L P
Sbjct: 341 --PPGL--VIP---RPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 210 DLPG--GLAGPRGGLNTSRSLYSGLQNPCSTATPGPP-LGSFPFLPGGPPVGAEAWARRV 266
PG G G RG G + P + PGPP L P PG P
Sbjct: 394 GPPGPPGFPGERG--------QKGDEGPPGISIPGPPGLDGQPGAPGLPG---------- 435
Query: 267 PQPAAPPRRPPQSASSLSASLRPPGAPA----------------TFLRPSPIPCSSPGPW 310
P A P PP PPG+P T S P
Sbjct: 436 PPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 311 QSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
L GL P +P + G T P+ PG A G P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAP 538
Score = 32.0 bits (71), Expect = 0.90
Identities = 46/162 (28%), Positives = 54/162 (33%), Gaps = 28/162 (17%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL GP P G P + + G+ G P +P P P + G PPG D
Sbjct: 1357 GLIGPPGPP--GLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPG-D 1413
Query: 154 PSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG 213
P G LP F A + G PGL P PP P
Sbjct: 1414 PGRNG--LPG------FDGAGGRKGDPGLPG---QPGTRGLDGPPG------------PD 1450
Query: 214 GLAGPRGGLNTSRSLYSGLQNPCSTATPGP--PLGSFPFLPG 253
GL GP G TS + L S T P P G+ G
Sbjct: 1451 GLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTLQVYEG 1492
Score = 30.8 bits (68), Expect = 2.0
Identities = 37/122 (30%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 243 PPLGSFPFLPGGPPVGAEAWARRVPQPAAPP--RRPPQSASSLSASLRPPGAPATFLRPS 300
P L FP G P + +P P P R PP PG P T P
Sbjct: 59 PGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGL----------PGFPGTPGLPG 108
Query: 301 -PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS-PGGTSPERSPGTARARGDPTSLQA 358
P +PGP Q + P C G PG PG P PG +G+P S+
Sbjct: 109 MPGHDGAPGP-QGI----PGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIM 163
Query: 359 SS 360
SS
Sbjct: 164 SS 165
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 60.8 bits (146), Expect = 2e-09
Identities = 76/252 (30%), Positives = 89/252 (35%), Gaps = 48/252 (19%)
Query: 126 PRPRLYPAAPAM-----PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
PR + P AP P P LP P P S PSPF A PP
Sbjct: 359 PREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP-----PHLSGPSPFSMNANLPPPP 413
Query: 181 GLVHPLFSPS--HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSL----YSGLQN 234
L PL S S H S PPPL L + + LP A P G L S++L S
Sbjct: 414 AL-KPLSSLSTHHPPSAHPPPLQLMPQSQ--PLPSSPAQPPG-LTQSQNLPPPPASHPPT 469
Query: 235 PCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPA 294
P PP PF+PGGPP P PP P S PP P
Sbjct: 470 GLHQVAPQPPFAQHPFVPGGPP------------PITPPTCPSTST--------PPAGPG 509
Query: 295 TFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS-PGGTSPERSPGTARARG-D 352
T +P PCS G + CP PT + PE P R+ +
Sbjct: 510 TSAQP---PCSGAAASGGSIAGG---SSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPE 563
Query: 353 PTSLQASSEKTQ 364
PT + S +Q
Sbjct: 564 PTVVDTPSHASQ 575
Score = 41.6 bits (96), Expect = 0.001
Identities = 68/234 (29%), Positives = 82/234 (35%), Gaps = 35/234 (14%)
Query: 123 PAL-PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPG 181
PAL P+ P P PSP L PS A P P P + +AGP
Sbjct: 250 PALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPL- 308
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG----LAGPRGGLN--TSRSLYSGLQNP 235
L HP P P LP + + P G A P L S+S Q P
Sbjct: 309 LQHP---------GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPP 359
Query: 236 CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAA---PPRRPPQSASSLSASLRPPGA 292
P PL P PP ++P P A PP S S++A+L PP A
Sbjct: 360 REQPLPPAPLAMPHIKP--PPTTP---IPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 414
Query: 293 --PATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSP 344
P + L P + P P Q L P P A P PG T + P
Sbjct: 415 LKPLSSLSTHHPPSAHPPPLQ----LMPQSQPLPSSPAQP----PGLTQSQNLP 460
Score = 38.1 bits (87), Expect = 0.012
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 35/165 (21%)
Query: 230 SGLQNPCSTATPGPPL----GSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSA 285
+G+ S+A PG P G P PP G+ ++ QP AP P + +
Sbjct: 191 TGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 250
Query: 286 SLRPPGAPATFLRPSPIPCSSP-GPWQSLCG-LGPPCA-----------GCPWP---TAG 329
+L P P+ P P P SP P Q L G G P A G P P AG
Sbjct: 251 ALHPQRPPS----PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAG 306
Query: 330 PGRRSPG-----GTSPERSPGTARARGDP------TSLQASSEKT 363
P + PG G P+ S G A P TSLQ + ++
Sbjct: 307 PLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQS 351
Score = 33.5 bits (75), Expect = 0.31
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 34/158 (21%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P+ + P++PA P LPPP PA P+ AP+ PP H
Sbjct: 437 MPQSQPLPSSPAQPPGLTQSQNLPPP-----------PASHPPTGLHQVAPQ--PPFAQH 483
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS-TATPGP 243
P F P PPP+ PT S P AGP + Q PCS A G
Sbjct: 484 P-FVPG-----GPPPITPPTCPSTSTPP---AGPG----------TSAQPPCSGAAASGG 524
Query: 244 PLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSAS 281
+ P E +P +PP PP+S S
Sbjct: 525 SIAGGSSCPLPTVQIKEEALDDAEEPESPP-PPPRSPS 561
Score = 31.6 bits (70), Expect = 1.2
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 75 PHESRTNTDILETLKRRGIGLDGPELEPDEG-PEEPGEK---FRRLAGEGGDPALPRPRL 130
PH + L L+R + L GP+L P+ P+ + R+A DP L R ++
Sbjct: 807 PHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDP-LARLQM 865
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG----PPG-LVHP 185
+ P ++ L DP G A P P A P PPG L +P
Sbjct: 866 FNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPL-TAGPHLARFPYPPGTLPNP 924
Query: 186 LF-SPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
L P H P++ R DLPG + P + +++++ A
Sbjct: 925 LLGQPPHEHEMLRHPVFGTPYPR--DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQW 982
Query: 245 LGSFPFLPGG 254
L P + GG
Sbjct: 983 LHGHPHMHGG 992
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 60.8 bits (146), Expect = 2e-09
Identities = 76/252 (30%), Positives = 89/252 (35%), Gaps = 48/252 (19%)
Query: 126 PRPRLYPAAPAM-----PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
PR + P AP P P LP P P S PSPF A PP
Sbjct: 913 PREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP-----PHLSGPSPFSMNANLPPPP 967
Query: 181 GLVHPLFSPS--HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSL----YSGLQN 234
L PL S S H S PPPL L + + LP A P G L S++L S
Sbjct: 968 AL-KPLSSLSTHHPPSAHPPPLQLMPQSQ--PLPSSPAQPPG-LTQSQNLPPPPASHPPT 1023
Query: 235 PCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPA 294
P PP PF+PGGPP P PP P S PP P
Sbjct: 1024 GLHQVAPQPPFAQHPFVPGGPP------------PITPPTCPSTST--------PPAGPG 1063
Query: 295 TFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS-PGGTSPERSPGTARARG-D 352
T +P PCS G + CP PT + PE P R+ +
Sbjct: 1064 TSAQP---PCSGAAASGGSIAGG---SSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPE 1117
Query: 353 PTSLQASSEKTQ 364
PT + S +Q
Sbjct: 1118 PTVVDTPSHASQ 1129
Score = 41.6 bits (96), Expect = 0.001
Identities = 68/234 (29%), Positives = 82/234 (35%), Gaps = 35/234 (14%)
Query: 123 PAL-PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPG 181
PAL P+ P P PSP L PS A P P P + +AGP
Sbjct: 804 PALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPL- 862
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG----LAGPRGGLN--TSRSLYSGLQNP 235
L HP P P LP + + P G A P L S+S Q P
Sbjct: 863 LQHP---------GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPP 913
Query: 236 CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAA---PPRRPPQSASSLSASLRPPGA 292
P PL P PP ++P P A PP S S++A+L PP A
Sbjct: 914 REQPLPPAPLAMPHIKP--PPTTP---IPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 293 --PATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSP 344
P + L P + P P Q L P P A P PG T + P
Sbjct: 969 LKPLSSLSTHHPPSAHPPPLQ----LMPQSQPLPSSPAQP----PGLTQSQNLP 1014
Score = 38.1 bits (87), Expect = 0.012
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 35/165 (21%)
Query: 230 SGLQNPCSTATPGPPL----GSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSA 285
+G+ S+A PG P G P PP G+ ++ QP AP P + +
Sbjct: 745 TGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 804
Query: 286 SLRPPGAPATFLRPSPIPCSSP-GPWQSLCG-LGPPCA-----------GCPWP---TAG 329
+L P P+ P P P SP P Q L G G P A G P P AG
Sbjct: 805 ALHPQRPPS----PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAG 860
Query: 330 PGRRSPG-----GTSPERSPGTARARGDP------TSLQASSEKT 363
P + PG G P+ S G A P TSLQ + ++
Sbjct: 861 PLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQS 905
Score = 33.5 bits (75), Expect = 0.31
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 34/158 (21%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P+ + P++PA P LPPP PA P+ AP+ PP H
Sbjct: 991 MPQSQPLPSSPAQPPGLTQSQNLPPP-----------PASHPPTGLHQVAPQ--PPFAQH 1037
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS-TATPGP 243
P F P PPP+ PT S P AGP + Q PCS A G
Sbjct: 1038 P-FVPG-----GPPPITPPTCPSTSTPP---AGPG----------TSAQPPCSGAAASGG 1078
Query: 244 PLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSAS 281
+ P E +P +PP PP+S S
Sbjct: 1079 SIAGGSSCPLPTVQIKEEALDDAEEPESPP-PPPRSPS 1115
Score = 31.6 bits (70), Expect = 1.2
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 75 PHESRTNTDILETLKRRGIGLDGPELEPDEG-PEEPGEK---FRRLAGEGGDPALPRPRL 130
PH + L L+R + L GP+L P+ P+ + R+A DP L R ++
Sbjct: 1361 PHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDP-LARLQM 1419
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG----PPG-LVHP 185
+ P ++ L DP G A P P A P PPG L +P
Sbjct: 1420 FNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPL-TAGPHLARFPYPPGTLPNP 1478
Query: 186 LF-SPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
L P H P++ R DLPG + P + +++++ A
Sbjct: 1479 LLGQPPHEHEMLRHPVFGTPYPR--DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQW 1536
Query: 245 LGSFPFLPGG 254
L P + GG
Sbjct: 1537 LHGHPHMHGG 1546
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 60.8 bits (146), Expect = 2e-09
Identities = 76/252 (30%), Positives = 89/252 (35%), Gaps = 48/252 (19%)
Query: 126 PRPRLYPAAPAM-----PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
PR + P AP P P LP P P S PSPF A PP
Sbjct: 913 PREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP-----PHLSGPSPFSMNANLPPPP 967
Query: 181 GLVHPLFSPS--HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSL----YSGLQN 234
L PL S S H S PPPL L + + LP A P G L S++L S
Sbjct: 968 AL-KPLSSLSTHHPPSAHPPPLQLMPQSQ--PLPSSPAQPPG-LTQSQNLPPPPASHPPT 1023
Query: 235 PCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPA 294
P PP PF+PGGPP P PP P S PP P
Sbjct: 1024 GLHQVAPQPPFAQHPFVPGGPP------------PITPPTCPSTST--------PPAGPG 1063
Query: 295 TFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS-PGGTSPERSPGTARARG-D 352
T +P PCS G + CP PT + PE P R+ +
Sbjct: 1064 TSAQP---PCSGAAASGGSIAGG---SSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPE 1117
Query: 353 PTSLQASSEKTQ 364
PT + S +Q
Sbjct: 1118 PTVVDTPSHASQ 1129
Score = 41.6 bits (96), Expect = 0.001
Identities = 68/234 (29%), Positives = 82/234 (35%), Gaps = 35/234 (14%)
Query: 123 PAL-PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPG 181
PAL P+ P P PSP L PS A P P P + +AGP
Sbjct: 804 PALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPL- 862
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG----LAGPRGGLN--TSRSLYSGLQNP 235
L HP P P LP + + P G A P L S+S Q P
Sbjct: 863 LQHP---------GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPP 913
Query: 236 CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAA---PPRRPPQSASSLSASLRPPGA 292
P PL P PP ++P P A PP S S++A+L PP A
Sbjct: 914 REQPLPPAPLAMPHIKP--PPTTP---IPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 293 --PATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSP 344
P + L P + P P Q L P P A P PG T + P
Sbjct: 969 LKPLSSLSTHHPPSAHPPPLQ----LMPQSQPLPSSPAQP----PGLTQSQNLP 1014
Score = 38.1 bits (87), Expect = 0.012
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 35/165 (21%)
Query: 230 SGLQNPCSTATPGPPL----GSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSA 285
+G+ S+A PG P G P PP G+ ++ QP AP P + +
Sbjct: 745 TGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 804
Query: 286 SLRPPGAPATFLRPSPIPCSSP-GPWQSLCG-LGPPCA-----------GCPWP---TAG 329
+L P P+ P P P SP P Q L G G P A G P P AG
Sbjct: 805 ALHPQRPPS----PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAG 860
Query: 330 PGRRSPG-----GTSPERSPGTARARGDP------TSLQASSEKT 363
P + PG G P+ S G A P TSLQ + ++
Sbjct: 861 PLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQS 905
Score = 33.5 bits (75), Expect = 0.31
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 34/158 (21%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P+ + P++PA P LPPP PA P+ AP+ PP H
Sbjct: 991 MPQSQPLPSSPAQPPGLTQSQNLPPP-----------PASHPPTGLHQVAPQ--PPFAQH 1037
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS-TATPGP 243
P F P PPP+ PT S P AGP + Q PCS A G
Sbjct: 1038 P-FVPG-----GPPPITPPTCPSTSTPP---AGPG----------TSAQPPCSGAAASGG 1078
Query: 244 PLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSAS 281
+ P E +P +PP PP+S S
Sbjct: 1079 SIAGGSSCPLPTVQIKEEALDDAEEPESPP-PPPRSPS 1115
Score = 31.6 bits (70), Expect = 1.2
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 75 PHESRTNTDILETLKRRGIGLDGPELEPDEG-PEEPGEK---FRRLAGEGGDPALPRPRL 130
PH + L L+R + L GP+L P+ P+ + R+A DP L R ++
Sbjct: 1361 PHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDP-LARLQM 1419
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG----PPG-LVHP 185
+ P ++ L DP G A P P A P PPG L +P
Sbjct: 1420 FNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPL-TAGPHLARFPYPPGTLPNP 1478
Query: 186 LF-SPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
L P H P++ R DLPG + P + +++++ A
Sbjct: 1479 LLGQPPHEHEMLRHPVFGTPYPR--DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQW 1536
Query: 245 LGSFPFLPGG 254
L P + GG
Sbjct: 1537 LHGHPHMHGG 1546
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 60.5 bits (145), Expect = 2e-09
Identities = 65/236 (27%), Positives = 88/236 (37%), Gaps = 26/236 (11%)
Query: 126 PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHP 185
P P L P PSP GA P + + P+ + + A+P P ++ P
Sbjct: 1602 PAPPLAPLPVLAPSP----GAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAP 1657
Query: 186 LFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP-------CST 238
+ + L + P PL P + L LA GG + S++L G NP +
Sbjct: 1658 SSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLS 1717
Query: 239 ATPGPPLGSFP----FLPGGPPVGAEAWARRVPQPAAPPRRPPQSA---------SSLSA 285
TP L P L GPP+G P P P P A +S SA
Sbjct: 1718 LTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSA 1777
Query: 286 SLRPPGAPATF-LRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSP 340
SL P + T L P+P+P P Q+L L P P A S G +P
Sbjct: 1778 SLLAPASVQTLTLSPAPVPTLGPAAAQTL-ALAPASTQSPASQASSLVVSASGAAP 1832
Score = 52.8 bits (125), Expect = 5e-07
Identities = 71/252 (28%), Positives = 87/252 (34%), Gaps = 50/252 (19%)
Query: 128 PRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLF 187
P L P PA P P +L P G PS L + PS P G P L+ P
Sbjct: 1478 PPLAPVVPAAPGPP----SLAPSGASPSASALTLGLATAPSLSSSQTP--GHPLLLAP-- 1529
Query: 188 SPSH---LTSKTPP---PLYLPTEGRRSDLPGG---------LAGPRGG----LNTSRSL 228
+ SH L S P P+ +P S P L P L T +
Sbjct: 1530 TSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLLAPASSASQALATPLAP 1589
Query: 229 YSGLQNPCSTATPGPPLGSFPFL---PGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSA 285
+ Q +P PPL P L PG PV A + Q P P + + A
Sbjct: 1590 MAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASS------QTPVPVMAPSSTPGTSLA 1643
Query: 286 SLRPPGAPATFLRPS----------PIPCSSPGPWQSLC---GLGPPCAG-CPWPTAGPG 331
S P AP L PS P P SP Q+L L P G P T G
Sbjct: 1644 SASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLG 1703
Query: 332 RRSPGGTSPERS 343
+P G P ++
Sbjct: 1704 TGNPQGPFPTQT 1715
Score = 42.7 bits (99), Expect = 5e-04
Identities = 67/247 (27%), Positives = 92/247 (37%), Gaps = 33/247 (13%)
Query: 121 GDPAL--PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSP-FRPAAPKA 177
G PA+ PRP L P +P+P + P P P+ + L PSP +AP A
Sbjct: 1337 GLPAVLNPRPTLTPGR--LPTPTLGTARAPMP--TPTLVRPLLKLVHSPSPEVSASAPGA 1392
Query: 178 GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS 237
P + PL PS L P+ +P LA P ++++ S+ P S
Sbjct: 1393 APLTISSPLHVPSSLPGPASSPMPIPNS-------SPLASP---VSSTVSVPLSSSLPIS 1442
Query: 238 TATPGPPLGSFPF-LPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATF 296
T P S P +P P+ A + PP P A+ SL P GA +
Sbjct: 1443 VPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSA 1502
Query: 297 ------LRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS--PGGTSPERSPGTAR 348
L +P SS P G P P + PG S SP P +A
Sbjct: 1503 SALTLGLATAPSLSSSQTP-------GHPLLLAPTSSHVPGLNSTVAPACSPVLVPASAL 1555
Query: 349 ARGDPTS 355
A P++
Sbjct: 1556 ASPFPSA 1562
Score = 38.1 bits (87), Expect = 0.012
Identities = 47/179 (26%), Positives = 65/179 (36%), Gaps = 28/179 (15%)
Query: 126 PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHP 185
PR L P P P P A P PG P L +L + P+ P P + PPG
Sbjct: 1015 PRAPLGPV-PVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAG-PPLIPASRPPG---- 1068
Query: 186 LFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLN-TSRSLYSGLQNPCSTATPGPP 244
P L P + LP L P G L+ TSR P + P PP
Sbjct: 1069 ------------PVLLPPLQPNSGSLPQVLPSPLGVLSGTSRP-----PTPTLSLKPTPP 1111
Query: 245 LGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIP 303
+ L PP G+ + + P P P +A++ +++ P+P P
Sbjct: 1112 --APVRLSPAPPPGSSSLLK--PLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAP 1166
Score = 36.2 bits (82), Expect = 0.047
Identities = 43/170 (25%), Positives = 58/170 (34%), Gaps = 27/170 (15%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+PRP P +P + +P P P + P P P+ P PP +
Sbjct: 2436 VPRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPNPITILPVHILPSPP---PPSQIP 2492
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
P SP + TPPP P +T + L P S GPP
Sbjct: 2493 PCSSP----ACTPPPACTPPPA----------------HTPPPAQTCLVTPSSPLLLGPP 2532
Query: 245 ----LGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPP 290
S LP G AE A+ + P + S+ + S SL PP
Sbjct: 2533 SVPISASVTNLPLGLRPEAELCAQALASPESLELASVASSETSSLSLVPP 2582
Score = 35.4 bits (80), Expect = 0.081
Identities = 37/127 (29%), Positives = 45/127 (35%), Gaps = 31/127 (24%)
Query: 265 RVPQPAAPPRRPPQSASSLSASL--RPPGAPATFLRPSPI------------------PC 304
RVP+PA PR P SA + +L P AP P+PI PC
Sbjct: 2435 RVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPNPITILPVHILPSPPPPSQIPPC 2494
Query: 305 SSPGPWQSLCGLGPPCAGCPWPTAGPGR------RSPGGTSPERSPGTARARGDPTSLQA 358
SSP C P C P T P + SP P P +A P L+
Sbjct: 2495 SSPA-----CTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGPPSVPISASVTNLPLGLRP 2549
Query: 359 SSEKTQQ 365
+E Q
Sbjct: 2550 EAELCAQ 2556
Score = 33.9 bits (76), Expect = 0.24
Identities = 48/159 (30%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 174 APKAGP-PGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGL 232
AP GP P V P +PS T+ P L LP L P NT
Sbjct: 1264 APTPGPTPVSVLPSSTPS--TTPAPTGLSLP-------LAANQVPPTMVNNTGVVKIVVR 1314
Query: 233 QNPCSTATPGPPLGSFPFLP--GGPPV---GAEAWARRVPQPAAPPRRPPQSASSLSASL 287
Q P TP PPL P P G P V R+P P R P +L L
Sbjct: 1315 QAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPL 1374
Query: 288 --------------RPPGAPATFLRPSPIPCSSPGPWQS 312
P AP T P +P S PGP S
Sbjct: 1375 LKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASS 1413
Score = 32.0 bits (71), Expect = 0.90
Identities = 32/116 (27%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 235 PCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPA 294
P S P G P +P P G P + P+ P LS + RPP P
Sbjct: 1046 PASLMVSASPAGP-PLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPP-TPT 1103
Query: 295 TFLRPSPIPCS---SPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTA 347
L+P+P P SP P L P P T P + T+ + TA
Sbjct: 1104 LSLKPTP-PAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTA 1158
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 59.7 bits (143), Expect = 4e-09
Identities = 80/256 (31%), Positives = 94/256 (36%), Gaps = 36/256 (14%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL G EP E E PGE+ + G GG P LP P P P G PPG
Sbjct: 334 GLLGDRGEPGEDGE-PGEQGPQ--GLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGV- 389
Query: 154 PSGLGEALPAQSRPSPFRP---AAPKA-GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
P G+ P+ P P P A GPPG P P T + P G++
Sbjct: 390 PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPG-FTGRPGGPGVAGALGQKG 448
Query: 210 D--LPG--GLAGPRGGLNTSRSLYSGLQNPCSTATPG--PPLGSFPFLPGGPPVGAEAWA 263
D LPG GL GP G GLQ P P P L P LP GPP A
Sbjct: 449 DLGLPGQPGLRGPSG--------IPGLQGPAGPIGPQGLPGLKGEPGLP-GPPGEGRAGE 499
Query: 264 RRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQ--SLCGLGPPCA 321
P PP P + ++ PPG P P +PG + + GL P
Sbjct: 500 PGTAGPTGPPGVP--GSPGITGPPGPPGPPG--------PPGAPGAFDETGIAGLHLPNG 549
Query: 322 GCPWPTAGPGRRSPGG 337
G G G + G
Sbjct: 550 GVEGAVLGKGGKPQFG 565
Score = 57.4 bits (137), Expect = 2e-08
Identities = 72/241 (29%), Positives = 79/241 (32%), Gaps = 43/241 (17%)
Query: 116 LAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP 175
L GE G P P PR P P P PG GL P + P F
Sbjct: 75 LKGEPGPPGKPGPRGPPGPPGFPG---------KPGMGKPGL-HGQPGPAGPPGFSRMG- 123
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP 235
KAGPPGL + P + P G R D GL GP G GL P
Sbjct: 124 KAGPPGLPGKVGPPGQPGLRGEP-------GIRGD--QGLRGPPGP--------PGLPGP 166
Query: 236 CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAP-A 294
PG P +PG P E P P P P + PG P A
Sbjct: 167 SGITIPGKP--GAQGVPGPPGFQGE------PGPQGEPGPPGDRGLKGDNGVGQPGLPGA 218
Query: 295 TFLRPSPIPCSSPGPWQSLCGLGPP-CAGCPWPTAGPGRRSPGGT-SPERSPGTARARGD 352
+P P PGP GLG P G P G P G P PG +G
Sbjct: 219 PGQGGAPGPPGLPGP----AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGP 274
Query: 353 P 353
P
Sbjct: 275 P 275
Score = 55.8 bits (133), Expect = 6e-08
Identities = 85/300 (28%), Positives = 95/300 (31%), Gaps = 65/300 (21%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL P L D P PG+K GE G P +P PR P A G PPG D
Sbjct: 235 GLGKPGL--DGLPGAPGDK-----GESGPPGVPGPRGEPGA---------VGPKGPPGVD 278
Query: 154 PSGLGEA--LPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL 211
G+ A LP PS + GPPGL+ P T P L P R
Sbjct: 279 GVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGP-------TGYGMPGLPGPKGDRGPAG 331
Query: 212 PGGLAGPRG--------GLNTSRSLYSGLQNPCSTATPG---PPLGSFPFLPGGPPV--- 257
GL G RG G + L P S PG PP PGGPP
Sbjct: 332 VPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPG 391
Query: 258 --GAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPI------------- 302
G + + +P P R A P G P RP
Sbjct: 392 IRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLG 451
Query: 303 ---------PCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
P PG +GP G P PG P G PGTA G P
Sbjct: 452 LPGQPGLRGPSGIPGLQGPAGPIGPQ--GLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPP 509
Score = 49.7 bits (117), Expect = 4e-06
Identities = 75/260 (28%), Positives = 87/260 (33%), Gaps = 71/260 (27%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
G GP+ EP P + G K G+ G P P P P +P P L PG D
Sbjct: 188 GEPGPQGEPGP-PGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP----AGLGKPGLD 242
Query: 154 PSGLGEALPAQSRPSPFRPAAP----KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
GL P AP ++GPPG+ P P + K PP + +G
Sbjct: 243 --GL--------------PGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGV----DGVGV 282
Query: 210 DLPGGLAGPRGGLNTSRSLYSGLQNPCSTATP----GPPLGSFPFLPGGPPVGAEAWARR 265
GL GP+G SG + T P GP P LPG P G
Sbjct: 283 PGAAGLPGPQGP--------SGAKGEPGTRGPPGLIGPTGYGMPGLPG--PKGD------ 326
Query: 266 VPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPW 325
R P L PG PG Q GLG P G P
Sbjct: 327 ---------RGPAGVPGLLGDRGEPGEDG-----------EPGE-QGPQGLGGP-PGLPG 364
Query: 326 PTAGPGRRSPGGTSPERSPG 345
PGRR P G E PG
Sbjct: 365 SAGLPGRRGPPGPKGEAGPG 384
Score = 29.3 bits (64), Expect = 5.8
Identities = 52/181 (28%), Positives = 64/181 (35%), Gaps = 26/181 (14%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGD------PALPRPRLYPA--APAMP-SPDVVY 144
G GP+ EP G G+ GD P L P P PA P P +
Sbjct: 421 GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP 480
Query: 145 GALPPPGCD-PSGLGEA-LPAQSRPS--PFRPAAP----KAGPPGLVHPLFSPSHLTSKT 196
G PG P G G A P + P+ P P +P GPPG P +P
Sbjct: 481 GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG 540
Query: 197 PPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPP 256
L+LP G + G P+ GL S P TA + + PF G P
Sbjct: 541 IAGLHLPNGGVEGAVLGKGGKPQFGLGE----LSAHATPAFTA-----VLTSPFPASGMP 591
Query: 257 V 257
V
Sbjct: 592 V 592
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 59.3 bits (142), Expect = 5e-09
Identities = 95/308 (30%), Positives = 107/308 (34%), Gaps = 79/308 (25%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALP----------RPRLYPAAPAMPSPD 141
GL GP+ EP P PG K G GDP LP +P L P P P P
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGIK-----GSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPP 1130
Query: 142 VVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP-------KAGPPGLVHPLFSPSHLTS 194
G PPG +P GE P P +P P + G PG P
Sbjct: 1131 GPKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 195 KTPPPLYLP-TEGRRSD--LPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
P P LP G++ D LPG GL GP+G + G+Q P PGPP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG--EPGFHGFPGVQGP-----PGPPGS 1242
Query: 247 SFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSS 306
P L G P G P P PP RP L PPG P I
Sbjct: 1243 PGPALEG--PKGN-------PGPQGPPGRP--GFQGLPGPEGPPGLPGN----GGIKGEK 1287
Query: 307 PGPWQ----SLCGL----GPP-------------CAGCPWPTAGPGRRSPGGTSPERSPG 345
P Q L GL GPP G P PG PG P PG
Sbjct: 1288 GNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPG--FPGMKGPSGVPG 1345
Query: 346 TARARGDP 353
+A G+P
Sbjct: 1346 SAGPEGEP 1353
Score = 51.6 bits (122), Expect = 1e-06
Identities = 83/297 (27%), Positives = 97/297 (32%), Gaps = 50/297 (16%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA------------PAMPS 139
G+ D EL P PG G+ G P LP P+ P P +P
Sbjct: 555 GMKGDKGELGSPGAPGLPG--LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 140 PDVVYGALPPPGCDPSG-LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
G + PPG P G +GE + A G PG+ P P ++
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGE--------KGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 199 PLYLPTEGRRSD--LPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPP-LGSFPFL 251
P GR D LPG GL G G G+ S+ G PGPP FP +
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK----GEPGIPGIGLPGPPGPKGFPGI 720
Query: 252 PGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPAT-----FLRPS-----P 301
PG P + P PP P A PPG P L P P
Sbjct: 721 PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP 780
Query: 302 IPCSSPGPWQSLCGLGPPCA-----GCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
P PG L GL P G P P PG G P PG G P
Sbjct: 781 GPPGPPGR-TGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQP 836
Score = 51.6 bits (122), Expect = 1e-06
Identities = 81/303 (26%), Positives = 105/303 (34%), Gaps = 65/303 (21%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGD-----------PALPRPRLYPAAPAMPSPDV 142
G++GP P P +PG L G+ GD P LP P+ P P P
Sbjct: 1039 GVEGPP-GPSGVPGQPGSP--GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Query: 143 VYGALPPPGCDPSGLGEALPAQSRPS-PFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLY 201
+ G++ PG GL A+ +P P P P GPPG P ++ PP
Sbjct: 1096 IKGSVGDPGL--PGLPGTPGAKGQPGLPGFPGTP--GPPG-------PKGISG---PPGN 1141
Query: 202 LPTEGRRSDLPG----GLAGPRGGLNTSRSLYSGLQNPC-STATPGPPLGSFPFLPGGPP 256
G + G G GP G + G+ P PG P P PG P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPG--EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 257 VGAEAWARRVP----QPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPI---PCSSPGP 309
+ + +P P P + PPG P + P P P +PGP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGS---PGPALEGPKGNPGP 1256
Query: 310 WQSLCGLGPP----CAGCPWPTAGPGRRSPGGTSPERS-------PGTARARGD--PTSL 356
GPP G P P PG GG E+ PG +GD P L
Sbjct: 1257 ------QGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL 1310
Query: 357 QAS 359
Q +
Sbjct: 1311 QGN 1313
Score = 46.6 bits (109), Expect = 4e-05
Identities = 86/299 (28%), Positives = 96/299 (32%), Gaps = 82/299 (27%)
Query: 94 GLDGPELEP-------DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
G GPE P D+G P PG K G G P LP P P MP D G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPPGPK-----GIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSP-SHLTSKTPPPLYLP 203
PGC+ + P SP P GPPG+ P S + S P P P
Sbjct: 118 PQGIPGCNGTKGERGFPG----SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 204 TEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWA 263
G GP G GL P T PG P+G P GPP
Sbjct: 174 ----------GYPGPPG--------IQGLPGP--TGIPG-PIG-----PPGPP------- 200
Query: 264 RRVPQPAAPPRRP------------PQSASSLSASLRPPGAPATFL-RPSPIPCSSPGPW 310
+ P PP P P+ PPG P + PI
Sbjct: 201 -GLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGD 259
Query: 311 QSLCG-LGPP----CAGCPWPTAG----------PGRR-SPGGTSPERSPGTARARGDP 353
Q L G GPP G P P G PG+R PG PG GDP
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDP 318
Score = 46.6 bits (109), Expect = 4e-05
Identities = 72/261 (27%), Positives = 91/261 (34%), Gaps = 55/261 (21%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQS 165
P +PG+ L+G+ G P P P+ P P P G + PP GL +
Sbjct: 987 PGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQP------GLIGPP-----GLKGTIGDMG 1033
Query: 166 RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG-------GLAGP 218
P P GPPG PS + + P +G + D PG GL GP
Sbjct: 1034 FPGP----QGVEGPPG-------PSGVPGQPGSPGLPGQKGDKGD-PGISSIGLPGLPGP 1081
Query: 219 RGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQ 278
+G Y G NP + G P P LPG P + P PP P+
Sbjct: 1082 KG--EPGLPGYPG--NPGIKGSVGDP--GLPGLPGTPGAKGQPGLPGFPGTPGPP--GPK 1133
Query: 279 SASSLSASLRPPGAPATFLRPSPI----PCSSPGPWQSLCGLGPPCAGCPWPT---AGPG 331
S PPG P P P+ PGP G G P P PG
Sbjct: 1134 GISG------PPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQD--GIPGPAGQKGEPG 1185
Query: 332 RRSPGGTSPERSPGTARARGD 352
+ G P PG + +GD
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGD 1206
Score = 44.3 bits (103), Expect = 2e-04
Identities = 64/233 (27%), Positives = 81/233 (34%), Gaps = 47/233 (20%)
Query: 92 GIGLDGPELEPDEGPEEPGEK--FRRLAGEGGDPALP------RPRLYPAAPAMPSPDVV 143
G L+GP+ P GP+ P + F+ L G G P LP + P P +P +
Sbjct: 1244 GPALEGPKGNP--GPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL 1301
Query: 144 YGALPPPGC--------------DPSGLG-EALPAQSRPSPFRPAAPKAGPPGLVHPLFS 188
G PPG DP G P PS +A G PGL+ P
Sbjct: 1302 KGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPP-G 1360
Query: 189 PSHLTSKTPPPLYLPTEGRRSDLPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGP 243
P L + + + + +PG GL GP+G GL P T PG
Sbjct: 1361 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP--------QGLPGP--TGPPGD 1410
Query: 244 PLGSFPFLPGGPPVGAEAWARRVP-QPAAPPRRPPQSASSLSASLRPPGAPAT 295
P LPG G +P QP P L PPG P T
Sbjct: 1411 P--GRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQG---PPGPPGT 1458
Score = 43.1 bits (100), Expect = 4e-04
Identities = 76/283 (26%), Positives = 88/283 (31%), Gaps = 53/283 (18%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G + EP + P + GE G+ G P LP YP P G PPG
Sbjct: 286 GEKGEQGEPGKRGKPGKDGEN-----GQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 152 CDPSGLGEALPAQSRPSPFRPAAPKA--GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
P GL +P RP K G PGL + PP L P
Sbjct: 341 --PPGL--VIP---RPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 210 DLPG--GLAGPRGGLNTSRSLYSGLQNPCSTATPGPP-LGSFPFLPGGPPVGAEAWARRV 266
PG G G RG G + P + PGPP L P PG P
Sbjct: 394 GPPGPPGFPGERG--------QKGDEGPPGISIPGPPGLDGQPGAPGLPG---------- 435
Query: 267 PQPAAPPRRPPQSASSLSASLRPPGAPA----------------TFLRPSPIPCSSPGPW 310
P A P PP PPG+P T S P
Sbjct: 436 PPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 311 QSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
L GL P +P + G T P+ PG A G P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAP 538
Score = 32.0 bits (71), Expect = 0.90
Identities = 46/162 (28%), Positives = 54/162 (33%), Gaps = 28/162 (17%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL GP P G P + + G+ G P +P P P + G PPG D
Sbjct: 1354 GLIGPPGPP--GLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPG-D 1410
Query: 154 PSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG 213
P G LP F A + G PGL P PP P
Sbjct: 1411 PGRNG--LPG------FDGAGGRKGDPGLPG---QPGTRGLDGPPG------------PD 1447
Query: 214 GLAGPRGGLNTSRSLYSGLQNPCSTATPGP--PLGSFPFLPG 253
GL GP G TS + L S T P P G+ G
Sbjct: 1448 GLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTLQVYEG 1489
Score = 30.8 bits (68), Expect = 2.0
Identities = 37/122 (30%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 243 PPLGSFPFLPGGPPVGAEAWARRVPQPAAPP--RRPPQSASSLSASLRPPGAPATFLRPS 300
P L FP G P + +P P P R PP PG P T P
Sbjct: 59 PGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGL----------PGFPGTPGLPG 108
Query: 301 -PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS-PGGTSPERSPGTARARGDPTSLQA 358
P +PGP Q + P C G PG PG P PG +G+P S+
Sbjct: 109 MPGHDGAPGP-QGI----PGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIM 163
Query: 359 SS 360
SS
Sbjct: 164 SS 165
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 58.9 bits (141), Expect = 7e-09
Identities = 66/239 (27%), Positives = 79/239 (33%), Gaps = 38/239 (15%)
Query: 123 PALPRPRLYPAAPAMP--SPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
P P P AP P SP V A PP PS L P P +P A PP
Sbjct: 439 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 498
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
P + L PPP P L P A
Sbjct: 499 PQAPPPLAAPPLQLAKPPPQAPP---------------------------ALATPPLQAL 531
Query: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
P PP PG P A P PP+ PP A+ L PP PA+ +
Sbjct: 532 PSPPAS----FPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQV--PPSPPASPTLQA 585
Query: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGT--SPERSPGTARARGDPTSLQ 357
P +PGP S+ G A P P P RSP T P+ + ++ A P L+
Sbjct: 586 PRRPPTPGPDTSVSGPRLTLALAPGPPPPPS-RSPSSTLSGPDLAGHSSSATSTPEELR 643
Score = 55.8 bits (133), Expect = 6e-08
Identities = 68/238 (28%), Positives = 88/238 (36%), Gaps = 32/238 (13%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
A P P P+ +PSP A PP S L A P P +P A PP
Sbjct: 341 APPSPSAPPSLQTLPSPP----ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA 396
Query: 184 HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGP 243
P + PPL P S LA P + +++ LQ P S P P
Sbjct: 397 PPALA--------LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHL-LQAPFS-PPPSP 446
Query: 244 PLGSFPFLPGGPPVGAEAW--ARRVPQPAAPPRR----PPQSASSLSASLRPPGAPATFL 297
P+ + P PPV A ++ P AAPP + PP S ++ PP AP
Sbjct: 447 PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA 506
Query: 298 RPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAG-PGR----------RSPGGTSPERSP 344
P P+ + P P PP P P A PG+ SP T P ++P
Sbjct: 507 AP-PLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAP 563
Score = 55.5 bits (132), Expect = 8e-08
Identities = 76/252 (30%), Positives = 91/252 (36%), Gaps = 49/252 (19%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
+L P L +PSP + A PPP +A PA + P P +P A PP +
Sbjct: 368 SLGSPTLQATHSFLPSPPLSPLATPPP--------QAPPALALPPLQAPPSPPASPP--L 417
Query: 184 HPLFSPSH----------LTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQ 233
PL +PS L + PP P + S P S S Q
Sbjct: 418 SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFS--------PPASPPVSPSATPPSQ 469
Query: 234 NPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAP 293
P S A PPL P P PP+ A P P AP PP +A L + PP AP
Sbjct: 470 APPSLA--APPLQVPPSPPASPPMSPSA----TPPPQAP---PPLAAPPLQLAKPPPQAP 520
Query: 294 ATFLR------PSPIPCSSPG--PWQSLCGLGPPCAGCPWPTAGPGRRSP---GGTSPER 342
PSP P S PG P+ L P P A P +P SP
Sbjct: 521 PALATPPLQALPSP-PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 579
Query: 343 SPGTARARGDPT 354
SP R PT
Sbjct: 580 SPTLQAPRRPPT 591
Score = 44.3 bits (103), Expect = 2e-04
Identities = 63/203 (31%), Positives = 77/203 (37%), Gaps = 25/203 (12%)
Query: 166 RPSPF-RPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNT 224
RP+P RP P GP V S + S T P P RR GGL P
Sbjct: 191 RPAPSARPRPPTEGPRKSV----SSASEHSTTEPS---PAARRRPSAGGGLQRP-----A 238
Query: 225 SRSLYSGLQNPCSTATPGPPLGSFPFLPGGP--PVGAEAWARRVPQPAAPPRRPPQSASS 282
SRSL S S A GP P P P P A R PQ P + +
Sbjct: 239 SRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGP 298
Query: 283 LSASLRPPGAPATFLRPSPIPCSSPGPWQS--LCGLGPPC-AGCPWPTAGPGRR---SPG 336
LS+S +P+ L+ P P S C L P P P+A P + SP
Sbjct: 299 LSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPP 358
Query: 337 GTSPERSPGTARARGDPTSLQAS 359
T P ++ + G PT LQA+
Sbjct: 359 ATPPSQA---TTSLGSPT-LQAT 377
Score = 43.5 bits (101), Expect = 3e-04
Identities = 75/272 (27%), Positives = 93/272 (34%), Gaps = 52/272 (19%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDP-----SGLGEALPAQSRP--SPFRPAA- 174
P PRP P P+ V GA G P G+G A +S P P R A
Sbjct: 30 PGSPRP----PPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGT 85
Query: 175 ----PKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSR---- 226
P + PP +P + +P P+ P + PG L + GL S
Sbjct: 86 SSRNPASRPPASGRGERAPP-AKNTSPGPVSSPGRASGTTRPGPLG--QKGLRISAEETV 142
Query: 227 ------------SLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPR 274
+L +G + S TPG P S G E R P P+A PR
Sbjct: 143 ARGKATEAPKRSALSAGARRDTSGPTPGTP--SPAMARRSRAAGTEVGLPR-PAPSARPR 199
Query: 275 RPPQ----SASSLS---------ASLRPPGAPATFLRPSPIPCSSPG-PWQSLCGLGPPC 320
P + S SS S A+ R P A RP+ SS P S GP
Sbjct: 200 PPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 259
Query: 321 AGCPWPTAGPGRRSPGGTSPERSPGTARARGD 352
G P A P + P G R P R D
Sbjct: 260 RGTPRAPAHPSQPKPKGLQALRPPQVTPPRKD 291
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 58.9 bits (141), Expect = 7e-09
Identities = 66/239 (27%), Positives = 79/239 (33%), Gaps = 38/239 (15%)
Query: 123 PALPRPRLYPAAPAMP--SPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
P P P AP P SP V A PP PS L P P +P A PP
Sbjct: 400 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 459
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
P + L PPP P L P A
Sbjct: 460 PQAPPPLAAPPLQLAKPPPQAPP---------------------------ALATPPLQAL 492
Query: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
P PP PG P A P PP+ PP A+ L PP PA+ +
Sbjct: 493 PSPPAS----FPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQV--PPSPPASPTLQA 546
Query: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGT--SPERSPGTARARGDPTSLQ 357
P +PGP S+ G A P P P RSP T P+ + ++ A P L+
Sbjct: 547 PRRPPTPGPDTSVSGPRLTLALAPGPPPPPS-RSPSSTLSGPDLAGHSSSATSTPEELR 604
Score = 55.8 bits (133), Expect = 6e-08
Identities = 68/238 (28%), Positives = 88/238 (36%), Gaps = 32/238 (13%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
A P P P+ +PSP A PP S L A P P +P A PP
Sbjct: 302 APPSPSAPPSLQTLPSPP----ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA 357
Query: 184 HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGP 243
P + PPL P S LA P + +++ LQ P S P P
Sbjct: 358 PPALA--------LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHL-LQAPFS-PPPSP 407
Query: 244 PLGSFPFLPGGPPVGAEAW--ARRVPQPAAPPRR----PPQSASSLSASLRPPGAPATFL 297
P+ + P PPV A ++ P AAPP + PP S ++ PP AP
Sbjct: 408 PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA 467
Query: 298 RPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAG-PGR----------RSPGGTSPERSP 344
P P+ + P P PP P P A PG+ SP T P ++P
Sbjct: 468 AP-PLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAP 524
Score = 55.5 bits (132), Expect = 8e-08
Identities = 76/252 (30%), Positives = 91/252 (36%), Gaps = 49/252 (19%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
+L P L +PSP + A PPP +A PA + P P +P A PP +
Sbjct: 329 SLGSPTLQATHSFLPSPPLSPLATPPP--------QAPPALALPPLQAPPSPPASPP--L 378
Query: 184 HPLFSPSH----------LTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQ 233
PL +PS L + PP P + S P S S Q
Sbjct: 379 SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFS--------PPASPPVSPSATPPSQ 430
Query: 234 NPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAP 293
P S A PPL P P PP+ A P P AP PP +A L + PP AP
Sbjct: 431 APPSLA--APPLQVPPSPPASPPMSPSA----TPPPQAP---PPLAAPPLQLAKPPPQAP 481
Query: 294 ATFLR------PSPIPCSSPG--PWQSLCGLGPPCAGCPWPTAGPGRRSP---GGTSPER 342
PSP P S PG P+ L P P A P +P SP
Sbjct: 482 PALATPPLQALPSP-PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 540
Query: 343 SPGTARARGDPT 354
SP R PT
Sbjct: 541 SPTLQAPRRPPT 552
Score = 47.0 bits (110), Expect = 3e-05
Identities = 77/267 (28%), Positives = 93/267 (34%), Gaps = 51/267 (19%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDP-----SGLGEALPAQSRP--SPFRPAAP 175
P PRP P P+ V GA G P G+G A +S P P R + P
Sbjct: 30 PGSPRP----PPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRP 85
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSR--------- 226
A G P P+ TS P P+ P + PG L + GL S
Sbjct: 86 PASGRGERAP---PAKNTS--PGPVSSPGRASGTTRPGPLG--QKGLRISAEETVARGKA 138
Query: 227 -------SLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQ- 278
+L +G + S TPG P S G E R P P+A PR P +
Sbjct: 139 TEAPKRSALSAGARRDTSGPTPGTP--SPAMARRSRAAGTEVGLPR-PAPSARPRPPTEG 195
Query: 279 ---SASSLS---------ASLRPPGAPATFLRPSPIPCSSPG-PWQSLCGLGPPCAGCPW 325
S SS S A+ R P A RP+ SS P S GP G P
Sbjct: 196 PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPR 255
Query: 326 PTAGPGRRSPGGTSPERSPGTARARGD 352
A P + P G R P R D
Sbjct: 256 APAHPSQPKPKGLQALRPPQVTPPRKD 282
Score = 42.0 bits (97), Expect = 9e-04
Identities = 59/194 (30%), Positives = 71/194 (36%), Gaps = 32/194 (16%)
Query: 166 RPSPF-RPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNT 224
RP+P RP P GP V S + S T P P RR GGL P
Sbjct: 182 RPAPSARPRPPTEGPRKSV----SSASEHSTTEPS---PAARRRPSAGGGLQRP-----A 229
Query: 225 SRSLYSGLQNPCSTATPGPPLGSFPFLPGGP----PVGAEAWARRVPQPAAPPRRPPQSA 280
SRSL S S A GP P P P P G +A R PQ P + +
Sbjct: 230 SRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQAL--RPPQVTPPRKDAAPAL 287
Query: 281 SSLSASLRPPGAPATFLRPS----------PIPCSSPGPWQSLCGLGPPCAGCPWPTAGP 330
LS+S P P+ PS P P ++P P Q+ LG P
Sbjct: 288 GPLSSS--PLATPSPSAPPSPSAPPSLQTLPSPPATP-PSQATTSLGSPTLQATHSFLPS 344
Query: 331 GRRSPGGTSPERSP 344
SP T P ++P
Sbjct: 345 PPLSPLATPPPQAP 358
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 58.9 bits (141), Expect = 7e-09
Identities = 95/308 (30%), Positives = 107/308 (34%), Gaps = 82/308 (26%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALP----------RPRLYPAAPAMPSPD 141
GL GP+ EP P PG K G GDP LP +P L P P P P
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGIK-----GSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPP 1130
Query: 142 VVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP-------KAGPPGLVHPLFSPSHLTS 194
G PPG +P GE P P +P P + G PG P
Sbjct: 1131 GPKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 195 KTPPPLYLP-TEGRRSD--LPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
P P LP G++ D LPG GL GP+G + G+Q P PGPP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG--EPGFHGFPGVQGP-----PGPPGS 1242
Query: 247 SFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSS 306
P L G P G P P PP RP L PPG P I
Sbjct: 1243 PGPALEG--PKGN-------PGPQGPPGRP-----GLPGPEGPPGLPGN----GGIKGEK 1284
Query: 307 PGPWQ----SLCGL----GPP-------------CAGCPWPTAGPGRRSPGGTSPERSPG 345
P Q L GL GPP G P PG PG P PG
Sbjct: 1285 GNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPG--FPGMKGPSGVPG 1342
Query: 346 TARARGDP 353
+A G+P
Sbjct: 1343 SAGPEGEP 1350
Score = 52.4 bits (124), Expect = 6e-07
Identities = 81/300 (27%), Positives = 105/300 (35%), Gaps = 62/300 (20%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGD-----------PALPRPRLYPAAPAMPSPDV 142
G++GP P P +PG L G+ GD P LP P+ P P P
Sbjct: 1039 GVEGPP-GPSGVPGQPGSP--GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Query: 143 VYGALPPPGCDPSGLGEALPAQSRPS-PFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLY 201
+ G++ PG GL A+ +P P P P GPPG P ++ PP
Sbjct: 1096 IKGSVGDPGL--PGLPGTPGAKGQPGLPGFPGTP--GPPG-------PKGISG---PPGN 1141
Query: 202 LPTEGRRSDLPG----GLAGPRGGLNTSRSLYSGLQNPC-STATPGPPLGSFPFLPGGPP 256
G + G G GP G + G+ P PG P P PG P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPG--EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 257 VGAEAWARRVP----QPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPI---PCSSPGP 309
+ + +P P P + PPG P + P P P +PGP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGS---PGPALEGPKGNPGP 1256
Query: 310 WQSLCGLGPP-CAGCPWPTAGPGRRSPGGTSPERS-------PGTARARGD--PTSLQAS 359
GPP G P P PG GG E+ PG +GD P LQ +
Sbjct: 1257 ------QGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGN 1310
Score = 51.6 bits (122), Expect = 1e-06
Identities = 83/297 (27%), Positives = 97/297 (32%), Gaps = 50/297 (16%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA------------PAMPS 139
G+ D EL P PG G+ G P LP P+ P P +P
Sbjct: 555 GMKGDKGELGSPGAPGLPG--LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 140 PDVVYGALPPPGCDPSG-LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
G + PPG P G +GE + A G PG+ P P ++
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGE--------KGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 199 PLYLPTEGRRSD--LPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPP-LGSFPFL 251
P GR D LPG GL G G G+ S+ G PGPP FP +
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK----GEPGIPGIGLPGPPGPKGFPGI 720
Query: 252 PGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPAT-----FLRPS-----P 301
PG P + P PP P A PPG P L P P
Sbjct: 721 PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP 780
Query: 302 IPCSSPGPWQSLCGLGPPCA-----GCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
P PG L GL P G P P PG G P PG G P
Sbjct: 781 GPPGPPGR-TGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQP 836
Score = 46.6 bits (109), Expect = 4e-05
Identities = 86/299 (28%), Positives = 96/299 (32%), Gaps = 82/299 (27%)
Query: 94 GLDGPELEP-------DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
G GPE P D+G P PG K G G P LP P P MP D G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPPGPK-----GIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSP-SHLTSKTPPPLYLP 203
PGC+ + P SP P GPPG+ P S + S P P P
Sbjct: 118 PQGIPGCNGTKGERGFPG----SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 204 TEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWA 263
G GP G GL P T PG P+G P GPP
Sbjct: 174 ----------GYPGPPG--------IQGLPGP--TGIPG-PIG-----PPGPP------- 200
Query: 264 RRVPQPAAPPRRP------------PQSASSLSASLRPPGAPATFL-RPSPIPCSSPGPW 310
+ P PP P P+ PPG P + PI
Sbjct: 201 -GLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGD 259
Query: 311 QSLCG-LGPP----CAGCPWPTAG----------PGRR-SPGGTSPERSPGTARARGDP 353
Q L G GPP G P P G PG+R PG PG GDP
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDP 318
Score = 46.6 bits (109), Expect = 4e-05
Identities = 72/261 (27%), Positives = 91/261 (34%), Gaps = 55/261 (21%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQS 165
P +PG+ L+G+ G P P P+ P P P G + PP GL +
Sbjct: 987 PGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQP------GLIGPP-----GLKGTIGDMG 1033
Query: 166 RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG-------GLAGP 218
P P GPPG PS + + P +G + D PG GL GP
Sbjct: 1034 FPGP----QGVEGPPG-------PSGVPGQPGSPGLPGQKGDKGD-PGISSIGLPGLPGP 1081
Query: 219 RGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQ 278
+G Y G NP + G P P LPG P + P PP P+
Sbjct: 1082 KG--EPGLPGYPG--NPGIKGSVGDP--GLPGLPGTPGAKGQPGLPGFPGTPGPP--GPK 1133
Query: 279 SASSLSASLRPPGAPATFLRPSPI----PCSSPGPWQSLCGLGPPCAGCPWPT---AGPG 331
S PPG P P P+ PGP G G P P PG
Sbjct: 1134 GISG------PPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQD--GIPGPAGQKGEPG 1185
Query: 332 RRSPGGTSPERSPGTARARGD 352
+ G P PG + +GD
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGD 1206
Score = 43.1 bits (100), Expect = 4e-04
Identities = 76/283 (26%), Positives = 88/283 (31%), Gaps = 53/283 (18%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G + EP + P + GE G+ G P LP YP P G PPG
Sbjct: 286 GEKGEQGEPGKRGKPGKDGEN-----GQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 152 CDPSGLGEALPAQSRPSPFRPAAPKA--GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
P GL +P RP K G PGL + PP L P
Sbjct: 341 --PPGL--VIP---RPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 210 DLPG--GLAGPRGGLNTSRSLYSGLQNPCSTATPGPP-LGSFPFLPGGPPVGAEAWARRV 266
PG G G RG G + P + PGPP L P PG P
Sbjct: 394 GPPGPPGFPGERG--------QKGDEGPPGISIPGPPGLDGQPGAPGLPG---------- 435
Query: 267 PQPAAPPRRPPQSASSLSASLRPPGAPA----------------TFLRPSPIPCSSPGPW 310
P A P PP PPG+P T S P
Sbjct: 436 PPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 311 QSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDP 353
L GL P +P + G T P+ PG A G P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAP 538
Score = 32.0 bits (71), Expect = 0.90
Identities = 46/162 (28%), Positives = 54/162 (33%), Gaps = 28/162 (17%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL GP P G P + + G+ G P +P P P + G PPG D
Sbjct: 1351 GLIGPPGPP--GLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPG-D 1407
Query: 154 PSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG 213
P G LP F A + G PGL P PP P
Sbjct: 1408 PGRNG--LPG------FDGAGGRKGDPGLPG---QPGTRGLDGPPG------------PD 1444
Query: 214 GLAGPRGGLNTSRSLYSGLQNPCSTATPGP--PLGSFPFLPG 253
GL GP G TS + L S T P P G+ G
Sbjct: 1445 GLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTLQVYEG 1486
Score = 30.8 bits (68), Expect = 2.0
Identities = 37/122 (30%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 243 PPLGSFPFLPGGPPVGAEAWARRVPQPAAPP--RRPPQSASSLSASLRPPGAPATFLRPS 300
P L FP G P + +P P P R PP PG P T P
Sbjct: 59 PGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGL----------PGFPGTPGLPG 108
Query: 301 -PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRS-PGGTSPERSPGTARARGDPTSLQA 358
P +PGP Q + P C G PG PG P PG +G+P S+
Sbjct: 109 MPGHDGAPGP-QGI----PGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIM 163
Query: 359 SS 360
SS
Sbjct: 164 SS 165
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 58.5 bits (140), Expect = 9e-09
Identities = 79/270 (29%), Positives = 98/270 (36%), Gaps = 51/270 (18%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPP------GCDPSGLGEALPAQSRPSPF-RPA-APK 176
+P P++ P P P V GAL PP G P G G +P P PF RP P
Sbjct: 677 VPPPQVPPHQPGPP----VVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPM 732
Query: 177 AGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRS--LYSGLQN 234
PPG + P P TPP P +P ++G RG + S +Y
Sbjct: 733 HLPPGFLPPGPPP----PITPPVSIPPPHTPPISIPNLVSGARGNAESGDSVKMYGSAVP 788
Query: 235 PCS-TATPGPP-------LGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSAS 286
P + T P PP LG+ P GP +G +A P RP L
Sbjct: 789 PAAPTNLPTPPVTQPVSLLGTQGVAP-GPVIGLQA-----PSTGLLGARP-----GLIPL 837
Query: 287 LRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAG-----------CPWPTAGPGRRSP 335
RPPG P L+ P+ P P + PP G P+P GP R P
Sbjct: 838 QRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVR-P 896
Query: 336 GGTSPERSPGTARARGDPTSLQASSEKTQQ 365
GG PG G P + QQ
Sbjct: 897 GGMPGLGGPGP--GPGGPEDRDGRQQPPQQ 924
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 58.5 bits (140), Expect = 9e-09
Identities = 82/291 (28%), Positives = 103/291 (35%), Gaps = 28/291 (9%)
Query: 83 DILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDV 142
++L + +GL GP P P +PG+ + GE G P LP P AP P
Sbjct: 18 ELLAAAGAQRVGLPGPPGPPGP-PGKPGQD--GIDGEAGPPGLPGPPGPKGAPGKPGKPG 74
Query: 143 VYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL-VHPLFSPSHLTSKTPPPLY 201
G PG D + P R + GPPGL L P + PP
Sbjct: 75 EAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGG 134
Query: 202 LPTEG--RRSDLPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPG- 253
+ G S LPG G GP G + LQ P S PGPP P +PG
Sbjct: 135 IGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCP-SICPPGPP--GPPGMPGF 191
Query: 254 GPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSL 313
P G + V + P + L S+ G LR P P PG +
Sbjct: 192 KGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRG--LRGLPGPLGPPGDRGPI 249
Query: 314 CGLGPP-CAGCPWPTAGPGRRSP----------GGTSPERSPGTARARGDP 353
GPP G P G R P G P+ +PG A G+P
Sbjct: 250 GFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP 300
Score = 57.4 bits (137), Expect = 2e-08
Identities = 85/281 (30%), Positives = 104/281 (37%), Gaps = 55/281 (19%)
Query: 93 IGLDGPELEP----DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGAL 147
+G GP EP D G P E GE AG G P+ P AP + G++
Sbjct: 357 LGEAGPSGEPGVPGDAGMPGERGE-----AGHRGSAGALGPQGPPGAPGVRGFQGQKGSM 411
Query: 148 PPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGR 207
PG LP P R GP G P S P G
Sbjct: 412 GDPG---------LPG---PQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLP-------GD 452
Query: 208 RSDL-PGGLAGPRGGLNTSRSLY-SGLQNPCSTA----TPGPP----LGSFPFLPG--GP 255
+ +L P GL GP+G + L G Q P T+ PGPP L P +PG G
Sbjct: 453 KGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGK 512
Query: 256 P--VGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPI-PCSSPGPWQS 312
P G EA +R+ + + + L+A LR P AP + RP P P PGP
Sbjct: 513 PGVPGKEASEQRIRELCGG--MISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGP--- 567
Query: 313 LCGLGPPCAGCPWPTAGPGRRSPGGTSPERSP-GTARARGD 352
P G P PG R P G + P G RGD
Sbjct: 568 -----PGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGD 603
Score = 39.3 bits (90), Expect = 0.006
Identities = 84/300 (28%), Positives = 97/300 (32%), Gaps = 52/300 (17%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPS--PDVVYGALPP 149
G GL GP E G R G G P LP P P P P P+ P
Sbjct: 116 GKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCP 175
Query: 150 PGCDPSGLG-EALPAQSRPSPFR--------------PAAP-KAGPPGLVHPLFSPSHLT 193
C P G +P P+ ++ P P AG PG V L P L
Sbjct: 176 SICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSV-GLQGPRGLR 234
Query: 194 SKTPPPLYLPTE----GRRS--DLPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPG- 242
P PL P + G R +PG G AG RG G R L P TPG
Sbjct: 235 G-LPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGV 293
Query: 243 -PPLGSFPFLPG-----GPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATF 296
P G P +PG G P G + + AP + P L G
Sbjct: 294 AGPSGE-PGMPGKDGQNGVP-GLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGER 351
Query: 297 LRPSPI----PCSSPGPWQSLCGLGPPCAGCPWPTAGPGRR-SPGGTSPERSPGTARARG 351
R + P PG P AG P G R S G P+ PG RG
Sbjct: 352 GRAGELGEAGPSGEPGV--------PGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRG 403
Score = 32.3 bits (72), Expect = 0.69
Identities = 48/176 (27%), Positives = 60/176 (34%), Gaps = 27/176 (15%)
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPS---------GLGEALPAQSRP 167
+G G P P P P +P + G PG + S G+ AQ
Sbjct: 486 SGVQGVPGPPGPLGLQGVPGVPG---ITGKPGVPGKEASEQRIRELCGGMISEQIAQLAA 542
Query: 168 SPFRPAAP-------KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRG 220
+P AP AGPPG P S H ++ PP PT P G G RG
Sbjct: 543 HLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRG 602
Query: 221 GLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRP 276
+ +GL P P P G +PG G + A P P P P
Sbjct: 603 DKGAAG---AGLDGPEGDQGPQGPQG----VPGTSKDGQDG-APGEPGPPGDPGLP 650
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 58.2 bits (139), Expect = 1e-08
Identities = 61/212 (28%), Positives = 74/212 (34%), Gaps = 28/212 (13%)
Query: 123 PALPRPRLYPAAPAMPSPDVVY-GALPPPGCDPSGLGEALPAQSRPSPFRPAA-----PK 176
P+ P P + +P P + G+ PPP P L +P P P P A P
Sbjct: 218 PSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPS 277
Query: 177 AGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS-----DLPGGLAGPRGGLNTSRSLYSG 231
AG PG HP SH PP +P G P GL P G S
Sbjct: 278 AGTPGAGHPGHGHSH--PHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGG-QPP 334
Query: 232 LQNPCSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQP-----AAPPRRPPQSASSLSAS 286
+ P PGPP P P GPP G+ P P PP PP +
Sbjct: 335 PRPPPGMPHPGPPPMGMP--PRGPPFGS-PMGHPGPMPPHGMRGPPPLMPPHGYTG---- 387
Query: 287 LRPPGAPATFLRPSPIPCSSPGPWQSLCGLGP 318
PP P + P+P P P + GP
Sbjct: 388 --PPRPPPYGYQRGPLPPPRPTPRPPVPPRGP 417
Score = 57.4 bits (137), Expect = 2e-08
Identities = 65/210 (30%), Positives = 74/210 (35%), Gaps = 56/210 (26%)
Query: 135 PAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAA-----PKAGPPGLVHPLFSP 189
P MP P +PPPG P G+ A+P P P P A P AG PG HP
Sbjct: 235 PGMPPPGSFPPPVPPPGALPPGIPPAMP----PPPMPPGAAGHGPPSAGTPGAGHPGHGH 290
Query: 190 SHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATP--GPPLGS 247
SH P P PGG+ P G++ + + G P P GPP GS
Sbjct: 291 SH-----PHPFP----------PGGM--PHPGMSQMQLAHHG---PHGLGHPHAGPP-GS 329
Query: 248 FPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSP 307
P PP G +P P PP PP P P P P
Sbjct: 330 GGQPPPRPPPG-------MPHPGPPPMG------------MPPRGP-----PFGSPMGHP 365
Query: 308 GPWQSLCGLGPPCAGCPWPTAGPGRRSPGG 337
GP GPP P GP R P G
Sbjct: 366 GPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 272 PPRRPPQSASSLSASLRPPGAPATFLRPSPI-----------PCSSPGPW-QSLCGLGPP 319
PP P SSL + L PPG P P P+ P P P G GPP
Sbjct: 217 PPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPP 276
Query: 320 CAGCPWPTAGPGRRSPGGTSPERSP 344
AG P G G G + P P
Sbjct: 277 SAGTP----GAGHPGHGHSHPHPFP 297
Score = 36.2 bits (82), Expect = 0.047
Identities = 35/114 (30%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 105 GPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQ 164
GP G G GG P PRP P MP P +PP G P G P
Sbjct: 315 GPHGLGHPHAGPPGSGGQPP-PRP-----PPGMPHPGPPPMGMPPRG-PPFGSPMGHPGP 367
Query: 165 SRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGP 218
P R P P G P P + + P P PT G L GP
Sbjct: 368 MPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGP 421
Score = 29.3 bits (64), Expect = 5.8
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 293 PATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSP 344
P +P P S+P P S G G P G P P + P P G P P
Sbjct: 207 PHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIP 258
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 57.8 bits (138), Expect = 2e-08
Identities = 78/264 (29%), Positives = 97/264 (36%), Gaps = 35/264 (13%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
ALPR R A+P S +G P PG P G + P+ RP P+ GPP
Sbjct: 417 ALPRQRQRDASPGRGS----HGQTPSPGALPLGRQTSQQPAGPPAQQRPP-PQGGPP--- 468
Query: 184 HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSR--SLYSGLQNPCSTATP 241
P + PPL + GL P G R S S Q P S A P
Sbjct: 469 ----QPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
Query: 242 ---GPPLGSFPFL--PGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATF 296
G S P PG PP + + A PP+ Q++ S A + GAP
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 297 LRPSPIPCSSPGP-----WQSLCG----LGPPCAGCPWPTA-GPGRRSPGGTSPERS--- 343
+ P PGP S G GPP P P+ GP R + + S
Sbjct: 585 QQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDV 644
Query: 344 --PGTARARGDP-TSLQASSEKTQ 364
P TA A G P L+AS + Q
Sbjct: 645 PPPATAAAGGPPHPQLKASPAQAQ 668
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 57.8 bits (138), Expect = 2e-08
Identities = 67/218 (30%), Positives = 84/218 (38%), Gaps = 43/218 (19%)
Query: 133 AAPAMPSPDVVYGALPPPGCDPSGLGEAL----PAQSRPSPFRPAAPKAGPPGLVHPLFS 188
+A A PSP V G++ P +G A P S+PSP P AP GP G P S
Sbjct: 94 SAAAAPSP--VMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHG--QPFMS 149
Query: 189 PSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSF 248
P P L +P++ P GL S+ L G P A P +G
Sbjct: 150 P-RFPGGPRPTLRMPSQ------------PPAGLPGSQPLLPGAMEPSPRAQGHPSMGG- 195
Query: 249 PFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPG 308
P PP G A PQ RPP + SL PG PA + P G
Sbjct: 196 PMQRVTPPRG---MASVGPQSYGGGMRPPPN------SLAGPGLPAMNMGP-----GVRG 241
Query: 309 PWQSLCGLGPPCAGCPWPTAGPGRRS--PGGTSPERSP 344
PW S P P+ ++ PG + PGG P +P
Sbjct: 242 PWAS-----PSGNSIPYSSSSPGSYTGPPGGGGPPGTP 274
Score = 36.6 bits (83), Expect = 0.036
Identities = 62/251 (24%), Positives = 80/251 (31%), Gaps = 74/251 (29%)
Query: 127 RPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG-------P 179
+P + P P P P + + PP G G LP PSP P G P
Sbjct: 145 QPFMSPRFPGGPRPTLRMPSQPPAGLP--GSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP 202
Query: 180 PGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTA 239
P + + S+ PPP L G LP GP G+ + SG P S++
Sbjct: 203 PRGMASVGPQSYGGGMRPPPNSLAGPG----LPAMNMGP--GVRGPWASPSGNSIPYSSS 256
Query: 240 TPG----PPLGSFPFLPGGP--------------------PVGAEAWARRVPQPAAP--- 272
+PG PP G P PG P P+G A P P
Sbjct: 257 SPGSYTGPPGGGGP--PGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGP 314
Query: 273 ------------------------PRRPPQSASSLSASLRPP------GAPATFLRPSPI 302
P+ P + + LS + P A TFL P P
Sbjct: 315 MAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPS 374
Query: 303 PCSSPGPWQSL 313
SPG S+
Sbjct: 375 ESYSPGMTMSV 385
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,891,841
Number of Sequences: 37866
Number of extensions: 1767945
Number of successful extensions: 15778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 1669
Number of HSP's that attempted gapping in prelim test: 8484
Number of HSP's gapped (non-prelim): 5833
length of query: 365
length of database: 18,247,518
effective HSP length: 104
effective length of query: 261
effective length of database: 14,309,454
effective search space: 3734767494
effective search space used: 3734767494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.