Search of human proteins with 5031945

Search of human proteins with 5031945

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5031945 nescient helix loop helix 2 [Homo sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|161484632 nescient helix loop helix 2 [Homo sapiens]               268   8e-73
gi|5031945 nescient helix loop helix 2 [Homo sapiens]                 268   8e-73
gi|5031943 nescient helix loop helix 1 [Homo sapiens]                 145   1e-35
gi|116805332 musculin [Homo sapiens]                                   63   6e-11
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]          63   8e-11
gi|148922889 scleraxis homolog B [Homo sapiens]                        62   1e-10
gi|186972126 scleraxis homolog A [Homo sapiens]                        62   1e-10
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]          62   1e-10
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi...    61   2e-10
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo...    59   2e-09
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo...    58   2e-09
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo...    58   2e-09
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    58   3e-09
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    58   3e-09
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H...    57   6e-09
gi|23097242 nephew of atonal 3 [Homo sapiens]                          56   8e-09
gi|4507741 twist [Homo sapiens]                                        55   2e-08
gi|38202237 transcription factor 21 [Homo sapiens]                     55   2e-08
gi|38202239 transcription factor 21 [Homo sapiens]                     55   2e-08
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo...    54   4e-08
gi|17981708 twist homolog 2 [Homo sapiens]                             54   5e-08
gi|153792190 neurogenic differentiation 4 [Homo sapiens]               52   1e-07
gi|4885075 atonal homolog 1 [Homo sapiens]                             52   1e-07
gi|21553337 atonal homolog 7 [Homo sapiens]                            51   2e-07
gi|75677394 transcription factor 23 [Homo sapiens]                     51   2e-07
gi|38455396 neurogenin 1 [Homo sapiens]                                50   7e-07
gi|121114306 neurogenic differentiation 1 [Homo sapiens]               50   7e-07
gi|27475985 neurogenic differentiation 6 [Homo sapiens]                48   2e-06
gi|68989258 neurogenin 3 [Homo sapiens]                                48   3e-06
gi|4504573 inhibitor of DNA binding 4, dominant negative helix-l...    47   4e-06

>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score =  268 bits (686), Expect = 8e-73
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60
           MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
Sbjct: 1   MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60

Query: 61  QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
           QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR
Sbjct: 61  QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120

Query: 121 LAICYISYLNHVLDV 135
           LAICYISYLNHVLDV
Sbjct: 121 LAICYISYLNHVLDV 135


>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score =  268 bits (686), Expect = 8e-73
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60
           MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
Sbjct: 1   MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60

Query: 61  QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
           QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR
Sbjct: 61  QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120

Query: 121 LAICYISYLNHVLDV 135
           LAICYISYLNHVLDV
Sbjct: 121 LAICYISYLNHVLDV 135


>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
          Length = 133

 Score =  145 bits (366), Expect = 1e-35
 Identities = 78/101 (77%), Positives = 81/101 (80%), Gaps = 8/101 (7%)

Query: 43  EAEGDGKGGSRAALYPHP--------QQLSREEKRRRRRATAKYRSAHATRERIRVEAFN 94
           +  G G  G   A  P P        Q LSREE+RRRRRATAKYR+AHATRERIRVEAFN
Sbjct: 33  DGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFN 92

Query: 95  LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 135
           LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV
Sbjct: 93  LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 133


>gi|116805332 musculin [Homo sapiens]
          Length = 206

 Score = 63.2 bits (152), Expect = 6e-11
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 15/133 (11%)

Query: 8   AADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEE-----AEGDGKGGSRAA--LYPHP 60
           A+ SD+ S+   DP+  G  +   LG+    E  +      A G G GGS       P P
Sbjct: 39  ASPSDNSSAEEEDPD--GEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLP 96

Query: 61  QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
            + S  E ++ +R  A        RER R+   + AF+ L+  LP +PPD KLSK++ LR
Sbjct: 97  AKGSAAECKQSQRNAAN------ARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLR 150

Query: 121 LAICYISYLNHVL 133
           LA  YI++L  +L
Sbjct: 151 LASSYIAHLRQLL 163


>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
          Length = 331

 Score = 62.8 bits (151), Expect = 8e-11
 Identities = 33/51 (64%), Positives = 41/51 (80%)

Query: 84  TRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
           +RER R +  N AFAELRKL+PT PPDKKLSK EILRLA+ YI++L  +L+
Sbjct: 194 SRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLN 244


>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 35  VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80
           VS L   E+   D  G        H  +   +  RRR   RRA             + R 
Sbjct: 19  VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78

Query: 81  AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
               RER R  + N AF  LR L+PT P D+KLSKIE LRLA  YIS+L +VL
Sbjct: 79  TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131


>gi|186972126 scleraxis homolog A [Homo sapiens]
          Length = 201

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 35  VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80
           VS L   E+   D  G        H  +   +  RRR   RRA             + R 
Sbjct: 19  VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78

Query: 81  AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
               RER R  + N AF  LR L+PT P D+KLSKIE LRLA  YIS+L +VL
Sbjct: 79  TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131


>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
          Length = 108

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 33/50 (66%), Positives = 39/50 (78%)

Query: 84  TRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           TRER R +  N AFA+LRKL+PT PPDKKLSK E LRLA+ YI++L  VL
Sbjct: 9   TRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL 58


>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
           sapiens]
          Length = 280

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query: 84  TRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           +RER R +  N AFAELRKLLPT PPD+KLSK E+LRLA+ YI +L  +L
Sbjct: 157 SRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLL 206


>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
           sapiens]
          Length = 199

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 77  KYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           + R A   RER R ++ N AF  LR L+PT P D+KLSKIE LRLA  YI++L +VL
Sbjct: 72  RQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 128


>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 72  RRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNH 131
           R  + +  +A+A RER RV+    AF EL++ LP++PPD KLSK+++L LA  YI++L  
Sbjct: 44  RSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR 103

Query: 132 VL 133
            L
Sbjct: 104 SL 105


>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 72  RRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNH 131
           R  + +  +A+A RER RV+    AF EL++ LP++PPD KLSK+++L LA  YI++L  
Sbjct: 44  RSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR 103

Query: 132 VL 133
            L
Sbjct: 104 SL 105


>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
           sapiens]
          Length = 215

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 85  RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           +ER R E+ N AFAELR+ +P +P D KLSKI+ LRLA  YI+YL  VL
Sbjct: 102 KERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVL 150


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 69  RRRRRATAK-----YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAI 123
           RRRRR  ++      R A   RER R+++ N AF  LR  +PTLP +K+LSK++ LRLAI
Sbjct: 150 RRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAI 209

Query: 124 CYISYLNHVL 133
            YI++L+ ++
Sbjct: 210 GYINFLSELV 219


>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
           sapiens]
          Length = 217

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 77  KYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           K R     +ER R ++ N AFAELR+ +P +P D KLSKI+ LRLA  YI+YL  +L
Sbjct: 99  KRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLL 155


>gi|23097242 nephew of atonal 3 [Homo sapiens]
          Length = 166

 Score = 56.2 bits (134), Expect = 8e-09
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 39  EPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFA 98
           E  E  +GDG+             L R   +R+R  T   R A   RER R+   N AF 
Sbjct: 65  EECEVDQGDGEEEEEEERGRGVSLLGRP--KRKRVITYAQRQAANIRERKRMFNLNEAFD 122

Query: 99  ELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
           +LR+ +PT   +K+LS+IE LRLAI YIS++  +L+
Sbjct: 123 QLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLE 158


>gi|4507741 twist [Homo sapiens]
          Length = 202

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 46  GDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLP 105
           G G GG  ++    PQ     E+ + +R  A        RER R ++ N AFA LRK++P
Sbjct: 86  GAGGGGGSSSGGGSPQSY---EELQTQRVMAN------VRERQRTQSLNEAFAALRKIIP 136

Query: 106 TLPPDKKLSKIEILRLAICYISYLNHVL 133
           TLP D KLSKI+ L+LA  YI +L  VL
Sbjct: 137 TLPSD-KLSKIQTLKLAARYIDFLYQVL 163


>gi|38202237 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)

Query: 29  TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74
           T  L  V DL+ VE  E DG        +    + + E                 +RR+A
Sbjct: 3   TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62

Query: 75  TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
             K               R+A   RER R+   + AF+ L+  LP +PPD KLSK++ LR
Sbjct: 63  PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122

Query: 121 LAICYISYLNHVL 133
           LA  YI++L  +L
Sbjct: 123 LASSYIAHLRQIL 135


>gi|38202239 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)

Query: 29  TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74
           T  L  V DL+ VE  E DG        +    + + E                 +RR+A
Sbjct: 3   TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62

Query: 75  TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
             K               R+A   RER R+   + AF+ L+  LP +PPD KLSK++ LR
Sbjct: 63  PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122

Query: 121 LAICYISYLNHVL 133
           LA  YI++L  +L
Sbjct: 123 LASSYIAHLRQIL 135


>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 25/52 (48%), Positives = 37/52 (71%)

Query: 82  HATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           +A RER RV+    AF E+++ LP++PPD KLSK+++L LA  YI++L   L
Sbjct: 54  NAARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105


>gi|17981708 twist homolog 2 [Homo sapiens]
          Length = 160

 Score = 53.5 bits (127), Expect = 5e-08
 Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 85  RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           RER R ++ N AFA LRK++PTLP D KLSKI+ L+LA  YI +L  VL
Sbjct: 74  RERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 121


>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
          Length = 331

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 38  LEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAF 97
           +E  EE E DG+   R          +R E+ R RR  A        RER R+   N A 
Sbjct: 54  IEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKAN------ARERTRMHGLNDAL 107

Query: 98  AELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
             LR+++P     +KLSKIE LRLA  YI  L+ VL+
Sbjct: 108 DNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLE 144


>gi|4885075 atonal homolog 1 [Homo sapiens]
          Length = 354

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 13/113 (11%)

Query: 25  GGTDTKVLGSVSDLEPVEEAEG----DGKGGSRAALYPHPQQLSREEKRRRRRATAKYRS 80
           G + +K  G V   E + + +G    D  G SR    P  +Q++  +K+RR  A A    
Sbjct: 112 GASSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRA-PSSKQVNGVQKQRRLAANA---- 166

Query: 81  AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
               RER R+   N AF +LR ++P+   DKKLSK E L++A  YI+ L+ +L
Sbjct: 167 ----RERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELL 215


>gi|21553337 atonal homolog 7 [Homo sapiens]
          Length = 152

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 71  RRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLN 130
           R  + A+ R A   RER R++  N AF  LR+++P    DKKLSK E L++A+ YI  L 
Sbjct: 34  RLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALT 93

Query: 131 HVL 133
            +L
Sbjct: 94  RIL 96


>gi|75677394 transcription factor 23 [Homo sapiens]
          Length = 214

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 82  HATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
           +A RER RV     AF  L+  LP +PPD KLSK+++L LA  YI++L   L
Sbjct: 81  NAARERSRVRTLRQAFLALQAALPAVPPDTKLSKLDVLVLAASYIAHLTRTL 132


>gi|38455396 neurogenin 1 [Homo sapiens]
          Length = 237

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 38/95 (40%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 52  SRAALYPHPQQLSREEKRRRRRATAKYRSA---HATR----------ERIRVEAFNLAFA 98
           SRA+  P  Q    E++RRRRR   + RS    H+ R          ER R+   N A  
Sbjct: 56  SRASEVPGAQD--DEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALD 113

Query: 99  ELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
            LR +LP+ P D KL+KIE LR A  YI  L   L
Sbjct: 114 ALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETL 148


>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
          Length = 356

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 6   DQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSR 65
           D+  D     +A  D    GG +      + + E  EE + D K   R    P  ++++ 
Sbjct: 37  DKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRG---PKKKKMT- 92

Query: 66  EEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICY 125
             K R  R   +   A+A RER R+   N A   LRK++P     +KLSKIE LRLA  Y
Sbjct: 93  --KARLERFKLRRMKANA-RERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNY 149

Query: 126 ISYLNHVL 133
           I  L+ +L
Sbjct: 150 IWALSEIL 157


>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
          Length = 337

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 42  EEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHAT-RERIRVEAFNLAFAEL 100
           EE E D +      L P  + L +++  + R    K+R   A  RER R+   N A   L
Sbjct: 59  EEEEEDREEEDENGL-PRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNL 117

Query: 101 RKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 135
           RK++P     +KLSKIE LRLA  YI  L+ +L +
Sbjct: 118 RKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRI 152


>gi|68989258 neurogenin 3 [Homo sapiens]
          Length = 214

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 63  LSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLA 122
           LS++ + RR++A          RER R+   N A   LR +LPT P D KL+KIE LR A
Sbjct: 77  LSKQRRSRRKKAN--------DRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFA 128

Query: 123 ICYISYLNHVLDV 135
             YI  L   L +
Sbjct: 129 HNYIWALTQTLRI 141


>gi|4504573 inhibitor of DNA binding 4, dominant negative
           helix-loop-helix protein [Homo sapiens]
          Length = 161

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 34  SVSDLEPVEEAEGDGKGGSRAALY---PHPQQLSREEKRRRRRATAKYRSAHATRERIRV 90
           +VS + P       G GG   AL     H   L          A A+ ++A A  +   +
Sbjct: 3   AVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPAL 62

Query: 91  EA---FNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
                 N  ++ LR+L+PT+PP+KK+SK+EIL+  I YI  L   L+
Sbjct: 63  CLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILQHVIDYILDLQLALE 109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,488,073
Number of Sequences: 37866
Number of extensions: 234539
Number of successful extensions: 1040
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 156
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.