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Search of human proteins with 50234889
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50234889 RAB43 protein [Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50234889 RAB43 protein [Homo sapiens] 428 e-120
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 236 8e-63
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 202 2e-52
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 185 3e-47
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 182 1e-46
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 181 4e-46
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 179 1e-45
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 179 1e-45
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 179 1e-45
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 179 2e-45
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 176 1e-44
gi|16933567 mel transforming oncogene [Homo sapiens] 176 2e-44
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 176 2e-44
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 175 3e-44
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 173 1e-43
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 171 4e-43
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 168 4e-42
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 167 5e-42
gi|19923483 GTPase Rab14 [Homo sapiens] 164 5e-41
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 162 1e-40
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 161 3e-40
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 160 7e-40
gi|116812567 RAB25 [Homo sapiens] 159 1e-39
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 155 2e-38
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 154 4e-38
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 154 7e-38
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 152 3e-37
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 152 3e-37
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 152 3e-37
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 150 6e-37
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 428 bits (1100), Expect = e-120
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MAGPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
MAGPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL
Sbjct: 1 MAGPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
Query: 61 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA 120
EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA
Sbjct: 61 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA 120
Query: 121 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL
Sbjct: 121 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
Query: 181 IMRHGGPLFSEKSPDHIQLNSKDIGEGWGCGC 212
IMRHGGPLFSEKSPDHIQLNSKDIGEGWGCGC
Sbjct: 181 IMRHGGPLFSEKSPDHIQLNSKDIGEGWGCGC 212
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 236 bits (603), Expect = 8e-63
Identities = 109/193 (56%), Positives = 153/193 (79%)
Query: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
DE +D+LFK++L+GD++VGKTCVVQ FK+G ++E Q +TIGVDFT+++L+I GK+VK+Q+
Sbjct: 11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQV 70
Query: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F S+PHWI ++ KY +N+V +LIGN
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGN 130
Query: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
K DL E R V +A +LAE Y +L +ETSAK+S N+EE F+ +A ELI R+ L+ E
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGE 190
Query: 192 KSPDHIQLNSKDI 204
+ + + L+S +
Sbjct: 191 SALNGLPLDSSPV 203
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 202 bits (514), Expect = 2e-52
Identities = 99/169 (58%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
Query: 13 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 72
E YDFLFK+VL+G+A VGKTC+V+RF G F QG+TIGVDF +KT+EI G++VKLQIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 73 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 132
DTAGQERFR+ITQSYYRSAN IL YDIT SF +P W+ ++ +YA + ++ +L+GNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 133 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 181
DL+E REVS A+ +E D + +ETSAK+S NVE+ FL +A LI
Sbjct: 124 IDLAERREVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI 171
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 185 bits (469), Expect = 3e-47
Identities = 91/198 (45%), Positives = 138/198 (69%), Gaps = 2/198 (1%)
Query: 14 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 73
+YD+LFKL+L+GD+ VGK+C++ RF ++E STIGVDF ++T+E+ GK +KLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 74 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 133
TAGQERFRTIT SYYR A+G I+ YD+T + S+ +V W++++ +YA N+ +LL+GNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 134 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKS 193
DL+ + V A+ A+ I +ETSAK+++NVE+AF+ +A E+ R G S
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGI-PFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182
Query: 194 PDHIQLNSKDI-GEGWGC 210
+++++S + G GC
Sbjct: 183 RPNLKIDSTPVKPAGGGC 200
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 182 bits (463), Expect = 1e-46
Identities = 90/199 (45%), Positives = 137/199 (68%), Gaps = 3/199 (1%)
Query: 14 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 73
+YD+LFKL+L+GD+ VGK+C++ RF ++E STIGVDF ++T+E+ GK +KLQIWD
Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 66
Query: 74 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 133
TAGQERFRTIT SYYR A+G I+ YD+T + SF +V W++++ +YA N+ +LL+GNK
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 126
Query: 134 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG-GPLFSEK 192
DL+ + V A+ A+ I +ETSAK+++NVE++F+ +A E+ R G G
Sbjct: 127 DLTTKKVVDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 185
Query: 193 SPDHIQLNSKDIGE-GWGC 210
++++ S + + G GC
Sbjct: 186 EKSNVKIQSTPVKQSGGGC 204
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 181 bits (459), Expect = 4e-46
Identities = 85/169 (50%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
YD+LFKL+L+GD+ VGKTC++ RF AF+ STIG+DF ++T+E+ GK++KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQERFRTIT +YYR A G +L YDIT SF ++ +WI ++ ++A S++ ++++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 183
+++ R+VS + LA Y I +ETSAK S+NVEEAF +A +++ +
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIK-FLETSAKSSANVEEAFFTLARDIMTK 172
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 179 bits (455), Expect = 1e-45
Identities = 89/189 (47%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Query: 2 AGPGPGPGDP----DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTM 57
A P P P P + YD LFKL+L+GD+ VGKTC++ RF F+ STIG+DF +
Sbjct: 112 AHPIPSPAPPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKI 171
Query: 58 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 117
+T++I+GK++KLQ+WDTAGQERF+TIT +YYR A G ILAYDIT SF ++ +W++ +
Sbjct: 172 RTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIM 231
Query: 118 KYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 177
+ A + + LL+GNK D+ R+V +A LA + I ETSAK S NV+EAF +A
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLA 290
Query: 178 TELIMRHGG 186
+++++ GG
Sbjct: 291 RDILLKSGG 299
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 179 bits (455), Expect = 1e-45
Identities = 89/189 (47%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Query: 2 AGPGPGPGDP----DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTM 57
A P P P P + YD LFKL+L+GD+ VGKTC++ RF F+ STIG+DF +
Sbjct: 112 AHPIPSPAPPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKI 171
Query: 58 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 117
+T++I+GK++KLQ+WDTAGQERF+TIT +YYR A G ILAYDIT SF ++ +W++ +
Sbjct: 172 RTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIM 231
Query: 118 KYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 177
+ A + + LL+GNK D+ R+V +A LA + I ETSAK S NV+EAF +A
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLA 290
Query: 178 TELIMRHGG 186
+++++ GG
Sbjct: 291 RDILLKSGG 299
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 179 bits (455), Expect = 1e-45
Identities = 89/189 (47%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Query: 2 AGPGPGPGDP----DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTM 57
A P P P P + YD LFKL+L+GD+ VGKTC++ RF F+ STIG+DF +
Sbjct: 112 AHPIPSPAPPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKI 171
Query: 58 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 117
+T++I+GK++KLQ+WDTAGQERF+TIT +YYR A G ILAYDIT SF ++ +W++ +
Sbjct: 172 RTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIM 231
Query: 118 KYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 177
+ A + + LL+GNK D+ R+V +A LA + I ETSAK S NV+EAF +A
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLA 290
Query: 178 TELIMRHGG 186
+++++ GG
Sbjct: 291 RDILLKSGG 299
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 179 bits (454), Expect = 2e-45
Identities = 88/172 (51%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Query: 9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 68
G D++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ GK +K
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 69 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
QIWDTAGQER+R IT +YYR A GA+L YDI K ++ +V W++++R +A SNIV +L
Sbjct: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
Query: 129 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
+GNKSDL LR V EA++ AE + L IETSA DS+NVEEAF + TE+
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 172
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 176 bits (447), Expect = 1e-44
Identities = 83/172 (48%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
YD LFKL+L+GD+ VGKTC++ RF F+ STIG+DF ++T++I+GK++KLQ+WDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQERF+TIT +YYR A G IL YDIT SF ++ +W++ +++ A + + +LL+GNK D
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 186
+ R+V +A LA + I ETSAK S NV+EAF +A +++++ GG
Sbjct: 125 MEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLARDILLKSGG 175
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 176 bits (445), Expect = 2e-44
Identities = 84/166 (50%), Positives = 122/166 (73%), Gaps = 1/166 (0%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
YD+LFKL+L+GD+ VGKTCV+ RF AF+ STIG+DF ++T+E+ GKR+KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQERFRTIT +YYR A G +L YDIT SF ++ +WI ++ ++A +++ ++++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
+++ R+VS + LA Y I +ETSAK + NVE AF +A ++
Sbjct: 125 VNDKRQVSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDI 169
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 176 bits (445), Expect = 2e-44
Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 68
G D++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ GK +K
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 69 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
QIWDTAGQER+R IT +YYR A GA+L YDI K ++ +V W++++R +A SNIV +L
Sbjct: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
Query: 129 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
+GNKSDL LR V EA++ AE + L IETSA DS+NVE AF + TE+
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 172
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 175 bits (443), Expect = 3e-44
Identities = 92/214 (42%), Positives = 130/214 (60%), Gaps = 19/214 (8%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
Y +LFK +++GD VGK+C++ +F F TIGV+F + + I GK++KLQIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQE FR+IT+SYYR A GA+L YDIT+R +F + W+ED R+++ SN+V +LIGNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLF----- 189
L R+V E ++ A + ++ +ETSAK + NVEEAF+ A E+ + LF
Sbjct: 123 LESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNE 181
Query: 190 -------------SEKSPDHIQLNSKDIGEGWGC 210
+ P Q NS+DIG GC
Sbjct: 182 ANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGC 215
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 173 bits (438), Expect = 1e-43
Identities = 87/198 (43%), Positives = 130/198 (65%), Gaps = 4/198 (2%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
YD LFKL+L+GD+ VGKTCV+ RF AF+ STIG+DF +KT+E+QGK++KLQIWDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQERF TIT SYYR A G +L YDIT SF ++ W+ ++ ++A ++ ++L+GNK D
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSP 194
+ + R V + +A + I ETSAK + N+E+AFL +A +++ + E +
Sbjct: 126 MDDKRVVPKGKGGQIAREHGIR-FFETSAKANINIEKAFLTLAEDILRK---TPVKEPNS 181
Query: 195 DHIQLNSKDIGEGWGCGC 212
+++ ++S GW C
Sbjct: 182 ENVDISSGGGVTGWKSKC 199
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 171 bits (433), Expect = 4e-43
Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
Y +LFK +++GD VGK+C++ +F F TIGV+F + + I GK++KLQIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQE FR+IT+SYYR A GA+L YDIT+R +F + W+ED R+++ SN+V +LIGNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
L REV E ++ A + ++ +ETSAK +SNVEEAF+ A E+
Sbjct: 123 LESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAKEI 167
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 168 bits (425), Expect = 4e-42
Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 2/187 (1%)
Query: 13 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 72
E YDFLFK +++G A GK+C++ +F F + TIGV+F + + + GK VKLQIW
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 73 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 132
DTAGQERFR++T+SYYR A GA+L YDIT R ++ S+ W+ D R A NIV +L GNK
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 133 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR-HGGPLFSE 191
DL REV+ EA A+ +++ +ETSA NVEEAFL+ A ++ + G L E
Sbjct: 123 KDLDPEREVTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILNKIDSGELDPE 181
Query: 192 KSPDHIQ 198
+ IQ
Sbjct: 182 RMGSGIQ 188
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 167 bits (424), Expect = 5e-42
Identities = 86/187 (45%), Positives = 122/187 (65%), Gaps = 2/187 (1%)
Query: 13 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 72
E YDFLFK +++G+A GK+C++ +F F + TIGV+F K + + GK VKLQIW
Sbjct: 8 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 67
Query: 73 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 132
DTAGQERFR++T+SYYR A GA+L YDIT R ++ ++ +W+ D R A NIV +L GNK
Sbjct: 68 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 127
Query: 133 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR-HGGPLFSE 191
DL REV+ EA A+ +++ +ETSA NVEEAF++ A +++ + G L E
Sbjct: 128 KDLDADREVTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGELDPE 186
Query: 192 KSPDHIQ 198
+ IQ
Sbjct: 187 RMGSGIQ 193
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 164 bits (415), Expect = 5e-41
Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 12/209 (5%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
Y ++FK +++GD VGK+C++ +F F TIGV+F + +E+ G+++KLQIWDT
Sbjct: 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQERFR +T+SYYR A GA++ YDIT+RS++ + W+ D R N V +LIGNK+D
Sbjct: 68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 127
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR----------- 183
L R+V+ EA+ AE +L +E SAK NVE+AFL A ++
Sbjct: 128 LEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAA 186
Query: 184 HGGPLFSEKSPDHIQLNSKDIGEGWGCGC 212
G +P +L S+ + GCGC
Sbjct: 187 ESGVQHKPSAPQGGRLTSEPQPQREGCGC 215
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 162 bits (411), Expect = 1e-40
Identities = 77/181 (42%), Positives = 117/181 (64%)
Query: 3 GPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI 62
G G P DF +++++G VGKT +++RF F E ST+GVDF +KT+E+
Sbjct: 27 GQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL 86
Query: 63 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS 122
+GK+++LQIWDTAGQERF +IT +YYRSA G IL YDITK+ +F +P W++ + KYA
Sbjct: 87 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE 146
Query: 123 NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 182
+ LL+GNK D RE++ + + A+ + E SAKD+ NV+E FL++ +++
Sbjct: 147 DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 206
Query: 183 R 183
+
Sbjct: 207 K 207
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 161 bits (408), Expect = 3e-40
Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 11/213 (5%)
Query: 4 PG-PGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQG-STIGVDFTMKTLE 61
PG P G + YD FK++LVGD+ VGKTC++ RFK GAF ST+G+DF K L+
Sbjct: 48 PGRPSLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD 107
Query: 62 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 121
+ G +VKLQ+WDTAGQERFR++T +YYR A+ +L YD+T ++SF ++ W+ ++ +YA
Sbjct: 108 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 167
Query: 122 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 181
++ +L+GNK D + R V + + LA+ Y L +ETSAK NV+ AF +A EL
Sbjct: 168 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK 226
Query: 182 MRHGGPLFSEKSPDHIQLNSKDI--GEGWGCGC 212
R S K+P + D EG G C
Sbjct: 227 QR------SMKAPSEPRFRLHDYVKREGRGASC 253
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 160 bits (405), Expect = 7e-40
Identities = 85/185 (45%), Positives = 119/185 (64%), Gaps = 3/185 (1%)
Query: 3 GPGPGPGDP-DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTL 60
G P P YD K++L+GD VGKTC + +FK GAF S +T+G+DF K +
Sbjct: 13 GEAPERSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVV 72
Query: 61 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA 120
+ G RVKLQIWDTAGQERFR++T +YYR A +L YDIT +SSF ++ W+ ++ +YA
Sbjct: 73 TVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYA 132
Query: 121 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
++V +L+GNK+D+S R + + ++LA Y + +ETSAK NVE AFL +A EL
Sbjct: 133 QRDVVIMLLGNKADMSSERVIRSEDGETLAREYGV-PFLETSAKTGMNVELAFLAIAKEL 191
Query: 181 IMRHG 185
R G
Sbjct: 192 KYRAG 196
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 159 bits (403), Expect = 1e-39
Identities = 86/200 (43%), Positives = 127/200 (63%), Gaps = 1/200 (0%)
Query: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
+E Y+F+FK+VL+G++ VGKT ++ RF FS +TIGV+F+ +T+ + VK QI
Sbjct: 6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 65
Query: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
WDTAG ER+R IT +YYR A GA+L +D+TK ++ V W++++ +A + IV +L+GN
Sbjct: 66 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 125
Query: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
KSDLS+ REV EA+ AE+ +L +ETSA DS+NVE AF V E+ + +
Sbjct: 126 KSDLSQAREVPTEEARMFAENNGLL-FLETSALDSTNVELAFETVLKEIFAKVSKQRQNS 184
Query: 192 KSPDHIQLNSKDIGEGWGCG 211
+ I L S G+ G G
Sbjct: 185 IRTNAITLGSAQAGQEPGPG 204
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 155 bits (392), Expect = 2e-38
Identities = 82/180 (45%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 7 GPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGS-TIGVDFTMKTLEIQGK 65
G PD L K +LVGD+ VGKT ++ +F G F S T+G+ FT K + + G
Sbjct: 11 GGAGPDFNDHVLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGV 70
Query: 66 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV 125
RVKLQIWDTAGQERFR++T +YYR A +L YDIT +SSF ++ W+ ++ +YA ++V
Sbjct: 71 RVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVV 130
Query: 126 QLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 185
+L+GNK+D+S R + + ++LA Y + +ETSAK NVE AFL +A EL R G
Sbjct: 131 IMLLGNKADMSSERVIRSEDGETLAREYGV-PFLETSAKTGMNVELAFLAIAKELKYRAG 189
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 154 bits (390), Expect = 4e-38
Identities = 79/169 (46%), Positives = 114/169 (67%), Gaps = 3/169 (1%)
Query: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
YD LFKL+++GD+ VGK+ ++ RF FS +TIGVDF ++T+EI G++VKLQIWDT
Sbjct: 5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 64
Query: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
AGQERFRTIT +YYR +G I+ YD+T SF++V W+ ++ + ++ ++L+GNK+D
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND 123
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 183
E + V +A A I ETSAK++ NVEE F TEL++R
Sbjct: 124 DPERKVVETEDAYKFAGQMGIQ-LFETSAKENVNVEEMF-NCITELVLR 170
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 154 bits (388), Expect = 7e-38
Identities = 77/166 (46%), Positives = 120/166 (72%), Gaps = 3/166 (1%)
Query: 17 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTA 75
+ F+L+++GD++VGK+C+++RF G F++ T+GVDF + +EI+ GKR+KLQIWDTA
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66
Query: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS-NIVQLLIGNKSD 134
GQERFR+IT++YYR++ G +L +DIT R SF +V W+E+ + + IV +L+G+K D
Sbjct: 67 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126
Query: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
L R+V+ EA+ LA Y + IETSA+D+ NVE+AF + ++
Sbjct: 127 LDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDLTRDI 171
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 152 bits (383), Expect = 3e-37
Identities = 82/197 (41%), Positives = 123/197 (62%), Gaps = 5/197 (2%)
Query: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
FKLV +G+ SVGKT ++ RF +F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
Query: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 138
RFR++ SY R + A++ YDIT +SF WI+DVR GS+++ +L+GNK+DL++
Sbjct: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 139 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQ 198
R+VS+ E + A+ +++ IETSAK NV++ F RVA L S + I+
Sbjct: 134 RQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 199 L---NSKDIGEGWGCGC 212
L + + EG GC C
Sbjct: 193 LEKPQEQPVSEG-GCSC 208
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 152 bits (383), Expect = 3e-37
Identities = 81/197 (41%), Positives = 123/197 (62%), Gaps = 5/197 (2%)
Query: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
FKLV +G+ SVGKT ++ RF +F +TIG+DF KT+ ++ + ++LQ+WDTAGQE
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 73
Query: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 138
RFR++ SY R + A++ YDIT +SF WI+DVR GS+++ +L+GNK+DL++
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 139 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQ 198
R+VS+ E + A+ +++ IETSAK NV++ F RVA L S + I+
Sbjct: 134 RQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 199 L---NSKDIGEGWGCGC 212
L + + EG GC C
Sbjct: 193 LEKPQEQPVSEG-GCSC 208
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 152 bits (383), Expect = 3e-37
Identities = 75/165 (45%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
Query: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
D+ +D++FK++++G++SVGKT + R+ +F+ ST+G+DF +KT+ KR+KLQI
Sbjct: 16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 75
Query: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
WDTAGQER+RTIT +YYR A G IL YDIT SF +V W ++ Y+ N LL+GN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 135
Query: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 176
K D+ + R VS + LA+H E SAKD+ NV++ F R+
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERL 179
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 150 bits (380), Expect = 6e-37
Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
D+ +D++FKL+++G++SVGKT + R+ +F+ ST+G+DF +KT+ KR+KLQI
Sbjct: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQI 83
Query: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
WDTAGQER+RTIT +YYR A G IL YDIT SF +V W ++ Y+ N +L+GN
Sbjct: 84 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 143
Query: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 176
K D+ + R +S Q L E ETSAKD+ NV++ F R+
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGFE-FFETSAKDNINVKQTFERL 187
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,144,519
Number of Sequences: 37866
Number of extensions: 310335
Number of successful extensions: 1531
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 261
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.