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Search of human proteins with 4758984
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 430 e-121
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 387 e-108
gi|116812567 RAB25 [Homo sapiens] 255 2e-68
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 190 9e-49
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 188 3e-48
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 187 8e-48
gi|19923483 GTPase Rab14 [Homo sapiens] 184 4e-47
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 184 4e-47
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 184 6e-47
gi|16933567 mel transforming oncogene [Homo sapiens] 177 6e-45
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 177 8e-45
gi|50234889 RAB43 protein [Homo sapiens] 176 2e-44
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 173 9e-44
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 172 3e-43
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 171 6e-43
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 171 6e-43
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 171 6e-43
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 169 1e-42
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 167 5e-42
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 164 7e-41
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 159 2e-39
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 157 5e-39
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 157 5e-39
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 157 8e-39
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 156 1e-38
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 155 2e-38
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 155 2e-38
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 155 3e-38
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 154 7e-38
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 153 9e-38
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 430 bits (1105), Expect = e-121
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 181 MSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI 216
MSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI 216
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 387 bits (995), Expect = e-108
Identities = 199/218 (91%), Positives = 206/218 (94%), Gaps = 2/218 (0%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 255 bits (652), Expect = 2e-68
Identities = 127/186 (68%), Positives = 156/186 (83%), Gaps = 1/186 (0%)
Query: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
GT +D Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + +K
Sbjct: 4 GTEED-YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 62
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
AQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+ML
Sbjct: 63 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 122
Query: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM 181
VGNKSDL R VPT+EAR FAE NGL F+ETSALDSTNVE AF+T+L EI+ VS+++
Sbjct: 123 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQ 182
Query: 182 SDRREN 187
+ R N
Sbjct: 183 NSIRTN 188
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 190 bits (482), Expect = 9e-49
Identities = 95/171 (55%), Positives = 119/171 (69%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQ 178
L R V +E AFA ++GL F+ETSA + NVE AF EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 188 bits (477), Expect = 3e-48
Identities = 94/171 (54%), Positives = 120/171 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQ 178
L R V +E AFA ++GL F+ETSA ++NVE AF EIY + +
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 187 bits (474), Expect = 8e-48
Identities = 93/166 (56%), Positives = 122/166 (73%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 126
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 127 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
DL + V A+ FA+ G+ F+ETSA ++TNVE AF T+ EI
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 184 bits (468), Expect = 4e-47
Identities = 92/174 (52%), Positives = 119/174 (68%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174
L+GNK+DL R V +EA+ FAE+NGL F+E SA NVE AF +IY+
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 174
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 184 bits (468), Expect = 4e-47
Identities = 93/202 (46%), Positives = 134/202 (66%), Gaps = 9/202 (4%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRREN 187
+ R V + A G+ F+ETSA S NVE AF T+ +I +++K N
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKM------N 178
Query: 188 DMSPSNNVVPIHVPPTTENKPK 209
D + + P+ + TEN+ K
Sbjct: 179 DSNSAGAGGPVKI---TENRSK 197
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 184 bits (466), Expect = 6e-47
Identities = 91/172 (52%), Positives = 124/172 (72%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
M + + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTI
Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A N+ +
Sbjct: 61 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
LVGNK DL + V A+ FA+ G+ F+ETSA ++TNVE +F T+ EI
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 177 bits (449), Expect = 6e-45
Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 6/206 (2%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YDYLFK++LIGDSGVGK+ +L RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER+R IT+AYYRGA+G +LVYDI +++N+ W++ + +HA +++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRREN 187
+ R V + A G+ F+ETSA + NVE AF T+ +I K D++
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI------KAKMDKKLE 178
Query: 188 DMSPSNNVVPIHVPPTTENKPKVQCC 213
SP + + + P + + C
Sbjct: 179 GNSPQGSNQGVKITPDQQKRSSFFRC 204
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 177 bits (448), Expect = 8e-45
Identities = 92/171 (53%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
+ YD+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + V GKT+K QIW
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125
DTAGQER+R++T +YYRGA GALLVYDI TY ++ WL + R A NIV++L GNK
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF----QTILTEI 172
DL R V EA FA++N L F+ETSAL NVE AF +TIL +I
Sbjct: 123 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 173
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 176 bits (445), Expect = 2e-44
Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
G D++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ GK +K
Sbjct: 9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 68
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
QIWDTAGQER+R IT +YYR A GA+L YDI K ++ +V W++++R +A SNIV +L
Sbjct: 69 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
Query: 122 VGNKSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 172
+GNKSDL LR V EA++ AE + L IETSA DS+NVE AF + TE+
Sbjct: 129 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 173 bits (439), Expect = 9e-44
Identities = 78/165 (47%), Positives = 119/165 (72%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +LVYDI ++EN++ W+K ++++A + + +L+GNK D
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
+ R V ++A A ++G+ F ETSA S NV+ AF ++ +I
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 172 bits (435), Expect = 3e-43
Identities = 81/173 (46%), Positives = 120/173 (69%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++++ GK IK QIWDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER+ IT++YYRGA+G +LVYDI ++EN+ +WL+ + +HA+ ++ ML+GNK D
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
+ R VP + A ++G+ F ETSA + N+E AF T+ +I R K+
Sbjct: 126 MDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE 178
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 171 bits (432), Expect = 6e-43
Identities = 77/165 (46%), Positives = 117/165 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +L YDI ++EN++ W+K + ++A + + +L+GNK D
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
+ R V ++A A ++G+ F ETSA S NV+ AF ++ +I
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 293
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 171 bits (432), Expect = 6e-43
Identities = 77/165 (46%), Positives = 117/165 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +L YDI ++EN++ W+K + ++A + + +L+GNK D
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
+ R V ++A A ++G+ F ETSA S NV+ AF ++ +I
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 293
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 171 bits (432), Expect = 6e-43
Identities = 77/165 (46%), Positives = 117/165 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +L YDI ++EN++ W+K + ++A + + +L+GNK D
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
+ R V ++A A ++G+ F ETSA S NV+ AF ++ +I
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 293
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 169 bits (429), Expect = 1e-42
Identities = 89/180 (49%), Positives = 115/180 (63%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I V GK +K QIW
Sbjct: 8 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 67
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125
DTAGQER+R++T +YYRGA GALLVYDI TY + WL + R A NIVI+L GNK
Sbjct: 68 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 127
Query: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRR 185
DL R V EA FA++N L F+ETSAL NVE AF +I + ++ R
Sbjct: 128 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPER 187
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 167 bits (424), Expect = 5e-42
Identities = 87/207 (42%), Positives = 132/207 (63%), Gaps = 9/207 (4%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
+YD+LFK+++IGDSGVGKS+LL RF N F+ +TIGV+F R+++++G+ +K QIWD
Sbjct: 4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 126
TAGQER+R ITS YYRG G ++VYD+ ++ NV+RWL E+ + D ++ +LVGNK+
Sbjct: 64 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 122
Query: 127 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRE 186
D + V T++A FA + G+ ETSA ++ NVE F I +V + + + +
Sbjct: 123 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT----ELVLRAKKDNLAK 178
Query: 187 NDMSPSNNVVPIHVPPTTENKPKVQCC 213
N+VV + T +K K +CC
Sbjct: 179 QQQQQQNDVVKL----TKNSKRKKRCC 201
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 164 bits (414), Expect = 7e-41
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D+ +DYLFK++LIGDS VGK+ ++ F + ++TIGV+F RS+ +DGK +K Q+
Sbjct: 11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQV 70
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQER+R IT +YYR A A++ YD+ + T+E++ W+ E+ + +N+VIML+GN
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGN 130
Query: 125 KSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 172
K DL R V ++A AEK G L+ +ETSA +S N+E F + E+
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 159 bits (402), Expect = 2e-39
Identities = 82/175 (46%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTA 68
Y F++++IGDS VGKS L+ RFT F S T+GV+F +R ++++ GK IK QIWDTA
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIMLVGNKSD 127
GQER+R+IT AYYR +VG LL++DI +++NV WL+E + H IV +LVG+K D
Sbjct: 67 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126
Query: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182
L R V EA A G+ +IETSA D+ NVE AF + +IY +V + +++
Sbjct: 127 LDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEIT 181
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 157 bits (398), Expect = 5e-39
Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI T+ + W+KEL+ A NIVI L GNK+DL
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDM-S 190
RAV EA+A+A+ N L F+ETSA + NV EI+ +++K + +N +
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNATGA 193
Query: 191 PSNNVVPIHVPPTTENKP--KVQCCQN 215
P N EN P + QCC N
Sbjct: 194 PGRN----RGVDLQENNPASRSQCCSN 216
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 157 bits (398), Expect = 5e-39
Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI T+ + W+KEL+ A NIVI L GNK+DL
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDM-S 190
RAV EA+A+A+ N L F+ETSA + NV EI+ +++K + +N +
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNATGA 193
Query: 191 PSNNVVPIHVPPTTENKP--KVQCCQN 215
P N EN P + QCC N
Sbjct: 194 PGRN----RGVDLQENNPASRSQCCSN 216
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 157 bits (396), Expect = 8e-39
Identities = 84/204 (41%), Positives = 126/204 (61%), Gaps = 9/204 (4%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI ++ + W+KEL+ A NIVI L GNK+DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSP 191
RAV EA+++A+ N L F+ETSA S NV EI+ +++K + +N +
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKKLPKNEPQNPGAN 192
Query: 192 SNNVVPIHVPPTTENKPKVQCCQN 215
S + + T+ + QCC N
Sbjct: 193 SARGRGVDLTEPTQ-PTRNQCCSN 215
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 156 bits (394), Expect = 1e-38
Identities = 77/193 (39%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D +DY+FK++LIG+S VGK++ L R+ + F ST+G++F +++ K IK QI
Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQERYR IT+AYYRGA+G LL+YDIA ++ V+ W +++ ++ N ++LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
Query: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDR 184
K DL R VP ++ R A+ G F E SA ++ NV+ F+ ++ ++ +K
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD----VICEKMNESL 191
Query: 185 RENDMSPSNNVVP 197
+ S SN P
Sbjct: 192 EPSSSSGSNGKGP 204
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 155 bits (393), Expect = 2e-38
Identities = 77/186 (41%), Positives = 120/186 (64%), Gaps = 3/186 (1%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
++YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F ++++++G+ +K QIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125
DTAGQER+R+IT +YYR A +L YDI ++ + WL+E+ +A + ++ +LVGNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRR 185
DL R V A F+E + ++ETSA +S NVE F L R++S+ + +
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF---LDLACRLISEARQNTLV 180
Query: 186 ENDMSP 191
N SP
Sbjct: 181 NNVSSP 186
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 155 bits (392), Expect = 2e-38
Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKT 59
+G D YD FKV+L+GDSGVGK+ LL RF F + ST+G++F + + VDG
Sbjct: 53 LGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK 112
Query: 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 119
+K Q+WDTAGQER+R++T AYYR A LL+YD+ +++N++ WL E+ ++A ++ +
Sbjct: 113 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 172
Query: 120 MLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
ML+GNK D H R V ++ A++ GL F+ETSA NV+ AF I E+
Sbjct: 173 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 225
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 155 bits (391), Expect = 3e-38
Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 9/204 (4%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+S+ +D T+K +IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 80
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI T+ + W+KEL+ A +IVI L GNK+DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 140
Query: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSP 191
R V +EA+A+A+ N L F+ETSA + NV F I ++ + Q +
Sbjct: 141 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNL------GGAAG 194
Query: 192 SNNVVPIHVPPTTENKPKVQCCQN 215
+ V +H + K QCC N
Sbjct: 195 RSRGVDLH---EQSQQNKSQCCSN 215
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 154 bits (388), Expect = 7e-38
Identities = 79/209 (37%), Positives = 127/209 (60%), Gaps = 8/209 (3%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 68
D+ +V++IG GVGK++L+ RFT + F KST+GV+F +++++ GK I+ QIWDTA
Sbjct: 40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 128
GQER+ +ITSAYYR A G +LVYDI K T++++ +W+K + +A + ++LVGNK D
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
Query: 129 RHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRREN 187
R + + FA++ G+ F E SA D+ NV+ F ++ +I + + + + N
Sbjct: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
Query: 188 ---DMSPSNNVVPIHVPPTTENKPKVQCC 213
+ P + P PP +P V+CC
Sbjct: 220 SILSLQPEPEIPPELPPP----RPHVRCC 244
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 153 bits (387), Expect = 9e-38
Identities = 74/186 (39%), Positives = 118/186 (63%), Gaps = 5/186 (2%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QI
Sbjct: 16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 75
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 135
Query: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDR 184
K D+ R VPT++ + AE+ G F E SA ++ +V AF+ ++ I +MSD
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC-----DKMSDS 190
Query: 185 RENDMS 190
+ D S
Sbjct: 191 LDTDPS 196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,051,273
Number of Sequences: 37866
Number of extensions: 254527
Number of successful extensions: 1298
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 276
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.