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Search of human proteins with 47086495
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47086495 biogenesis of lysosomal organelles complex-1,
subunit 3 [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47086495 biogenesis of lysosomal organelles complex-1, subuni... 396 e-111
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 5e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 5e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 5e-04
gi|239744970 PREDICTED: hypothetical protein XP_002343319 [Homo ... 40 0.001
gi|190684671 mitogen-activated protein kinase binding protein 1 ... 40 0.002
gi|190684677 mitogen-activated protein kinase binding protein 1 ... 40 0.002
gi|102469037 jun D proto-oncogene [Homo sapiens] 38 0.005
gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform ... 38 0.005
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 38 0.005
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 38 0.005
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 38 0.005
gi|30089948 protein phosphatase 1E [Homo sapiens] 37 0.009
gi|156416026 zinc finger protein 219 [Homo sapiens] 37 0.009
gi|156415998 zinc finger protein 219 [Homo sapiens] 37 0.009
gi|156415996 zinc finger protein 219 [Homo sapiens] 37 0.009
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 37 0.011
gi|71043876 undifferentiated embryonic cell transcription factor... 37 0.011
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 37 0.015
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 37 0.015
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens] 36 0.019
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens] 36 0.019
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 36 0.019
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens] 36 0.019
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 36 0.019
gi|109826351 melanophilin isoform 2 [Homo sapiens] 36 0.019
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 36 0.025
gi|29826321 adducin 1 (alpha) isoform b [Homo sapiens] 35 0.033
gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens] 35 0.033
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 35 0.033
>gi|47086495 biogenesis of lysosomal organelles complex-1, subunit 3
[Homo sapiens]
Length = 202
Score = 396 bits (1018), Expect = e-111
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA 60
MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA
Sbjct: 1 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA 60
Query: 61 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL 120
AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL
Sbjct: 61 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL 120
Query: 121 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC 180
DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC
Sbjct: 121 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC 180
Query: 181 RLLPDIRGVPGTEPEKDPGPRA 202
RLLPDIRGVPGTEPEKDPGPRA
Sbjct: 181 RLLPDIRGVPGTEPEKDPGPRA 202
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 41.6 bits (96), Expect = 5e-04
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 26/159 (16%)
Query: 5 GRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETD 64
G++ + ETV G+ATE + S+ + SGPT G P+ A
Sbjct: 130 GQKGLRISAEETVARGKATEAPKRSALSAGARRDT----SGPTPGTPSPAMARRSRAAGT 185
Query: 65 SEPEPEPEPTAAPRDLPPLVVQRESAEEA--WGTEEAPAPAPARSLLQLRLAESQARLDH 122
P P P+A PR PP R+S A T E P+PA R
Sbjct: 186 EVGLPRPAPSARPR--PPTEGPRKSVSSASEHSTTE-PSPAARRR--------------- 227
Query: 123 DVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVR 161
+A G+ R A R +++ A+ L++ +G +A + R
Sbjct: 228 --PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPR 264
Score = 30.4 bits (67), Expect = 1.1
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 41 LGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAA-------PRDLPPLVVQRESAEEA 93
LG +G +P R G T E P PT + P PP + E A A
Sbjct: 47 LGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPA 106
Query: 94 WGTEEAPAPAPARS 107
T P +P R+
Sbjct: 107 KNTSPGPVSSPGRA 120
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 41.6 bits (96), Expect = 5e-04
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 26/159 (16%)
Query: 5 GRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETD 64
G++ + ETV G+ATE + S+ + SGPT G P+ A
Sbjct: 130 GQKGLRISAEETVARGKATEAPKRSALSAGARRDT----SGPTPGTPSPAMARRSRAAGT 185
Query: 65 SEPEPEPEPTAAPRDLPPLVVQRESAEEA--WGTEEAPAPAPARSLLQLRLAESQARLDH 122
P P P+A PR PP R+S A T E P+PA R
Sbjct: 186 EVGLPRPAPSARPR--PPTEGPRKSVSSASEHSTTE-PSPAARRR--------------- 227
Query: 123 DVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVR 161
+A G+ R A R +++ A+ L++ +G +A + R
Sbjct: 228 --PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPR 264
Score = 30.4 bits (67), Expect = 1.1
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 41 LGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAA-------PRDLPPLVVQRESAEEA 93
LG +G +P R G T E P PT + P PP + E A A
Sbjct: 47 LGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPA 106
Query: 94 WGTEEAPAPAPARS 107
T P +P R+
Sbjct: 107 KNTSPGPVSSPGRA 120
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 41.6 bits (96), Expect = 5e-04
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 26/159 (16%)
Query: 5 GRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETD 64
G++ + ETV G+ATE + S+ + SGPT G P+ A
Sbjct: 121 GQKGLRISAEETVARGKATEAPKRSALSAGARRDT----SGPTPGTPSPAMARRSRAAGT 176
Query: 65 SEPEPEPEPTAAPRDLPPLVVQRESAEEA--WGTEEAPAPAPARSLLQLRLAESQARLDH 122
P P P+A PR PP R+S A T E P+PA R
Sbjct: 177 EVGLPRPAPSARPR--PPTEGPRKSVSSASEHSTTE-PSPAARRR--------------- 218
Query: 123 DVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVR 161
+A G+ R A R +++ A+ L++ +G +A + R
Sbjct: 219 --PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPR 255
Score = 32.0 bits (71), Expect = 0.37
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 41 LGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAP 100
LG +G +P R G T E P PT R PP + E A A T P
Sbjct: 47 LGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSR--PPASGRGERAPPAKNTSPGP 104
Query: 101 APAPARS 107
+P R+
Sbjct: 105 VSSPGRA 111
>gi|239744970 PREDICTED: hypothetical protein XP_002343319 [Homo
sapiens]
Length = 368
Score = 40.4 bits (93), Expect = 0.001
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 6 RRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGP-SGPTRGRPTGLRVAGEAAETD 64
RR + RR G A+ +R + +S++ + P +G RP + GEAA D
Sbjct: 131 RRGKLGRRCPRSARGRASSPPVQRESRASQDPDHSAAPGAGGLVARPAEC-LRGEAASMD 189
Query: 65 SEPE----PEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQAR- 119
S+ P PE + P V + + P P+ +R L LR A+ QAR
Sbjct: 190 SKARQGRRPRPELRGTTQLSSPWVPR----------SQLPGPSLSRPLRSLR-AKLQARH 238
Query: 120 ---LDHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAA 156
H A V ++R+ D AALA+R A+ AG++A
Sbjct: 239 VSGAGHPAAGLVPALWRQ---DKAALAARCASCPTAGVSA 275
>gi|190684671 mitogen-activated protein kinase binding protein 1
isoform a [Homo sapiens]
Length = 1508
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 44 SGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPA 103
SGP R + + G A +DS+ E E E T +LP L V +S ++A + P+PA
Sbjct: 760 SGPNRHQAPSMLSPGPALSSDSDKEGEDEGT--EEELPALPVLAKSTKKALAS--VPSPA 815
Query: 104 PARSLLQLRLAESQARLDH-DVAAAVSGVYRRAGR 137
RSL ++ +Q + D A A + RR GR
Sbjct: 816 LPRSLSHWEMSRAQESVGFLDPAPAANPGPRRRGR 850
Score = 31.6 bits (70), Expect = 0.48
Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 19/160 (11%)
Query: 49 GRPTGLRVAGEAAET------DSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAP 102
G P GL A E + P+P E A P P Q + G E P
Sbjct: 1323 GFPVGLGKAHSTTERWACLGEGTTPKPRTECQAHPGPSSPCAQQLPVSSLFQGPENLQPP 1382
Query: 103 APARSLLQLRLAESQARLDHDVAAAVS--------GVYRRAGRDVAALASRLAAAQAAGL 154
P ++ + + A L D AVS R + R L +A +
Sbjct: 1383 PPEKTPNPMECTKPGAALSQDSEPAVSLEQCEQLVAELRGSVRQAVRLYHSVAGCKMPSA 1442
Query: 155 AAAHSVRLARGDLCALAERLDIVAGCRLLPDIRGVPGTEP 194
+ +L R ++ + L+ VAG + PG+ P
Sbjct: 1443 EQSRIAQLLRDTFSSVRQELEAVAGA-----VLSSPGSSP 1477
>gi|190684677 mitogen-activated protein kinase binding protein 1
isoform b [Homo sapiens]
Length = 1514
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 44 SGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPA 103
SGP R + + G A +DS+ E E E T +LP L V +S ++A + P+PA
Sbjct: 766 SGPNRHQAPSMLSPGPALSSDSDKEGEDEGT--EEELPALPVLAKSTKKALAS--VPSPA 821
Query: 104 PARSLLQLRLAESQARLDH-DVAAAVSGVYRRAGR 137
RSL ++ +Q + D A A + RR GR
Sbjct: 822 LPRSLSHWEMSRAQESVGFLDPAPAANPGPRRRGR 856
Score = 31.6 bits (70), Expect = 0.48
Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 19/160 (11%)
Query: 49 GRPTGLRVAGEAAET------DSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAP 102
G P GL A E + P+P E A P P Q + G E P
Sbjct: 1329 GFPVGLGKAHSTTERWACLGEGTTPKPRTECQAHPGPSSPCAQQLPVSSLFQGPENLQPP 1388
Query: 103 APARSLLQLRLAESQARLDHDVAAAVS--------GVYRRAGRDVAALASRLAAAQAAGL 154
P ++ + + A L D AVS R + R L +A +
Sbjct: 1389 PPEKTPNPMECTKPGAALSQDSEPAVSLEQCEQLVAELRGSVRQAVRLYHSVAGCKMPSA 1448
Query: 155 AAAHSVRLARGDLCALAERLDIVAGCRLLPDIRGVPGTEP 194
+ +L R ++ + L+ VAG + PG+ P
Sbjct: 1449 EQSRIAQLLRDTFSSVRQELEAVAGA-----VLSSPGSSP 1483
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 8/168 (4%)
Query: 19 PGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPR 78
PGE + A Y G +G G T AAE P P P P
Sbjct: 179 PGELAPAAAAPEAPVYANLSSYAGGAGGAGGAAT----VAFAAEPVPFPPPPPPGALGPP 234
Query: 79 DLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARLDHDVAAAVSGVYRRAGRD 138
L L + ++ + E+P +P Q R+ + RL + +AA S +R
Sbjct: 235 RLAALKDEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIAA--SKCRKRKLER 292
Query: 139 VAALASRLAAAQAAGLAAAHSVRLARGDLCALAERL--DIVAGCRLLP 184
++ L ++ ++ A + L R + L +++ + +GC+LLP
Sbjct: 293 ISRLEEKVKTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLP 340
>gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform a
[Homo sapiens]
Length = 1005
Score = 38.1 bits (87), Expect = 0.005
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 3 SQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAE 62
S G +R+ E V ++T SE S+SSSE EE +G P G E E
Sbjct: 715 SPGSGPGEIRKVEPVTQKDSTSLSSESSSSSSESEEEDVGEYRPHHRVTEG--TIREEQE 772
Query: 63 TDSEPEPEPEPTAAPRDLPPLVVQRESA 90
+ E E EP P A VV+RE A
Sbjct: 773 YEEEVEEEPRPAAK-------VVEREEA 793
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 14 PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEP 73
PE P EAT + + E GP P G P GL GE A EPE +P
Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEP--GEPAGLGELGEPAGP-GEPEGPGDP 98
Query: 74 TAAPRDLPPLVVQRESAEE 92
AAP + V+ EE
Sbjct: 99 AAAPAEAEEQAVEARQEEE 117
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 14 PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEP 73
PE P EAT + + E GP P G P GL GE A EPE +P
Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEP--GEPAGLGELGEPAGP-GEPEGPGDP 98
Query: 74 TAAPRDLPPLVVQRESAEE 92
AAP + V+ EE
Sbjct: 99 AAAPAEAEEQAVEARQEEE 117
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 14 PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEP 73
PE P EAT + + E GP P G P GL GE A EPE +P
Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEP--GEPAGLGELGEPAGP-GEPEGPGDP 98
Query: 74 TAAPRDLPPLVVQRESAEE 92
AAP + V+ EE
Sbjct: 99 AAAPAEAEEQAVEARQEEE 117
>gi|30089948 protein phosphatase 1E [Homo sapiens]
Length = 755
Score = 37.4 bits (85), Expect = 0.009
Identities = 36/106 (33%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 38 ELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTE 97
EL+LG RG P G G E + EPEPEPEP + P P LV AE A +
Sbjct: 16 ELFLGEF---RG-PCG----GGEPEPEPEPEPEPEPESEPEPEPELV----EAEAAEASV 63
Query: 98 EAPAPAPARSLLQLRLAESQARLDHDVAAAVSGVYRRAGRDVAALA 143
E P A ++ + + + + AAV G G AA A
Sbjct: 64 EEPG-EEAATVAATEEGDQEQDPEPEEEAAVEGEEEEEGAATAAAA 108
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 37.4 bits (85), Expect = 0.009
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 30 SASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRES 89
S SS+EEEL L S G P +A +A +P+P+P P PR +P + E
Sbjct: 195 SFGSSQEEEL-LHHSLTAHGAPER-PLAATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEP 252
Query: 90 AEEAWGTEEAPAPAPA 105
EA P PAPA
Sbjct: 253 EREA-----TPTPAPA 263
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 37.4 bits (85), Expect = 0.009
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 30 SASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRES 89
S SS+EEEL L S G P +A +A +P+P+P P PR +P + E
Sbjct: 195 SFGSSQEEEL-LHHSLTAHGAPER-PLAATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEP 252
Query: 90 AEEAWGTEEAPAPAPA 105
EA P PAPA
Sbjct: 253 EREA-----TPTPAPA 263
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 37.4 bits (85), Expect = 0.009
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 30 SASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRES 89
S SS+EEEL L S G P +A +A +P+P+P P PR +P + E
Sbjct: 195 SFGSSQEEEL-LHHSLTAHGAPER-PLAATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEP 252
Query: 90 AEEAWGTEEAPAPAPA 105
EA P PAPA
Sbjct: 253 EREA-----TPTPAPA 263
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 37.0 bits (84), Expect = 0.011
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 14 PETVVPGEATETDSERSASSSEEEELYLG--PSGPTRGRPTGLRVAGEAAETDSEPEPEP 71
P PG + + S E E +G P+GP G P A +A D + + P
Sbjct: 783 PVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAP 842
Query: 72 EPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSL--LQLRLAESQARLDHDVAAAVS 129
++LP G E+ P P PAR + RLAE DV S
Sbjct: 843 RAAGTVKELPK------------GPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGG-S 889
Query: 130 GVYRRAGRDVAALASRL 146
++ G++VAA + +
Sbjct: 890 QDRKKPGKEVAATGTSI 906
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 37.0 bits (84), Expect = 0.011
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 46 PTRGRPTGLR--VAGEAAETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPA-- 101
P GRP R V A SEP+ P PTA RD P R S + +PA
Sbjct: 160 PGSGRPQRARRPVPNAHAPAPSEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPG 219
Query: 102 --PAPARSLLQLRLAESQA 118
PAPA + L + E +A
Sbjct: 220 SPPAPAPTALATCIPEDRA 238
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 36.6 bits (83), Expect = 0.015
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 14 PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEP 73
PE VP + E E + +EEE P + P AAE +S EP E
Sbjct: 188 PEPEVPADLAEMAREPAEEPAEEELAEEAAEEPAKEEP--------AAEEESAEEPATEE 239
Query: 74 TAAPRDLPPLVVQR--ESAEEAWGTEE 98
AAP ++ ++ E A++A G EE
Sbjct: 240 AAAPEEVTKYQHEKWDEEAQDAAGKEE 266
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 36.6 bits (83), Expect = 0.015
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 4 QGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAET 63
Q + + ++P+ V E TE + S+ E ++ L + P+ G P+ V E+A +
Sbjct: 1594 QQKEKEKDQKPKEVEKQEDTENHPKTPESAPENKDSEL-KTPPSVGPPSVTVVTLESAPS 1652
Query: 64 DSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEA-----PAPAPARSLLQLRLAESQA 118
E + AP LV + ++ E A +EEA PAPAP L Q+ L A
Sbjct: 1653 ALEKTTGDKTVEAP-----LVTEEKTVEPATVSEEAKPASEPAPAPVEQLEQVDLPPG-A 1706
Query: 119 RLDHDVAAAVSGVYRRAGRD 138
D + A +GV + D
Sbjct: 1707 DPDKEAAMMPAGVEEGSSGD 1726
>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 36.2 bits (82), Expect = 0.019
Identities = 49/184 (26%), Positives = 68/184 (36%), Gaps = 16/184 (8%)
Query: 10 PLRR--PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEP 67
PL+R E + P + E +S + L + PT G P R+ + P
Sbjct: 49 PLQRVFKEVITPSASPEQFFRGEEASIAPGKTNLLNTPPTSGNPKHQRLPSHSQIVPPAP 108
Query: 68 EPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARLDHDVAAA 127
P P P + P LPP G+ P LL LR + R + AA
Sbjct: 109 SPLPSPGSVPGYLPP-------TGSPDGSLPRTQPLTQVQLLVLR----EVRFIAEAFAA 157
Query: 128 VSGVYRRAGRDVAALASRLAAAQAAGLAA--AHSVRLARGDLCALAERLDIVAGCRLLPD 185
+ R R AA+A ++ A A LAA A LAR L ER ++ L
Sbjct: 158 ARTLVRLVARVDAAVADQVGALDKA-LAALDARVGLLARVRALVLRERGEVAEALLALAT 216
Query: 186 IRGV 189
G+
Sbjct: 217 AEGL 220
>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 36.2 bits (82), Expect = 0.019
Identities = 49/184 (26%), Positives = 68/184 (36%), Gaps = 16/184 (8%)
Query: 10 PLRR--PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEP 67
PL+R E + P + E +S + L + PT G P R+ + P
Sbjct: 49 PLQRVFKEVITPSASPEQFFRGEEASIAPGKTNLLNTPPTSGNPKHQRLPSHSQIVPPAP 108
Query: 68 EPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARLDHDVAAA 127
P P P + P LPP G+ P LL LR + R + AA
Sbjct: 109 SPLPSPGSVPGYLPP-------TGSPDGSLPRTQPLTQVQLLVLR----EVRFIAEAFAA 157
Query: 128 VSGVYRRAGRDVAALASRLAAAQAAGLAA--AHSVRLARGDLCALAERLDIVAGCRLLPD 185
+ R R AA+A ++ A A LAA A LAR L ER ++ L
Sbjct: 158 ARTLVRLVARVDAAVADQVGALDKA-LAALDARVGLLARVRALVLRERGEVAEALLALAT 216
Query: 186 IRGV 189
G+
Sbjct: 217 AEGL 220
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 36.2 bits (82), Expect = 0.019
Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 38/139 (27%)
Query: 7 RRRPLRRPETVVPG-------EATETDSERSASSSEEEELYLGPSGPTRG-RPTGL---- 54
R+ + RP+ V G + E+D+E EE E P+GP G P GL
Sbjct: 165 RQPRIPRPQHKVRGYRYLEEDNSDESDAEGDLGDGEEAEAEAPPAGPRPGPEPAGLGRRP 224
Query: 55 ----RVAGEAAETDSE--PEPEPEPTAAP--------------------RDLPPLVVQRE 88
+ G SE P P +P ++P R L PL +
Sbjct: 225 CPYEQAQGAMGRRSSEGPPGPRTQPPSSPASVYHVLGRGDPLRVPRCLQRPLSPLPHVGD 284
Query: 89 SAEEAWGTEEAPAPAPARS 107
+ AW T P P P RS
Sbjct: 285 APPRAWVTSGLPQPPPRRS 303
>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 36.2 bits (82), Expect = 0.019
Identities = 49/184 (26%), Positives = 68/184 (36%), Gaps = 16/184 (8%)
Query: 10 PLRR--PETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEP 67
PL+R E + P + E +S + L + PT G P R+ + P
Sbjct: 49 PLQRVFKEVITPSASPEQFFRGEEASIAPGKTNLLNTPPTSGNPKHQRLPSHSQIVPPAP 108
Query: 68 EPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARLDHDVAAA 127
P P P + P LPP G+ P LL LR + R + AA
Sbjct: 109 SPLPSPGSVPGYLPP-------TGSPDGSLPRTQPLTQVQLLVLR----EVRFIAEAFAA 157
Query: 128 VSGVYRRAGRDVAALASRLAAAQAAGLAA--AHSVRLARGDLCALAERLDIVAGCRLLPD 185
+ R R AA+A ++ A A LAA A LAR L ER ++ L
Sbjct: 158 ARTLVRLVARVDAAVADQVGALDKA-LAALDARVGLLARVRALVLRERGEVAEALLALAT 216
Query: 186 IRGV 189
G+
Sbjct: 217 AEGL 220
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 36.2 bits (82), Expect = 0.019
Identities = 43/161 (26%), Positives = 58/161 (36%), Gaps = 39/161 (24%)
Query: 7 RRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGE------- 59
R RP R E P +A P+ P R +A E
Sbjct: 1539 RERPQGRKEAPAPSKAA-------------------PAAPPPARTQPSLIADETPPCYSL 1579
Query: 60 --AAETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQ 117
+A + SEPEP P PR P V + G + +P+P A LLQ ++ +
Sbjct: 1580 SSSASSLSEPEPSEPPAVHPRGREPAVT--KDPGPGGGRDSSPSPRAAEELLQRCISSAL 1637
Query: 118 ARLDHDVAAAVSGVYRRAGR-----DVAALASRLAAAQAAG 153
R VSG+ RR R + A SR +AAG
Sbjct: 1638 PRR----RPPVSGLRRRKPRATRLDERPAEGSRERGEEAAG 1674
Score = 27.7 bits (60), Expect = 6.9
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 12 RRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLR----VAGEAAETDSEP 67
RRPE + S RS + E+ G T G P LR + + ++P
Sbjct: 1749 RRPEKRGAASVKTSGSPRSPAGPEKPR---GTQKTTPGVPAVLRGRTVIYVPSPAPRAQP 1805
Query: 68 EPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARS 107
+ P P A PR + P + + +A + P+P RS
Sbjct: 1806 KGTPGPRATPRKVAPPCLAQPAA-----PAKVPSPGQQRS 1840
>gi|109826351 melanophilin isoform 2 [Homo sapiens]
Length = 572
Score = 36.2 bits (82), Expect = 0.019
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 21/193 (10%)
Query: 6 RRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDS 65
RR R + + G TE D E A + EEL S + E D
Sbjct: 331 RRGRASSESQGLGAGVRTEADVEEEALRRKLEELTSNVSDQETS-------SEEEEAKDE 383
Query: 66 EPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARLDHDVA 125
+ EP + + P LP + +A +E P + R + + D
Sbjct: 384 KAEPNRDKSVGP--LPQADPEVGTAAHQTNRQEKSPQDPGDPVQYNRTTDEELSELEDRV 441
Query: 126 AAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGCRLLPD 185
A + ++A +V+ + SR+AA +AAGL S + R + LP
Sbjct: 442 AVTASEVQQAESEVSDIESRIAALRAAGLTVKPSGKPRRKSNLPI-----------FLPR 490
Query: 186 IRGVPGTEPEKDP 198
+ G G PE DP
Sbjct: 491 VAGKLGKRPE-DP 502
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 35.8 bits (81), Expect = 0.025
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 4 QGRRRRPLRRPETVVPGEATETDSERSASSSE-EEELYLGPSGPTRGRPTGLRVAGEAAE 62
+ RR L++ E + +++E D+E +S+ +EL L P P + + AGE+ E
Sbjct: 1485 RAERRESLQKQEAIREVDSSEDDTEEGPENSQGAQELSLAPH-PEVSQSVAPKGAGESGE 1543
Query: 63 TDSEPEPEPEPTAAPRDLPPLV 84
D P P+ PR L P+V
Sbjct: 1544 ED------PFPSRDPRSLGPMV 1559
>gi|29826321 adducin 1 (alpha) isoform b [Homo sapiens]
Length = 768
Score = 35.4 bits (80), Expect = 0.033
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 10 PLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA--------A 61
P++ E +VP T DS+ + +L G P L EA A
Sbjct: 646 PIKLEEDLVPEPTTGDDSDAATFKPTLPDLSPDEPSEALGFPM-LEKEEEAHRPPSPTEA 704
Query: 62 ETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLR 112
T++ PEP P+P + P V+ +A + G++ +P +P++ + R
Sbjct: 705 PTEASPEPAPDPAPVAEEAAPSAVEEGAAADP-GSDGSPGKSPSKKKKKFR 754
>gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens]
Length = 737
Score = 35.4 bits (80), Expect = 0.033
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 10 PLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA--------A 61
P++ E +VP T DS+ + +L G P L EA A
Sbjct: 615 PIKLEEDLVPEPTTGDDSDAATFKPTLPDLSPDEPSEALGFPM-LEKEEEAHRPPSPTEA 673
Query: 62 ETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLR 112
T++ PEP P+P + P V+ +A + G++ +P +P++ + R
Sbjct: 674 PTEASPEPAPDPAPVAEEAAPSAVEEGAAADP-GSDGSPGKSPSKKKKKFR 723
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 35.4 bits (80), Expect = 0.033
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 19 PGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEAAETDSEPEPEPEPTAAPR 78
P +++DS+ EE E PSG R TG SEP+P PEP PR
Sbjct: 516 PDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTG----------SSEPQPPPEP---PR 562
Query: 79 DLPPL 83
PPL
Sbjct: 563 SGPPL 567
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,315,073
Number of Sequences: 37866
Number of extensions: 528239
Number of successful extensions: 4301
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 3618
Number of HSP's gapped (non-prelim): 922
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.