Search of human proteins with 4505119

Search of human proteins with 4505119

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]         590   e-169
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...   399   e-111
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi...   148   6e-36
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i...   132   5e-31
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro...    82   7e-16
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa...    80   2e-15
gi|211059437 hypothetical protein LOC284428 [Homo sapiens]             80   3e-15
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ...    79   4e-15
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro...    79   5e-15
gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ...    79   6e-15
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ...    74   2e-13
gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo s...    74   2e-13
gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Ho...    74   2e-13
gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo ...    74   2e-13
gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo...    74   2e-13
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]     55   9e-08
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]       55   9e-08
gi|4505121 methyl-CpG binding domain protein 4 [Homo sapiens]          50   3e-06
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]              40   0.002
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo...    40   0.003
gi|31377846 WD repeat domain 52 [Homo sapiens]                         39   0.004
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro...    39   0.005
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro...    39   0.005
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro...    39   0.005
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     39   0.007
gi|17975763 myelin transcription factor 1 [Homo sapiens]               38   0.009
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]            38   0.009
gi|225735631 mesoderm induction early response 1 isoform g [Homo...    38   0.012
gi|225735617 mesoderm induction early response 1 isoform h [Homo...    38   0.012
gi|225735615 mesoderm induction early response 1 isoform a [Homo...    38   0.012

>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
          Length = 291

 Score =  590 bits (1522), Expect = e-169
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS 60
           MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS
Sbjct: 1   MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS 60

Query: 61  TFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPS 120
           TFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPS
Sbjct: 61  TFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPS 120

Query: 121 NKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSA 180
           NKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSA
Sbjct: 121 NKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSA 180

Query: 181 IASALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLE 240
           IASALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLE
Sbjct: 181 IASALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLE 240

Query: 241 EALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV 291
           EALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV
Sbjct: 241 EALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV 291


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score =  399 bits (1026), Expect = e-111
 Identities = 190/250 (76%), Positives = 224/250 (89%)

Query: 4   KRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFD 63
           KR +CPALP GW++EEV R+SGLSAG  DV+Y+SPSGKKFRSKPQLARYLG ++DLS+FD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207

Query: 64  FRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV 123
           FRTGKM+ SK+ K++QR+R D  NQ KGKPDLNT LP+RQTASIFKQPVTK+TNHPSNKV
Sbjct: 208 FRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV 267

Query: 124 KSDPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIAS 183
           KSDPQ+  +QPRQLFWEK+L GL+A D+ E+++KTM+LPKGLQGVGPG  DETLLSA+AS
Sbjct: 268 KSDPQRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVAS 327

Query: 184 ALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEAL 243
           ALHTS+ PITGQ+SAAVEKNP VWLNT+QPLCKAF+VTDEDIRKQEE VQQVRK+LEEAL
Sbjct: 328 ALHTSSAPITGQVSAAVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEAL 387

Query: 244 MADMLAHVEE 253
           MAD+L+   +
Sbjct: 388 MADILSRAAD 397


>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
           sapiens]
          Length = 194

 Score =  148 bits (373), Expect = 6e-36
 Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 2/193 (1%)

Query: 74  MNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKVKSDP-QKAVD 132
           M KS QR + D  NQ K KP L+T++P+R ++  FK+PVT+IT HP N+V+    +++++
Sbjct: 1   MAKSSQRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLE 60

Query: 133 QPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL-HTSTMP 191
           +P+Q+ W+++L GL A+  A EL  T+DL   LQ + P  T  +LL  +AS L H+  MP
Sbjct: 61  KPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMP 120

Query: 192 ITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALMADMLAHV 251
                S AVE  P   +  +Q LCK F+VT+EDIRKQE  V+ VR+RL  AL+AD LA+ 
Sbjct: 121 HLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANE 180

Query: 252 EELARDGEAPLDK 264
            E  RD E   +K
Sbjct: 181 AEKVRDQEGRPEK 193


>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
           isoform [Homo sapiens]
          Length = 302

 Score =  132 bits (331), Expect = 5e-31
 Identities = 61/87 (70%), Positives = 75/87 (86%)

Query: 4   KRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFD 63
           KR +CPALP GW++EEV R+SGLSAG  DV+Y+SPSGKKFRSKPQLARYLG ++DLS+FD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207

Query: 64  FRTGKMLMSKMNKSRQRVRYDSSNQVK 90
           FRTGKM+ SK+ K++QR+R D  NQ K
Sbjct: 208 FRTGKMMPSKLQKNKQRLRNDPLNQNK 234


>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2, partial [Homo sapiens]
          Length = 193

 Score = 81.6 bits (200), Expect = 7e-16
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 1   GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60

Query: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
              + +++P+QL   +KL  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 61  KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120

Query: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
            +   P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 179

Query: 245 ADMLAHVEELARDG 258
           AD LA   E+   G
Sbjct: 180 ADRLARRAEMLTGG 193


>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
           sapiens]
          Length = 208

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75

Query: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135

Query: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
            +   P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194

Query: 245 ADMLAHVEELARDG 258
           AD LA   E+   G
Sbjct: 195 ADRLARRAEMLTGG 208


>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
          Length = 208

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75

Query: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135

Query: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
                P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194

Query: 245 ADMLAHVEELARDG 258
           AD LA   E+   G
Sbjct: 195 ADRLARQAEMLTGG 208


>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
           3-like [Homo sapiens]
          Length = 208

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 3/190 (1%)

Query: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75

Query: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135

Query: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
            +   P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194

Query: 245 ADMLAHVEEL 254
           AD LA   E+
Sbjct: 195 ADRLARQAEM 204


>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2 [Homo sapiens]
          Length = 204

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 3/190 (1%)

Query: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75

Query: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135

Query: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
            +   P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194

Query: 245 ADMLAHVEEL 254
           AD LA   E+
Sbjct: 195 ADRLARRAEM 204


>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
           4-like [Homo sapiens]
          Length = 208

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 3/190 (1%)

Query: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75

Query: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135

Query: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
                P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194

Query: 245 ADMLAHVEEL 254
           AD LA   E+
Sbjct: 195 ADRLARQAEM 204


>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
          sapiens]
          Length = 586

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 7  ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66
          +CPAL  GW+R EV R+SG + G  D +Y SP+G + RSK +L RYLG + DL+ FDF+ 
Sbjct: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66

Query: 67 G 67
          G
Sbjct: 67 G 67


>gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo
          sapiens]
          Length = 503

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 7  ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66
          +CPAL  GW+R EV R+SG + G  D +Y SP+G + RSK +L RYLG + DL+ FDF+ 
Sbjct: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66

Query: 67 G 67
          G
Sbjct: 67 G 67


>gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1
          [Homo sapiens]
          Length = 556

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 7  ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66
          +CPAL  GW+R EV R+SG + G  D +Y SP+G + RSK +L RYLG + DL+ FDF+ 
Sbjct: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66

Query: 67 G 67
          G
Sbjct: 67 G 67


>gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo
          sapiens]
          Length = 605

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 7  ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66
          +CPAL  GW+R EV R+SG + G  D +Y SP+G + RSK +L RYLG + DL+ FDF+ 
Sbjct: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66

Query: 67 G 67
          G
Sbjct: 67 G 67


>gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo
          sapiens]
          Length = 549

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 7  ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66
          +CPAL  GW+R EV R+SG + G  D +Y SP+G + RSK +L RYLG + DL+ FDF+ 
Sbjct: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66

Query: 67 G 67
          G
Sbjct: 67 G 67


>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
          Length = 498

 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 6   WECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYL----GGSMDLST 61
           ++ P LP+GW R+   R+SG SAG  DV+  +P GK FRSK +L  Y       S+D + 
Sbjct: 107 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPND 166

Query: 62  FDF 64
           FDF
Sbjct: 167 FDF 169


>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
          Length = 486

 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 6   WECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYL----GGSMDLST 61
           ++ P LP+GW R+   R+SG SAG  DV+  +P GK FRSK +L  Y       S+D + 
Sbjct: 95  YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPND 154

Query: 62  FDF 64
           FDF
Sbjct: 155 FDF 157


>gi|4505121 methyl-CpG binding domain protein 4 [Homo sapiens]
          Length = 580

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 7   EC-PALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYL--GGSMDLSTFD 63
           EC  ++P GWER    R  G +AG  DV++ SP G KFRSK  LA YL   G   L   D
Sbjct: 81  ECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPED 140

Query: 64  F 64
           F
Sbjct: 141 F 141


>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
          Length = 587

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 6/65 (9%)

Query: 229 EELVQQVRKRLEEALMADMLAHV-----EELARDGEAPLDKACAEDD-DEEDEEEEEEEP 282
           EE  +Q+++ LE   MA +LA +     EE   +GE   ++A  E++ DEE+EEEEEEE 
Sbjct: 335 EEGCEQLQEVLEGFNMAKVLASLSDDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEE 394

Query: 283 DPDPE 287
           + +P+
Sbjct: 395 EEEPQ 399


>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
           sapiens]
          Length = 2168

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 11  LPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYL--GGSMDLSTFDF 64
           L  GW+RE   R  G      +V YY+P GKK R  P++ +YL   G MD+S  +F
Sbjct: 749 LEYGWQRETRIRNFG-GRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNF 803



 Score = 32.7 bits (73), Expect = 0.39
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 263 DKACAEDDDEEDEEEEEEEPDPDPEME 289
           D   + +D+EED+EEE+EE D D E +
Sbjct: 603 DSEDSNEDEEEDDEEEDEEDDEDDESD 629



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 268 EDDDEEDEEEEEEEPDPDPEME 289
           EDD+EEDEE++E++   D + E
Sbjct: 613 EDDEEEDEEDDEDDESDDSQSE 634



 Score = 28.5 bits (62), Expect = 7.3
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 163 KGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTD 222
           KG+ G   G    +++    S L T+     GQ  +          N  Q   +      
Sbjct: 167 KGVNGSINGSNTSSVIGINTSVLSTTASSSMGQTKSTSSGGGNRKCNQEQSKNQPLDARV 226

Query: 223 EDIRKQEELVQQVRKRLEEALMADMLAHVE-ELARDGEAPLDKACAEDDDEEDEEEEEEE 281
           + I+ ++      +K +E +  +D  +    + + +G +  D    E+D+EE+++  EE 
Sbjct: 227 DKIKDKKPR----KKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDEEEEDQSIEES 282

Query: 282 PDPDPEME 289
            D D + E
Sbjct: 283 EDDDSDSE 290



 Score = 28.5 bits (62), Expect = 7.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 257 DGEAPLDKACAEDDDEEDEEEEEEEPDPDPEME 289
           D + P  K   + +++E+E++EEE+ + D + E
Sbjct: 595 DSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDE 627


>gi|31377846 WD repeat domain 52 [Homo sapiens]
          Length = 982

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 219 MVTDEDIRKQEELVQQVRKRLEEALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEE 278
           ++  E   +Q EL +++R+     L A+M         DGE    K   E+++E++EEEE
Sbjct: 686 LIEIEKRERQRELKEKIREERRNKLAAEM-------GEDGE----KEFQEEEEEKEEEEE 734

Query: 279 EEEPDPD 285
           EEEP P+
Sbjct: 735 EEEPLPE 741


>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform a [Homo sapiens]
          Length = 482

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 246 DMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEH 290
           DM  + +E+  D E  LD+   E +DE +EE+EE +P P+P  E+
Sbjct: 129 DMFRYEDEVFGDSEPELDE---ESEDEVEEEQEERQPSPEPVQEN 170


>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform a [Homo sapiens]
          Length = 482

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 246 DMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEH 290
           DM  + +E+  D E  LD+   E +DE +EE+EE +P P+P  E+
Sbjct: 129 DMFRYEDEVFGDSEPELDE---ESEDEVEEEQEERQPSPEPVQEN 170


>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform b [Homo sapiens]
          Length = 449

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 246 DMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEH 290
           DM  + +E+  D E  LD+   E +DE +EE+EE +P P+P  E+
Sbjct: 129 DMFRYEDEVFGDSEPELDE---ESEDEVEEEQEERQPSPEPVQEN 170


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 222 DEDIRKQEELVQQVRKRLEEALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEE 281
           +E+++K+EE+ ++  K  EE          EE+    E   +    ED+DE+  ++ E E
Sbjct: 378 EEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGE 437

Query: 282 PDPDPEME 289
           P  DP  E
Sbjct: 438 PQQDPGTE 445



 Score = 28.1 bits (61), Expect = 9.5
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 222 DEDIRKQEELVQQVRKRLEEALMAD-MLAHVEELARDGEAPLDKACAEDDDEEDEEEEEE 280
           DE+   ++E  +  R RL        M A  +E+    E  + K       EE EEEEEE
Sbjct: 340 DEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEE 399

Query: 281 EPDPDPEMEHV 291
           E     E E +
Sbjct: 400 EMKQKEEEEEI 410


>gi|17975763 myelin transcription factor 1 [Homo sapiens]
          Length = 1121

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 146 LNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSAAVEKNPG 205
           LN   IAEE +   DL +  +  GPG       +A  +A       +  Q   A E+   
Sbjct: 169 LNLGQIAEETLVEEDLGQAAKP-GPGIVHLLQEAAEGAASEEGEKGLFIQPEDA-EEVVE 226

Query: 206 VWLNTTQPLCKAFM--VTDEDIRKQEELVQQVRKRLEEALMADMLAHVEELARDGEAPLD 263
           V    +Q LC   +     E+  KQ+ ++    +  EE    +     EE   + E   +
Sbjct: 227 VTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEE 286

Query: 264 KACAEDDDEEDEEEEEEEPDPDPEM 288
           +   E+++EE+EEEEEEE +  P++
Sbjct: 287 EEEEEEEEEEEEEEEEEEEEAAPDV 311


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 19/67 (28%), Positives = 38/67 (56%)

Query: 223 EDIRKQEELVQQVRKRLEEALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEP 282
           +D +  E+   +++++ E+ + A       E A+ G    +K+  + ++EEDEE+EE+E 
Sbjct: 139 DDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEE 198

Query: 283 DPDPEME 289
           + D E E
Sbjct: 199 EEDEEDE 205


>gi|225735631 mesoderm induction early response 1 isoform g [Homo
           sapiens]
          Length = 470

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 14/62 (22%)

Query: 240 EEALM---ADMLAHVEELARDGEAPLDKACA-----------EDDDEEDEEEEEEEPDPD 285
           EE +M    +  + +E+LAR+G+ P+ +  +           E+D+EE+EEEEE E D D
Sbjct: 58  EEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDED 117

Query: 286 PE 287
            +
Sbjct: 118 AD 119


>gi|225735617 mesoderm induction early response 1 isoform h [Homo
           sapiens]
          Length = 485

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 14/62 (22%)

Query: 240 EEALM---ADMLAHVEELARDGEAPLDKACA-----------EDDDEEDEEEEEEEPDPD 285
           EE +M    +  + +E+LAR+G+ P+ +  +           E+D+EE+EEEEE E D D
Sbjct: 14  EEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDED 73

Query: 286 PE 287
            +
Sbjct: 74  AD 75


>gi|225735615 mesoderm induction early response 1 isoform a [Homo
           sapiens]
          Length = 529

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 14/62 (22%)

Query: 240 EEALM---ADMLAHVEELARDGEAPLDKACA-----------EDDDEEDEEEEEEEPDPD 285
           EE +M    +  + +E+LAR+G+ P+ +  +           E+D+EE+EEEEE E D D
Sbjct: 58  EEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDED 117

Query: 286 PE 287
            +
Sbjct: 118 AD 119


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,419,760
Number of Sequences: 37866
Number of extensions: 588745
Number of successful extensions: 12804
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 6798
Number of HSP's gapped (non-prelim): 3235
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.