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Search of human proteins with 4504431
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504431 high mobility group AT-hook 2 isoform a [Homo
sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 224 2e-59
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 175 8e-45
gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens] 85 1e-17
gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens] 85 1e-17
gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens] 85 1e-17
gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens] 85 1e-17
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens] 83 4e-17
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens] 83 4e-17
gi|239753198 PREDICTED: hypothetical protein [Homo sapiens] 76 5e-15
gi|239747772 PREDICTED: hypothetical protein [Homo sapiens] 76 5e-15
gi|239741638 PREDICTED: hypothetical protein [Homo sapiens] 76 5e-15
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 45 2e-05
gi|145199237 transcription elongation factor B polypeptide 3 bin... 42 8e-05
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 42 1e-04
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 42 1e-04
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 42 1e-04
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 41 2e-04
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 40 3e-04
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 40 3e-04
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 40 3e-04
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 40 3e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 40 3e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 40 4e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 40 4e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 40 5e-04
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 40 5e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 40 5e-04
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 224 bits (570), Expect = 2e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
Query: 61 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
Sbjct: 61 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]
Length = 106
Score = 175 bits (443), Expect = 8e-45
Identities = 85/105 (80%), Positives = 92/105 (87%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
Query: 61 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQES 105
SKAAQKKAEATGEKRPRGRPRKW + + ++ + S++ S
Sbjct: 61 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRS 105
>gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 85.1 bits (209), Expect = 1e-17
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K +K T ++PRGRP+K ++E EE SQES+EE+
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEEE 95
>gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 85.1 bits (209), Expect = 1e-17
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K +K T ++PRGRP+K ++E EE SQES+EE+
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEEE 95
>gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 85.1 bits (209), Expect = 1e-17
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K +K T ++PRGRP+K ++E EE SQES+EE+
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEEE 95
>gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 85.1 bits (209), Expect = 1e-17
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K +K T ++PRGRP+K ++E EE SQES+EE+
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEEE 95
>gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 83.2 bits (204), Expect = 4e-17
Identities = 52/121 (42%), Positives = 67/121 (55%), Gaps = 27/121 (22%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQ------------QQEPTGEPSPKRP 48
MS + QP S Q + +KRGRGRPRKQ Q+EP+ P+PKRP
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEE 108
RGRPKGSKNK +K +K T ++PRGRP+K ++E EE SQES+EE
Sbjct: 58 RGRPKGSKNKGAAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEE 105
Query: 109 D 109
+
Sbjct: 106 E 106
>gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 83.2 bits (204), Expect = 4e-17
Identities = 52/121 (42%), Positives = 67/121 (55%), Gaps = 27/121 (22%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQ------------QQEPTGEPSPKRP 48
MS + QP S Q + +KRGRGRPRKQ Q+EP+ P+PKRP
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEE 108
RGRPKGSKNK +K +K T ++PRGRP+K ++E EE SQES+EE
Sbjct: 58 RGRPKGSKNKGAAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEE 105
Query: 109 D 109
+
Sbjct: 106 E 106
>gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 76.3 bits (186), Expect = 5e-15
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K K T ++PRGRP+K ++E E+ SQES+ E+
Sbjct: 58 AAKTG--KTTTTLGRKPRGRPKK----------LEKEEEKGISQESSLEE 95
>gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 76.3 bits (186), Expect = 5e-15
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K K T ++PRGRP+K ++E E+ SQES+ E+
Sbjct: 58 AAKTG--KTTTTLGRKPRGRPKK----------LEKEEEKGISQESSLEE 95
>gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 76.3 bits (186), Expect = 5e-15
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
+K K T ++PRGRP+K ++E E+ SQES+ E+
Sbjct: 58 AAKTG--KTTTTLGRKPRGRPKK----------LEKEEEKGISQESSLEE 95
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 44.7 bits (104), Expect = 2e-05
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
Q + +G+ A A +RG PR Q+ +P P P G+ +G + PS A ++
Sbjct: 274 QDCSQLRGEGPARAGSRRG---PRSHQKL---QPPPLLPDGKGRGGQASRPSVAPATGSK 327
Query: 70 ATGEKRPRGRPRKW----PQQVVQKKPAQEETEETSSQE 104
A G++R GR R+W ++ ++ + + T ET S+E
Sbjct: 328 ARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEE 366
Score = 26.2 bits (56), Expect = 6.0
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE------------PSPKRP 48
+S G G P S P Q+ P +Q+P G P P+R
Sbjct: 422 LSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRG 481
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQ 86
G P+ +++S AQ+ PR RP + Q
Sbjct: 482 AGLPEPGEDRSGKSGAQQGL------APRSRPTRGGSQ 513
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 42.4 bits (98), Expect = 8e-05
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 33/134 (24%)
Query: 9 GQPSTSAQGQPAAPA----------PQKRGRGRPRKQQQEPTGEP---SPKRPRGRPKGS 55
G+P G P AP+ + +GRGRP ++ + P SP+R RP+G+
Sbjct: 374 GKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADKKGPQASSPRRKAERPEGT 433
Query: 56 KNK-------------SPSKAAQKKAEATGEKRP---RG--RPRKWPQQVVQKKPAQE-- 95
K K P + A++ + +G+ RP RG RP + P + K P+ +
Sbjct: 434 KKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLPDRKSTKAPSGKLV 493
Query: 96 ETEETSSQESAEED 109
E + S E A +D
Sbjct: 494 ERKARSLDEGASQD 507
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEP---TGEPSPKRPRGRPK------GSKNK 58
A +P + + +A G+GRP + + P +G+ P RG P+ K
Sbjct: 427 AERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLPDRKSTK 486
Query: 59 SPS-KAAQKKAEATGEKRPRGRPR 81
+PS K ++KA + E + P+
Sbjct: 487 APSGKLVERKARSLDEGASQDAPK 510
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 42.0 bits (97), Expect = 1e-04
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 23 APQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
A + R R R++++ +G SPK+PR PK ++SPS KK + + + R R +
Sbjct: 333 ARRSRSASRERRRRRSRSGTRSPKKPRS-PKRKLSRSPSPRRHKKEKKKDKDKERSRDER 391
Query: 83 WPQQVVQKKPAQEETEETSSQESAEE 108
+KK +E + ES ++
Sbjct: 392 ERSTSKKKKSKDKEKDRERKSESDKD 417
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 3 ARGEGAGQPSTS-AQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
+R G STS + + +KR + P+ + + R R S +SP
Sbjct: 297 SRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPK 356
Query: 62 KAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
K K + + PR R +K ++ K+ +++E E ++S++ +D
Sbjct: 357 KPRSPKRKLSRSPSPR-RHKKEKKKDKDKERSRDERERSTSKKKKSKD 403
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 41.6 bits (96), Expect = 1e-04
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 7 GAGQPSTSAQGQPA-APAPQKRGRGRPRKQQQEPTGE---------PSPKRPRGRP---K 53
G QP QG P A +PQ + G P +Q+ P G+ P +R G P +
Sbjct: 429 GQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSR 488
Query: 54 GSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQ-KKPAQEETEETSSQ 103
S SP++A++ A + RP + R QQ + KKPA SQ
Sbjct: 489 ASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHPHLNKSQ 539
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
+S G+ S G A P+ +GR QQ E + +P+P P NKS
Sbjct: 486 LSRASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHPH------LNKSQ 539
Query: 61 SKAAQKKAEATGEKRPRGRP 80
S + +T + RG P
Sbjct: 540 SLT---NSLSTSDTSQRGTP 556
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 41.6 bits (96), Expect = 1e-04
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 7 GAGQPSTSAQGQPA-APAPQKRGRGRPRKQQQEPTGE---------PSPKRPRGRP---K 53
G QP QG P A +PQ + G P +Q+ P G+ P +R G P +
Sbjct: 430 GQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSR 489
Query: 54 GSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQ-KKPAQEETEETSSQ 103
S SP++A++ A + RP + R QQ + KKPA SQ
Sbjct: 490 ASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHPHLNKSQ 540
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
+S G+ S G A P+ +GR QQ E + +P+P P NKS
Sbjct: 487 LSRASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHPH------LNKSQ 540
Query: 61 SKAAQKKAEATGEKRPRGRP 80
S + +T + RG P
Sbjct: 541 SLT---NSLSTSDTSQRGTP 557
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 40.8 bits (94), Expect = 2e-04
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67
A P+ +G+ A PA G ++E G + K+P SPSKA +KK
Sbjct: 353 AATPTKGPEGKVAGPADAPMDSGA----EEEKAGAATVKKP----------SPSKARKKK 398
Query: 68 AEATGEK---RPRGRPRKWPQQVVQKKPAQEET 97
G K R RGRP+K ++KP + +T
Sbjct: 399 LNKKGRKMAGRKRGRPKKMNTANPERKPKKNQT 431
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67
A S + + + A +K + RK++ G R RGRPK +P + +K
Sbjct: 370 APMDSGAEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKMNTANPERKPKKN 429
Query: 68 AEA 70
A
Sbjct: 430 QTA 432
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 40.4 bits (93), Expect = 3e-04
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 16 QGQPAAPA---PQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATG 72
+G+PAA P+ RGR + KQ + + + + KG + K P K +K E
Sbjct: 180 RGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
Query: 73 EK-RPRGRP--RKWPQQVVQKKPAQEETEETSSQESAEE 108
E+ +PR P ++ ++V K+ +T TS+ +S EE
Sbjct: 240 EEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEE 278
Score = 28.9 bits (63), Expect = 0.93
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
GQ + QP ++ +PRK+ + G+ + R + S S + ++
Sbjct: 221 GQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGD 280
Query: 69 EATGEKRPRGRPR------------KWPQQVVQKKPAQEETEETSSQESAE 107
+ GEK+ +G + ++ +K QEE ET Q E
Sbjct: 281 DQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQNKDE 331
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 40.4 bits (93), Expect = 3e-04
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 16 QGQPAAPA---PQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATG 72
+G+PAA P+ RGR + KQ + + + + KG + K P K +K E
Sbjct: 180 RGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
Query: 73 EK-RPRGRP--RKWPQQVVQKKPAQEETEETSSQESAEE 108
E+ +PR P ++ ++V K+ +T TS+ +S EE
Sbjct: 240 EEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEE 278
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
GQ + QP ++ +PRK+ + G+ + R + S S + ++
Sbjct: 221 GQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGD 280
Query: 69 EATGEKRPRGRPR------------KWPQQVVQKKPAQEETEETSSQ 103
+ GEK+ +G + ++ +K QEE ET Q
Sbjct: 281 DQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEHQ 327
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 40.4 bits (93), Expect = 3e-04
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 16 QGQPAAPA---PQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATG 72
+G+PAA P+ RGR + KQ + + + + KG + K P K +K E
Sbjct: 180 RGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
Query: 73 EK-RPRGRP--RKWPQQVVQKKPAQEETEETSSQESAEE 108
E+ +PR P ++ ++V K+ +T TS+ +S EE
Sbjct: 240 EEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEE 278
Score = 28.9 bits (63), Expect = 0.93
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
GQ + QP ++ +PRK+ + G+ + R + S S + ++
Sbjct: 221 GQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGD 280
Query: 69 EATGEKRPRGRPR------------KWPQQVVQKKPAQEETEETSSQESAE 107
+ GEK+ +G + ++ +K QEE ET Q E
Sbjct: 281 DQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQNKDE 331
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 40.4 bits (93), Expect = 3e-04
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 3 ARGEGAGQPSTSAQGQPAA-----PAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKN 57
+RG G +T Q PAA P P +R RG PR EP P P RP +
Sbjct: 273 SRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPR--PAEPRAPPRPPPAARRPPPATA 330
Query: 58 KSPSKAAQKKAEATGEKRPRGR 79
SP +A + T E+ PR R
Sbjct: 331 PSPRRAG---SPPTREEEPRPR 349
Score = 33.1 bits (74), Expect = 0.049
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQK 66
QP+ ++G+P P+ R P ++ P PSP+R P + P ++A +
Sbjct: 298 QPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPSPRRAGSPPTREEEPRPRRSAAR 354
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPR 49
+P +A+ P A AP R G P +++EP S RP+
Sbjct: 317 RPPPAARRPPPATAPSPRRAGSPPTREEEPRPRRSAARPQ 356
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.4 bits (93), Expect = 3e-04
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 1 MSARGEGAGQP-------STSAQGQPAAPA-PQKRGRGRPRK---------QQQEPTGEP 43
+S G AG P TSA QPA+ A P +G+GR + P P
Sbjct: 493 LSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASP 552
Query: 44 SPKRPRGRPKGSKNKSPSKAAQKKAEAT--GEKRPRGRPRKWP------QQVVQKKPAQE 95
SP+R G P+ ++ S S A KA G ++ +G P+K P +Q Q P
Sbjct: 553 SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612
Query: 96 ETEETSSQ 103
T+ Q
Sbjct: 613 TGPPTTQQ 620
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNK-SPS 61
+R G + A PA+P+PQ++ G P+ +Q P+P + G P G + + P
Sbjct: 533 SRPVAGGPGAPPAARPPASPSPQRQA-GPPQATRQTSVSGPAPPKASGAPPGGQQRQGPP 591
Query: 62 KAAQKKAEATGEKRPRGR-PRKWPQQVVQKKPA 93
+ A T + G PR P Q +P+
Sbjct: 592 QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS 624
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 8 AGQPSTSA---QGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK---RPRGRPKGSKNKSPS 61
AG P+ QG P P P + +G P +Q+ P G+ P G P + SP+
Sbjct: 453 AGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPT 512
Query: 62 KAAQKKA-EATGEKRPRGR 79
A Q+ A +A + +GR
Sbjct: 513 SAPQQPASQAAPPTQGQGR 531
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
G + Q A P P+ G P QQ P+G P GRPK + PS+ A
Sbjct: 596 GPAGPTRQASQAGPVPRT---GPPTTQQPRPSGPG----PAGRPKPQLAQKPSQDVPPPA 648
Query: 69 EATGEKRPRGRPRK 82
A P + K
Sbjct: 649 TAAAGGPPHPQLNK 662
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 11 PSTSAQGQPAAPAPQKRGR-------GRPRKQQQEPTGEPSPKRPRGRPKGSK-NKSPSK 62
P + GQ +P GR G P +Q+ P G P P + +G + P
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPP 487
Query: 63 AAQKKAEATGEKRPRGRPRKWPQQV-VQKKPAQEETEETSSQ 103
Q+ G P++ P ++PA + T Q
Sbjct: 488 QGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQ 529
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 11 PSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
P T+ Q +P+ P P R + + ++ + P+ G P NKS S
Sbjct: 615 PPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQS 665
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.4 bits (93), Expect = 3e-04
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 1 MSARGEGAGQP-------STSAQGQPAAPA-PQKRGRGRPRK---------QQQEPTGEP 43
+S G AG P TSA QPA+ A P +G+GR + P P
Sbjct: 493 LSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASP 552
Query: 44 SPKRPRGRPKGSKNKSPSKAAQKKAEAT--GEKRPRGRPRKWP------QQVVQKKPAQE 95
SP+R G P+ ++ S S A KA G ++ +G P+K P +Q Q P
Sbjct: 553 SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612
Query: 96 ETEETSSQ 103
T+ Q
Sbjct: 613 TGPPTTQQ 620
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNK-SPS 61
+R G + A PA+P+PQ++ G P+ +Q P+P + G P G + + P
Sbjct: 533 SRPVAGGPGAPPAARPPASPSPQRQA-GPPQATRQTSVSGPAPPKASGAPPGGQQRQGPP 591
Query: 62 KAAQKKAEATGEKRPRGR-PRKWPQQVVQKKPA 93
+ A T + G PR P Q +P+
Sbjct: 592 QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS 624
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 8 AGQPSTSA---QGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK---RPRGRPKGSKNKSPS 61
AG P+ QG P P P + +G P +Q+ P G+ P G P + SP+
Sbjct: 453 AGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPT 512
Query: 62 KAAQKKA-EATGEKRPRGR 79
A Q+ A +A + +GR
Sbjct: 513 SAPQQPASQAAPPTQGQGR 531
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
G + Q A P P+ G P QQ P+G P GRPK + PS+ A
Sbjct: 596 GPAGPTRQASQAGPVPRT---GPPTTQQPRPSGPG----PAGRPKPQLAQKPSQDVPPPA 648
Query: 69 EATGEKRPRGRPRKWPQQ 86
A P + + P Q
Sbjct: 649 TAAAGGPPHPQLKASPAQ 666
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 11 PSTSAQGQPAAPAPQKRGR-------GRPRKQQQEPTGEPSPKRPRGRPKGSK-NKSPSK 62
P + GQ +P GR G P +Q+ P G P P + +G + P
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPP 487
Query: 63 AAQKKAEATGEKRPRGRPRKWPQQV-VQKKPAQEETEETSSQ 103
Q+ G P++ P ++PA + T Q
Sbjct: 488 QGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQ 529
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 11 PSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA 63
P T+ Q +P+ P P R + + ++ + P+ G P SP++A
Sbjct: 615 PPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQA 667
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 40.0 bits (92), Expect = 4e-04
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
M ARG G G+P S A PAP P QQ+P P P P G P + + P
Sbjct: 1 MDARG-GGGRPGESPG---ATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG-PGPAPPQHP 55
Query: 61 SKAAQKKAEATGEKRPRGRPR 81
+A EA E PRGR R
Sbjct: 56 PRAEALPPEAADEGGPRGRLR 76
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 14 SAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQK------- 66
S+ G+P P +G P + + SP P G +G K + A
Sbjct: 80 SSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPG 139
Query: 67 KAEATG--EKRPRGRPRKWPQQVVQKK 91
AE G E P G PR +Q++
Sbjct: 140 PAEEAGSEEAGPAGEPRGSQASFMQRQ 166
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 40.0 bits (92), Expect = 4e-04
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S G+ G P P P + +G P + +P G P P +P+G P+G K++SP
Sbjct: 52 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSP 111
Query: 61 SKAAQKKA--------EATGEKRPRGRPRKWPQQ 86
K + G P G+P+ P Q
Sbjct: 112 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 145
Score = 39.3 bits (90), Expect = 7e-04
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P NKS S
Sbjct: 113 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRS 172
Query: 62 KAA----------QKKAEATGEKRPRGRPRKWPQQ 86
+ Q + G P G+P+ P Q
Sbjct: 173 SRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 207
Score = 39.3 bits (90), Expect = 7e-04
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P NKS S
Sbjct: 175 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQS 234
Query: 62 KAA----------QKKAEATGEKRPRGRPRKWPQQ 86
+ Q + G P G+P+ P Q
Sbjct: 235 ARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 269
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P +KS S
Sbjct: 299 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 358
Query: 62 KAAQKKAEATGEKRPRGRPRKWPQQ 86
+ P G+P+ PQQ
Sbjct: 359 -----------ARSPPGKPQGPPQQ 372
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 22/105 (20%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQK------------RGRGRPRKQQQEPTGEPSPKRPRGR 51
+G+ Q + S G+P P PQ + +G P + +P G P P +P+G
Sbjct: 227 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 286
Query: 52 PK--GSKNKS----PSK----AAQKKAEATGEKRPRGRPRKWPQQ 86
P GSK++S P K Q + G P G+P+ P Q
Sbjct: 287 PPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 331
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPS------PKRPRGRPKGSKN 57
+G+ + S S G+P P PQ G + P G+P +P+G P K
Sbjct: 165 QGDNKSRSSRSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 221
Query: 58 KSPSKAAQKKAEATGEKRPRGRPRKWPQQ 86
+ P K+++ + P G+P+ P Q
Sbjct: 222 QGPPPQGDNKSQSA--RSPPGKPQGPPPQ 248
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK-RPRGRPKGSKNK----- 58
G G P P+P + +G P + +P G P P +P+G P NK
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 93
Query: 59 SPSKAAQKKAEATGEKRPRGRPRK 82
P K + + PR P K
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGK 117
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 6 EGAGQPS--TSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA 63
+G QP G+P P PQ G + Q P G+P P+G K +SP
Sbjct: 310 QGGNQPQGPPPPPGKPQGPPPQ----GGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK 365
Query: 64 AQKKAEATGEKRPRGRP 80
Q + G P+G P
Sbjct: 366 PQGPPQQEG-NNPQGPP 381
Score = 32.3 bits (72), Expect = 0.084
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK-RPRGRPKGSKNK----- 58
G+ G P +A +P + +G P + +P G P P +P+G P NK
Sbjct: 219 GKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 278
Query: 59 SPSK----AAQKKAEATGEKRPRGRPRKWPQQ 86
P K Q +++ + P G+P+ P Q
Sbjct: 279 PPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQ 310
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 17 GQPAAPAPQKRGRGRP-RKQQQEPTGEPSPK--RPRGRPKGSKNKSPSKAAQKKAEATGE 73
G+P P PQ + R R +P G P + P+G P + A + G
Sbjct: 343 GKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 402
Query: 74 KRPR--GRPRKWPQ 85
RP GRP + PQ
Sbjct: 403 PRPPQGGRPSRPPQ 416
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 25/93 (26%)
Query: 17 GQPAAPAPQ----KRGRGRPRKQQ-------QEPTGEPSP------------KRPRGRPK 53
G+P P PQ + R P K Q +P G P P +P+G P
Sbjct: 96 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 155
Query: 54 GSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQ 86
K + P K+ ++ + P G+P+ P Q
Sbjct: 156 PGKPQGPPPQGDNKSRSS--RSPPGKPQGPPPQ 186
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEP-----SPKRPRGRPKGSKNKS 59
G+ G P +A +P + +G P+++ P G P +P++P+ P G
Sbjct: 343 GKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 402
Query: 60 P 60
P
Sbjct: 403 P 403
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 6 EGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEP--------TGEPSPKRPRGRPKGSKN 57
+G P QG P + +G P K Q P + P +P+G P+ N
Sbjct: 316 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGN 375
Query: 58 K-----SPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQ 94
P+ ++ +A +P+G PR PQ +P Q
Sbjct: 376 NPQGPPPPAGGNPQQPQAPPAGQPQGPPRP-PQGGRPSRPPQ 416
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA 63
+ AG S + ++RG GR + + Q P + K P +P+G +K P +
Sbjct: 372 KASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRR-AQKAPAAKPRGGGSKKPRRR 430
Query: 64 AQKKAEATGEKRPRG---RPRKWPQQVVQK 90
K A++ G K G +PR+ Q+ QK
Sbjct: 431 GPKAAKSRGGKSRSGGGKKPRRRGQKARQK 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
GQ + +A + A + RGR +PR+Q +P+ + R GSK++ KA A
Sbjct: 503 GQKAEAAGEKATAAGAKSRGRKQPRRQ------KPAVAGAKSRVGGSKSRQRQKAVAAGA 556
Query: 69 EA---TGEKRPRG----RPRKWPQQVVQKKPAQEETEETSSQESA 106
+ G K+ RG +PR+W Q K ++ Q++A
Sbjct: 557 TSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAA 601
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQKR---GRGRPRKQQQEPTGEPSPKRPRGRPK-----GS 55
+ GAG G+ A A + GRGR +++ + K+PR R + GS
Sbjct: 91 KAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGS 150
Query: 56 KNKSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
KN+ AQK A A G K G + K + ++ ++ +ED
Sbjct: 151 KNRGAG--AQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDED 202
Score = 33.1 bits (74), Expect = 0.049
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSP--KRPRGRPKGSKNKSPS 61
+ AG + A Q AA A + +G + Q+ G S K+PR R S+
Sbjct: 144 KSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDK 203
Query: 62 KAAQKKAEATGEKRPRGRPRK 82
K Q++A++ K GR +K
Sbjct: 204 KGRQREAKSRFGKTRGGRRKK 224
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 4 RGEGAGQPSTSAQGQPA--APAPQKRGRG--RPRKQQQEPTGEPSPKRPRG---RPKGSK 56
RG+G +P + A APA + RG G +PR++ + K G +P+
Sbjct: 395 RGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRG 454
Query: 57 NKSPSKAAQKKAEATGEKRPRGRPR 81
K+ KAA+ AE+ G+K+ +GR +
Sbjct: 455 QKARQKAAEAGAESRGDKK-QGRQK 478
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRP-RGRPKGSKNKSPS 61
A G+ +P AQ + AA + RG G + ++P + G+K++S
Sbjct: 130 AAATGSKKPRWRAQ-KSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGK 188
Query: 62 KAAQKKAEATGEKRPRGRPRK 82
K ++ A++ G++ +GR R+
Sbjct: 189 KPRRRGAKSRGDEDKKGRQRE 209
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRG-RGRPRKQQQEPTGEPSP----KRPRGRPKGSKNKS 59
G+ A + + G + P +RG + ++ TG S K+PR + +
Sbjct: 613 GKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSE 672
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
S AA EA K+PR R K
Sbjct: 673 SSAAAAVGQEAEARKKPRRRRAK 695
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
QP G PA P P +R + P + ++ P P P+ P P+G+ A
Sbjct: 40 QPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGA------------AA 87
Query: 70 ATGEKRPRGRPRKWPQQVVQKKPAQEETEETS 101
E G PR+ ++ + +P E E S
Sbjct: 88 PEEEDEEPGDPREGEEEEEEDEPDPEAPENGS 119
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 6 EGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAA- 64
EGA P + G AAP P RG + P+ P S ++P A
Sbjct: 71 EGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMAS 130
Query: 65 -QKKAEATGEKRPR-GRPRKWPQQV-VQKKPAQEETEETSSQESAEED 109
+ +EATG+ R R GRPR+ V ++K + E S+Q ED
Sbjct: 131 PSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGED 178
>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
Length = 471
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
QP G PA P P +R + P + ++ P P P+ P P+G+ A
Sbjct: 40 QPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGA------------AA 87
Query: 70 ATGEKRPRGRPRKWPQQVVQKKPAQEETEETS 101
E G PR+ ++ + +P E E S
Sbjct: 88 PEEEDEEPGDPREGEEEEEEDEPDPEAPENGS 119
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 39.7 bits (91), Expect = 5e-04
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S G+ G P P P + +G P + P G P P +P+G P+G K++SP
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSP 151
Query: 61 SKAAQKKA--------EATGEKRPRGRPRKWPQQ 86
K + G P G+P+ P Q
Sbjct: 152 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 185
Score = 38.9 bits (89), Expect = 9e-04
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P +KS S
Sbjct: 214 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQS 273
Query: 62 KAAQKKAEATGEKRPRGRPRKWPQQ 86
+ P G+P+ PQQ
Sbjct: 274 -----------ARSPPGKPQGPPQQ 287
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKS- 59
S G+ G P P P + +G P + ++P G P P +P+G P+G K++S
Sbjct: 153 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS 212
Query: 60 ---PSK----AAQKKAEATGEKRPRGRPRKWPQQ 86
P K Q + G P G+P+ P Q
Sbjct: 213 QSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 246
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S +G Q G+P P PQ + P G P P +P+G P+G K++SP
Sbjct: 40 SPQGGNKPQGPPPPPGKPQGPPPQGGNK---------PQGPPPPGKPQGPPPQGDKSRSP 90
Query: 61 SKAAQKKA--------EATGEKRPRGRPRKWPQQ 86
K + G P G+P+ P Q
Sbjct: 91 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 124
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAA 64
G+ G P+ +A +P + +G P+++ P G P P G + P A
Sbjct: 258 GKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA-------GGNPQQPQ--A 308
Query: 65 QKKAEATGEKRPR--GRPRKWPQ 85
+ G RP GRP + PQ
Sbjct: 309 PPAGQPQGPPRPPQGGRPSRPPQ 331
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGR----------GRPRKQQQEPTGEPSPKRPRGRP 52
A+G Q + S G+P P PQ+ G G P++ Q P G+P +G P
Sbjct: 265 AQGGSKSQSARSPPGKPQGP-PQQEGNNPQGPPPPAGGNPQQPQAPPAGQP-----QGPP 318
Query: 53 KGSKNKSPSKAAQ 65
+ + PS+ Q
Sbjct: 319 RPPQGGRPSRPPQ 331
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 26/93 (27%)
Query: 17 GQPAAPAPQ----KRGRGRPRKQQ-------QEPTGEPSP------------KRPRGRPK 53
G+P P PQ + R P K Q +P G P P K+P+G P
Sbjct: 136 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPP 195
Query: 54 GSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQ 86
K + P K + + P G+P+ P Q
Sbjct: 196 PGKPQGPPPQGDK---SRSSQSPPGKPQGPPPQ 225
Score = 28.9 bits (63), Expect = 0.93
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 26/93 (27%)
Query: 17 GQPAAPAPQ----KRGRGRPRKQQ-------QEPTGEPSP------------KRPRGRPK 53
G+P P PQ + R P K Q +P G P P RP+G P
Sbjct: 75 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPP 134
Query: 54 GSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQ 86
K + P K + + P G+P+ P Q
Sbjct: 135 PGKPQGPPPQGDK---SRSPRSPPGKPQGPPPQ 164
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 17 GQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNK-----SPSKAAQKKAEAT 71
G P P+PQ G +P Q P P P +P+G P NK P K +
Sbjct: 34 GNPQGPSPQ--GGNKP----QGPP--PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD 85
Query: 72 GEKRPRGRPRK 82
+ PR P K
Sbjct: 86 KSRSPRSPPGK 96
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.298 0.118 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,665,191
Number of Sequences: 37866
Number of extensions: 403983
Number of successful extensions: 6497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 869
Number of HSP's that attempted gapping in prelim test: 3643
Number of HSP's gapped (non-prelim): 3150
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.