Search of human proteins with 4504229

Search of human proteins with 4504229

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504229 glycophorin C isoform 1 [Homo sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504229 glycophorin C isoform 1 [Homo sapiens]                     261   1e-70
gi|8051605 glycophorin C isoform 2 [Homo sapiens]                     211   1e-55
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi...    82   1e-16
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho...    67   4e-12
gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens]       63   5e-11
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho...    61   3e-10
gi|18640734 contactin associated protein-like 5 [Homo sapiens]         61   3e-10
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]         59   1e-09
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]          59   1e-09
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap...    52   1e-07
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap...    52   1e-07
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]        47   4e-06
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]           47   4e-06
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]        47   4e-06
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]        40   4e-04
gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]           40   4e-04
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]         40   4e-04
gi|76496485 small trans-membrane and glycosylated protein [Homo ...    40   5e-04
gi|76496487 small trans-membrane and glycosylated protein [Homo ...    40   5e-04
gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]              38   0.002
gi|21686977 cell adhesion molecule 4 [Homo sapiens]                    38   0.002
gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]             37   0.004
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]              37   0.004
gi|27502413 CD46 antigen, complement regulatory protein isoform ...    37   0.005
gi|27502415 CD46 antigen, complement regulatory protein isoform ...    36   0.009
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    33   0.046
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    33   0.046
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    33   0.046
gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B...    33   0.061
gi|27502425 CD46 antigen, complement regulatory protein isoform ...    33   0.061

>gi|4504229 glycophorin C isoform 1 [Homo sapiens]
          Length = 128

 Score =  261 bits (666), Expect = 1e-70
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV 60
           MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
Sbjct: 1   MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV 60

Query: 61  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 120
           VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
Sbjct: 61  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 120

Query: 121 SSRKEYFI 128
           SSRKEYFI
Sbjct: 121 SSRKEYFI 128


>gi|8051605 glycophorin C isoform 2 [Homo sapiens]
          Length = 109

 Score =  211 bits (538), Expect = 1e-55
 Identities = 109/128 (85%), Positives = 109/128 (85%), Gaps = 19/128 (14%)

Query: 1   MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV 60
           MWSTRSPNSTAWPLSLEPDPG                   MSGWPDGRMETSTPTIMDIV
Sbjct: 1   MWSTRSPNSTAWPLSLEPDPG-------------------MSGWPDGRMETSTPTIMDIV 41

Query: 61  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 120
           VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
Sbjct: 42  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101

Query: 121 SSRKEYFI 128
           SSRKEYFI
Sbjct: 102 SSRKEYFI 109


>gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapiens]
          Length = 1331

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 49/122 (40%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 8    NSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIA 67
            N  A PL+L P   M+SA+   H   +          P            +  +I GVIA
Sbjct: 1213 NCGASPLTLSP---MSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVNRNSAIIGGVIA 1269

Query: 68   AVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAA-LQGDPALQDAGDSSRKEY 126
             V   ++  L  ++RYM+RHKGTYHTNEAKG E AESADAA +  DP   +  D S+KE+
Sbjct: 1270 VVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMNNDPNFTETIDESKKEW 1329

Query: 127  FI 128
             I
Sbjct: 1330 LI 1331


>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
           sapiens]
          Length = 442

 Score = 67.0 bits (162), Expect = 4e-12
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 13  PLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIV 72
           P +  P P   + +TT  TTTI           +G +       +D  VI GV+A V   
Sbjct: 333 PPTTIPPPTTTTTTTTTTTTTILTIITDSRAGEEGSIRA-----VDHAVIGGVVAVVVFA 387

Query: 73  LVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 128
           ++ LL ++ RY  RHKGTY T+EAKG + A  AD A+      Q+     +KEYFI
Sbjct: 388 MLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQN-NSEEKKEYFI 442


>gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens]
          Length = 437

 Score = 63.2 bits (152), Expect = 5e-11
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 9   STAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGW--PDGRMETSTPTIMDIVVIAGVI 66
           +T  P ++ P    A+ +TT+  TT        S    P+     + P   D  +I G++
Sbjct: 320 NTLLPTTIIPSLTTATVTTTVAITTSPTTSATTSSIRDPNALAGQNGP---DHALIGGIV 376

Query: 67  AAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEY 126
           A V  V +  +F++ RY+ RHKGTY TNEAKG E A  AD A+      Q      +KEY
Sbjct: 377 AVVVFVTLCSIFLLGRYLARHKGTYLTNEAKGAEDAPDADTAIINAEGSQ-VNAEEKKEY 435

Query: 127 FI 128
           FI
Sbjct: 436 FI 437


>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
           sapiens]
          Length = 414

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 57  MDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQ 116
           +D  VI GV+A V   ++ LL ++ RY  RHKGTY T+EAKG + A  AD A+      Q
Sbjct: 344 VDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQ 403

Query: 117 DAGDSSRKEYFI 128
           +     +KEYFI
Sbjct: 404 N-NSEEKKEYFI 414


>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
          Length = 1306

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 24   SASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRY 83
            +A TT+H+++    DP   G  D R   +     D  VI GVIA V  ++  ++ +M R+
Sbjct: 1208 NAVTTVHSSS----DP--FGKTDEREPLTNAVRSDSAVIGGVIAVVIFIIFCIIGIMTRF 1261

Query: 84   MYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 128
            +Y+HK ++ T++ K  E+ E+ D++ + +  LQ+     ++EYFI
Sbjct: 1262 LYQHKQSHRTSQMKEKEYPENLDSSFRNEIDLQNTVSECKREYFI 1306


>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
          Length = 398

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 61  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 120
           +I G++A +  +L+ +L  +  Y+ RHKGTY T+EAKG++ A  AD A+      Q  GD
Sbjct: 332 IIGGIVAFIVFLLLIMLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGD 391

Query: 121 SSRKEYFI 128
             +KEYFI
Sbjct: 392 -DKKEYFI 398


>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
          Length = 432

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 61  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 120
           +I G++A +  +L+ +L  +  Y+ RHKGTY T+EAKG++ A  AD A+      Q  GD
Sbjct: 366 IIGGIVAFIVFLLLIMLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGD 425

Query: 121 SSRKEYFI 128
             +KEYFI
Sbjct: 426 -DKKEYFI 432


>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 42   SGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF 101
            SG  D R   +     D  VI G+IA V  +L+ +  + +R +Y+ K  Y  +EAK +E 
Sbjct: 1150 SGTIDDREPLANAIKSDSAVIGGLIAVVIFILLCITAIAVR-IYQQKRLYKRSEAKRSEN 1208

Query: 102  AESADAALQGDPALQDAGDSSRKEYF 127
             +SA+A L+ +  +Q+A + ++KEYF
Sbjct: 1209 VDSAEAVLKSELNIQNAVNENQKEYF 1234


>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sapiens]
          Length = 1308

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 42   SGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF 101
            SG  D R   +     D  VI G+IA V  +L+ +  + +R +Y+ K  Y  +EAK +E 
Sbjct: 1223 SGTIDDREPLANAIKSDSAVIGGLIAVVIFILLCITAIAVR-IYQQKRLYKRSEAKRSEN 1281

Query: 102  AESADAALQGDPALQDAGDSSRKEYF 127
             +SA+A L+ +  +Q+A + ++KEYF
Sbjct: 1282 VDSAEAVLKSELNIQNAVNENQKEYF 1307


>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
          Length = 1712

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 13   PLSLEPD------PGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVI 66
            P S EP       PG+ SA    H  T     PG  G P G +E    +     ++ G++
Sbjct: 1585 PTSFEPRRPPPLRPGVTSAPGFPHLPTANPTGPGERG-PPGAVEVIRESSSTTGMVVGIV 1643

Query: 67   AAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKG--TEFAESADAAL-QGDPAL----QDAG 119
            AA A+ ++ LL+ M +Y  R +G+Y  ++++   +  A+S  A + +  PA       A 
Sbjct: 1644 AAAALCILILLYAMYKYRNRDEGSYQVDQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAK 1703

Query: 120  DSSRKEYFI 128
             +  KEY++
Sbjct: 1704 KNKDKEYYV 1712


>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
          Length = 666

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 13  PLSLEPD------PGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVI 66
           P S EP       PG+ SA    H  T     PG  G P G +E    +     ++ G++
Sbjct: 539 PTSFEPRRPPPLRPGVTSAPGFPHLPTANPTGPGERG-PPGAVEVIRESSSTTGMVVGIV 597

Query: 67  AAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKG--TEFAESADAAL-QGDPAL----QDAG 119
           AA A+ ++ LL+ M +Y  R +G+Y  ++++   +  A+S  A + +  PA       A 
Sbjct: 598 AAAALCILILLYAMYKYRNRDEGSYQVDQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAK 657

Query: 120 DSSRKEYFI 128
            +  KEY++
Sbjct: 658 KNKDKEYYV 666


>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
          Length = 1642

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 13   PLSLEPD------PGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVI 66
            P S EP       PG+ SA    H  T     PG  G P G +E    +     ++ G++
Sbjct: 1515 PTSFEPRRPPPLRPGVTSAPGFPHLPTANPTGPGERG-PPGAVEVIRESSSTTGMVVGIV 1573

Query: 67   AAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKG--TEFAESADAAL-QGDPAL----QDAG 119
            AA A+ ++ LL+ M +Y  R +G+Y  ++++   +  A+S  A + +  PA       A 
Sbjct: 1574 AAAALCILILLYAMYKYRNRDEGSYQVDQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAK 1633

Query: 120  DSSRKEYFI 128
             +  KEY++
Sbjct: 1634 KNKDKEYYV 1642


>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
          Length = 1547

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 36   EPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNE 95
            EP PG +   +   E+S+ T M    + G++AA A+ ++ LL+ M +Y  R +G+YH +E
Sbjct: 1455 EPYPGSA---EVIRESSSTTGM----VVGIVAAAALCILILLYAMYKYRNRDEGSYHVDE 1507

Query: 96   AKG--TEFAESADAAL-QGDPALQDAGDSSR----KEYFI 128
            ++   +  A+S  A + +  P+   + + ++    KEY++
Sbjct: 1508 SRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV 1547


>gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]
          Length = 442

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 36  EPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNE 95
           EP PG +   +   E+S+ T M    + G++AA A+ ++ LL+ M +Y  R +G+YH +E
Sbjct: 350 EPYPGSA---EVIRESSSTTGM----VVGIVAAAALCILILLYAMYKYRNRDEGSYHVDE 402

Query: 96  AKG--TEFAESADAAL-QGDPALQDAGDSSR----KEYFI 128
           ++   +  A+S  A + +  P+   + + ++    KEY++
Sbjct: 403 SRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV 442


>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
          Length = 1477

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 36   EPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNE 95
            EP PG +   +   E+S+ T M    + G++AA A+ ++ LL+ M +Y  R +G+YH +E
Sbjct: 1385 EPYPGSA---EVIRESSSTTGM----VVGIVAAAALCILILLYAMYKYRNRDEGSYHVDE 1437

Query: 96   AKG--TEFAESADAAL-QGDPALQDAGDSSR----KEYFI 128
            ++   +  A+S  A + +  P+   + + ++    KEY++
Sbjct: 1438 SRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV 1477


>gi|76496485 small trans-membrane and glycosylated protein [Homo
           sapiens]
          Length = 97

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 16/98 (16%)

Query: 31  TTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGT 90
           TT I +P   +S  P+    T+        +IA VI  V + L+S++ ++  Y+Y++KG+
Sbjct: 16  TTPILQPTEALS--PEDGASTA--------LIAVVITVVFLTLLSVVILIFFYLYKNKGS 65

Query: 91  YHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 128
           Y T E   TE   SA   ++ D     A  S ++EYFI
Sbjct: 66  YVTYEP--TEGEPSAIVQMESDL----AKGSEKEEYFI 97


>gi|76496487 small trans-membrane and glycosylated protein [Homo
           sapiens]
          Length = 97

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 16/98 (16%)

Query: 31  TTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGT 90
           TT I +P   +S  P+    T+        +IA VI  V + L+S++ ++  Y+Y++KG+
Sbjct: 16  TTPILQPTEALS--PEDGASTA--------LIAVVITVVFLTLLSVVILIFFYLYKNKGS 65

Query: 91  YHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 128
           Y T E   TE   SA   ++ D     A  S ++EYFI
Sbjct: 66  YVTYEP--TEGEPSAIVQMESDL----AKGSEKEEYFI 97


>gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]
          Length = 432

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 21/144 (14%)

Query: 3   STRSPNSTAWPLSLEPDP----GMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMD 58
           +TR   STA   S++P        A  S+        EP  G S  P        P   +
Sbjct: 292 TTRKNRSTA---SIQPTSDDLVSSAECSSDDEDFVECEPSTGRSANPTEPGIRRVPGASE 348

Query: 59  IV--------VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKG--TEFAESADAA 108
           ++        ++ G++AA A+ ++ LL+ M +Y  R +G+Y  +E +   +  A+S    
Sbjct: 349 VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTL 408

Query: 109 LQGDPALQDAGDSSRK----EYFI 128
           ++       +G   +K    EY++
Sbjct: 409 MKEKQQSSKSGHKKQKNKDREYYV 432


>gi|21686977 cell adhesion molecule 4 [Homo sapiens]
          Length = 388

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 55  TIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKG-TEFAESADAALQGDP 113
           T +   ++ G++A +  +++ +L  M+    R KG+Y T+EA G  E  E+ +A L G  
Sbjct: 319 TSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSD 378

Query: 114 ALQDAGDSSRKEYFI 128
                G   ++E+FI
Sbjct: 379 -----GHKRKEEFFI 388


>gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]
          Length = 459

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 32  TTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTY 91
           +T    +PG+   P G  E    +     ++ G++AA A+ ++ LL+ M +Y  R +G+Y
Sbjct: 358 STANPTEPGIRRVP-GASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSY 416

Query: 92  HTNEAKG--TEFAESADAALQGDPALQDAGDSSRK----EYFI 128
             +E +   +  A+S    ++       +G   +K    EY++
Sbjct: 417 QVDETRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 459


>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
          Length = 1061

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 32   TTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTY 91
            +T    +PG+   P G  E    +     ++ G++AA A+ ++ LL+ M +Y  R +G+Y
Sbjct: 960  STANPTEPGIRRVP-GASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSY 1018

Query: 92   HTNEAKG--TEFAESADAALQGDPALQDAGDSSRK----EYFI 128
              +E +   +  A+S    ++       +G   +K    EY++
Sbjct: 1019 QVDETRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 1061


>gi|27502413 CD46 antigen, complement regulatory protein isoform 7
           precursor [Homo sapiens]
          Length = 378

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 13  PLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIV 72
           P S +P P ++ + +T  TT    P    SG+P  + E      +D+ VIA ++ A+ + 
Sbjct: 289 PSSTKP-PALSHSVSTSSTTK--SPASSASGYP--KPEEGILDSLDVWVIAVIVIAIVVG 343

Query: 73  LVSLLFVMLRYMYRH--KGTYHTNE 95
           +  +  V  RY+ R   KGTY T+E
Sbjct: 344 VAVICVVPYRYLQRRKKKGTYLTDE 368


>gi|27502415 CD46 antigen, complement regulatory protein isoform 9
           precursor [Homo sapiens]
          Length = 363

 Score = 35.8 bits (81), Expect = 0.009
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 19  DPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLF 78
           DP +        ++T   P    SG+P  + E      +D+ VIA ++ A+ + +  +  
Sbjct: 277 DPPVPKCLKVSTSSTTKSPASSASGYP--KPEEGILDSLDVWVIAVIVIAIVVGVAVICV 334

Query: 79  VMLRYMYRH--KGTYHTNE 95
           V  RY+ R   KGTY T+E
Sbjct: 335 VPYRYLQRRKKKGTYLTDE 353


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 13  PLSLEPDPGMASASTTMHTTT---IAEPDPGMSGWPD--GRMETSTPT 55
           PL     P +AS +TT+ TTT   +AE D G +G P+     E STP+
Sbjct: 682 PLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPS 729


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 13  PLSLEPDPGMASASTTMHTTT---IAEPDPGMSGWPD--GRMETSTPT 55
           PL     P +AS +TT+ TTT   +AE D G +G P+     E STP+
Sbjct: 682 PLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPS 729


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 13  PLSLEPDPGMASASTTMHTTT---IAEPDPGMSGWPD--GRMETSTPT 55
           PL     P +AS +TT+ TTT   +AE D G +G P+     E STP+
Sbjct: 682 PLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPS 729


>gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B,
           member 2 isoform 2 [Homo sapiens]
          Length = 597

 Score = 33.1 bits (74), Expect = 0.061
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 19/110 (17%)

Query: 15  SLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETS-------TPTIMD--------I 59
           SL  DP + S  +      ++ P  G S  P G + T        TPT  D        +
Sbjct: 399 SLNSDPYLLSHPSEPLELVVSGPSMGSSPPPTGPISTPGPEDQPLTPTGSDPQSGLGRHL 458

Query: 60  VVIAGVIAAVAIVLVSLLFVMLRYMYRHK--GTYHTNEAKGTEFAESADA 107
            V+ G++  VA+VL+ LL ++L  + RH+  G + T+  +  +F   A A
Sbjct: 459 GVVIGIL--VAVVLLLLLLLLLFLILRHRRQGKHWTSTQRKADFQHPAGA 506


>gi|27502425 CD46 antigen, complement regulatory protein isoform 8
           precursor [Homo sapiens]
          Length = 385

 Score = 33.1 bits (74), Expect = 0.061
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 13  PLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIV 72
           P S +P P ++ + +T  TT    P    SG+P  + E      +D+ VIA ++ A+ + 
Sbjct: 289 PSSTKP-PALSHSVSTSSTTK--SPASSASGYP--KPEEGILDSLDVWVIAVIVIAIVVG 343

Query: 73  LVSLLFVMLRYMYRHK--------GTYHTNEAKGTEFAE 103
           +  +  V  RY+ R K          Y T + K T  AE
Sbjct: 344 VAVICVVPYRYLQRRKKKGKADGGAEYATYQTKSTTPAE 382


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,036,232
Number of Sequences: 37866
Number of extensions: 205012
Number of successful extensions: 923
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 104
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.