Search of human proteins with 42476068

Search of human proteins with 42476068

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo
sapiens]
         (120 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]    240   2e-64
gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]    240   2e-64
gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]    240   2e-64
gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]    240   2e-64
gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]         44   3e-05
gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]        41   2e-04
gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]        37   0.003
gi|9625002 integrin, beta 6 [Homo sapiens]                             27   3.6  
gi|7019349 gremlin-1 precursor [Homo sapiens]                          26   7.9  
gi|144953903 developmental pluripotency associated 4 [Homo sapiens]    26   7.9  
gi|170784865 CAS1 domain containing 1 [Homo sapiens]                   26   7.9  
gi|23110997 membrane-spanning 4-domains, subfamily A, member 5 [...    26   7.9  
gi|13236549 major facilitator superfamily domain containing 11 [...    26   7.9  
gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]     26   7.9  
gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]     26   7.9  

>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
          Length = 183

 Score =  240 bits (613), Expect = 2e-64
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
           MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 64  MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 123

Query: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
           IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 124 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 183


>gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
          Length = 120

 Score =  240 bits (613), Expect = 2e-64
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
           MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60

Query: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
           IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120


>gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
          Length = 120

 Score =  240 bits (613), Expect = 2e-64
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
           MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60

Query: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
           IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120


>gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
          Length = 120

 Score =  240 bits (613), Expect = 2e-64
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
           MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 1   MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60

Query: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
           IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120


>gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
          Length = 195

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 4   SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYK---AIALATVLFLIGAFLI 60
           +R +  T I SS+  +S +SS+     +     T   +  K    +  + +L L+G  LI
Sbjct: 79  TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLI 138

Query: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119
           ++G  L +      G   A+   + G L+ +PG YH+   Y A KG+RG+ +  +P F+
Sbjct: 139 LVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 194


>gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
          Length = 186

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 44  KAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYA 103
           + +  + +L L+G  LI++G  L +      G   A+   + G L+ +PG YH+   Y A
Sbjct: 113 RVVLASFLLLLLGLVLILVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCA 169

Query: 104 SKGYRGYSYDDIPDFD 119
            KG+RG+ +  +P F+
Sbjct: 170 VKGHRGFQFFYLPYFE 185


>gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]
          Length = 180

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 4   SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLIIIG 63
           +R +  T I SS+  +S +SS+     +     T   +  K   +    FL         
Sbjct: 79  TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL--------- 129

Query: 64  SLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119
            LLL G     G   A+   + G L+ +PG YH+   Y A KG+RG+ +  +P F+
Sbjct: 130 -LLLLGL----GVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 179


>gi|9625002 integrin, beta 6 [Homo sapiens]
          Length = 788

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 38  PPKIPYKAIALATVLFLIGAFLIIIGSLLLS 68
           PP IP   + ++  + LIG  L+ I  LL+S
Sbjct: 705 PPNIPMIMLGVSLAILLIGVVLLCIWKLLVS 735


>gi|7019349 gremlin-1 precursor [Homo sapiens]
          Length = 184

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 48 LATVLFLIGAFLIIIGSLLLSGYISKGGADRAVP 81
          ++   + +GA L+++G+LL +    K G+  A+P
Sbjct: 1  MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIP 34


>gi|144953903 developmental pluripotency associated 4 [Homo sapiens]
          Length = 304

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 9   ATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGA 57
           A+G+    V    L +  DG++ LQF      +P K     + LFL+ A
Sbjct: 225 ASGVRWCVVHGKSLPADTDGWVHLQFHAGQAWVPEKQEGRVSALFLLPA 273


>gi|170784865 CAS1 domain containing 1 [Homo sapiens]
          Length = 797

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 84  IIGILVFLPGFYHLRI---AYYASKGYRGYSY 112
           I G   FLP + H+R+   AY    GY  +SY
Sbjct: 447 ISGASTFLPVYMHIRVLVAAYLFQTGYGHFSY 478


>gi|23110997 membrane-spanning 4-domains, subfamily A, member 5
           [Homo sapiens]
          Length = 200

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 47  ALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGF 94
           A+A ++ L   F  I+    + GY  +    +AV VL +GIL+ L  F
Sbjct: 128 AIAGIILLTFGF--ILDQNYICGYSHQNSQCKAVTVLFLGILITLMTF 173


>gi|13236549 major facilitator superfamily domain containing 11
           [Homo sapiens]
          Length = 449

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 55  IGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFY 95
           IG   I+ GSL   G +SK       PV+++GILV    FY
Sbjct: 285 IGIGEILGGSLF--GLLSKNNRFGRNPVVLLGILVHFIAFY 323


>gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]
          Length = 1086

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 77  DRAVPVLIIGILVFLPGFYHLRIAYYASK 105
           D A+ + +  I    PGFY+ + AYYA +
Sbjct: 331 DEAIKLGLTAIQTQNPGFYYQQAAYYAQE 359


>gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]
          Length = 1133

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 77  DRAVPVLIIGILVFLPGFYHLRIAYYASK 105
           D A+ + +  I    PGFY+ + AYYA +
Sbjct: 331 DEAIKLGLTAIQTQNPGFYYQQAAYYAQE 359


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.145    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,398,231
Number of Sequences: 37866
Number of extensions: 166494
Number of successful extensions: 411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 15
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.