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Search of human proteins with 40538799
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
(601 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 1175 0.0
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 688 0.0
gi|16753207 ubiquilin 2 [Homo sapiens] 666 0.0
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 627 e-180
gi|8567418 ubiquilin 3 [Homo sapiens] 306 3e-83
gi|145580580 ubiquilin-like [Homo sapiens] 187 3e-47
gi|38158015 mastermind-like 3 [Homo sapiens] 58 3e-08
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 55 2e-07
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 55 2e-07
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 54 5e-07
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 53 9e-07
gi|41152107 ubiquitin-like 7 [Homo sapiens] 52 2e-06
gi|14249682 ubiquitin-like 7 [Homo sapiens] 52 2e-06
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 51 3e-06
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 51 3e-06
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 51 3e-06
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 50 5e-06
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 50 5e-06
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 49 1e-05
gi|50345997 E1A binding protein p300 [Homo sapiens] 48 3e-05
gi|38788274 bromodomain PHD finger transcription factor isoform ... 47 4e-05
gi|238859557 regulatory factor X1 [Homo sapiens] 44 3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 4e-04
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 44 4e-04
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 44 6e-04
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 44 6e-04
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 44 6e-04
gi|241982780 programmed cell death 6 interacting protein isoform... 43 7e-04
gi|22027538 programmed cell death 6 interacting protein isoform ... 43 7e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 42 0.001
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 1175 bits (3039), Expect = 0.0
Identities = 601/601 (100%), Positives = 601/601 (100%)
Query: 1 MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKI 60
MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKI
Sbjct: 1 MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKI 60
Query: 61 LKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQ 120
LKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQ
Sbjct: 61 LKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQ 120
Query: 121 PSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFME 180
PSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFME
Sbjct: 121 PSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFME 180
Query: 181 LQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLN 240
LQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLN
Sbjct: 181 LQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLN 240
Query: 241 NPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQ 300
NPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQ
Sbjct: 241 NPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQ 300
Query: 301 FGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHP 360
FGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHP
Sbjct: 301 FGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHP 360
Query: 361 TVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFA 420
TVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFA
Sbjct: 361 TVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFA 420
Query: 421 AQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQ 480
AQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQ
Sbjct: 421 AQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQ 480
Query: 481 TEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQM 540
TEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQM
Sbjct: 481 TEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQM 540
Query: 541 IQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQL 600
IQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQL
Sbjct: 541 IQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQL 600
Query: 601 S 601
S
Sbjct: 601 S 601
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 688 bits (1775), Expect = 0.0
Identities = 384/612 (62%), Positives = 449/612 (73%), Gaps = 62/612 (10%)
Query: 4 PSGAETRPP--IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKIL 61
P+ A + P ++VTVKTPK+KEE + + +SV++FKEEIS+RFK+ DQLVLIFAGKIL
Sbjct: 26 PAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL 85
Query: 62 KDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQP 121
KD DTL+QHGI DGLTVHLVIKT + QD +A ++ A + TT + TP
Sbjct: 86 KDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNT------AGSNVTTSS---TPNSN 136
Query: 122 STSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMEL 181
STSGSA+S+ L G GG+ GL SLGL + NF EL
Sbjct: 137 STSGSATSNPFG-------------------------LGGLGGLAGLSSLGLNTTNFSEL 171
Query: 182 QQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNN 241
Q QMQRQL+SNPEM+ QIMENP VQ M+SNPDLMR +IMANPQMQQL++RNPEISHMLNN
Sbjct: 172 QSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNN 231
Query: 242 PELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQF 301
P++MRQT+ELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPM SAA+EQF
Sbjct: 232 PDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQF 291
Query: 302 GNNPFSSLAGNSDS-SSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGG-------S 353
G NPF+SL N+ S SQP RTENR+PLPNPW+P S + SG T G S
Sbjct: 292 GGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTAS 351
Query: 354 GTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTL 413
GTS T N +G+ MFN+P MQ+LLQQI+ENPQLMQN++SAPYMRSMMQ+L
Sbjct: 352 GTSGQSTTAPN----LVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSL 407
Query: 414 AQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQ 473
+QNPD AAQMM+N PLFAGNPQLQEQ+R QLP FLQQMQNP++LS ++NPRAMQALLQIQ
Sbjct: 408 SQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQ 467
Query: 474 QGLQTLQTEAPGLV----PSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGA 529
QGLQTL TEAPGL+ P LG+ G + + + GSNA TP TS T T+ P
Sbjct: 468 QGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNA--TPSENTS--PTAGTTEP--- 520
Query: 530 SSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDIN 589
QQ +QQM+Q LAG N Q+Q PEVRFQQQLEQL++MGF+NREANLQALIATGGDIN
Sbjct: 521 --GHQQFIQQMLQALAGV-NPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDIN 577
Query: 590 AAIERLLGSQLS 601
AAIERLLGSQ S
Sbjct: 578 AAIERLLGSQPS 589
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 666 bits (1719), Expect = 0.0
Identities = 374/642 (58%), Positives = 446/642 (69%), Gaps = 79/642 (12%)
Query: 2 AEPSGAETRPP--IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGK 59
A+ S A P I+VTVKTPK+KEE + + +SV++FKE IS+RFK+Q DQLVLIFAGK
Sbjct: 20 AQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGK 79
Query: 60 ILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPA 119
ILKD DTL QHGI DGLTVHLVIK+ + Q + P++A T S +TP
Sbjct: 80 ILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQST---------QPSNAAGTNTTSASTPR 130
Query: 120 QPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFM 179
ST S +S+ L GG+ GL SLGL S NF
Sbjct: 131 SNSTPISTNSNPFG-------------------------LGSLGGLAGLSSLGLSSTNFS 165
Query: 180 ELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHML 239
ELQ QMQ+QLM++PEM+ QIMENP VQ M+SNPDLMR +IMANPQMQQL++RNPEISH+L
Sbjct: 166 ELQSQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLL 225
Query: 240 NNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAARE 299
NNP++MRQT+E+ARNPAMMQEMMRNQD ALSNLESIPGGYNALRRMYTDIQEPM +AA+E
Sbjct: 226 NNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQE 285
Query: 300 QFGNNPFSSLAGNSDS-SSSQPLRTENREPLPNPWSPSPPT-SQAPGSGGEGTG-GSGTS 356
QFG NPF+S+ +S S +QP RTENR+PLPNPW+P P T S A S TG GSG S
Sbjct: 286 QFGGNPFASVGSSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNS 345
Query: 357 QVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQN 416
+ T + + AA+ + +F++P MQ+LLQQI+ENPQL+QN++SAPYMRSMMQ+L+QN
Sbjct: 346 SSNATGNT---VAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQN 402
Query: 417 PDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGL 476
PD AAQMM+N PLF NPQLQEQ+R QLP FLQQMQNP++LS ++NPRAMQAL+QIQQGL
Sbjct: 403 PDLAAQMMLNSPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGL 462
Query: 477 QTLQTEAPGLVPS----------------------LGSFG-------------ISRT-PA 500
QTL TEAPGL+PS +G G I T PA
Sbjct: 463 QTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPA 522
Query: 501 PSAGSNAGSTPEAPTSSPATPA-TSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRF 559
GS P PT S A P+ T+SPT S QQ +QQM+Q LAG+ Q+ PEVRF
Sbjct: 523 APPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRF 582
Query: 560 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQLS 601
QQQLEQLN+MGF+NREANLQALIATGGDINAAIERLLGSQ S
Sbjct: 583 QQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQPS 624
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 627 bits (1617), Expect = e-180
Identities = 361/612 (58%), Positives = 424/612 (69%), Gaps = 90/612 (14%)
Query: 4 PSGAETRPP--IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKIL 61
P+ A + P ++VTVKTPK+KEE + + +SV++FKEEIS+RFK+ DQLVLIFAGKIL
Sbjct: 26 PAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL 85
Query: 62 KDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQP 121
KD DTL+QHGI DGLTVHLVIKT + QD +A ++ A + TT + TP
Sbjct: 86 KDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNT------AGSNVTTSS---TPNSN 136
Query: 122 STSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMEL 181
STSGSA+S+ L G GG+ GL SLGL + NF EL
Sbjct: 137 STSGSATSNPFG-------------------------LGGLGGLAGLSSLGLNTTNFSEL 171
Query: 182 QQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNN 241
Q QMQRQL+SNPEM+ QIMENP VQ M+SNPDLMR +IMANPQMQQL++RNPEISHMLNN
Sbjct: 172 QSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNN 231
Query: 242 PELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQF 301
P++MRQT+ELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPM SAA+EQF
Sbjct: 232 PDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQF 291
Query: 302 GNNPFSSLAGNSDS-SSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGG-------S 353
G NPF+SL N+ S SQP RTENR+PLPNPW+P S + SG T G S
Sbjct: 292 GGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTAS 351
Query: 354 GTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTL 413
GTS T N +G+ MFN+P MQ+LLQQI+ENPQLMQN++SAPYMRSMMQ+L
Sbjct: 352 GTSGQSTTAPN----LVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSL 407
Query: 414 AQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQ 473
+QNPD AA QMQNP++LS ++NPRAMQALLQIQ
Sbjct: 408 SQNPDLAA----------------------------QMQNPDTLSAMSNPRAMQALLQIQ 439
Query: 474 QGLQTLQTEAPGLV----PSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGA 529
QGLQTL TEAPGL+ P LG+ G + + + GSNA TP TS T T+ P
Sbjct: 440 QGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNA--TPSENTS--PTAGTTEP--- 492
Query: 530 SSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDIN 589
QQ +QQM+Q LAG N Q+Q PEVRFQQQLEQL++MGF+NREANLQALIATGGDIN
Sbjct: 493 --GHQQFIQQMLQALAGV-NPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDIN 549
Query: 590 AAIERLLGSQLS 601
AAIERLLGSQ S
Sbjct: 550 AAIERLLGSQPS 561
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 306 bits (785), Expect = 3e-83
Identities = 209/571 (36%), Positives = 292/571 (51%), Gaps = 81/571 (14%)
Query: 13 IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQHGI 72
I+VTVKTPKDKE+ + D ++++ KEEIS+RFKA DQLVLIFAGKILKD D+L Q G+
Sbjct: 22 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 81
Query: 73 KDGLTVHLVIKTPQKAQDPAAATASSPST-PDPASAPSTTPASPATPAQPSTSGSASSDA 131
+DGLTVHLVIK +A AS P+ P P S P + PA
Sbjct: 82 RDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPSSIYPA--------------- 126
Query: 132 GSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMS 191
+G P+ + +L+G L LGL F + + RQ +S
Sbjct: 127 -----------------DGPPAFSLGLLTG------LSRLGLAYRGFPDQPSSLMRQHVS 163
Query: 192 NPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMEL 251
PE ++Q++++P + ++SN L+R +++ NP MQQL++ NPEI H+LNNPE+MRQT+E
Sbjct: 164 VPEFVTQLIDDPFIPGLLSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEF 223
Query: 252 ARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPF-SSLA 310
RNPAMMQEM+R+QDR LSNLESIPGGYN L MYTDI +PM +A +EQFG NPF ++
Sbjct: 224 LRNPAMMQEMIRSQDRVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATT 283
Query: 311 GNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINA 370
N+ +++SQP R EN +PLPNPW + G G G Q P + N F
Sbjct: 284 DNATTTTSQPSRMENCDPLPNPW------TSTHGGSGSRQGRQDGDQDAPDIRNRF---- 333
Query: 371 ASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQN---PDFAAQMMVNV 427
+ LQQ+ ENPQ + Y++ L+Q+ P ++ +
Sbjct: 334 ----PNFLGIIRLYDYLQQLHENPQSL-----GTYLQGTASALSQSQEPPPSVNRVPPSS 384
Query: 428 PLF----AGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTL--QT 481
P +G P +E + ++ + P L T Q Q G + T
Sbjct: 385 PSSQEPGSGQPLPEESVAIK-----GRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHST 439
Query: 482 EAPGLVPSLGSFGISRTP-APSAGSNAGSTPEAP----TSSPATPATSSPTGASSAQ--Q 534
P LV LG +R P AP + S + P P SPA P + P G + A Q
Sbjct: 440 NLPDLVSGLGD-SANRVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQ 498
Query: 535 QLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQ 565
+Q + LL + ++ +Q+EQ
Sbjct: 499 DEIQPQLPLLMHLQAAMANPRALQALRQIEQ 529
>gi|145580580 ubiquilin-like [Homo sapiens]
Length = 475
Score = 187 bits (474), Expect = 3e-47
Identities = 149/489 (30%), Positives = 222/489 (45%), Gaps = 90/489 (18%)
Query: 14 RVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQHGIK 73
RV VKT ++++ ++ D SV++FKE + F+ Q DQLVL+F G +LKD DTL+Q GI
Sbjct: 32 RVIVKTAGNQKDFMVADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLLKDHDTLSQRGIM 91
Query: 74 DGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGS 133
DG T++LVIK+ Q ++ A + P T DP T + + QP+ A +
Sbjct: 92 DGHTIYLVIKSKQGSRSLAHSFRDLP-TNDPCHRDRNTKGNSSRVHQPTGMNQAPVELAH 150
Query: 134 GSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNP 193
G +P L +S+P
Sbjct: 151 F------------VGSDAPKVHTQNLE-----------------------------VSHP 169
Query: 194 EMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHML-NNPELMRQTMELA 252
E +Q++ENP +Q ++SN + M I + QQLM++NPE+S +L +N E++ QT+ELA
Sbjct: 170 ECKAQMLENPSIQRLLSNMEFMWQFISEHLDTQQLMQQNPEVSRLLLDNSEILLQTLELA 229
Query: 253 RNPAMMQEMMRNQDRALS-----------NLESIPGGYNALRRMYTDIQEPMFSAAREQF 301
RN AM+QE+M+ Q + + LE++PGG NAL + Y DI + M ++ ++ F
Sbjct: 230 RNLAMIQEIMQIQQPSQNLEYPLNPQPYLGLETMPGGNNALGQNYADINDQMLNSMQDPF 289
Query: 302 GNNPFSSLAGNS--DSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVH 359
G NPF++L + S P + + + P T S G + + +
Sbjct: 290 GGNPFTALLAGQVLEQVQSSPPPPPPSQEQQDQLTQHPATRVIYNSSGGFSSNTSANDTL 349
Query: 360 PTVSNPFGINAASL---GSGMFNSPEMQA---------LLQQISE--------------- 392
V++ N A + G + A L QQ+ E
Sbjct: 350 NKVNHTSKANTAMISTKGQSHICATRQPAWIPALPSIELTQQLQEEYKDATVSLSSSRQT 409
Query: 393 ---NPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQ 449
+ QL S+ MMQ L NP AAQ+M LF PQL EQ R QLP FLQ
Sbjct: 410 LKGDLQLSDEQSSSQITGGMMQLLMNNPYLAAQIM----LFTSMPQLSEQWRQQLPTFLQ 465
Query: 450 QMQNPESLS 458
Q Q + LS
Sbjct: 466 QTQISDLLS 474
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 57.8 bits (138), Expect = 3e-08
Identities = 116/542 (21%), Positives = 192/542 (35%), Gaps = 122/542 (22%)
Query: 94 ATASSPSTPDPASAPSTTPA-SPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSP 152
+ AS+P+ P+PAS+P+ SP TP Q T G A G+G + G+ G
Sbjct: 396 SVASTPAAPNPASSPANCAVQSPQTPNQAHTPGQAPPRPGNGYLLNPAAVTVAGSASGPV 455
Query: 153 SATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLM---------------------- 190
+ +S +S + + + A M+ +QQ Q+Q
Sbjct: 456 AVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWS 515
Query: 191 ------------------SNPEMLSQIM--ENPLVQDM--------MSNPDLMRHMIMAN 222
++P M Q +NP+V M M+N HM M N
Sbjct: 516 PLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMANNLQKTTMNNYLPQNHMNMIN 575
Query: 223 PQMQQLMERNPEISHML----NNPELMRQTMELA-----------RNPAM-----MQEMM 262
Q L + H + N L +L+ +NP M Q+
Sbjct: 576 QQPNNLGTNSLNKQHNILTYGNTKPLTHFNADLSQRMTPPVANPNKNPLMPYIQQQQQQQ 635
Query: 263 RNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLR 322
+ Q + + P A R ++ Q+ + ++ N P + A S P+
Sbjct: 636 QQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMNQPMAYAALPSHGQEQHPV- 694
Query: 323 TENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPE 382
LP P +S PGSGG +G A+ G G S
Sbjct: 695 -----GLPRTTGPM-QSSVPPGSGGMVSG------------------ASPAGPGFLGSQP 730
Query: 383 MQALLQQ--ISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQL 440
A+++Q I + QL++ ++R Q Q A+ QLQ+
Sbjct: 731 QAAIMKQMLIDQRAQLIEQQ-KQQFLREQRQQQQQQQQILAEQ-----------QLQQS- 777
Query: 441 RLQLP-VFLQQMQNPESLSILT----NPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGI 495
LP LQ +NP + + +P+ + A ++ Q LQ+++T + + G GI
Sbjct: 778 --HLPRQHLQPQRNPYPVQQVNQFQGSPQDI-AAVRSQAALQSMRTSRL-MAQNAGMMGI 833
Query: 496 SRTPAPSAGSNAGSTPEAPTSSPATPATSSP--TGASSAQQQLMQQMIQLLAGSGNSQVQ 553
+ P + A + E + +T TS P S+ Q++Q Q ++Q Q
Sbjct: 834 GPSQNPGTMATAAAQSEMGLAPYSTTPTSQPGMYNMSTGMTQMLQHPNQSGMSITHNQAQ 893
Query: 554 TP 555
P
Sbjct: 894 GP 895
Score = 36.2 bits (82), Expect = 0.089
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 462 NPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATP 521
NP + A +Q Q PG P G PA + + S P A SS +P
Sbjct: 405 NPASSPANCAVQSPQTPNQAHTPGQAPPRPGNGYLLNPAAVTVAGSASGPVAVPSSDMSP 464
Query: 522 ATSSPTGASSAQQ--QLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQ 579
A A+ QQ +LMQQ Q Q + + QQQ +Q N+ +N
Sbjct: 465 AEQLKQMAAQQQQRAKLMQQ---------KQQQQQQQQQQQQQQQQQQQQQHSNQTSNWS 515
Query: 580 AL 581
L
Sbjct: 516 PL 517
Score = 35.4 bits (80), Expect = 0.15
Identities = 46/152 (30%), Positives = 60/152 (39%), Gaps = 21/152 (13%)
Query: 434 PQLQEQLRLQLPVFLQQMQNPESLSILTNPRA------MQALLQIQQGLQTLQTEAPGLV 487
P +Q+Q + Q QQ Q L PRA + LL Q+G+ Q A +
Sbjct: 626 PYIQQQQQQQQQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMN-QPMAYAAL 684
Query: 488 PSLGS----FGISRTPAPSAGS-NAGSTPEAPTSSPATPAT--SSPTGASSAQ------- 533
PS G G+ RT P S GS +SPA P S P A Q
Sbjct: 685 PSHGQEQHPVGLPRTTGPMQSSVPPGSGGMVSGASPAGPGFLGSQPQAAIMKQMLIDQRA 744
Query: 534 QQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQ 565
Q + QQ Q L Q Q ++ +QQL+Q
Sbjct: 745 QLIEQQKQQFLREQRQQQQQQQQILAEQQLQQ 776
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 55.1 bits (131), Expect = 2e-07
Identities = 108/517 (20%), Positives = 175/517 (33%), Gaps = 106/517 (20%)
Query: 83 KTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGG 142
K+ DP A S T PA+ + P P Q + G S G S G
Sbjct: 73 KSQASVSDPMNALQSL--TGGPAAGAAGIGMPPRGPGQ--SLGGMGSLGAMGQPMSLSGQ 128
Query: 143 PSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMEN 202
P PG +P + A + + L L + QQQ Q Q + Q +
Sbjct: 129 PPPGTSGMAPHSMAVVSTATPQT----QLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQ 184
Query: 203 PLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHML-----NNPELMRQTMELARNPAM 257
Q + + Q QQL ++ + H++ N ++ +Q +L R +
Sbjct: 185 QQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQL 244
Query: 258 MQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSS 317
+ + Q + + AL+ Q PM +Q P +L
Sbjct: 245 QLQQQQQQQQQQQQQQQ-----QALQAQPPIQQPPM-----QQPQPPPSQALP----QQL 290
Query: 318 SQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGM 377
Q T++ +P P P P P + + + SQ P VS A G +
Sbjct: 291 QQMHHTQHHQPPPQPQQP-------PVAQNQPSQLPPQSQTQPLVSQA----QALPGQML 339
Query: 378 FNSPEMQ-----ALLQQISENPQLMQNVIS----------APYMRSMMQTLAQN------ 416
+ P ++ ++QQ PQ+ Q + AP ++ + + LAQ
Sbjct: 340 YTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQMITEALAQGGMHIRA 399
Query: 417 ---PDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFL-----QQMQNPESLSILTNPRAMQA 468
P A + + + G + + + LP+ QQ+Q P+S+ P
Sbjct: 400 RFPPTTAVSAIPSSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQP----- 454
Query: 469 LLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPAT----- 523
+ PG S + +S PAPS S S P+ SP T T
Sbjct: 455 ------------SPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFS 502
Query: 524 ----------------SSPTGASSA-QQQLMQQMIQL 543
SP G+S A +QQ + ++ QL
Sbjct: 503 VPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQL 539
Score = 29.6 bits (65), Expect = 8.3
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 485 GLVPSLGSFG--ISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQ 542
G + SLG+ G +S + P G++ + S ATP T + QQQ QQ Q
Sbjct: 111 GGMGSLGAMGQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQ 170
Query: 543 LLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQ 579
Q + QQQ +Q F +++ +Q
Sbjct: 171 ----------QQQQAALQQQQQQQQQQQFQAQQSAMQ 197
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 54.7 bits (130), Expect = 2e-07
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 54 LIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPAS-----AP 108
LI+AGKIL D + + I + V +++ + Q +A +SP+ +S AP
Sbjct: 48 LIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
Query: 109 STTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSG------F 162
++ + P A+ S S S + SG PS G+ A +++++G
Sbjct: 108 TSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 163 GGILGLG--------SLGLGSANFMELQQQMQRQLMSNPE------MLSQIMENPLVQDM 208
I+ +G +L N + + + +PE SQ+ E P +
Sbjct: 168 TEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAA 227
Query: 209 MSNPDLMRHMIMANPQ---MQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQ 265
NP + PQ M+Q++++NP + P L++Q + NP ++Q++ R+Q
Sbjct: 228 GENP---LEFLRDQPQFQNMRQVIQQNPALL-----PALLQQLGQ--ENPQLLQQISRHQ 277
Query: 266 DRALSNLESIPG 277
++ + L PG
Sbjct: 278 EQFIQMLNEPPG 289
Score = 39.7 bits (91), Expect = 0.008
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 459 ILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSP 518
++T +A Q + T E+ P + G+S P + + S APT+SP
Sbjct: 75 MVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSP 134
Query: 519 ATPATSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANL 578
+ + S P+ SS +++ L+ GS ++ L ++ SMG+ RE +
Sbjct: 135 ESVSGSVPSSGSSGREE--DAASTLVTGS----------EYETMLTEIMSMGY-ERERVV 181
Query: 579 QALIATGGDINAAIERLL 596
AL A+ + + A+E LL
Sbjct: 182 AALRASYNNPHRAVEYLL 199
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 374 GSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGN 433
GS + Q + ENP ++ + P ++M Q + QNP ++ L N
Sbjct: 211 GSVQESQVSEQPATEAAGENP--LEFLRDQPQFQNMRQVIQQNPALLPALLQQ--LGQEN 266
Query: 434 PQLQEQLRLQLPVFLQQMQNP 454
PQL +Q+ F+Q + P
Sbjct: 267 PQLLQQISRHQEQFIQMLNEP 287
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 53.5 bits (127), Expect = 5e-07
Identities = 110/494 (22%), Positives = 166/494 (33%), Gaps = 100/494 (20%)
Query: 83 KTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGG 142
K+ DP A S T PA+ + P P Q + G S G S G
Sbjct: 73 KSQASVSDPMNALQSL--TGGPAAGAAGIGMPPRGPGQ--SLGGMGSLGAMGQPMSLSGQ 128
Query: 143 PSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMEN 202
P PG +P + A + + L L + QQQ Q Q + Q +
Sbjct: 129 PPPGTSGMAPHSMAVVSTATPQT----QLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQ 184
Query: 203 PLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHML-----NNPELMRQTMELARNPAM 257
Q + + Q QQL ++ + H++ N ++ +Q +L R +
Sbjct: 185 QQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQL 244
Query: 258 MQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSS 317
+ + Q + + AL+ Q PM +Q P +L
Sbjct: 245 QLQQQQQQQQQQQQQQQ-----QALQAQPPIQQPPM-----QQPQPPPSQALP----QQL 290
Query: 318 SQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGM 377
Q T++ +P P P P P + + + SQ P VS A G +
Sbjct: 291 QQMHHTQHHQPPPQPQQP-------PVAQNQPSQLPPQSQTQPLVSQA----QALPGQML 339
Query: 378 FNSPEMQ-----ALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAG 432
+ P ++ ++QQ PQ+ Q QT Q AAQM+ G
Sbjct: 340 YTQPPLKFVRAPMVVQQPPVQPQVQQQ-----------QTAVQTAQ-AAQMVA-----PG 382
Query: 433 NPQLQEQL-RLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLG 491
Q L L P QQ+Q P+S+ P + PG S
Sbjct: 383 VQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQP-----------------SPQPGQPSSQP 425
Query: 492 SFGISRTPAPSAGSNAGSTPEAPTSSPATPAT---------------------SSPTGAS 530
+ +S PAPS S S P+ SP T T SP G+S
Sbjct: 426 NSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSS 485
Query: 531 SA-QQQLMQQMIQL 543
A +QQ + ++ QL
Sbjct: 486 QAEEQQYLDKLKQL 499
Score = 29.6 bits (65), Expect = 8.3
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 485 GLVPSLGSFG--ISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQ 542
G + SLG+ G +S + P G++ + S ATP T + QQQ QQ Q
Sbjct: 111 GGMGSLGAMGQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQ 170
Query: 543 LLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQ 579
Q + QQQ +Q F +++ +Q
Sbjct: 171 ----------QQQQAALQQQQQQQQQQQFQAQQSAMQ 197
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 52.8 bits (125), Expect = 9e-07
Identities = 89/371 (23%), Positives = 147/371 (39%), Gaps = 53/371 (14%)
Query: 13 IRVTVKTPKDKE-EIVICDRASVKEFKEEISRRFKAQQDQLV---LIFAGKILKDGDTLN 68
++VT+KT + + +I I +VK KE+I + LI+AGKIL D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 69 QHGIKDGLTVHLVIKTPQKAQDPAAATA--SSPS-----------------TPDPASAPS 109
++ I + V +++ P+ PA AT S+P+ TP PA AP+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 110 TTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLG 169
+TPAS TPA +T+ S + A + + P+ SP+AT S SG L
Sbjct: 121 STPAS-ITPAS-ATASSEPAPASAAKQEKPAEKPAETPVATSPTATDS-TSGDSSRSNLF 177
Query: 170 SLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPD-LMRHMIMANP-QMQQ 227
+ + + M ++MS Q++ ++ +NPD + +++M P +
Sbjct: 178 EDATSALVTGQSYENMVTEIMSMGYEREQVI--AALRASFNNPDRAVEYLLMGIPGDRES 235
Query: 228 LMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGY--NALRRM 285
+P + P+ A A + + GG+ LR
Sbjct: 236 QAVVDPPQAASTGAPQSSAVAAAAATTTA-------------TTTTTSSGGHPLEFLR-- 280
Query: 286 YTDIQEPMFSAAREQFGNNP--FSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAP 343
+P F R+ NP +L + Q L+ ++ + P +A
Sbjct: 281 ----NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 344 GSGGEGTGGSG 354
G GG G GGSG
Sbjct: 337 GQGGGGGGGSG 347
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 496 SRTPAPSA-GSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQ-LLAGSGNSQVQ 553
S TP P G ++G++P + TP T+ L Q +Q L SG +Q
Sbjct: 286 SHTPTPGTQGHSSGTSPMSSGVQSGTPITND----------LFSQALQHALQASGQPSLQ 335
Query: 554 TPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIE 593
+ ++Q QL+QL MG + E +L+AL ATGGDI AA+E
Sbjct: 336 S---QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 35.4 bits (80), Expect = 0.15
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 54 LIFAGKILKDGDTLNQHGIKDGLTVHLVIKT-PQKAQDP 91
LI+ G+ LKD TL+ +GI+ G TVH++ K+ P+ Q P
Sbjct: 63 LIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKP 101
Score = 33.5 bits (75), Expect = 0.58
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 TASSPSTPDPASAPSTTPASPATPAQPST-SGSASSDAGSGSRRSSGGGPSPGAGEGSPS 153
T S+PS+ P+S P++ S A +P T S A++ A + + SS P+PG +G S
Sbjct: 240 TRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATALALASTPESSSHTPTPGT-QGHSS 298
Query: 154 ATASILSG 161
T+ + SG
Sbjct: 299 GTSPMSSG 306
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 496 SRTPAPSA-GSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQ-LLAGSGNSQVQ 553
S TP P G ++G++P + TP T+ L Q +Q L SG +Q
Sbjct: 286 SHTPTPGTQGHSSGTSPMSSGVQSGTPITND----------LFSQALQHALQASGQPSLQ 335
Query: 554 TPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIE 593
+ ++Q QL+QL MG + E +L+AL ATGGDI AA+E
Sbjct: 336 S---QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 35.4 bits (80), Expect = 0.15
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 54 LIFAGKILKDGDTLNQHGIKDGLTVHLVIKT-PQKAQDP 91
LI+ G+ LKD TL+ +GI+ G TVH++ K+ P+ Q P
Sbjct: 63 LIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKP 101
Score = 33.5 bits (75), Expect = 0.58
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 TASSPSTPDPASAPSTTPASPATPAQPST-SGSASSDAGSGSRRSSGGGPSPGAGEGSPS 153
T S+PS+ P+S P++ S A +P T S A++ A + + SS P+PG +G S
Sbjct: 240 TRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATALALASTPESSSHTPTPGT-QGHSS 298
Query: 154 ATASILSG 161
T+ + SG
Sbjct: 299 GTSPMSSG 306
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 51.2 bits (121), Expect = 3e-06
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 46/266 (17%)
Query: 5 SGAETRPPIRVTVKT-PKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKD 63
+ E + V VKT ++ + +VKEFKE I+ ++ LI+ G++L+D
Sbjct: 9 TAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 68
Query: 64 GDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPST 123
L ++ + G +HLV + P P T P+ A S T
Sbjct: 69 DKKLQEYNV-GGKVIHLVERAP-------------PQTHLPSGASSGT------------ 102
Query: 124 SGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQ 183
GSAS+ G GS + G PGA +A + ++ G + GS +++
Sbjct: 103 -GSASATHGGGSPPGTRG---PGASVHDRNANSYVMVGTFNLPSDGSA-------VDVHI 151
Query: 184 QMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPE 243
M++ + + + +M +++D+ + M PQ Q + P ++ PE
Sbjct: 152 NMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVT-----PE 206
Query: 244 ---LMRQTMELARNPAMMQEMMRNQD 266
L QT E + A +E M ++
Sbjct: 207 PVALSSQTSEPVESEAPPREPMEAEE 232
Score = 37.0 bits (84), Expect = 0.052
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 323 TENREPLPNPWSPSPP-----TSQAPG--SGGEGT-GGSGTSQVHP-----TVSNPFGIN 369
T+ P P P P PP T PG SGG G+ GG G + P V
Sbjct: 647 TQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSL 706
Query: 370 AASLGSGMFNSPEMQALLQQISENPQLMQNVISAP--YMRSMMQTLAQNPDFAAQMMVNV 427
SLG+ +S + A +Q++S + + + + +++ L QN M+ V
Sbjct: 707 LGSLGARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQN----FSMVDVV 762
Query: 428 PLFAGNPQLQEQLRLQLPVFLQ------QMQNPESLSILTNP---------RAMQALLQI 472
L G+ Q ++L+ QL F Q P ++ + T+ R +L+Q+
Sbjct: 763 MLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTPSNIRMATHTLITGLEEYVRESFSLVQV 822
Query: 473 QQGLQTLQT 481
Q G+ ++T
Sbjct: 823 QPGVDIIRT 831
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 468 ALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPS-AGSNAGSTPEAPTSSPAT--PATS 524
+L Q+ GL P LV G+ G++ PAP+ A ++AG+T A T+ PA PA
Sbjct: 530 SLAQMVSGLVGQLLMQPVLVAQ-GTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQP 588
Query: 525 SPT-GASSAQQQLMQQMIQLLA----GSGNSQVQTPEV 557
PT S A Q Q + LL G+G S V +P +
Sbjct: 589 PPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTI 626
Score = 34.7 bits (78), Expect = 0.26
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 44/223 (19%)
Query: 329 LPNPWSPSPPTSQAPGSGGE--GTGGSGTSQVHPTVSNPFGINAASLGSGMFNSP----- 381
LP+ S ++ A GG GT G G S VH +N + + G FN P
Sbjct: 94 LPSGASSGTGSASATHGGGSPPGTRGPGAS-VHDRNANSYVM------VGTFNLPSDGSA 146
Query: 382 -EMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQL 440
++ ++Q + ++ A +M +QTL + G PQ Q
Sbjct: 147 VDVHINMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECR-----------GGPQPQHS- 194
Query: 441 RLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPA 500
Q P P+ ++ P A+ + Q + +++EAP P R PA
Sbjct: 195 --QPP--------PQPPAVTPEPVALSS-----QTSEPVESEAPPREPMEAEEVEERAPA 239
Query: 501 PSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQL 543
+ G P PT +P T A + P+ A +++Q++ +L
Sbjct: 240 QNPELTPGPAPAGPTPAPETNAPNHPSPAEYV--EVLQELQRL 280
Score = 30.8 bits (68), Expect = 3.7
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 84 TPQKAQDPAAATASSPS----TPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSS 139
TP A PA ATAS+ + T A PA P QPS + S G+
Sbjct: 553 TPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQL-LGNLLGP 611
Query: 140 GGGPSPGAGEGSPSATASI 158
G + G+G SP+ T ++
Sbjct: 612 AGPGAGGSGVASPTITVAM 630
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 51.2 bits (121), Expect = 3e-06
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 46/266 (17%)
Query: 5 SGAETRPPIRVTVKT-PKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKD 63
+ E + V VKT ++ + +VKEFKE I+ ++ LI+ G++L+D
Sbjct: 9 TAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 68
Query: 64 GDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPST 123
L ++ + G +HLV + P P T P+ A S T
Sbjct: 69 DKKLQEYNV-GGKVIHLVERAP-------------PQTHLPSGASSGT------------ 102
Query: 124 SGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQ 183
GSAS+ G GS + G PGA +A + ++ G + GS +++
Sbjct: 103 -GSASATHGGGSPPGTRG---PGASVHDRNANSYVMVGTFNLPSDGSA-------VDVHI 151
Query: 184 QMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPE 243
M++ + + + +M +++D+ + M PQ Q + P ++ PE
Sbjct: 152 NMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVT-----PE 206
Query: 244 ---LMRQTMELARNPAMMQEMMRNQD 266
L QT E + A +E M ++
Sbjct: 207 PVALSSQTSEPVESEAPPREPMEAEE 232
Score = 37.0 bits (84), Expect = 0.052
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 323 TENREPLPNPWSPSPP-----TSQAPG--SGGEGT-GGSGTSQVHP-----TVSNPFGIN 369
T+ P P P P PP T PG SGG G+ GG G + P V
Sbjct: 647 TQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSL 706
Query: 370 AASLGSGMFNSPEMQALLQQISENPQLMQNVISAP--YMRSMMQTLAQNPDFAAQMMVNV 427
SLG+ +S + A +Q++S + + + + +++ L QN M+ V
Sbjct: 707 LGSLGARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQN----FSMVDVV 762
Query: 428 PLFAGNPQLQEQLRLQLPVFLQ------QMQNPESLSILTNP---------RAMQALLQI 472
L G+ Q ++L+ QL F Q P ++ + T+ R +L+Q+
Sbjct: 763 MLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTPSNIRMATHTLITGLEEYVRESFSLVQV 822
Query: 473 QQGLQTLQT 481
Q G+ ++T
Sbjct: 823 QPGVDIIRT 831
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 468 ALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPS-AGSNAGSTPEAPTSSPAT--PATS 524
+L Q+ GL P LV G+ G++ PAP+ A ++AG+T A T+ PA PA
Sbjct: 530 SLAQMVSGLVGQLLMQPVLVAQ-GTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQP 588
Query: 525 SPT-GASSAQQQLMQQMIQLLA----GSGNSQVQTPEV 557
PT S A Q Q + LL G+G S V +P +
Sbjct: 589 PPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTI 626
Score = 34.7 bits (78), Expect = 0.26
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 44/223 (19%)
Query: 329 LPNPWSPSPPTSQAPGSGGE--GTGGSGTSQVHPTVSNPFGINAASLGSGMFNSP----- 381
LP+ S ++ A GG GT G G S VH +N + + G FN P
Sbjct: 94 LPSGASSGTGSASATHGGGSPPGTRGPGAS-VHDRNANSYVM------VGTFNLPSDGSA 146
Query: 382 -EMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQL 440
++ ++Q + ++ A +M +QTL + G PQ Q
Sbjct: 147 VDVHINMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECR-----------GGPQPQHS- 194
Query: 441 RLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPA 500
Q P P+ ++ P A+ + Q + +++EAP P R PA
Sbjct: 195 --QPP--------PQPPAVTPEPVALSS-----QTSEPVESEAPPREPMEAEEVEERAPA 239
Query: 501 PSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQL 543
+ G P PT +P T A + P+ A +++Q++ +L
Sbjct: 240 QNPELTPGPAPAGPTPAPETNAPNHPSPAEYV--EVLQELQRL 280
Score = 30.8 bits (68), Expect = 3.7
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 84 TPQKAQDPAAATASSPS----TPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSS 139
TP A PA ATAS+ + T A PA P QPS + S G+
Sbjct: 553 TPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQL-LGNLLGP 611
Query: 140 GGGPSPGAGEGSPSATASI 158
G + G+G SP+ T ++
Sbjct: 612 AGPGAGGSGVASPTITVAM 630
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 51.2 bits (121), Expect = 3e-06
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 46/266 (17%)
Query: 5 SGAETRPPIRVTVKT-PKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKD 63
+ E + V VKT ++ + +VKEFKE I+ ++ LI+ G++L+D
Sbjct: 9 TAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 68
Query: 64 GDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPST 123
L ++ + G +HLV + P P T P+ A S T
Sbjct: 69 DKKLQEYNV-GGKVIHLVERAP-------------PQTHLPSGASSGT------------ 102
Query: 124 SGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQ 183
GSAS+ G GS + G PGA +A + ++ G + GS +++
Sbjct: 103 -GSASATHGGGSPPGTRG---PGASVHDRNANSYVMVGTFNLPSDGSA-------VDVHI 151
Query: 184 QMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPE 243
M++ + + + +M +++D+ + M PQ Q + P ++ PE
Sbjct: 152 NMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVT-----PE 206
Query: 244 ---LMRQTMELARNPAMMQEMMRNQD 266
L QT E + A +E M ++
Sbjct: 207 PVALSSQTSEPVESEAPPREPMEAEE 232
Score = 37.0 bits (84), Expect = 0.052
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 323 TENREPLPNPWSPSPP-----TSQAPG--SGGEGT-GGSGTSQVHP-----TVSNPFGIN 369
T+ P P P P PP T PG SGG G+ GG G + P V
Sbjct: 647 TQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSL 706
Query: 370 AASLGSGMFNSPEMQALLQQISENPQLMQNVISAP--YMRSMMQTLAQNPDFAAQMMVNV 427
SLG+ +S + A +Q++S + + + + +++ L QN M+ V
Sbjct: 707 LGSLGARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQN----FSMVDVV 762
Query: 428 PLFAGNPQLQEQLRLQLPVFLQ------QMQNPESLSILTNP---------RAMQALLQI 472
L G+ Q ++L+ QL F Q P ++ + T+ R +L+Q+
Sbjct: 763 MLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTPSNIRMATHTLITGLEEYVRESFSLVQV 822
Query: 473 QQGLQTLQT 481
Q G+ ++T
Sbjct: 823 QPGVDIIRT 831
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 468 ALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPS-AGSNAGSTPEAPTSSPAT--PATS 524
+L Q+ GL P LV G+ G++ PAP+ A ++AG+T A T+ PA PA
Sbjct: 530 SLAQMVSGLVGQLLMQPVLVAQ-GTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQP 588
Query: 525 SPT-GASSAQQQLMQQMIQLLA----GSGNSQVQTPEV 557
PT S A Q Q + LL G+G S V +P +
Sbjct: 589 PPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTI 626
Score = 34.7 bits (78), Expect = 0.26
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 44/223 (19%)
Query: 329 LPNPWSPSPPTSQAPGSGGE--GTGGSGTSQVHPTVSNPFGINAASLGSGMFNSP----- 381
LP+ S ++ A GG GT G G S VH +N + + G FN P
Sbjct: 94 LPSGASSGTGSASATHGGGSPPGTRGPGAS-VHDRNANSYVM------VGTFNLPSDGSA 146
Query: 382 -EMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQL 440
++ ++Q + ++ A +M +QTL + G PQ Q
Sbjct: 147 VDVHINMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECR-----------GGPQPQHS- 194
Query: 441 RLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPA 500
Q P P+ ++ P A+ + Q + +++EAP P R PA
Sbjct: 195 --QPP--------PQPPAVTPEPVALSS-----QTSEPVESEAPPREPMEAEEVEERAPA 239
Query: 501 PSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQL 543
+ G P PT +P T A + P+ A +++Q++ +L
Sbjct: 240 QNPELTPGPAPAGPTPAPETNAPNHPSPAEYV--EVLQELQRL 280
Score = 30.8 bits (68), Expect = 3.7
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 84 TPQKAQDPAAATASSPS----TPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSS 139
TP A PA ATAS+ + T A PA P QPS + S G+
Sbjct: 553 TPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQL-LGNLLGP 611
Query: 140 GGGPSPGAGEGSPSATASI 158
G + G+G SP+ T ++
Sbjct: 612 AGPGAGGSGVASPTITVAM 630
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 50.4 bits (119), Expect = 5e-06
Identities = 120/534 (22%), Positives = 178/534 (33%), Gaps = 85/534 (15%)
Query: 85 PQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRS----SG 140
P ++ P A A + S+P + S A+ + PS+S SASS + S +++ G
Sbjct: 217 PNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGG 276
Query: 141 GGPSPGAGEGSPSATA-----------SILSGFGGILG--------LGSLGLGSANFME- 180
GGPS AG G+P TA S G+ G G G G G A+
Sbjct: 277 GGPS-AAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQ 335
Query: 181 -----------------LQQQMQRQLMSNPEM---LSQIMENPLVQDMMSNPDLMRHMIM 220
QQ+ MS + P M MR
Sbjct: 336 CWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPY 395
Query: 221 --ANP-QMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESI-- 275
NP QQ P+ H QT + R P MQ ++ LS + I
Sbjct: 396 GGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQ--RYPMTMQGRAQSAMGGLSYTQQIPP 453
Query: 276 -----PGGYNAL-RRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDS----SSSQPLRTEN 325
P GY + Y + Q P + + P S S SQP + ++
Sbjct: 454 YGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQS 513
Query: 326 REPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQA 385
+P + PP Q+P T+Q HP P+ A SP Q
Sbjct: 514 SQPPYSQQPSQPPHQQSP---APYPSQQSTTQQHPQSQPPYSQPQA-------QSPYQQQ 563
Query: 386 LLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLP 445
QQ + + Q P + QT F ++ F +
Sbjct: 564 QPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-- 621
Query: 446 VFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGS 505
+ Q +LS+ + P ++ L L + TE L P + + GIS + S
Sbjct: 622 ---KGGQEDMNLSLQSRPSSLPDLSGSIDDL-PMGTEG-ALSPGVSTSGISSSQGEQ--S 674
Query: 506 NAGSTPEAPTSSPATPA----TSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTP 555
N +P +P +SP P + SP G+ ++ Q + A GN P
Sbjct: 675 NPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRP 728
Score = 32.7 bits (73), Expect = 0.98
Identities = 48/231 (20%), Positives = 73/231 (31%), Gaps = 9/231 (3%)
Query: 176 ANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNP---DLMRHMIMANPQMQQLMERN 232
A + Q Q+ S P ++P Q P L + PQ QQ +
Sbjct: 532 APYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTA 591
Query: 233 PEISHMLNNPELMRQTM--ELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQ 290
EL + + + + P+M +D LS L+S P L D+
Sbjct: 592 YSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLS-LQSRPSSLPDLSGSIDDLP 650
Query: 291 EPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGT 350
A + SS G + + P LP PSP +P S +
Sbjct: 651 MGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSR 710
Query: 351 GGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQ---ISENPQLMQ 398
G + P P + S M S ++ Q + NPQ+ Q
Sbjct: 711 SGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQ 761
Score = 29.6 bits (65), Expect = 8.3
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 86 QKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPS----TSGSASSDAGSGSRRSSGG 141
++A AAA A++ A+A + P QP G+ S+ G G SGG
Sbjct: 33 EEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGG 92
Query: 142 GP--------SPGAGEGSPSATASILSGFGGILGLGSLGLGS 175
GP S G P+ ++ GG G S G+G+
Sbjct: 93 GPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGA 134
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 50.4 bits (119), Expect = 5e-06
Identities = 120/534 (22%), Positives = 178/534 (33%), Gaps = 85/534 (15%)
Query: 85 PQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRS----SG 140
P ++ P A A + S+P + S A+ + PS+S SASS + S +++ G
Sbjct: 217 PNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGG 276
Query: 141 GGPSPGAGEGSPSATA-----------SILSGFGGILG--------LGSLGLGSANFME- 180
GGPS AG G+P TA S G+ G G G G G A+
Sbjct: 277 GGPS-AAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQ 335
Query: 181 -----------------LQQQMQRQLMSNPEM---LSQIMENPLVQDMMSNPDLMRHMIM 220
QQ+ MS + P M MR
Sbjct: 336 CWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPY 395
Query: 221 --ANP-QMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESI-- 275
NP QQ P+ H QT + R P MQ ++ LS + I
Sbjct: 396 GGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQ--RYPMTMQGRAQSAMGGLSYTQQIPP 453
Query: 276 -----PGGYNAL-RRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDS----SSSQPLRTEN 325
P GY + Y + Q P + + P S S SQP + ++
Sbjct: 454 YGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQS 513
Query: 326 REPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQA 385
+P + PP Q+P T+Q HP P+ A SP Q
Sbjct: 514 SQPPYSQQPSQPPHQQSP---APYPSQQSTTQQHPQSQPPYSQPQA-------QSPYQQQ 563
Query: 386 LLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLP 445
QQ + + Q P + QT F ++ F +
Sbjct: 564 QPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-- 621
Query: 446 VFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGS 505
+ Q +LS+ + P ++ L L + TE L P + + GIS + S
Sbjct: 622 ---KGGQEDMNLSLQSRPSSLPDLSGSIDDL-PMGTEG-ALSPGVSTSGISSSQGEQ--S 674
Query: 506 NAGSTPEAPTSSPATPA----TSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTP 555
N +P +P +SP P + SP G+ ++ Q + A GN P
Sbjct: 675 NPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRP 728
Score = 32.7 bits (73), Expect = 0.98
Identities = 48/231 (20%), Positives = 73/231 (31%), Gaps = 9/231 (3%)
Query: 176 ANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNP---DLMRHMIMANPQMQQLMERN 232
A + Q Q+ S P ++P Q P L + PQ QQ +
Sbjct: 532 APYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTA 591
Query: 233 PEISHMLNNPELMRQTM--ELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQ 290
EL + + + + P+M +D LS L+S P L D+
Sbjct: 592 YSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLS-LQSRPSSLPDLSGSIDDLP 650
Query: 291 EPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGT 350
A + SS G + + P LP PSP +P S +
Sbjct: 651 MGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSR 710
Query: 351 GGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQ---ISENPQLMQ 398
G + P P + S M S ++ Q + NPQ+ Q
Sbjct: 711 SGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQ 761
Score = 29.6 bits (65), Expect = 8.3
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 86 QKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPS----TSGSASSDAGSGSRRSSGG 141
++A AAA A++ A+A + P QP G+ S+ G G SGG
Sbjct: 33 EEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGG 92
Query: 142 GP--------SPGAGEGSPSATASILSGFGGILGLGSLGLGS 175
GP S G P+ ++ GG G S G+G+
Sbjct: 93 GPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGA 134
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 49.3 bits (116), Expect = 1e-05
Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 42/267 (15%)
Query: 5 SGAETRPPIRVTVKT-PKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKD 63
+ E + V VKT ++ + +VKEFKE I+ ++ LI+ G++L+D
Sbjct: 9 TAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 68
Query: 64 GDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPST 123
L ++ + G +HLV + P P T P+ A S T
Sbjct: 69 DKKLQEYNV-GGKVIHLVERAP-------------PQTHLPSGASSGT------------ 102
Query: 124 SGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQ 183
GSAS+ G GS + G PGA +A + ++ G + GS +++
Sbjct: 103 -GSASATHGGGSPPGTRG---PGASVHDRNANSYVMVGTFNLPSDGSA-------VDVHI 151
Query: 184 QMQRQLMSNPEMLSQIMENPLVQD---MMSNPDLMRHMIMANPQMQQLMERNPEISHMLN 240
M++ + + + +M +++D ++S + + ++ Q + P+ +
Sbjct: 152 NMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMETLPYLQCRGGPQPQHSQPPPQPPAVTP 211
Query: 241 NP-ELMRQTMELARNPAMMQEMMRNQD 266
P L QT E + A +E M ++
Sbjct: 212 EPVALSSQTSEPVESEAPPREPMEAEE 238
Score = 37.0 bits (84), Expect = 0.052
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 323 TENREPLPNPWSPSPP-----TSQAPG--SGGEGT-GGSGTSQVHP-----TVSNPFGIN 369
T+ P P P P PP T PG SGG G+ GG G + P V
Sbjct: 653 TQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSL 712
Query: 370 AASLGSGMFNSPEMQALLQQISENPQLMQNVISAP--YMRSMMQTLAQNPDFAAQMMVNV 427
SLG+ +S + A +Q++S + + + + +++ L QN M+ V
Sbjct: 713 LGSLGARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQN----FSMVDVV 768
Query: 428 PLFAGNPQLQEQLRLQLPVFLQ------QMQNPESLSILTNP---------RAMQALLQI 472
L G+ Q ++L+ QL F Q P ++ + T+ R +L+Q+
Sbjct: 769 MLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTPSNIRMATHTLITGLEEYVRESFSLVQV 828
Query: 473 QQGLQTLQT 481
Q G+ ++T
Sbjct: 829 QPGVDIIRT 837
Score = 36.6 bits (83), Expect = 0.068
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 38/223 (17%)
Query: 329 LPNPWSPSPPTSQAPGSGGE--GTGGSGTSQVHPTVSNPFGINAASLGSGMFNSP----- 381
LP+ S ++ A GG GT G G S VH +N + + G FN P
Sbjct: 94 LPSGASSGTGSASATHGGGSPPGTRGPGAS-VHDRNANSYVM------VGTFNLPSDGSA 146
Query: 382 -EMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQL 440
++ ++Q + ++ A +M +QTL + + G PQ Q
Sbjct: 147 VDVHINMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMETLPYLQCR-----GGPQPQHS- 200
Query: 441 RLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPA 500
Q P P+ ++ P A+ + Q + +++EAP P R PA
Sbjct: 201 --QPP--------PQPPAVTPEPVALSS-----QTSEPVESEAPPREPMEAEEVEERAPA 245
Query: 501 PSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQL 543
+ G P PT +P T A + P+ A +++Q++ +L
Sbjct: 246 QNPELTPGPAPAGPTPAPETNAPNHPSPAEYV--EVLQELQRL 286
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 468 ALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPS-AGSNAGSTPEAPTSSPAT--PATS 524
+L Q+ GL P LV G+ G++ PAP+ A ++AG+T A T+ PA PA
Sbjct: 536 SLAQMVSGLVGQLLMQPVLVAQ-GTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQP 594
Query: 525 SPT-GASSAQQQLMQQMIQLLA----GSGNSQVQTPEV 557
PT S A Q Q + LL G+G S V +P +
Sbjct: 595 PPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTI 632
Score = 30.8 bits (68), Expect = 3.7
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 84 TPQKAQDPAAATASSPS----TPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSS 139
TP A PA ATAS+ + T A PA P QPS + S G+
Sbjct: 559 TPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQL-LGNLLGP 617
Query: 140 GGGPSPGAGEGSPSATASI 158
G + G+G SP+ T ++
Sbjct: 618 AGPGAGGSGVASPTITVAM 636
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 47.8 bits (112), Expect = 3e-05
Identities = 121/572 (21%), Positives = 188/572 (32%), Gaps = 92/572 (16%)
Query: 41 ISRRFKAQQDQLVLIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPS 100
I ++ + QQ Q L A + + ++ + G+ G L TP P ++P
Sbjct: 1809 IKQKLRQQQLQHRLQQAQMLRRRMASMQRTGVV-GQQQGLPSPTPATPTTPTGQQPTTPQ 1867
Query: 101 TPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILS 160
TP P S P TP + P P T + G + + + P A P + +
Sbjct: 1868 TPQPTSQPQPTPPNSMPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVE 1927
Query: 161 GFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIM 220
I A+ Q+ +Q Q+ M M P M P M
Sbjct: 1928 MAMQIQRAAETQRQMAHVQIFQRPIQHQMPPMTPMAPMGMNPP---PMTRGPSGHLEPGM 1984
Query: 221 ANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQ-----------DRAL 269
MQQ + P L P+ ++ M PAMM Q +
Sbjct: 1985 GPTGMQQ---QPPWSQGGLPQPQQLQSGMP---RPAMMSVAQHGQPLNMAPQPGLGQVGI 2038
Query: 270 SNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSS----QPLRTEN 325
S L+ AL+ + ++ P ++Q S L N ++ + + N
Sbjct: 2039 SPLKPGTVSQQALQNLLRTLRSPSSPLQQQQV----LSILHANPQLLAAFIKQRAAKYAN 2094
Query: 326 REPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFN------ 379
P P P P P Q PG G +P + N + A +G+
Sbjct: 2095 SNPQPIPGQPGMPQGQ-PGLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQ 2153
Query: 380 --------SPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQM----MVNV 427
SP+ Q + + P ++++ M Q P M
Sbjct: 2154 LQPPMGGMSPQAQQMNMNHNTMPSQFRDILRRQQMMQQQQQQGAGPGIGPGMANHNQFQQ 2213
Query: 428 PLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAM------------QALLQIQQG 475
P G P Q+Q ++ +QQMQ I P+A+ Q LLQ Q G
Sbjct: 2214 PQGVGYPPQQQQ---RMQHHMQQMQQGNMGQIGQLPQALGAEAGASLQAYQQRLLQQQMG 2270
Query: 476 -------------LQTLQTEAPGL----VPSLGSFGISRTPAPSAGSNAGSTPEAPTSSP 518
+ Q ++P L +P+ S + R+P P S P + SP
Sbjct: 2271 SPVQPNPMSPQQHMLPNQAQSPHLQGQQIPNSLSNQV-RSPQPVPSPRPQSQPPHSSPSP 2329
Query: 519 ----------ATPATSSP-TGASSAQQQLMQQ 539
+P TSSP G +AQ M+Q
Sbjct: 2330 RMQPQPSPHHVSPQTSSPHPGLVAAQANPMEQ 2361
Score = 42.0 bits (97), Expect = 0.002
Identities = 81/346 (23%), Positives = 124/346 (35%), Gaps = 50/346 (14%)
Query: 86 QKAQDPAAATASSPSTP-DPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPS 144
Q+A T SPS+P S A+P A A+ A S + G
Sbjct: 2048 QQALQNLLRTLRSPSSPLQQQQVLSILHANPQLLAA-FIKQRAAKYANSNPQPIPG---Q 2103
Query: 145 PGAGEGSPSATASILSGFGGI------LGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQ 198
PG +G P + G G+ + + G QQQ Q+QL P M
Sbjct: 2104 PGMPQGQPGLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQ--PPMGGM 2161
Query: 199 IMENPLVQDMMSN----PDLMRHMIMANPQMQQLMERN--PEISHMLNNPELMRQTMELA 252
+P Q M N P R ++ MQQ ++ P I + N +Q +
Sbjct: 2162 ---SPQAQQMNMNHNTMPSQFRDILRRQQMMQQQQQQGAGPGIGPGMANHNQFQQPQGVG 2218
Query: 253 RNPAMMQEMMRN----QDRALSNLESIPGGYNA--------------LRRMYTDIQEPMF 294
P Q M + Q + + +P A ++M + +Q
Sbjct: 2219 YPPQQQQRMQHHMQQMQQGNMGQIGQLPQALGAEAGASLQAYQQRLLQQQMGSPVQPNPM 2278
Query: 295 SAAREQFGNNPFSS-LAGNS-DSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGG 352
S + N S L G +S S +R+ P P P S P +S +P + +
Sbjct: 2279 SPQQHMLPNQAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPS-- 2336
Query: 353 SGTSQVHPTVSNPF-GINAAS---LGSGMFNSPEMQALLQQISENP 394
V P S+P G+ AA + G F SP+ ++L Q++ NP
Sbjct: 2337 --PHHVSPQTSSPHPGLVAAQANPMEQGHFASPDQNSMLSQLASNP 2380
Score = 35.0 bits (79), Expect = 0.20
Identities = 79/326 (24%), Positives = 120/326 (36%), Gaps = 80/326 (24%)
Query: 330 PNPWSPSPPTSQAPGSGGEGT---------GGSGTSQVHPTVSNPFGINAASLGSGMFNS 380
P P + P PG G G G Q+ + P ++ A G + +
Sbjct: 1969 PPPMTRGPSGHLEPGMGPTGMQQQPPWSQGGLPQPQQLQSGMPRPAMMSVAQHGQPLNMA 2028
Query: 381 PEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQL 440
P Q L Q+ +P L +S ++++++TL ++P Q + + NPQL
Sbjct: 2029 P--QPGLGQVGISP-LKPGTVSQQALQNLLRTL-RSPSSPLQQQQVLSILHANPQL---- 2080
Query: 441 RLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPA 500
L F++Q + S NP+ + + QG LQ P +P G G+ PA
Sbjct: 2081 ---LAAFIKQRAAKYANS---NPQPIPGQPGMPQGQPGLQ---PPTMP--GQQGVHSNPA 2129
Query: 501 PS------AGSNAGSTPEAPTSSPATPATSSPTGASSAQ--------------------- 533
AG P+ P P G S Q
Sbjct: 2130 MQNMNPMQAGVQRAGLPQQQPQQQLQP----PMGGMSPQAQQMNMNHNTMPSQFRDILRR 2185
Query: 534 QQLMQQMIQLLAGSG-------NSQVQTP---------EVRFQQQLEQL--NSMGFINRE 575
QQ+MQQ Q AG G ++Q Q P + R Q ++Q+ +MG I +
Sbjct: 2186 QQMMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPPQQQQRMQHHMQQMQQGNMGQIGQL 2245
Query: 576 ANLQALIA-TGGDINAAIERLLGSQL 600
QAL A G + A +RLL Q+
Sbjct: 2246 P--QALGAEAGASLQAYQQRLLQQQM 2269
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 47.4 bits (111), Expect = 4e-05
Identities = 99/480 (20%), Positives = 169/480 (35%), Gaps = 79/480 (16%)
Query: 55 IFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSP-----STPDPASAPS 109
+ G ++ G T+ + ++ +I+TP Q A + SAP+
Sbjct: 2051 VITGPQIRPGMTVIRTPLQQSTLGKAIIRTPVMVQPGAPQQVMTQIIRGQPVSTAVSAPN 2110
Query: 110 TTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLG 169
T + TP Q S + SA+S + S S P G + + + + G GG GL
Sbjct: 2111 TVSS---TPGQKSLT-SATSTSNIQSSASQPPRPQQGQVKLTMAQLTQLTQGHGGNQGLT 2166
Query: 170 SLGLGSANFMELQQQMQRQLMSNP----EMLSQIMENPLVQDMMSNPDLM---------- 215
+ G Q + + + P +++ M N VQ + P
Sbjct: 2167 VVIQGQGQTTGQLQLIPQGVTVLPGPGQQLMQAAMPNGTVQRFLFTPLATTATTASTTTT 2226
Query: 216 -----------RHMIMANPQMQQLMERN--PEISHMLNNPELMRQTMELARNPAMMQEMM 262
+ +PQMQ ++ P S + E QT + + P +
Sbjct: 2227 TVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSSSVGPAEAQPQTAQPSAQPQPQTQPQ 2286
Query: 263 RNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFG--NNPFSSLAGNSDSSSSQP 320
+ + + ++ Q +++ Q + P S++ G S P
Sbjct: 2287 SPAQPEVQTQPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQSQPQSNVQGQSPVRVQSP 2346
Query: 321 LRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINA------ASLG 374
+T R PS P+ +PG SQV T S P I S G
Sbjct: 2347 SQTRIR--------PSTPSQLSPGQ---------QSQVQTTTSQPIPIQPHTSLQIPSQG 2389
Query: 375 SGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAA------------- 421
+ P++Q+ Q +S L Q +S+P R +Q P A
Sbjct: 2390 QPQ-SQPQVQSSTQTLSSGQTLNQVTVSSP-SRPQLQIQQPQPQVIAVPQLQQQVQVLSQ 2447
Query: 422 -QMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQ 480
Q V + A + +Q++LQLP+ +QQ ++ I N +QA +Q+ LQ +Q
Sbjct: 2448 IQSQVVAQIQAQQSGVPQQIKLQLPIQIQQSSAVQTHQI-QNVVTVQA-ASVQEQLQRVQ 2505
Score = 37.0 bits (84), Expect = 0.052
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 277 GGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPS 336
G LR + ++AA+ + P + L+ SSS+ R+P P P P+
Sbjct: 34 GPIGGLRSRHRGSSRGRWAAAQAEVA--PKTRLSSPRGGSSSR------RKPPPPP--PA 83
Query: 337 PPTSQAPGSGGEGTGGSGT 355
PP++ APG GG G GG T
Sbjct: 84 PPSTSAPGRGGRGGGGGRT 102
Score = 30.8 bits (68), Expect = 3.7
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 100 STPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGG 142
S+P S+ P P PA PSTS G G R+ GGG
Sbjct: 65 SSPRGGSSSRRKPPPPP-PAPPSTSAPGRGGRGGGGGRTGGGG 106
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 44.3 bits (103), Expect = 3e-04
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 80 LVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASP------ATPAQPSTSGSASSDAGS 133
L +T + AA TA+ STP + A +++ + P A +++G+ +S++
Sbjct: 322 LYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSG 381
Query: 134 GSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNP 193
G GGG G G G +T SG G + G LGSA+ Q ++P
Sbjct: 382 GGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSAS-----QSYSHTTRASP 436
Query: 194 EMLSQIMENPLVQDMMSNP 212
+ +++N + +S P
Sbjct: 437 ATVQWLLDNYETAEGVSLP 455
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 92 AAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGS 151
A + A P+ A+ P PA PA PA P+ + ++ AG G G GP PG G+ +
Sbjct: 134 AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPA---ALAARAGPGPGPGPGPGPGPGPGKPA 190
Query: 152 PSATASILSGFGGIL 166
A L+G +L
Sbjct: 191 GPGAAQTLNGSAALL 205
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 81 VIKTPQ---KAQDPAAATASSPSTP---DPASAPSTTPASPAT-------PAQPSTSGSA 127
VI+TP A PA A S P+ P PA+AP P +PAT PA P T+ A
Sbjct: 237 VIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPA 296
Query: 128 -SSDAGSGSRRSSGGGPSPGAGEGSPSATA 156
A + + S+G P+P G P+ +
Sbjct: 297 VPPPAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Score = 35.8 bits (81), Expect = 0.12
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 40/269 (14%)
Query: 310 AGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPT-VSNPFGI 368
+G + +++S + + LP+P + PP P +G G+ T + T + GI
Sbjct: 364 SGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGI 423
Query: 369 NAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYM---RSMMQTLAQNPDFA-AQMM 424
A + L Q +NP +QN P M RS L P A AQM
Sbjct: 424 RAT------LTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQ 477
Query: 425 VNVPLFAGNPQLQEQLRLQL-----PVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTL 479
PQ R PV + +Q P + I + Q+ Q T+
Sbjct: 478 AQA---HAQPQTTMAPRPATPTSAPPVQISTVQAPGTPIIARQVTPTTIIKQVSQAQTTV 534
Query: 480 QTEA-----PGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQ 534
Q A PG+ P L G ++T ++ G+ T +P + T +S+A +
Sbjct: 535 QPSATLQRSPGVQPQLVLGGAAQT------ASLGTATAVQTGTPQRTVPGATTTSSAATE 588
Query: 535 QL---------MQQMIQLLAGSGNSQVQT 554
+ + +I+ LA SG +T
Sbjct: 589 TMENVKKCKNFLSTLIK-LASSGKQSTET 616
Score = 34.7 bits (78), Expect = 0.26
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 84 TPQKAQDPAAATASSPSTPDPASAPSTTP---------ASPATPAQPSTSGSASSDAGSG 134
+P A PAA A++P P PA A P A+PA P P+ + + S +
Sbjct: 256 SPPAAPAPAAP-AAAPPPPPPAPATLARPPGHPAGPPTAAPAVP-PPAAAQNGGSAGAAP 313
Query: 135 SRRSSGGGPSPGAGEGSPSATAS 157
+ + GGP+ +G+ P A A+
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAA 336
Score = 33.1 bits (74), Expect = 0.75
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 91 PAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEG 150
PA ++P+ P PA+A + A A PA +G + +G ++ P+PG
Sbjct: 287 PAGPPTAAPAVPPPAAAQNGGSAG-AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAE 345
Query: 151 SP 152
SP
Sbjct: 346 SP 347
Score = 32.3 bits (72), Expect = 1.3
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 91 PAAATASSPSTPDPASA-PSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPG-AG 148
P P P P PA PA +P GSA S A + + GP P AG
Sbjct: 97 PGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAG 156
Query: 149 EGSPSATASILSGFG 163
P+ A++ + G
Sbjct: 157 PAKPAGPAALAARAG 171
Score = 32.0 bits (71), Expect = 1.7
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 481 TEAPGLVPSL-----GSFGISRTPAPSAGSNAG-STPEAPTSSPATPATSSPTGASSAQQ 534
T AP + P GS G + PAP+AG AG S P ++ A PA +
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 535 QLMQQMIQLLAGSG 548
Q Q LA SG
Sbjct: 352 QAAPPAAQTLAASG 365
Score = 30.0 bits (66), Expect = 6.4
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 79 HLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRS 138
HL +TP+ A A + + PA A PA+PA A G+A +G R
Sbjct: 42 HLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAP----GAAPEPPPAGRARP 97
Query: 139 SGGGP-----------------SPGAGEGSPSATAS 157
GGGP +P A + P S
Sbjct: 98 GGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGS 133
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 43.9 bits (102), Expect = 4e-04
Identities = 55/201 (27%), Positives = 72/201 (35%), Gaps = 25/201 (12%)
Query: 352 GSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQ----------------ISENPQ 395
GS Q P VS P I+ + + S E+ +Q I +P
Sbjct: 523 GSTGPQSIPAVSIPQSISQSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPV 582
Query: 396 LMQNVISAPYMRSMMQTLAQN--PDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQN 453
+ V SA + + +LAQ P A V PL P Q Q Q P+ QM
Sbjct: 583 NVVGVTSALGQQPSISSLAQPQLPYSQAAPPVQTPLPGAPPPQQLQYGQQQPMVSTQMAP 642
Query: 454 PESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEA 513
S+ NP + + Q LQT PS G T P A P
Sbjct: 643 GHVKSVTQNPAS-----EYVQQQPILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQ 697
Query: 514 PTSSPATPATSS--PTGASSA 532
PT+ PA PA +S P G + A
Sbjct: 698 PTAVPAQPAGASVQPVGQAPA 718
Score = 40.0 bits (92), Expect = 0.006
Identities = 87/417 (20%), Positives = 144/417 (34%), Gaps = 44/417 (10%)
Query: 151 SPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDM-- 208
S S++ S LS + +G G +G + ++ QQQ Q+Q P + ++
Sbjct: 469 SVSSSVSTLSHYTESVGSGEMGAPTV-VVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGP 527
Query: 209 MSNPDLMRHMIMANPQMQQLMERNPEISHMLNN---PELMRQTMELARNPAMMQEMMRNQ 265
S P + ++ Q+ Q+ ++ E+S+ P ++ TM A +
Sbjct: 528 QSIPAVSIPQSISQSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGV 587
Query: 266 DRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTEN 325
AL SI Q P AA P + QP+ +
Sbjct: 588 TSALGQQPSISS--------LAQPQLPYSQAAPPVQTPLPGAPPPQQLQYGQQQPMVSTQ 639
Query: 326 REP------LPNPWSP----SPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGS 375
P NP S P A SG + G G V+ P GI +
Sbjct: 640 MAPGHVKSVTQNPASEYVQQQPILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPT 699
Query: 376 GMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVP---LFAG 432
+ P A +Q + + P + V + + ++ Q A P Q VP + G
Sbjct: 700 AVPAQPA-GASVQPVGQAPAAVSAVPTGSQIANIGQQ-ANIPTAVQQPSTQVPPSVIQQG 757
Query: 433 NPQ------------LQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQ 480
P + + ++ P QQ+ S+LT P Q + + QG+ + Q
Sbjct: 758 APPSSQVVPPAQTGIIHQGVQTSAPSLPQQLVIASQSSLLTVPPQPQGVEPVAQGIVSQQ 817
Query: 481 TEAPGLVPSLGSFGISRTPAPSAGSNAGSTPE---APTSSPATPATSSPTGASSAQQ 534
A +PS S ++ + + S S P P + TPAT + S Q
Sbjct: 818 LPAVSSLPSASSISVTSQVSSTGPSGMPSAPTNLVPPQNIAQTPATQNGNLVQSVSQ 874
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 43.5 bits (101), Expect = 6e-04
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 91 PAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEG 150
P ++++SS + A PS+T +S T A P+ S A++ A S S P+P +G G
Sbjct: 201 PGSSSSSSSRSQSAAVTPSSTTSS--TRATPAPSAPAAASATSPS-------PAPSSGNG 251
Query: 151 SPSATASI----LSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQ 206
+ +A + LS IL ++ G A QQ+ + PE+++ I
Sbjct: 252 ASTAASPTQPIQLSDLQSILATMNVPAGPAG----GQQVDLASVLTPEIMAPI------- 300
Query: 207 DMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMR 246
++N D+ ++ P + L + EI + L +P+ +
Sbjct: 301 --LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQ 338
Score = 35.8 bits (81), Expect = 0.12
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 484 PGLVPSLGSFGI--SRTPAPSAGSNAGSTPEAPTSSP-ATPATSSPTGASSAQQQLMQQM 540
PGL LGS G S + + S +A TP + TSS ATPA S+P AS+
Sbjct: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPS- 247
Query: 541 IQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAA 591
+G+G S +P Q QL+ + I N+ A A G ++ A
Sbjct: 248 ----SGNGASTAASP-----TQPIQLSDLQSILATMNVPAGPAGGQQVDLA 289
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 480 QTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQ 539
++++ + PS + TPAPSA + A +T +P S A+++ + Q +Q
Sbjct: 210 RSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQS 269
Query: 540 MIQLL---AGSGNSQ------VQTPEV 557
++ + AG Q V TPE+
Sbjct: 270 ILATMNVPAGPAGGQQVDLASVLTPEI 296
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 43.5 bits (101), Expect = 6e-04
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 91 PAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEG 150
P ++++SS + A PS+T +S T A P+ S A++ A S S P+P +G G
Sbjct: 201 PGSSSSSSSRSQSAAVTPSSTTSS--TRATPAPSAPAAASATSPS-------PAPSSGNG 251
Query: 151 SPSATASI----LSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQ 206
+ +A + LS IL ++ G A QQ+ + PE+++ I
Sbjct: 252 ASTAASPTQPIQLSDLQSILATMNVPAGPAG----GQQVDLASVLTPEIMAPI------- 300
Query: 207 DMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMR 246
++N D+ ++ P + L + EI + L +P+ +
Sbjct: 301 --LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQ 338
Score = 35.8 bits (81), Expect = 0.12
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 484 PGLVPSLGSFGI--SRTPAPSAGSNAGSTPEAPTSSP-ATPATSSPTGASSAQQQLMQQM 540
PGL LGS G S + + S +A TP + TSS ATPA S+P AS+
Sbjct: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPS- 247
Query: 541 IQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAA 591
+G+G S +P Q QL+ + I N+ A A G ++ A
Sbjct: 248 ----SGNGASTAASP-----TQPIQLSDLQSILATMNVPAGPAGGQQVDLA 289
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 480 QTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQ 539
++++ + PS + TPAPSA + A +T +P S A+++ + Q +Q
Sbjct: 210 RSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQS 269
Query: 540 MIQLL---AGSGNSQ------VQTPEV 557
++ + AG Q V TPE+
Sbjct: 270 ILATMNVPAGPAGGQQVDLASVLTPEI 296
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 43.5 bits (101), Expect = 6e-04
Identities = 108/524 (20%), Positives = 173/524 (33%), Gaps = 114/524 (21%)
Query: 108 PSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPG---AGEGSPSATASILSGFGG 164
PSTT +P P + + G G GP G P+ L G G
Sbjct: 534 PSTTATTPGNSGAPQLQANQNVQHAGGQ----GAGPPQNQMQVSHGPPNMMQPSLMGIHG 589
Query: 165 ILG---LGSLGLGSANFMELQQQMQR----QLMS----------------------NPEM 195
+ G+ G+ N +Q Q Q+ QLM NP +
Sbjct: 590 NMNNQQAGTSGVPQVNLSNMQGQPQQGPPSQLMGMHQQIVPSQGQMVQQQGTLNPQNPMI 649
Query: 196 LS--------QIMENPLVQDMMSNPDLMR----------------HMIMANPQMQQLMER 231
LS Q+M NP Q++ +P M H M PQ Q L+++
Sbjct: 650 LSRAQLMPQGQMMVNPPSQNLGPSPQRMTPPKQMLSQQGPQMMAPHNQMMGPQGQVLLQQ 709
Query: 232 NPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLES--IPGGYNALRRMYTDI 289
NP I ++ N +M N+ + + +S +PG +R ++
Sbjct: 710 NPMIEQIMTN------------------QMQGNKQQFNTQNQSNVMPGPAQIMRGPTPNM 751
Query: 290 QEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEG 349
Q M + G G ++S SQ + + + + P PSP +Q G
Sbjct: 752 QGNMVQFTGQMSGQ--MLPQQGPVNNSPSQVMGIQGQ--VLRPPGPSPHMAQQHGDPATT 807
Query: 350 TGGS-GTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVIS--APYM 406
SQ+ P V S+ P +QA+ + + +S AP+
Sbjct: 808 ANNDVSLSQMMPDV---------SIQQTNMVPPHVQAMQGNSASGNHFSGHGMSFNAPFS 858
Query: 407 ---RSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNP 463
+ QNP F VN + +P L L+ + + N ++ + P
Sbjct: 859 GAPNGNQMSCGQNPGFP----VNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTNANKP 914
Query: 464 RAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAG-----STPEAPTSSP 518
+ + + + Q L T P G+ P G S P+ P S
Sbjct: 915 KKKKPPRKKKNSQQDLNT------PDTRPAGLEEADQPPLPGEQGINLDNSGPKLPEFSN 968
Query: 519 ATPATSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQ 562
P S QQ+ Q++Q +A Q P+ + QQ
Sbjct: 969 RPPGYPSQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQ 1012
Score = 41.2 bits (95), Expect = 0.003
Identities = 62/247 (25%), Positives = 86/247 (34%), Gaps = 38/247 (15%)
Query: 303 NNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTV 362
N P +S Q L T + P + PP PG G SG P
Sbjct: 912 NKPKKKKPPRKKKNSQQDLNTPDTRPAGLEEADQPPL---PGEQGINLDNSGPKL--PEF 966
Query: 363 SNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQ 422
SN G + P Q LQQ+ PQLMQ+V P Q Q P Q
Sbjct: 967 SNR--------PPGYPSQPVEQRPLQQMP--PQLMQHVAPPP-QPPQQQPQPQLP----Q 1011
Query: 423 MMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTE 482
P Q Q+Q + Q+ + L Q+P+S+ + + + Q + +
Sbjct: 1012 QQQPPPPSQPQSQQQQQQQQQMMMMLMMQQDPKSVRLPVSQNVHPPRGPLNPDSQRMPMQ 1071
Query: 483 APGLVPSLGSF----------GISRTPAP---SAGSNA-----GSTPEAPTSSPATPATS 524
G VP + S R P P GSN+ +P+ P+SSP S
Sbjct: 1072 QSGSVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKMVYQESPQNPSSSPLAEMAS 1131
Query: 525 SPTGASS 531
P + S
Sbjct: 1132 LPEASGS 1138
Score = 31.6 bits (70), Expect = 2.2
Identities = 52/267 (19%), Positives = 98/267 (36%), Gaps = 57/267 (21%)
Query: 210 SNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRAL 269
S P ++ ++P +QQ+ E NP+ + N + T+ +++ M+ ++ N +
Sbjct: 1745 SPPCTSSPVVPSHPPVQQVKELNPDEASPQVNTSADQNTLPSSQSTTMVSPLLTNSPGSS 1804
Query: 270 SNLESIPGGYNALRRMYTDIQEPMFSAA-----------REQFGNNPFSSLAGNSDSS-- 316
N S P + + I + + + A EQ+G + + G ++
Sbjct: 1805 GNRRS-PVSSSKGKGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGQGLDTTAPG 1863
Query: 317 --SSQPLRTENREPLPNPWSP------SPPTSQAPGSGGEGTGGSG-------------- 354
++ L TE P P +P S P S G G
Sbjct: 1864 LMGTEQLSTELDSKTPTPPAPTLLKMTSSPVGPGTASAGPSLPGGALPTSVRSIVTTLVP 1923
Query: 355 ---TSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLM------QNVISAPY 405
S V T SN GI + SL G+ +++ +P+L+ QN++S
Sbjct: 1924 SELISAVPTTKSNHGGIASESLAGGLVE--------EKVGSHPELLPSIAPSQNLVSKET 1975
Query: 406 MRSMMQTLAQNPDFAAQMMVNVPLFAG 432
+ +Q P ++ VN + +G
Sbjct: 1976 STTALQASVARP----ELEVNAAIVSG 1998
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 43.1 bits (100), Expect = 7e-04
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 82 IKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQP------STSGSASSDAGSGS 135
I TP PA A +P TP P + P T P PA P P + S +A S G+G+
Sbjct: 727 IPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGT 786
Query: 136 -----RRSSGGGPSPGAGEGSPSAT 155
++ G P P A +G P T
Sbjct: 787 AAPAPSQTPGSAPPPQA-QGPPYPT 810
Score = 30.0 bits (66), Expect = 6.4
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 89 QDPAAATASSPSTPDPA--SAP----STTPASPA----TPAQPSTSGSASSDAGSGSRRS 138
Q A S+PS P PA S+P + TP +PA P +P +R
Sbjct: 715 QQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAP 774
Query: 139 SGGGPSP-GAGEGSPS 153
S PSP GAG +P+
Sbjct: 775 SATAPSPVGAGTAAPA 790
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 43.1 bits (100), Expect = 7e-04
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 82 IKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQP------STSGSASSDAGSGS 135
I TP PA A +P TP P + P T P PA P P + S +A S G+G+
Sbjct: 722 IPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGT 781
Query: 136 -----RRSSGGGPSPGAGEGSPSAT 155
++ G P P A +G P T
Sbjct: 782 AAPAPSQTPGSAPPPQA-QGPPYPT 805
Score = 30.0 bits (66), Expect = 6.4
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 89 QDPAAATASSPSTPDPA--SAP----STTPASPA----TPAQPSTSGSASSDAGSGSRRS 138
Q A S+PS P PA S+P + TP +PA P +P +R
Sbjct: 710 QQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAP 769
Query: 139 SGGGPSP-GAGEGSPS 153
S PSP GAG +P+
Sbjct: 770 SATAPSPVGAGTAAPA 785
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 78 VHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRR 137
+H V P AQ P P TP + ST PA P T AQP SG+A+S GS
Sbjct: 471 LHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAAS---GGSIA 527
Query: 138 SSGGGPSP 145
P P
Sbjct: 528 GGSSCPLP 535
Score = 32.0 bits (71), Expect = 1.7
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 477 QTLQTEAPGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQL 536
Q LQ + P L G TPAPS S TP+ PT P AT+ P S Q
Sbjct: 178 QMLQAQPPALQAPTGV-----TPAPS--SAPPGTPQLPTPGPTPSATAVPPQGSPTASQA 230
Query: 537 MQQ 539
Q
Sbjct: 231 PNQ 233
Score = 30.4 bits (67), Expect = 4.9
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 18 KTPKDKEEIVICDRASVKEFK-EEISRRFKAQQDQLVLIFAGKILKDGDTLNQHGIKDGL 76
K D EE DR S K+ K +EISR + + + + +G + + +D
Sbjct: 99 KVASDTEE---ADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNR 155
Query: 77 TVHLVIKTPQKAQD--------------PAAATASSPSTPDPASAPSTTPASPATPAQPS 122
+ I +PQ + P A A + TP P+SAP TP P TP P+
Sbjct: 156 STSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLP-TPG-PT 213
Query: 123 TSGSASSDAGSGSRRSSGGGP 143
S +A GS + + P
Sbjct: 214 PSATAVPPQGSPTASQAPNQP 234
Score = 29.6 bits (65), Expect = 8.3
Identities = 63/267 (23%), Positives = 89/267 (33%), Gaps = 45/267 (16%)
Query: 335 PSPPTSQAPGSGGEGTGGSGTSQV-----HPTVSNPFGI------NAASLGSG------- 376
PS P+ P G+G G + Q HP PFG+ A LG+
Sbjct: 282 PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPH 341
Query: 377 -MFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPD---FAAQMMVNVPLFAG 432
P Q+ LQ S+ P Q + AP ++ P A Q + P +G
Sbjct: 342 TSLQLPASQSALQ--SQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSG 399
Query: 433 NPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQI---QQGLQTLQTEAPGLV-- 487
L P L+ + SLS P A LQ+ Q L + + PGL
Sbjct: 400 PSPFSMNANLPPPPALKPL---SSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQS 456
Query: 488 ----------PSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLM 537
P G ++ P P A P + P P+TS+P Q
Sbjct: 457 QNLPPPPASHPPTGLHQVAPQP-PFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPP 515
Query: 538 QQMIQLLAGS--GNSQVQTPEVRFQQQ 562
GS G S P V+ +++
Sbjct: 516 CSGAAASGGSIAGGSSCPLPTVQIKEE 542
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.125 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,605,966
Number of Sequences: 37866
Number of extensions: 1473884
Number of successful extensions: 29078
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 1003
Number of HSP's that attempted gapping in prelim test: 17090
Number of HSP's gapped (non-prelim): 11080
length of query: 601
length of database: 18,247,518
effective HSP length: 108
effective length of query: 493
effective length of database: 14,157,990
effective search space: 6979889070
effective search space used: 6979889070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.