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Search of human proteins with 40254997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40254997 hypothetical protein LOC84985 isoform a [Homo
sapiens]
(434 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens] 885 0.0
gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens] 689 0.0
gi|30425394 hypothetical protein LOC128876 [Homo sapiens] 251 7e-67
gi|157311635 FAM83H [Homo sapiens] 170 3e-42
gi|156564372 hypothetical protein LOC113828 [Homo sapiens] 161 9e-40
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 158 1e-38
gi|115392150 hypothetical protein LOC644815 [Homo sapiens] 157 1e-38
gi|61676089 hypothetical protein LOC222584 [Homo sapiens] 157 2e-38
gi|153251792 hypothetical protein LOC54854 [Homo sapiens] 145 7e-35
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 48 2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 2e-04
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 43 6e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 42 8e-04
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 42 8e-04
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 42 8e-04
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens] 42 0.001
gi|206597502 NESH protein isoform 2 [Homo sapiens] 42 0.001
gi|7705981 NESH protein isoform 1 [Homo sapiens] 42 0.001
gi|157168329 formin 1 [Homo sapiens] 42 0.001
gi|110431370 espin [Homo sapiens] 42 0.001
gi|31543543 retinoic acid induced 17 [Homo sapiens] 42 0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 0.001
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 0.001
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 42 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 41 0.002
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 41 0.002
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 41 0.002
gi|126090909 engrailed homeobox 1 [Homo sapiens] 41 0.002
gi|239754329 PREDICTED: hypothetical protein XP_002345954 [Homo ... 41 0.002
>gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]
Length = 434
Score = 885 bits (2288), Expect = 0.0
Identities = 434/434 (100%), Positives = 434/434 (100%)
Query: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV
Sbjct: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
Query: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS
Sbjct: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
Query: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE
Sbjct: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
Query: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI
Sbjct: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
Query: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK
Sbjct: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
Query: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAA 360
SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAA
Sbjct: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAA 360
Query: 361 PHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQLGLVPRL 420
PHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQLGLVPRL
Sbjct: 361 PHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQLGLVPRL 420
Query: 421 TPTWRPFLQASPHF 434
TPTWRPFLQASPHF
Sbjct: 421 TPTWRPFLQASPHF 434
>gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens]
Length = 367
Score = 689 bits (1778), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV
Sbjct: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
Query: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS
Sbjct: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
Query: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE
Sbjct: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
Query: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI
Sbjct: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
Query: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK
Sbjct: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
Query: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP 344
SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP
Sbjct: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP 344
>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
Length = 747
Score = 251 bits (642), Expect = 7e-67
Identities = 157/415 (37%), Positives = 225/415 (54%), Gaps = 36/415 (8%)
Query: 8 GKIRKRLEDVKSQWVRPARA-DFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSV 66
G +R R+E++K W R + +E+ARLA DALL+ G AY RV+S+E E+ FLS++
Sbjct: 17 GPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEERELPFLSAL 76
Query: 67 EAQYIQAQAREPPCPPDTLGGAEAGPKGLDS-SSLQSGTYFPVASEGSEPALLHSWASAE 125
+ Y+ + R P + G +GP L S + SGTYFP+AS+ P L W
Sbjct: 77 DVDYMTSHVRGGPELSEAQGQEASGPDRLSLLSEVTSGTYFPMASDIDPPDLDLGWPEVP 136
Query: 126 KPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKR 185
+ + A V+FQ K NI+DL+R ++ V+ ++MD+FTD+E+ CD++EA+++R
Sbjct: 137 QATGFSPTQAVVHFQRDKAKNIKDLLRFLFSQAHTVVAVVMDIFTDMELLCDLMEASSRR 196
Query: 186 GVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFI 245
GV V +LL Q ++ F EMC K+ ++ HL N+ +RS G+ YC+K+GR+F GQ EKF+
Sbjct: 197 GVPVYLLLAQEHLRHFLEMCYKMDLNGEHLPNMRVRSTCGDTYCSKAGRRFTGQALEKFV 256
Query: 246 ISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGL------ 299
+ D V++GSYSFTWLC H +++ + G+ VE FD EFR LYA S+PV G
Sbjct: 257 LIDCEQVVAGSYSFTWLCSQAHTSMVLQLRGRIVEDFDREFRCLYAESQPVEGFCGGEDP 316
Query: 300 KSPRLVAPVPPGAAPANGRLSSSSGSASDRTS-----SNPFSGRSA-------GSHPGTR 347
SPR + P PP A + S + S TS +P GRS+ G T
Sbjct: 317 LSPRALRP-PPVALAFRPDVPSPTSSLPSSTSLSSIKQSPLMGRSSYLALPGGGDCSDTG 375
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLG 402
VS+S GP A G PS LS H PP +NLG
Sbjct: 376 VVSSSLGPARREAS---------------GQPSLHRQLSDPNHGSPPGLYRANLG 415
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 170 bits (430), Expect = 3e-42
Identities = 130/410 (31%), Positives = 192/410 (46%), Gaps = 60/410 (14%)
Query: 33 ESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAGP 92
E RLA DAL +GGSEAY R L+ EG DFL E +++ R P
Sbjct: 26 EYYRLAVDALAEGGSEAYSRFLATEGAPDFLCPEELEHVSRHLRPPQYVTREPPEGSLLD 85
Query: 93 KGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHNN--IRDL 150
+D SS GTY+PV S+ + P L W + + + T Q ++ I+D
Sbjct: 86 VDMDGSS---GTYWPVNSDQAVPELDLGWPLT---FGFQGTEVTTLVQPPPPDSPSIKDE 139
Query: 151 VRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQI 210
RR I QV+ ++MD+FTDV++ ++LEAA +R V V +LLD+ + F +M DK ++
Sbjct: 140 ARRMIRSAQQVVAVVMDMFTDVDLLSEVLEAAARR-VPVYILLDEMNAQHFLDMADKCRV 198
Query: 211 SDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNI 270
+ H+ + +R+V G Y ++G+ F G ++EKF++ D V+SGSYSF W +HR++
Sbjct: 199 NLHHVDFLRVRTVAGPTYYCRTGKSFKGHVKEKFLLVDCAVVMSGSYSFMWSFEKIHRSL 258
Query: 271 LSKFTGQAVELFDEEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRT 330
F G+ V FDEEFR L+A S+P+ VP AA A D
Sbjct: 259 AHVFQGELVSSFDEEFRILFAQSEPL-----------VPSAAALAR----------MDAY 297
Query: 331 SSNPFSGRSAGSHPGTRSVSASSGPCSPAAPH---PPPPP-------------------- 367
+ P++G AG G V A + P H PPP
Sbjct: 298 ALAPYAG--AGPLVGVPGVGAPTPFSFPKRAHLLFPPPREEGLGFPSFLDPDRHFLSAFR 355
Query: 368 RFQPHQGPWGAPSPQAHLSP-----RPHDGPPAAVYSNLGAYRPTRLQLE 412
R +P + P GA P A L P GP + G ++ L+++
Sbjct: 356 REEPPRMPGGALEPHAGLRPLSRRLEAEAGPAGELAGARGFFQARHLEMD 405
>gi|156564372 hypothetical protein LOC113828 [Homo sapiens]
Length = 500
Score = 161 bits (408), Expect = 9e-40
Identities = 108/284 (38%), Positives = 157/284 (55%), Gaps = 12/284 (4%)
Query: 22 VRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQA--QAREPP 79
V A+A F E R A +ALL GG +AY L +E DFLSS E Q ++A E
Sbjct: 18 VTEAQAAFYYCERRRAALEALLGGGEQAYRERLKEEQLRDFLSSPERQALRAAWSPYEDA 77
Query: 80 CPP-DTLGGAEAGPKGLDSSSLQSG---TYFPVASEGSEPALLHSWASAEKPYLKEKSSA 135
P + G ++A K + +SG Y+P S+ P L W + + + S
Sbjct: 78 VPAANARGKSKAKAKAPAPAPAESGESLAYWPDRSDTEVPPLDLGWT--DTGFYRGVSRV 135
Query: 136 TVYFQTVKHN---NIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVL 192
T++ K +++ +VR+ I + +V+ ++MD+FTD +IF DI++AA KR V V ++
Sbjct: 136 TLFTHPPKDEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYII 195
Query: 193 LDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFV 252
LD+ GVK F EMC +Q++D ++NI +RSV G + GR G + +F++ D V
Sbjct: 196 LDEAGVKYFLEMCQDLQLTDFRIRNIRVRSVTGVGFYMPMGR-IKGTLSSRFLMVDGDKV 254
Query: 253 LSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPV 296
+GSY FTW HV RN+L TGQ VE FD EFR LYA S+ V
Sbjct: 255 ATGSYRFTWSSSHVDRNLLLLLTGQNVEPFDTEFRELYAISEEV 298
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 158 bits (399), Expect = 1e-38
Identities = 100/280 (35%), Positives = 149/280 (53%), Gaps = 10/280 (3%)
Query: 32 NESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAG 91
+ES RLA + L+ GG EA+ L +E FL+ E I +A E P A A
Sbjct: 59 SESRRLALEELVAGGPEAFAAFLRRERLARFLNPDEVHAI-LRAAERPGEEGAAAAAAAE 117
Query: 92 PKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHNN----- 146
S SGTYFP S+ P L W + + + + +FQ
Sbjct: 118 DSFGSSHDCSSGTYFPEQSDLEPPLLELGWPAFYQGAYRGATRVETHFQPRGAGEGGPYG 177
Query: 147 IRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCD 206
+D +R+ + +V+ ++MDVFTD++IF D+ E K+GV V +LLDQ + F +MC
Sbjct: 178 CKDALRQQLRSAREVIAVVMDVFTDIDIFRDLQEICRKQGVAVYILLDQALLSQFLDMCM 237
Query: 207 KVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHV 266
+++ K +++R++ G IY A+SG K G++ EKF + D V +GSYSFTW G +
Sbjct: 238 DLKVHPEQEKLMTVRTITGNIYYARSGTKIIGKVHEKFTLIDGIRVATGSYSFTWTDGKL 297
Query: 267 HRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSPRLVA 306
+ + L +GQ VE FD EFR LYA SKP+ SP+L++
Sbjct: 298 NSSNLVILSGQVVEHFDLEFRILYAQSKPI----SPKLLS 333
>gi|115392150 hypothetical protein LOC644815 [Homo sapiens]
Length = 823
Score = 157 bits (398), Expect = 1e-38
Identities = 106/317 (33%), Positives = 165/317 (52%), Gaps = 23/317 (7%)
Query: 14 LEDVKSQW-VRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYI- 71
L+D W ++ +F +E RLA +AL+ G +A++ VL +E DFLS +E + I
Sbjct: 9 LDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELKRIL 68
Query: 72 -----------QAQAREPPCPPDTLG---GAEA-GPKG--LDSSSLQSGTYFPVASEGSE 114
+ P P+ G G EA G G +++ L S Y+P S+ S
Sbjct: 69 ETIEVYDPGSEDPRGTGPSQGPEDNGVGDGEEASGADGVPIEAEPLPSLEYWPQKSDRSI 128
Query: 115 PALLHSWASAEKPYLKEKSSATVYFQTVKHN--NIRDLVRRCITRTSQVLVILMDVFTDV 172
P L W + + A+VY Q +I+++VR+ I++ +V+ ++MD+FTDV
Sbjct: 129 PQLDLGWPDTIA--YRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVIAVVMDMFTDV 186
Query: 173 EIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKS 232
+IF D+L+A KR V V +++D+ VK F MC++ + HLKN+ +RS G + +S
Sbjct: 187 DIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERACMHLGHLKNLRVRSSGGTEFFTRS 246
Query: 233 GRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYAS 292
KF G + +KF+ D + GSYSFTW RN++S +GQ VE+FD +F+ LY
Sbjct: 247 ATKFKGALAQKFMFVDGDRAVCGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLM 306
Query: 293 SKPVMGLKSPRLVAPVP 309
S V P P P
Sbjct: 307 SHSVSLKGIPMEKEPEP 323
>gi|61676089 hypothetical protein LOC222584 [Homo sapiens]
Length = 1011
Score = 157 bits (397), Expect = 2e-38
Identities = 107/317 (33%), Positives = 157/317 (49%), Gaps = 24/317 (7%)
Query: 36 RLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGL 95
R+A D L++ G EAY L QE DFL+ E YI ++ A++ G
Sbjct: 29 RVAIDILIEHGLEAYQEFLVQERVSDFLAEEEINYILKNVQKV---------AQSTAHGT 79
Query: 96 DSS---SLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHN------N 146
D S +L SGTY+PV S+ P L W PY+ + + H
Sbjct: 80 DDSCDDTLSSGTYWPVESDVEAPNLDLGW-----PYVMPGLLGGTHIDLLFHPPRAHLLT 134
Query: 147 IRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCD 206
I++ +R+ I +V+ ++MD+FTDV+IF +I+EA+ RGV V +LLD+ F M +
Sbjct: 135 IKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEAST-RGVSVYILLDESNFNHFLNMTE 193
Query: 207 KVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHV 266
K S L+NI +R+V+G+ Y +K+G KF G++ +KF++ D + V+ GSYS+ W
Sbjct: 194 KQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKA 253
Query: 267 HRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSA 326
H +++ TGQ VE FDEEFR LYA S A NG S S
Sbjct: 254 HLSMVQIITGQLVESFDEEFRTLYARSCVPSSFAQEESARVKHGKALWENGTYQHSVSSL 313
Query: 327 SDRTSSNPFSGRSAGSH 343
+ +S GR H
Sbjct: 314 ASVSSQRNLFGRQDKIH 330
>gi|153251792 hypothetical protein LOC54854 [Homo sapiens]
Length = 478
Score = 145 bits (366), Expect = 7e-35
Identities = 107/358 (29%), Positives = 173/358 (48%), Gaps = 9/358 (2%)
Query: 25 ARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDT 84
A F +E RLA +ALL G+EA+ + +E FLS+ E Q + A A +
Sbjct: 21 ASPGFLYSEGQRLALEALLSKGAEAFQTCVQREELWPFLSADEVQGLAAAAEDWTVAKQE 80
Query: 85 LGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKH 144
G G D + S +Y+P SE P L W K + A +Y Q
Sbjct: 81 PSGMAEGATTTDVDA-GSLSYWPGQSEQPAPVLRLGWPVDSA--WKGITRAQLYTQPPGE 137
Query: 145 NN--IRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQ 202
+++LVR I +++ ++MDVFTD ++ D+++AA +R V V +LLD+ + F
Sbjct: 138 GQPPLKELVRLEIQAAHKLVAVVMDVFTDPDLLLDLVDAATRRWVPVYLLLDRQQLPAFL 197
Query: 203 EMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWL 262
E+ ++ ++ + +N+ +R V G + ++ R+ +G +REKF++ D V+SGSYSFTW
Sbjct: 198 ELAQQLGVNPWNTENVDVRVVRGCSFQSRWRRQVSGTVREKFVLLDGERVISGSYSFTWS 257
Query: 263 CGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGL--KSPRLVAPVPPGAAPANGRLS 320
+HR +++ TG+ V+ F EFR LYA+S P+ + P ++ + G +P
Sbjct: 258 DARLHRGLVTLLTGEIVDAFSLEFRTLYAASCPLPPAPPQKPSVIGGLQRGRSPHRVSRR 317
Query: 321 SSSGSASDRTSSNPFSGRSAGSH--PGTRSVSASSGPCSPAAPHPPPPPRFQPHQGPW 376
S AS P + R A P T + S S P P +P + W
Sbjct: 318 RSVAPASPPPPDGPLAHRLAACRVSPATPGPALSDILRSVQRARTPSGPPARPSRSMW 375
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 48.1 bits (113), Expect = 2e-05
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 289 LYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRS 348
L AS++P SP +P P A A+ ++S+S +A +S+P + + +
Sbjct: 317 LPASAQPPAAA-SPSAASP-PLATAAAHTAIASASTTAP---ASSPADSPRPQASSYSPA 371
Query: 349 VSASSGPCS-------PAAPHPPP---------PPRFQPHQGPWGAPSPQAHLSPRPHDG 392
V+ASS P + PAAP P P P +QP +PSP A+ SP P+
Sbjct: 372 VAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPYTP 431
Query: 393 PPAAVY--SNLGAYRPTRLQLEQLGLVPRLTPTWRPFLQASP 432
PA Y S AY P+ + P TP+ P +P
Sbjct: 432 SPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAP 473
Score = 34.3 bits (77), Expect = 0.23
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPP 365
AP P + S ++ +P G + P T S + + P A P P
Sbjct: 390 APAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPYTPSPAPAYTPSPAPAYTPSP 449
Query: 366 PPRFQPHQGPWGAPSPQAHLSPRP---HDGPPA 395
P + P P PSP + +P P + G PA
Sbjct: 450 VPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPA 482
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/95 (33%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 307 PVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPP 366
P PPGAA G L G S P + PG V GP P P PP
Sbjct: 713 PGPPGAAGTPG-LQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPG 771
Query: 367 PRFQP-HQGPWGAP------SPQAHLSPRPHDGPP 394
P QP +G GAP P+ R GPP
Sbjct: 772 PAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Score = 37.7 bits (86), Expect = 0.021
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSG----PCSPAAP 361
AP G A NG + G A +R + P R A PG V G P SP P
Sbjct: 487 APGFRGPAGPNG-IPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 362 HPPPPPRFQPHQGPWGAPSPQAHLSPRPHDG 392
P QG G P P PR G
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQPG 576
Score = 34.7 bits (78), Expect = 0.17
Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPP 365
AP P G G + P + + GS PG + G PA P P
Sbjct: 1084 APGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS-PGPAGQQGAIGSPGPAGPRGPV 1142
Query: 366 PPRFQP-------HQGPWGAPSPQAHLSPRPHDGPP 394
P P H GP G P P+ + R +G P
Sbjct: 1143 GPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178
Score = 32.3 bits (72), Expect = 0.86
Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 307 PVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPP 366
P PPG+ +GR G + R + G + G P P P P
Sbjct: 551 PGPPGSQGESGR-PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERG--GPGGPGPQGP 607
Query: 367 PRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
P GP G P P + GPP
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 307 PVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPP 366
P PGAA A G + SD P +AG PG+ GP + P
Sbjct: 311 PGLPGAAGARG---NDGARGSDGQPGPPGPPGTAG-FPGSPGAKGEVGPAGSPGSNGAP- 365
Query: 367 PRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
G G P PQ H + GPP
Sbjct: 366 -------GQRGEPGPQGHAGAQGPPGPP 386
Score = 31.6 bits (70), Expect = 1.5
Identities = 27/107 (25%), Positives = 31/107 (28%), Gaps = 26/107 (24%)
Query: 307 PVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCS--------- 357
P PPG +G + DR S P A G+R GP
Sbjct: 1049 PGPPGPV-------GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERG 1101
Query: 358 ----------PAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
P P P P QG G+P P P GPP
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPP 1148
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 310 PGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSG-PCSPAAPHPPPPPR 368
PG A G + S D TS +P G G R S G P P P PP PP
Sbjct: 1133 PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPR-GNRGERGSEGSPGHPGQPGPPGPP- 1190
Query: 369 FQPHQGPWGAPSP 381
GAP P
Sbjct: 1191 --------GAPGP 1195
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 309 PPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPPPR 368
PPG A G +G + + G PG SGP P P R
Sbjct: 805 PPGPAGFPGA-PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGER 863
Query: 369 FQPHQGPWGAPSPQAHLSPRP-----HDGPP 394
P GP A P A P P + GPP
Sbjct: 864 GSP-GGPGAAGFPGARGLPGPPGSNGNPGPP 893
Score = 30.0 bits (66), Expect = 4.3
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 354 GPCSPAAPHPPPPPRFQPHQGPWGAPSPQ------AHLSPRPHDGPPAAV 397
GP P P PP PP H G G+P Q P GPP A+
Sbjct: 174 GPAGP--PGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAI 221
Score = 29.6 bits (65), Expect = 5.6
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 309 PPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPPPR 368
P GAA GR G +P G + PG SG P PP P
Sbjct: 517 PRGAAGEPGRDGVPGGPGMRGMPGSP-GGPGSDGKPGPPGSQGESG-----RPGPPGP-- 568
Query: 369 FQPHQGPWGAPSPQAHLSPRPHDGPP 394
GP G P P+ +DG P
Sbjct: 569 ----SGPRGQPGVMGFPGPKGNDGAP 590
Score = 28.9 bits (63), Expect = 9.5
Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPP 365
AP PG A G + S G A R P PG S GP P P
Sbjct: 1117 APGSPGPAGQQGAIGSP-GPAGPRGPVGP------SGPPGKDGTSGHPGPIGP-----PG 1164
Query: 366 PPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGA 403
P + +G G+P P G P +GA
Sbjct: 1165 PRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGA 1202
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 43.1 bits (100), Expect = 5e-04
Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 306 APVPPGAAPANGRLSSSSGS--------ASDRTSSNPFSGRSAGSHPGTRSVSASSGPCS 357
AP PP AP++ S SSGS A T + + SA R+ + G
Sbjct: 40 APPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTAL 99
Query: 358 PAAPHPPP--PPRFQPHQGPWGAPSPQAHLSPRP 389
A PPP PP P GP G SP+ SP P
Sbjct: 100 RAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLP 133
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 42.7 bits (99), Expect = 6e-04
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 307 PVPPGAAPANGRLSSSSGSASDRTSSNPFSGR-SAGSHPGTRSVSASSGPCSPAAPHPPP 365
P PPG P G +P +G +G P R P PHP P
Sbjct: 295 PFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP--------PPGMPHPGP 346
Query: 366 PPRFQPHQGPWGAPSPQAHLSPRPHD---GPPAAV--YSNLGAYRPTRLQLEQLGLVPRL 420
PP P +GP SP H P P GPP + + G RP Q G +P
Sbjct: 347 PPMGMPPRGP-PFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGY-QRGPLPPP 404
Query: 421 TPTWRP 426
PT RP
Sbjct: 405 RPTPRP 410
Score = 32.3 bits (72), Expect = 0.86
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 289 LYASSKPVMGLKSP-RLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTR 347
L A+ P+ P +L A PP + N + SS GS P GS P
Sbjct: 194 LLAAQNPLSQADRPHQLFADAPPPPSAPNP-VVSSLGSGLPPPGMPP-----PGSFPPPV 247
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQA----HLSPRPHDGPPAAV 397
+ P P A PPP P GP A +P A H PH PP +
Sbjct: 248 PPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGM 301
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 42.4 bits (98), Expect = 8e-04
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 299 LKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCS- 357
L++P V P P A P +L + G T+ P +A P + P +
Sbjct: 187 LQAPTGVTPAPSSAPPGTPQLPTP-GPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTH 245
Query: 358 -----------PAAPHPPPP----PRFQPHQGPWGAPSPQAHLSPRPH-DGPP 394
P +PHPPP P QP G G PS +H P H GPP
Sbjct: 246 IQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPP 298
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 295 PVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSN-PFSGRSAGSHPGTRSVSASS 353
P++ P +PP A+ L +S +A TS P S + S R
Sbjct: 307 PLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPP 366
Query: 354 GPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGP-PAAVYSNL 401
P A PH PPP Q P+PQAH P GP P ++ +NL
Sbjct: 367 APL--AMPHIKPPPTTPIPQ----LPAPQAHKHPPHLSGPSPFSMNANL 409
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 42.4 bits (98), Expect = 8e-04
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 299 LKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCS- 357
L++P V P P A P +L + G T+ P +A P + P +
Sbjct: 741 LQAPTGVTPAPSSAPPGTPQLPTP-GPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTH 799
Query: 358 -----------PAAPHPPPP----PRFQPHQGPWGAPSPQAHLSPRPH-DGPP 394
P +PHPPP P QP G G PS +H P H GPP
Sbjct: 800 IQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPP 852
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 295 PVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSN-PFSGRSAGSHPGTRSVSASS 353
P++ P +PP A+ L +S +A TS P S + S R
Sbjct: 861 PLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPP 920
Query: 354 GPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGP-PAAVYSNL 401
P A PH PPP Q P+PQAH P GP P ++ +NL
Sbjct: 921 APL--AMPHIKPPPTTPIPQ----LPAPQAHKHPPHLSGPSPFSMNANL 963
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 42.4 bits (98), Expect = 8e-04
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 299 LKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCS- 357
L++P V P P A P +L + G T+ P +A P + P +
Sbjct: 741 LQAPTGVTPAPSSAPPGTPQLPTP-GPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTH 799
Query: 358 -----------PAAPHPPPP----PRFQPHQGPWGAPSPQAHLSPRPH-DGPP 394
P +PHPPP P QP G G PS +H P H GPP
Sbjct: 800 IQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPP 852
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 295 PVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSN-PFSGRSAGSHPGTRSVSASS 353
P++ P +PP A+ L +S +A TS P S + S R
Sbjct: 861 PLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPP 920
Query: 354 GPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGP-PAAVYSNL 401
P A PH PPP Q P+PQAH P GP P ++ +NL
Sbjct: 921 APL--AMPHIKPPPTTPIPQ----LPAPQAHKHPPHLSGPSPFSMNANL 963
>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
Length = 617
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 348 SVSASSGPCS-------PAAPHPPP---------PPRFQPHQGPWGAPSPQAHLSPRPHD 391
+V+ASS P + PAAP P P P +QP +PSP A+ SP P+
Sbjct: 261 AVAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPYT 320
Query: 392 GPPAAVY--SNLGAYRPTRLQLEQLGLVPRLTPTWRPFLQASP 432
PA Y S AY P+ + P TP+ P +P
Sbjct: 321 PSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAP 363
Score = 34.3 bits (77), Expect = 0.23
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPP 365
AP P + S ++ +P G + P T S + + P A P P
Sbjct: 280 APAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPYTPSPAPAYTPSPAPAYTPSP 339
Query: 366 PPRFQPHQGPWGAPSPQAHLSPRP---HDGPPA 395
P + P P PSP + +P P + G PA
Sbjct: 340 VPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPA 372
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 42.0 bits (97), Expect = 0.001
Identities = 42/125 (33%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 300 KSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPA 359
+ PR+ PV P +GRLS++S SAS S+ S G P + +A P P+
Sbjct: 178 RPPRIPEPVHLPVVP-DGRLSAAS-SASSLASAG--SAEGVGGAPTPKGQAAPPAPPLPS 233
Query: 360 APHPPPPPR----FQ--PHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQ 413
+ PPPPP FQ P P P L P P D PP P L ++
Sbjct: 234 SLDPPPPPAAVEVFQRPPTLEELSPPPPDEEL-PLPLDLPP-----------PPPLDGDE 281
Query: 414 LGLVP 418
LGL P
Sbjct: 282 LGLPP 286
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 42.0 bits (97), Expect = 0.001
Identities = 42/125 (33%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 300 KSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPA 359
+ PR+ PV P +GRLS++S SAS S+ S G P + +A P P+
Sbjct: 184 RPPRIPEPVHLPVVP-DGRLSAAS-SASSLASAG--SAEGVGGAPTPKGQAAPPAPPLPS 239
Query: 360 APHPPPPPR----FQ--PHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQ 413
+ PPPPP FQ P P P L P P D PP P L ++
Sbjct: 240 SLDPPPPPAAVEVFQRPPTLEELSPPPPDEEL-PLPLDLPP-----------PPPLDGDE 287
Query: 414 LGLVP 418
LGL P
Sbjct: 288 LGLPP 292
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 285 EFRHLYASSKPVMGLKSPRLVA-PVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSH 343
+ + ++A+ +P+ G+ S + A P PP + P L S GS S P S +
Sbjct: 623 DHKDIHAALQPMEGMASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVS--AGPPL 680
Query: 344 PGTRSVSASSGPCSPAAPHPPPPPRFQPHQ-------GPWGAPSPQAHLSPRPHDGPPAA 396
P P S A P PPPPP P+ GP AP P P PP
Sbjct: 681 PPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPP-----PPPG 735
Query: 397 VYSNLGA 403
++ LG+
Sbjct: 736 LFFGLGS 742
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 292 SSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP--GTRSV 349
+ +P G+ SP V P N LSS + + S+ S + G HP G S
Sbjct: 347 AKQPDSGMSSPNTTVSVQP----LNFDLSSPTSTLSNYDSCSSSHSSIKGQHPPCGLSSA 402
Query: 350 SASS----------------GPCSPAAPHPPPPPRFQPHQGPWGA---PSPQAHLSPRPH 390
A+ G P PPPPP F P P G P P + +P+P
Sbjct: 403 RAADIQSYMDMLNPELGLPRGTIGKPTP-PPPPPSFPPPPPPPGTQLPPPPPGYPAPKPP 461
Query: 391 DGPPAA 396
GP AA
Sbjct: 462 VGPQAA 467
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 41.6 bits (96), Expect = 0.001
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 334 PFSGRSAGSHPGTRS------VSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSP 387
P +G S HP + S+ SGP + PPPPP P Q P APS H
Sbjct: 947 PHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPPPSQPPRQPPQAAPSSHPHSDL 1006
Query: 388 RPHDGPPAAVYSNLGAYRPTRLQLEQLGLVPRLT 421
P +A+ GA + + L L+P LT
Sbjct: 1007 T--FNPSSALEGQAGAQGASDMPEPSLDLLPELT 1038
Score = 29.3 bits (64), Expect = 7.3
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 292 SSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRS-VS 350
S V+G P+ PG P AS T+SNP G ++ G + S
Sbjct: 177 SQSQVLGNPMANANNPMNPGGNPM----------ASGMTTSNP--GLNSPQFAGQQQQFS 224
Query: 351 ASSGPCSPAAPHPPPPPRFQPHQGPWGA-----PSPQAHLSPRPHDGPPA 395
A +GP P P G +GA P+ A + PH PPA
Sbjct: 225 AKAGPAQPYIQQSMYGRPNYPGSGGFGASYPGGPNAPAGMGIPPHTRPPA 274
Score = 28.9 bits (63), Expect = 9.5
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 293 SKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSAS 352
S P MG+ PR PPG +P G+ R + G S P
Sbjct: 361 SGPPMGMNQPR-----PPGISPF--------GTHGQRMPQQTYPGPRPQSLPIQNIKRPY 407
Query: 353 SGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLE 412
G + P +F G + AP+P L+ + G + G Y P + +
Sbjct: 408 PGEPNYGNQQYGPNSQFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQYPPPTVNMG 467
Query: 413 Q 413
Q
Sbjct: 468 Q 468
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/101 (36%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPG---TRSVSASSGPCS 357
S + V PG AP G +S SA T P SG GS PG T + +S P
Sbjct: 106 SSKPVVAQGPGPAPGVGSAPPASSSAPPATP--PTSGAPPGSGPGPTPTPPPAVTSAP-- 161
Query: 358 PAAPHPPPPPRFQPHQGPW--GAPSPQAHL---SPRPHDGP 393
P AP P PP P P G P P A + P P GP
Sbjct: 162 PGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP 202
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 324 GSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQA 383
G D S P G + P + G P P PPPPP Q Q P P PQ
Sbjct: 26 GGLHDFRSPPPGMGLNQNRGP----MGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ- 80
Query: 384 HLSPRPHDGPP 394
P PH PP
Sbjct: 81 --QPPPHQPPP 89
Score = 35.0 bits (79), Expect = 0.13
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 331 SSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPH 390
SS P + G PG S +S S A P PP P GP P+P ++ P
Sbjct: 106 SSKPVVAQGPGPAPGVGSAPPAS---SSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPP 162
Query: 391 DGPP 394
PP
Sbjct: 163 GAPP 166
Score = 33.5 bits (75), Expect = 0.39
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 292 SSKPVMGL---------KSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSA-- 340
SSKPV+ +P + PP P +G + GS T + P + SA
Sbjct: 106 SSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSG---APPGSGPGPTPTPPPAVTSAPP 162
Query: 341 GSHPGTRSVSA-------SSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGP 393
G+ P T S + GP P A P P P + GP G + P+P GP
Sbjct: 163 GAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGP 222
Score = 31.2 bits (69), Expect = 1.9
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 355 PCSPAAPHPPP---PPRFQPHQGPWGAPSPQAHLSPRPHDGPPAA 396
P P PPP PP QPHQ P PQ P GP A
Sbjct: 74 PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPA 118
Score = 30.4 bits (67), Expect = 3.3
Identities = 38/148 (25%), Positives = 48/148 (32%), Gaps = 18/148 (12%)
Query: 288 HLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTR 347
H + S P MGL R P+ PG G + + P P +
Sbjct: 29 HDFRSPPPGMGLNQNR--GPMGPGP-----------GQSGPKPPIPPPPPHQQQQQPPPQ 75
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDG---PPAAVYSNLGAY 404
P PHP P + QP P + P P P G P A S A
Sbjct: 76 QPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPAT 135
Query: 405 RPTRLQLEQLGLVPRLTPTWRPFLQASP 432
PT G P TPT P + ++P
Sbjct: 136 PPT--SGAPPGSGPGPTPTPPPAVTSAP 161
Score = 29.6 bits (65), Expect = 5.6
Identities = 23/91 (25%), Positives = 25/91 (27%)
Query: 302 PRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAP 361
P V PPGA P S + P G PG + GP P
Sbjct: 154 PPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP 213
Query: 362 HPPPPPRFQPHQGPWGAPSPQAHLSPRPHDG 392
P P P G P P P G
Sbjct: 214 GGPKPGGGPGLSTPGGHPKPPHRGGGEPRGG 244
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 41.6 bits (96), Expect = 0.001
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPP 365
AP PP A P + + + S + + P + G + S P PAA PP
Sbjct: 939 APTPPAATPPSPK--GGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAAT-PPS 995
Query: 366 PPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRP 406
P P GAP+P A P P G PAA GA P
Sbjct: 996 PKGGPATPSPKGAPTPPAVTPPSP-KGSPAATPFPKGASTP 1035
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 298 GLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSG------RSAGSHPGTRSVSA 351
G +P P P +PA L + + T +P G + A + P S
Sbjct: 1031 GASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSP 1090
Query: 352 SSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
GP +P+ P PP P PSP+ L+ PH G P
Sbjct: 1091 KGGPATPSPKGAPMPPAATP-------PSPKGGLATPPHKGAP 1126
Score = 40.0 bits (92), Expect = 0.004
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPP 365
AP PP A P + L + + + NP + + S G + S G +P A PP
Sbjct: 1263 APTPPAATPPS--LKGGLATPPHKGAPNP-AVVTPPSPKGGPATSPPKGAPTPPAATPPS 1319
Query: 366 PPRFQPHQGPWGAPSPQAHLSPRPHDGP--PAAVYSNLGAYRPTRLQLEQLGLVPRLTPT 423
P P GAP+P A P P P PA S+ G PT ++ P TP+
Sbjct: 1320 PKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGG--PTTPSSKEGPTPPAATPS 1377
Score = 39.7 bits (91), Expect = 0.005
Identities = 42/145 (28%), Positives = 53/145 (36%), Gaps = 19/145 (13%)
Query: 296 VMGLKSPRLVAPVP-PGAAPANGRLSSSSGSASDRTSSNPF----SGRSAGSHPGTRSVS 350
V+ L P+ P P APA SSS A + S + A + P S
Sbjct: 890 VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPS 949
Query: 351 ASSGPCSPAAPHPPPPPRFQPHQ--------GPWGAPSPQAHLSPRPHDGPPAAVYSNLG 402
GP +P+ P PP P P GAP+P A P P GP A S G
Sbjct: 950 PKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGP--ATPSPKG 1007
Query: 403 AYRPTRLQLEQLGLVPRLTPTWRPF 427
A P + P+ +P PF
Sbjct: 1008 APTPPAVTPPS----PKGSPAATPF 1028
Score = 38.5 bits (88), Expect = 0.012
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 295 PVMGLKSPRLV-APVPPGAAPANGRLSSSSGSASDR------TSSNPFSGRSAGSHPGTR 347
P G +P L AP PP A P + + ++ S T +P G + H G
Sbjct: 1067 PKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAP 1126
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
+ A++ P SP PPP+ P PSP+ L+ P G P
Sbjct: 1127 TTPAATPP-SPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAP 1172
Score = 38.1 bits (87), Expect = 0.016
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPA---APH 362
AP PP A P S G A+ S + A + P S GP +P+ AP
Sbjct: 962 APTPPAATPP----SPKGGPATP-------SPKGAPTPPAATPPSPKGGPATPSPKGAPT 1010
Query: 363 P----PPPPRFQPHQGPW--GAPSPQAHLSPRPHDGPPA 395
P PP P+ P P+ GA +P A P P P A
Sbjct: 1011 PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAA 1049
Score = 37.0 bits (84), Expect = 0.035
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 298 GLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSG-------RSAGSHPGTRSVS 350
G +P V P P +PA + + T +P + A + P S
Sbjct: 1007 GAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPS 1066
Query: 351 ASSGPCSPAAPHPPPPPRFQPHQ--------GPWGAPSPQAHLSPRPHDG 392
GP +P+ P PP P P GAP P A P P G
Sbjct: 1067 PKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116
Score = 36.2 bits (82), Expect = 0.060
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 295 PVMGLKSPRLVAPVP-PGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASS 353
P M + SP+ +P P APA + SS AS + P + + A S A +
Sbjct: 1551 PAMTVPSPKKTPAIPTPKEAPA----TPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVT 1606
Query: 354 GPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRP------HDGP--PAAVYSNLGAYR 405
P AP PP P +GP P+P+ + P D P PA+V +GA
Sbjct: 1607 SPSPKEAPTPPAVTPPSPEKGP-ATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATV 1665
Query: 406 P 406
P
Sbjct: 1666 P 1666
Score = 35.8 bits (81), Expect = 0.078
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTS----SNPFSGRSAGSHPGTRSVSASSGPCSPAAP 361
+P+ +P R + GSA T S+P S A P S+S SPA
Sbjct: 795 SPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLP-ENSLSFQGSKDSPATT 853
Query: 362 HPPPPPRFQPHQGPWGAPSPQA--HLSPRPHDGPP 394
H P PP P GAP+P A LSP+ PP
Sbjct: 854 HSPTPP------SPKGAPTPSAVTPLSPKGVTLPP 882
Score = 35.8 bits (81), Expect = 0.078
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 295 PVMGLKSPRLV-APVPPGAAPAN--GRLSSSSGSASDRTSS----NPFSGRSAGSHPGTR 347
P GL +P AP P A P + G L++ S + T + +P G + S G
Sbjct: 1182 PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAP 1241
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
+ A++ P SP PPP+ P PS + L+ PH G P
Sbjct: 1242 TTPAATPP-SPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAP 1287
Score = 35.4 bits (80), Expect = 0.10
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 288 HLYASSKPVMGLKSPR--LVAPVPPGA--APANGRLSSSSGSASDRTSSNPFSGRSAGSH 343
H A + P SP+ L P P GA PA S G A+ P + +
Sbjct: 1122 HKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1181
Query: 344 P--GTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDG 392
P G + S P +PAA PP P P GAP+ A P P G
Sbjct: 1182 PKGGLATPSPKGAPTTPAAT-PPSPKGGLATPSPKGAPTTPAATPPSPKGG 1231
Score = 35.0 bits (79), Expect = 0.13
Identities = 37/118 (31%), Positives = 46/118 (38%), Gaps = 25/118 (21%)
Query: 291 ASSKPVMGLKSPR--LVAPVPPGA--APANGRLSSSSGSASDRTSSNPFSGRSAGSHPGT 346
A + P SP+ L P P GA PA S G A+ S + A + P
Sbjct: 1194 APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP-------SPKGAPTTPAA 1246
Query: 347 RSVSASSGPCSP---AAPHPP--PPPRFQ------PHQGPWGAPSPQAHLSPRPHDGP 393
S GP +P AP PP PP + PH+ GAP+P P P GP
Sbjct: 1247 TPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHK---GAPNPAVVTPPSPKGGP 1301
Score = 32.7 bits (73), Expect = 0.66
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 306 APVPPGAAPAN--GRLSSSSGSASDRTSS----NPFSGRSAGSHPGTRSVSASSGPCSPA 359
AP+PP A P + G L++ + T + +P G + G + A++ P SP
Sbjct: 1102 APMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPP-SPK 1160
Query: 360 APHPPPPPRFQPHQGPWGAPSPQAHL-SPRPHDGP--PAA 396
PPP+ P PSP+ L +P P P PAA
Sbjct: 1161 GGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1200
Score = 31.2 bits (69), Expect = 1.9
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 295 PVMGLKSPRLVAPVPPGAAPANGRLSSSS--GSASDRTSSNPFSGRSAGSHPGTRSVSAS 352
P G +P V P P P + SS G + + P + SH G +++
Sbjct: 1328 PPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPP 1387
Query: 353 SGPCSPAAPHPPPPPR------FQPHQGPWGAPSPQAHLSPRPHDGPPAAV 397
S PA P P P P + P + + +P D P AV
Sbjct: 1388 SPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAV 1438
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 345 GTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
G SSGP P PP P Q H GP G P PQ HL P+ GPP
Sbjct: 691 GPPGPQGSSGPQGHMGPQGPPGP--QGHIGPQGPPGPQGHLGPQ---GPP 735
Score = 36.2 bits (82), Expect = 0.060
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 345 GTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGP--PAAVYSNLG 402
G + + GP P P PP P Q GP G PQ P+ H GP P +LG
Sbjct: 673 GPQGMQRHPGPHGPLGPQGPPGP--QGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLG 730
Query: 403 AYRPTRLQ 410
P Q
Sbjct: 731 PQGPPGTQ 738
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 351 ASSGPCSPAAPHPPPPPRFQPHQGPWGAP------SPQAHLSPRPHDGPPAAVYSNLGAY 404
A GP P PP P+ Q GP G P PQ + P+ GPP + +
Sbjct: 615 AQMGPPGPQGQFRPPGPQGQ--MGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMH 672
Query: 405 RPTRLQ 410
P +Q
Sbjct: 673 GPQGMQ 678
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 302 PRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAP 361
P + P+P AAP + PF G +A P S A+ P +PAA
Sbjct: 222 PAALLPLPKPAAPGTV------------IQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAA 269
Query: 362 HPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGA 403
PPPPP P G P+ +P PP A N G+
Sbjct: 270 PPPPPPAPATLARPPGHPAGPPTAAPAV---PPPAAAQNGGS 308
Score = 33.9 bits (76), Expect = 0.30
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 341 GSH--PGTRSVSASSGPCSPA------APHPPPPPRFQPHQG---PWGAPSPQAHLSPRP 389
G+H G+ + +A +GP +PA AP PPP R +P G G PSP+ L P
Sbjct: 59 GNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVP-A 117
Query: 390 HDGPPAA 396
PPAA
Sbjct: 118 GPAPPAA 124
Score = 30.4 bits (67), Expect = 3.3
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 291 ASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSH---PGTR 347
A P G P P PG P+ R +G A P SAGS P
Sbjct: 86 APEPPPAGRARPGGGGPQRPGP-PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAA 144
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPA 395
+V+A P P P GP P P P P G PA
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP--GPGPGPGKPA 190
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 41.2 bits (95), Expect = 0.002
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 309 PPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP-GTRSVSASSGPCSPAAPHP---- 363
P G P G+ + P G+ G P G +S S+ S P P P P
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGN 228
Query: 364 ----PPPPRFQPHQG--PWGAPSPQAHLSPRPHDGPPA 395
PPPP +P QG P G PQ P GPPA
Sbjct: 229 QPQGPPPPPGKP-QGPPPQGGNKPQGPPPPGKPQGPPA 265
Score = 38.5 bits (88), Expect = 0.012
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 23/117 (19%)
Query: 300 KSPRLVAPVPPGAAPAN-----------GRLSSSSGSASDRTSSNPFSGRSAGSHP-GTR 347
+SP L+A P G +P G+ ++ P G+ G P G +
Sbjct: 27 ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDK 86
Query: 348 SVSASSGPCSPAAPHP--------PPPPRFQPHQG--PWGAPSPQAHLSPRPHDGPP 394
S S S P P P P PPPP +P QG P G PQ P GPP
Sbjct: 87 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP-QGPPPQGGNRPQGPPPPGKPQGPP 142
Score = 37.0 bits (84), Expect = 0.035
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 309 PPGAAPANGRLSSSSGSASDRTSSNPFSGRSAG--SHPGTRSVSASSGPCSPAAP----- 361
P G P G+ ++ P G+ G + G++S SA S P P P
Sbjct: 230 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEG 289
Query: 362 ---HPPPPPRFQPHQGPWGAPSPQAHLSPRPHDG 392
PPPP Q P P+ Q PRP G
Sbjct: 290 NNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 323
Score = 36.6 bits (83), Expect = 0.046
Identities = 35/117 (29%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 300 KSPRLVAPVPPGAAPAN-----------GRLSSSSGSASDRTSSNPFSGRSAGSHP-GTR 347
+SPR P G P G+ +R P G+ G P G +
Sbjct: 88 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDK 147
Query: 348 SVSASSGPCSPAAPHP--------PPPPRFQPHQG--PWGAPSPQAHLSPRPHDGPP 394
S S S P P P P PPPP +P QG P G PQ P GPP
Sbjct: 148 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP-QGPPPQGGKKPQGPPPPGKPQGPP 203
Score = 33.1 bits (74), Expect = 0.51
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 11/107 (10%)
Query: 295 PVMGLKSPRLVAPVPPG---AAPANGRLSSSSGSASDRTSSNPFSG----RSAGSHPGTR 347
P G K P+ P PPG P G S SS S + P G + PG
Sbjct: 183 PPQGGKKPQ--GPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKP 240
Query: 348 SVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPP 394
G P P PPP + Q G+ S A P GPP
Sbjct: 241 QGPPPQGGNKPQGP--PPPGKPQGPPAQGGSKSQSARSPPGKPQGPP 285
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 300 KSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAG--SHPGTRSVSASSGPCS 357
+SPR P G P G+ ++ P G+ G + G++S SA S P
Sbjct: 88 RSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 147
Query: 358 PAAP--------HPPPPPRFQPHQGPWGAPSPQAHLSPRPHDG 392
P P PPPP Q P P+ Q PRP G
Sbjct: 148 PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 190
Score = 35.8 bits (81), Expect = 0.078
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 309 PPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP-GTRSVSASSGPCSPAAPHPPPPP 367
P G P G+ ++ P G+ G P G +S S S P P P PP
Sbjct: 47 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP----PP 102
Query: 368 RFQPHQGP--WGAPSPQAHLSPRPHDGPPA 395
+ QGP G PQ P GPPA
Sbjct: 103 QGGKPQGPPPQGGNKPQGPPPPGKPQGPPA 132
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 331 SSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPP--PPPRFQPHQGPWGAPSPQAHLSPR 388
S +P + S+GS SV S P P+ P P PP PH P P P HL+
Sbjct: 30 SLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAAP 89
Query: 389 PHDGPPAA 396
H PAA
Sbjct: 90 AHQPQPAA 97
>gi|239754329 PREDICTED: hypothetical protein XP_002345954 [Homo
sapiens]
Length = 156
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/95 (35%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 305 VAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPA---AP 361
+AP+PPG P L SG T S P AG G R G CS P
Sbjct: 67 IAPLPPGRHPNRASLHPCSGEVF--TKSAPRRRSRAGQEVGKRGRRRQRGWCSAQPSFGP 124
Query: 362 HPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAA 396
P P P P G S AH PRP P AA
Sbjct: 125 RPDSPTPCTPSARP-GGSSGAAH--PRPQPPPHAA 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,827,575
Number of Sequences: 37866
Number of extensions: 1160484
Number of successful extensions: 17078
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 983
Number of HSP's that attempted gapping in prelim test: 10157
Number of HSP's gapped (non-prelim): 5506
length of query: 434
length of database: 18,247,518
effective HSP length: 105
effective length of query: 329
effective length of database: 14,271,588
effective search space: 4695352452
effective search space used: 4695352452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.