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Search of human proteins with 40254893
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40254893 transmembrane protein 106B [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197116389 transmembrane protein 106B [Homo sapiens] 551 e-157
gi|40254893 transmembrane protein 106B [Homo sapiens] 551 e-157
gi|219802834 transmembrane protein 106C isoform a [Homo sapiens] 216 2e-56
gi|13129026 transmembrane protein 106C isoform a [Homo sapiens] 216 2e-56
gi|219802857 transmembrane protein 106C isoform b [Homo sapiens] 200 1e-51
gi|219802797 transmembrane protein 106C isoform b [Homo sapiens] 200 1e-51
gi|21450796 transmembrane protein 106A [Homo sapiens] 196 2e-50
gi|18641347 protein tyrosine phosphatase, receptor type, C isofo... 35 0.054
gi|40217790 zinc finger protein 512 [Homo sapiens] 32 0.78
gi|20149680 fructosamine 3 kinase related protein [Homo sapiens] 31 1.3
gi|86788132 EGF-containing fibulin-like extracellular matrix pro... 30 1.7
gi|86788015 EGF-containing fibulin-like extracellular matrix pro... 30 1.7
gi|9665262 EGF-containing fibulin-like extracellular matrix prot... 30 1.7
gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens] 29 3.9
gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens] 29 3.9
gi|8051618 LIM domain kinase 2 isoform 2b [Homo sapiens] 29 3.9
gi|5031869 LIM domain kinase 2 isoform 2a [Homo sapiens] 29 3.9
gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo ... 29 5.1
gi|110611914 progesterone receptor [Homo sapiens] 28 8.6
gi|10863909 serine protease inhibitor, Kunitz type, 2 [Homo sapi... 28 8.6
>gi|197116389 transmembrane protein 106B [Homo sapiens]
Length = 274
Score = 551 bits (1420), Expect = e-157
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT 60
MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT
Sbjct: 1 MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT 60
Query: 61 CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS 120
CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS
Sbjct: 61 CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS 120
Query: 121 IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR 180
IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR
Sbjct: 121 IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR 180
Query: 181 LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS 240
LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS
Sbjct: 181 LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS 240
Query: 241 EQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ 274
EQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ
Sbjct: 241 EQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ 274
>gi|40254893 transmembrane protein 106B [Homo sapiens]
Length = 274
Score = 551 bits (1420), Expect = e-157
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT 60
MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT
Sbjct: 1 MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT 60
Query: 61 CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS 120
CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS
Sbjct: 61 CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS 120
Query: 121 IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR 180
IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR
Sbjct: 121 IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR 180
Query: 181 LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS 240
LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS
Sbjct: 181 LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS 240
Query: 241 EQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ 274
EQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ
Sbjct: 241 EQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ 274
>gi|219802834 transmembrane protein 106C isoform a [Homo sapiens]
Length = 250
Score = 216 bits (550), Expect = 2e-56
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 5/235 (2%)
Query: 24 ENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIP 83
E+ R+GL+ E ++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP
Sbjct: 19 EDDRDGLLAEREQEEA-----IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIP 73
Query: 84 YSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIY 143
+SDQRLRP+RTK YV+ S+ +CLL SGL VFFLFP S+ V G+K V+++ Q +
Sbjct: 74 HSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVI 133
Query: 144 LNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTVPTVI 203
L I TL I N+N+Y+V V ++++Q+Q+ TV+ N+++I P + +++T +
Sbjct: 134 LTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPRSEQLVNFTGKAEM 193
Query: 204 AEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
SY+Y FCT+ I VHNIV+ M+ +V +Y G Q S E + YVDCG N+T
Sbjct: 194 GGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 248
>gi|13129026 transmembrane protein 106C isoform a [Homo sapiens]
Length = 250
Score = 216 bits (550), Expect = 2e-56
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 5/235 (2%)
Query: 24 ENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIP 83
E+ R+GL+ E ++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP
Sbjct: 19 EDDRDGLLAEREQEEA-----IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIP 73
Query: 84 YSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIY 143
+SDQRLRP+RTK YV+ S+ +CLL SGL VFFLFP S+ V G+K V+++ Q +
Sbjct: 74 HSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVI 133
Query: 144 LNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTVPTVI 203
L I TL I N+N+Y+V V ++++Q+Q+ TV+ N+++I P + +++T +
Sbjct: 134 LTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPRSEQLVNFTGKAEM 193
Query: 204 AEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
SY+Y FCT+ I VHNIV+ M+ +V +Y G Q S E + YVDCG N+T
Sbjct: 194 GGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 248
>gi|219802857 transmembrane protein 106C isoform b [Homo sapiens]
Length = 231
Score = 200 bits (509), Expect = 1e-51
Identities = 111/238 (46%), Positives = 148/238 (62%), Gaps = 30/238 (12%)
Query: 24 ENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIP 83
E+ R+GL+ E ++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP
Sbjct: 19 EDDRDGLLAEREQEEA-----IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIP 73
Query: 84 YSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIY 143
+SDQRLRP+RTK YV+ S+ +CLL SGL VFFLFP S+ V G+K V+++ Q +
Sbjct: 74 HSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVI 133
Query: 144 LNITNTLNITNNNYYSVEVENITAQVQFSKTVI---GKARLNNITIIGPLDMKQIDYTVP 200
L I TL I N+N+Y+V V ++++Q+Q+ TV+ GKA + GP
Sbjct: 134 LTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMG-----GP----------- 177
Query: 201 TVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
SY+Y FCT+ I VHNIV+ M+ +V +Y G Q S E + YVDCG N+T
Sbjct: 178 ------FSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 229
>gi|219802797 transmembrane protein 106C isoform b [Homo sapiens]
Length = 231
Score = 200 bits (509), Expect = 1e-51
Identities = 111/238 (46%), Positives = 148/238 (62%), Gaps = 30/238 (12%)
Query: 24 ENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIP 83
E+ R+GL+ E ++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP
Sbjct: 19 EDDRDGLLAEREQEEA-----IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIP 73
Query: 84 YSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIY 143
+SDQRLRP+RTK YV+ S+ +CLL SGL VFFLFP S+ V G+K V+++ Q +
Sbjct: 74 HSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVI 133
Query: 144 LNITNTLNITNNNYYSVEVENITAQVQFSKTVI---GKARLNNITIIGPLDMKQIDYTVP 200
L I TL I N+N+Y+V V ++++Q+Q+ TV+ GKA + GP
Sbjct: 134 LTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMG-----GP----------- 177
Query: 201 TVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
SY+Y FCT+ I VHNIV+ M+ +V +Y G Q S E + YVDCG N+T
Sbjct: 178 ------FSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 229
>gi|21450796 transmembrane protein 106A [Homo sapiens]
Length = 262
Score = 196 bits (498), Expect = 2e-50
Identities = 110/258 (42%), Positives = 152/258 (58%), Gaps = 6/258 (2%)
Query: 1 MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVT 60
MGK+ S L S +ED + S G + S P VT
Sbjct: 1 MGKTFSQLG--SWREDENKSILSSKPAIGSKAVNYSSTGSSKSFCSCVPCEGTADASFVT 58
Query: 61 CPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRS 120
CPTCQG+G+IP+ E QLVALIPY DQRL+P+ TKL+V +V +CL+ S VFFLFPRS
Sbjct: 59 CPTCQGSGKIPQELEKQLVALIPYGDQRLKPKHTKLFVFLAVLICLVTSSFIVFFLFPRS 118
Query: 121 IDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKAR 180
+ V+ G+ S+ V++D + IYLNITN LNI+N NYY + V +T +V V+G+
Sbjct: 119 VIVQPAGLNSSTVAFD--EADIYLNITNILNISNGNYYPIMVTQLTLEVLHLSLVVGQVS 176
Query: 181 LNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHS 240
N + IGPL +Q+ Y V T I +E + Y CT + IKVH+++L +Q T+T +Y HS
Sbjct: 177 NNLLLHIGPLASEQMFYAVATKIRDENT--YKICTWLEIKVHHVLLHIQGTLTCSYLSHS 234
Query: 241 EQISQERYQYVDCGRNTT 258
EQ+ + Y+YVDC N +
Sbjct: 235 EQLVFQSYEYVDCRGNAS 252
>gi|18641347 protein tyrosine phosphatase, receptor type, C isoform
1 precursor [Homo sapiens]
Length = 1304
Score = 35.4 bits (80), Expect = 0.054
Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 7 HLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQG 66
HLP H+ + G ++ N++++ G N +S P T T P
Sbjct: 106 HLPTHADSQTPSAGTDTQTFSGSAANAKLNPTPGSNA-ISDVPGERSTASTFPTDPVSPL 164
Query: 67 TGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFL-------FPR 119
T + + S+ + + Y+ AS L SG AV
Sbjct: 165 TTTLSLAHHSSAALPARTSNTTITANTSDAYLNASETTTLSPSGSAVISTTTIATTPSKP 224
Query: 120 SIDVKYIGVKSAYV-SYDVQKRTIYLNITNTLNITNNNYYSVEVENIT 166
+ D KY + Y+ + + + T LN+ + NN + EV N+T
Sbjct: 225 TCDEKYANITVDYLYNKETKLFTAKLNVNENVECGNNTCTNNEVHNLT 272
>gi|40217790 zinc finger protein 512 [Homo sapiens]
Length = 567
Score = 31.6 bits (70), Expect = 0.78
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 43 GDVSQFPYVEFTGRDSVTCPTCQGTGR 69
G + + Y+E + SV+CPTCQ GR
Sbjct: 153 GSLEEQWYLEIVDKGSVSCPTCQAVGR 179
>gi|20149680 fructosamine 3 kinase related protein [Homo sapiens]
Length = 309
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 5 LSHLPLHSSKEDAY-DGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPT 63
+ HL H++K A + +N + G + + GR G + P+V G D VTC
Sbjct: 93 MRHLSSHAAKLGAQLADLHLDNKKLGEMRLKEAGTVGRGGGQEERPFVARFGFDVVTC-- 150
Query: 64 CQGTGRIPRGQENQLVALIPYSDQRLRPR 92
G +P+ + Q ++ Y+ QR++P+
Sbjct: 151 ---CGYLPQVNDWQEDWVVFYARQRIQPQ 176
>gi|86788132 EGF-containing fibulin-like extracellular matrix
protein 1 precursor [Homo sapiens]
Length = 493
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 97 YVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVS----YDVQKRTIYLNITNTLNI 152
Y++ C+ A+ P+SI KY+ ++S + +Q TIY N NT I
Sbjct: 369 YILTPENRCVCPVSNAMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYANTINTFRI 428
Query: 153 TNNN----YYSVEVENITAQVQFSKTVIG 177
+ N +Y + ++A + K++ G
Sbjct: 429 KSGNENGEFYLRQTSPVSAMLVLVKSLSG 457
>gi|86788015 EGF-containing fibulin-like extracellular matrix
protein 1 precursor [Homo sapiens]
Length = 493
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 97 YVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVS----YDVQKRTIYLNITNTLNI 152
Y++ C+ A+ P+SI KY+ ++S + +Q TIY N NT I
Sbjct: 369 YILTPENRCVCPVSNAMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYANTINTFRI 428
Query: 153 TNNN----YYSVEVENITAQVQFSKTVIG 177
+ N +Y + ++A + K++ G
Sbjct: 429 KSGNENGEFYLRQTSPVSAMLVLVKSLSG 457
>gi|9665262 EGF-containing fibulin-like extracellular matrix protein
1 precursor [Homo sapiens]
Length = 493
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 97 YVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVS----YDVQKRTIYLNITNTLNI 152
Y++ C+ A+ P+SI KY+ ++S + +Q TIY N NT I
Sbjct: 369 YILTPENRCVCPVSNAMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYANTINTFRI 428
Query: 153 TNNN----YYSVEVENITAQVQFSKTVIG 177
+ N +Y + ++A + K++ G
Sbjct: 429 KSGNENGEFYLRQTSPVSAMLVLVKSLSG 457
>gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens]
Length = 1909
Score = 29.3 bits (64), Expect = 3.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 9 PLHSS--KEDAYDGVTSENMRNGLVNSEVHNED--GRNGDVSQFPYVEFTGRDSVTCPTC 64
PL SS D DGV + +MR L +S+ H + G NG ++ D + P
Sbjct: 1232 PLESSIPGSDGRDGVDNRSMRRSLSSSKPHLKPALGMNGAKARSHSFSTHSGDKPSTPPI 1291
Query: 65 QGTGRI 70
+G+G++
Sbjct: 1292 EGSGKV 1297
>gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens]
Length = 686
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 203 IAEEMSYMYDFCTLI-SIKVHNIVLMMQVTVTTTYFGHSEQISQER 247
IA M+Y++ C + + HN ++ + TV FG S I +ER
Sbjct: 414 IASGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEER 459
>gi|8051618 LIM domain kinase 2 isoform 2b [Homo sapiens]
Length = 617
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 203 IAEEMSYMYDFCTLI-SIKVHNIVLMMQVTVTTTYFGHSEQISQER 247
IA M+Y++ C + + HN ++ + TV FG S I +ER
Sbjct: 414 IASGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEER 459
>gi|5031869 LIM domain kinase 2 isoform 2a [Homo sapiens]
Length = 638
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 203 IAEEMSYMYDFCTLI-SIKVHNIVLMMQVTVTTTYFGHSEQISQER 247
IA M+Y++ C + + HN ++ + TV FG S I +ER
Sbjct: 435 IASGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEER 480
>gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 5.1
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 29 GLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGR---IPRGQENQLVALIPYS 85
GL + H + R+ D+SQ G P+ Q G+ +P+G + + +S
Sbjct: 139 GLREAVGHGKVNRDADISQ------QGNKGNRAPSLQSLGQDIQLPQGTDKTSASSTAWS 192
Query: 86 DQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDV 137
D KL A + C L + AV L P D+ V +A S V
Sbjct: 193 DLSGYTAPPKLLNFAQPYFCQLSAVAAVTNLKPAFADLVRAAVGTASASATV 244
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 28.1 bits (61), Expect = 8.6
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 34 EVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRR 93
EV EDG + S P ++ R G +P G VAL+P D R R
Sbjct: 220 EVEEEDGSESEESAGPLLKGKPRALGGAAAGGGAAAVPPGAAAGGVALVPKEDSRFSAPR 279
Query: 94 TKL 96
L
Sbjct: 280 VAL 282
>gi|10863909 serine protease inhibitor, Kunitz type, 2 [Homo
sapiens]
Length = 252
Score = 28.1 bits (61), Expect = 8.6
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 19 DGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPT--------------- 63
D TS N + V S +D + F Y E+ ++VT P
Sbjct: 98 DLATSRNAADSSVPSAPRRQDSEDHSSDMFNYEEYCTANAVTGPCRASFPRWYFDVERNS 157
Query: 64 --------CQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFF 115
C+G R +E ++ + P +K+ V+A +FV +L+ L
Sbjct: 158 CNNFIYGGCRGNKNSYRSEEACMLRCFRQQENPPLPLGSKVVVLAGLFVMVLILFLGASM 217
Query: 116 LF 117
++
Sbjct: 218 VY 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,201,985
Number of Sequences: 37866
Number of extensions: 366619
Number of successful extensions: 807
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 20
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.