Search of human proteins with 39995078

Search of human proteins with 39995078

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39995078 hypothetical protein LOC60684 isoform b [Homo
sapiens]
         (1086 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]   2208   0.0  
gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]   2164   0.0  
gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo ...    35   0.29 
gi|110349719 titin isoform N2-A [Homo sapiens]                         32   4.3  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      32   4.3  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      32   4.3  
gi|110349715 titin isoform N2-B [Homo sapiens]                         32   4.3  
gi|116534937 interferon-induced protein with tetratricopeptide r...    32   4.3  
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2...    32   4.3  
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i...    32   4.3  
gi|187608516 centaurin, beta 2 [Homo sapiens]                          31   7.3  
gi|42794271 iodotyrosine dehalogenase 1 [Homo sapiens]                 30   9.5  
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs...    30   9.5  
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs...    30   9.5  

>gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]
          Length = 1086

 Score = 2208 bits (5722), Expect = 0.0
 Identities = 1086/1086 (100%), Positives = 1086/1086 (100%)

Query: 1    MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH 60
            MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH
Sbjct: 1    MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH 60

Query: 61   EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR 120
            EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR
Sbjct: 61   EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR 120

Query: 121  VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH 180
            VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH
Sbjct: 121  VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH 180

Query: 181  LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT 240
            LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT
Sbjct: 181  LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT 240

Query: 241  QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID 300
            QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID
Sbjct: 241  QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID 300

Query: 301  LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER 360
            LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER
Sbjct: 301  LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER 360

Query: 361  KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ 420
            KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ
Sbjct: 361  KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ 420

Query: 421  LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM 480
            LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM
Sbjct: 421  LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM 480

Query: 481  CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN 540
            CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
Sbjct: 481  CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN 540

Query: 541  VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH 600
            VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH
Sbjct: 541  VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH 600

Query: 601  VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV 660
            VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV
Sbjct: 601  VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV 660

Query: 661  PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA 720
            PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA
Sbjct: 661  PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA 720

Query: 721  RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE 780
            RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE
Sbjct: 721  RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE 780

Query: 781  KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM 840
            KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM
Sbjct: 781  KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM 840

Query: 841  LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE 900
            LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE
Sbjct: 841  LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE 900

Query: 901  HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS 960
            HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS
Sbjct: 901  HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS 960

Query: 961  ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL 1020
            ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL
Sbjct: 961  ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL 1020

Query: 1021 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLPAQAFYTYQYFCQA 1080
            PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLPAQAFYTYQYFCQA
Sbjct: 1021 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLPAQAFYTYQYFCQA 1080

Query: 1081 TGSTHG 1086
            TGSTHG
Sbjct: 1081 TGSTHG 1086


>gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]
          Length = 1133

 Score = 2164 bits (5607), Expect = 0.0
 Identities = 1066/1066 (100%), Positives = 1066/1066 (100%)

Query: 1    MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH 60
            MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH
Sbjct: 1    MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH 60

Query: 61   EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR 120
            EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR
Sbjct: 61   EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR 120

Query: 121  VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH 180
            VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH
Sbjct: 121  VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH 180

Query: 181  LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT 240
            LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT
Sbjct: 181  LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT 240

Query: 241  QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID 300
            QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID
Sbjct: 241  QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID 300

Query: 301  LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER 360
            LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER
Sbjct: 301  LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER 360

Query: 361  KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ 420
            KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ
Sbjct: 361  KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ 420

Query: 421  LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM 480
            LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM
Sbjct: 421  LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM 480

Query: 481  CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN 540
            CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
Sbjct: 481  CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN 540

Query: 541  VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH 600
            VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH
Sbjct: 541  VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH 600

Query: 601  VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV 660
            VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV
Sbjct: 601  VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV 660

Query: 661  PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA 720
            PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA
Sbjct: 661  PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA 720

Query: 721  RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE 780
            RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE
Sbjct: 721  RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE 780

Query: 781  KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM 840
            KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM
Sbjct: 781  KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM 840

Query: 841  LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE 900
            LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE
Sbjct: 841  LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE 900

Query: 901  HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS 960
            HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS
Sbjct: 901  HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS 960

Query: 961  ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL 1020
            ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL
Sbjct: 961  ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL 1020

Query: 1021 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRL 1066
            PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRL
Sbjct: 1021 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRL 1066


>gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo
           sapiens]
          Length = 368

 Score = 35.4 bits (80), Expect = 0.29
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 734 VHWDSIIIQASTMIISRVPNI---SVHLLHEPPALTNEMYCLV--VTVQSHEKTQIRD 786
           +HW++++   +T+II R+  +   ++ ++H    +T+E   ++  +TV +HE T I D
Sbjct: 165 IHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIID 222


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 955   TGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIP 1013
             TG +A +C+    P L   +GG    HYII  + TS +    + T V  L + + + +P
Sbjct: 24812 TGVTAEKCYLAWNPPLQ--DGGANISHYIIEKRETSRLSWTQVSTEVQALNYKVTKLLP 24868


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 955   TGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIP 1013
             TG +A +C+    P L   +GG    HYII  + TS +    + T V  L + + + +P
Sbjct: 18507 TGVTAEKCYLAWNPPLQ--DGGANISHYIIEKRETSRLSWTQVSTEVQALNYKVTKLLP 18563


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 955   TGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIP 1013
             TG +A +C+    P L   +GG    HYII  + TS +    + T V  L + + + +P
Sbjct: 18440 TGVTAEKCYLAWNPPLQ--DGGANISHYIIEKRETSRLSWTQVSTEVQALNYKVTKLLP 18496


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 955   TGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIP 1013
             TG +A +C+    P L   +GG    HYII  + TS +    + T V  L + + + +P
Sbjct: 18315 TGVTAEKCYLAWNPPLQ--DGGANISHYIIEKRETSRLSWTQVSTEVQALNYKVTKLLP 18371


>gi|116534937 interferon-induced protein with tetratricopeptide
           repeats 1 isoform 2 [Homo sapiens]
          Length = 478

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 215 NKTTHQLLFVRHQFKI------AFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIK 268
           N+   Q+ F+  ++ +      A+   LK   + ALK+ + A NL+ E   ++ N+  + 
Sbjct: 37  NRVLDQIEFLDTKYSVGIHNLLAYVKHLKGQNEEALKSLKEAENLMQEEHDNQANVRSLV 96

Query: 269 TMAGF--INYKICRLCFQHNTPLDAIAQFRKHIDLCKK 304
           T   F  + Y + RL  +  T LD +       ++CKK
Sbjct: 97  TWGNFAWMYYHMGRLA-EAQTYLDKVE------NICKK 127


>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
           isoform 2 [Homo sapiens]
          Length = 869

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 401 ILSFDLSDPEKEKVGILAIQLKERNVVHSEIIITLLSNAVAQFKKYK--CPRMKSHL 455
           ILS D SD +KEK   L   LK+  +  S+  +    N + Q  K +   P +KS+L
Sbjct: 549 ILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYL 605


>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
           isoform 1 [Homo sapiens]
          Length = 907

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 401 ILSFDLSDPEKEKVGILAIQLKERNVVHSEIIITLLSNAVAQFKKYK--CPRMKSHL 455
           ILS D SD +KEK   L   LK+  +  S+  +    N + Q  K +   P +KS+L
Sbjct: 587 ILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYL 643


>gi|187608516 centaurin, beta 2 [Homo sapiens]
          Length = 778

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 811 GTELCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVYVSYLINTTVEEKEI 870
           G ++ +  Y A +  + +    PG++ EK  Y+R   V  R F+   S  ++   ++K+ 
Sbjct: 471 GNDVINRVYEANVEKMGIKKPQPGQRQEKEAYIRAKYV-ERKFVDKYSISLSPPEQQKKF 529

Query: 871 VCKCHKDETVTIETVFPFD 889
           V K  +++ ++I    P D
Sbjct: 530 VSKSSEEKRLSISKFGPGD 548


>gi|42794271 iodotyrosine dehalogenase 1 [Homo sapiens]
          Length = 289

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 68  KRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEK 113
           KR  + W      L+T W+ ++L+  P L+++F ++       K+K
Sbjct: 163 KRMGHRWVTDLKKLRTNWIKEYLDTAPILILIFKQVHGFAANGKKK 208


>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 768 EMYCLVVTVQSHEKTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCD 816
           + Y  +VT  S ++ QI +  ++     G    L+ +TH+TLH  ++ D
Sbjct: 399 DQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDIND 447


>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 829

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 768 EMYCLVVTVQSHEKTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCD 816
           + Y  +VT  S ++ QI +  ++     G    L+ +TH+TLH  ++ D
Sbjct: 399 DQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDIND 447


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,349,747
Number of Sequences: 37866
Number of extensions: 1749807
Number of successful extensions: 3702
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3665
Number of HSP's gapped (non-prelim): 50
length of query: 1086
length of database: 18,247,518
effective HSP length: 113
effective length of query: 973
effective length of database: 13,968,660
effective search space: 13591506180
effective search space used: 13591506180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.