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Search of human proteins with 38348211
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348211 golgi transport 1 homolog A [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348211 golgi transport 1 homolog A [Homo sapiens] 269 5e-73
gi|7705636 golgi transport 1 homolog B [Homo sapiens] 162 7e-41
gi|169217968 PREDICTED: similar to solute carrier family 16, mem... 33 0.085
gi|4759116 solute carrier family 16, member 5 [Homo sapiens] 33 0.085
gi|222831612 solute carrier family 44, member 2 isoform 1 [Homo ... 31 0.25
gi|222831610 solute carrier family 44, member 2 isoform 2 [Homo ... 31 0.25
gi|93277094 hypothetical protein LOC116151 [Homo sapiens] 30 0.72
gi|229577422 solute carrier family 39, member 11 isoform 1 [Homo... 29 0.94
gi|229577418 solute carrier family 39, member 11 isoform 2 [Homo... 29 0.94
gi|20127551 transient receptor potential cation channel, subfami... 29 1.2
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 28 2.1
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 28 2.1
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 28 2.1
gi|226437592 transmembrane protein 114 [Homo sapiens] 28 2.1
gi|46048469 major facilitator superfamily domain containing 6-li... 27 3.6
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 27 4.7
gi|15529998 solute carrier family 9 (sodium/hydrogen exchanger),... 27 4.7
gi|115583685 solute carrier family 16, member 1 [Homo sapiens] 27 4.7
gi|34916028 solute carrier family 16 (monocarboxylic acid transp... 27 6.1
gi|134254459 sodium potassium chloride cotransporter 2 [Homo sap... 27 6.1
gi|53933268 olfactory receptor, family 6, subfamily C, member 74... 27 6.1
gi|6912550 olfactory receptor, family 10, subfamily J, member 1 ... 27 6.1
gi|144446030 lymphocyte antigen 75 [Homo sapiens] 27 6.1
gi|19913418 ATPase, H+ transporting, lysosomal V0 subunit a1 iso... 27 6.1
gi|194097403 ATPase, H+ transporting, lysosomal V0 subunit a1 is... 27 6.1
gi|194097401 ATPase, H+ transporting, lysosomal V0 subunit a1 is... 27 6.1
gi|8394398 taste receptor T2R3 [Homo sapiens] 27 6.1
gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens] 26 8.0
gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens] 26 8.0
gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens] 26 8.0
>gi|38348211 golgi transport 1 homolog A [Homo sapiens]
Length = 132
Score = 269 bits (687), Expect = 5e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFF 60
MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFF
Sbjct: 1 MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFF 60
Query: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGA 120
QRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGA
Sbjct: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGA 120
Query: 121 LFRRLQGTSSMV 132
LFRRLQGTSSMV
Sbjct: 121 LFRRLQGTSSMV 132
>gi|7705636 golgi transport 1 homolog B [Homo sapiens]
Length = 138
Score = 162 bits (410), Expect = 7e-41
Identities = 74/138 (53%), Positives = 103/138 (74%), Gaps = 6/138 (4%)
Query: 1 MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFF 60
MIS+T+ QKIG+G+TGFG+FF+ FG +L+FD LLA GN+LF+ GL+ +IGL +TF FFF
Sbjct: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
Query: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGF------LGNVCN 114
Q+HK+K T F LGGV +VL+ WPL+GM E YGFF LF+GFFPV GF LG++ N
Sbjct: 61 QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
Query: 115 IPFLGALFRRLQGTSSMV 132
+P + + ++ +++MV
Sbjct: 121 LPGIRSFVDKVGESNNMV 138
>gi|169217968 PREDICTED: similar to solute carrier family 16, member
5 [Homo sapiens]
Length = 453
Score = 32.7 bits (73), Expect = 0.085
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 12 VGITGFGIFFILFGTLLYFDSVLLAFGNLL--------FLTGLSLIIGLRKTFW---FFF 60
VG G + +L G L V +F + L F+TGL + + + F+F
Sbjct: 22 VGRFGCRVTVMLGGVLASLGMVASSFSHNLSQLYFTAGFITGLGMCFSFQSSITVLGFYF 81
Query: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMF-LETYGF---FSLFKGFF 102
R ++ + GV + + WPLL + LE G+ F +F G F
Sbjct: 82 VRRRVLANALASMGVSLGITLWPLLSRYLLENLGWRGTFLVFGGIF 127
>gi|4759116 solute carrier family 16, member 5 [Homo sapiens]
Length = 505
Score = 32.7 bits (73), Expect = 0.085
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 12 VGITGFGIFFILFGTLLYFDSVLLAFGNLL--------FLTGLSLIIGLRKTFW---FFF 60
VG G + +L G L V +F + L F+TGL + + + F+F
Sbjct: 74 VGRFGCRVTVMLGGVLASLGMVASSFSHNLSQLYFTAGFITGLGMCFSFQSSITVLGFYF 133
Query: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMF-LETYGF---FSLFKGFF 102
R ++ + GV + + WPLL + LE G+ F +F G F
Sbjct: 134 VRRRVLANALASMGVSLGITLWPLLSRYLLENLGWRGTFLVFGGIF 179
>gi|222831612 solute carrier family 44, member 2 isoform 1 [Homo
sapiens]
Length = 706
Score = 31.2 bits (69), Expect = 0.25
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 20 FFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLK---GTSFLLGGVV 76
FF+L ++ +VL + LFL G LI+G FFF H+++ T+ L
Sbjct: 581 FFLLMRNIIRV-AVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYW 639
Query: 77 IVLLRWPLLGMFLETYGFFSLF 98
+ +L ++G +L +GFFS++
Sbjct: 640 VPILT-VIVGSYLIAHGFFSVY 660
>gi|222831610 solute carrier family 44, member 2 isoform 2 [Homo
sapiens]
Length = 704
Score = 31.2 bits (69), Expect = 0.25
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 20 FFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLK---GTSFLLGGVV 76
FF+L ++ +VL + LFL G LI+G FFF H+++ T+ L
Sbjct: 579 FFLLMRNIIRV-AVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYW 637
Query: 77 IVLLRWPLLGMFLETYGFFSLF 98
+ +L ++G +L +GFFS++
Sbjct: 638 VPILT-VIVGSYLIAHGFFSVY 658
>gi|93277094 hypothetical protein LOC116151 [Homo sapiens]
Length = 192
Score = 29.6 bits (65), Expect = 0.72
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 10 IGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTS 69
IG+ + GIF+++ + + ++LL G L + G TF + HKL
Sbjct: 105 IGISLISLGIFYMVVSSGVDMPAILLKLGFKESLVQSKMAAG-TSTFVVAYAIHKL---- 159
Query: 70 FLLGGVVIVLLRWPLLGMFLETYGFF 95
F + I L+ PL+ + GFF
Sbjct: 160 FAPVRISITLVSVPLIVRYFRKVGFF 185
>gi|229577422 solute carrier family 39, member 11 isoform 1 [Homo
sapiens]
Length = 342
Score = 29.3 bits (64), Expect = 0.94
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLE---TYGFFSLFKGFFPVAFGF 108
QR L G+ GV++ W LL +E + G F F FFPVA GF
Sbjct: 36 QRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSSGGFGAF-AFFPVAVGF 85
>gi|229577418 solute carrier family 39, member 11 isoform 2 [Homo
sapiens]
Length = 335
Score = 29.3 bits (64), Expect = 0.94
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLE---TYGFFSLFKGFFPVAFGF 108
QR L G+ GV++ W LL +E + G F F FFPVA GF
Sbjct: 36 QRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSSGGFGAF-AFFPVAVGF 85
>gi|20127551 transient receptor potential cation channel, subfamily
V, member 2 [Homo sapiens]
Length = 764
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 31 DSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSFLLGGVVIVLLRWPLLGMFLE 90
+S+LL L+ L G+ L++G W+F++RH SF+ I+ L LL + +
Sbjct: 429 NSMLLTGHILILLGGIYLLVG---QLWYFWRRHVFIWISFIDSYFEILFLFQALLTVVSQ 485
Query: 91 TYGFFSL 97
F ++
Sbjct: 486 VLCFLAI 492
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 13 GITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLII 50
G+TGF F + LL +L FG ++ L G+S+ I
Sbjct: 121 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYI 158
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 13 GITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLII 50
G+TGF F + LL +L FG ++ L G+S+ I
Sbjct: 115 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYI 152
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 13 GITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLII 50
G+TGF F + LL +L FG ++ L G+S+ I
Sbjct: 20 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYI 57
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 13 GITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLII 50
G+TGF F + LL +L FG ++ L G+S+ I
Sbjct: 121 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYI 158
>gi|46048469 major facilitator superfamily domain containing 6-like
[Homo sapiens]
Length = 586
Score = 27.3 bits (59), Expect = 3.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 65 LKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGALFRR 124
L T+ L+G +V + + L ++ +G L GF VA LG + PF L R+
Sbjct: 371 LASTTVLVGAIVSTVQNF--LFWHMKDHGSGELVMGF-SVALSLLGEILLHPFKATLLRK 427
Query: 125 LQGT 128
L T
Sbjct: 428 LSRT 431
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 26.9 bits (58), Expect = 4.7
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 12 VGITGFGIFFILFGTLLYFDS---VLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGT 68
VG+ G G ++L T L+ S +LLA G T L ++GL W R L G
Sbjct: 994 VGLVGLGASYLLLCTALHLPSSLFLLLAQG-----TALGAVLGLS---W----RRGLMGV 1041
Query: 69 SFLLGGVVIVLLRWPLLGM 87
LG LL WP L +
Sbjct: 1042 PLGLGAA--WLLAWPGLAL 1058
>gi|15529998 solute carrier family 9 (sodium/hydrogen exchanger),
member 2 [Homo sapiens]
Length = 812
Score = 26.9 bits (58), Expect = 4.7
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 5 TEWQKIGVGITGFGIFFI-LFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRH 63
T W IG+G++ FGI I FG L FG+L+ ++ + + Q +
Sbjct: 177 TLWNSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLY 236
Query: 64 KLKGTSFLLGGVVIVLLRWPLLGMF-----LETYGFFSLFKGFFPVAFG 107
L LL V V+L + L F +ET F+ FF V G
Sbjct: 237 ILVFGESLLNDAVTVVL-YNLFKSFCQMKTIETIDVFAGIANFFVVGIG 284
>gi|115583685 solute carrier family 16, member 1 [Homo sapiens]
Length = 500
Score = 26.9 bits (58), Expect = 4.7
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 31/113 (27%)
Query: 19 IFFILFGTLLYFDSV----------------LLAFGNLLFLTGLSLIIG---LRKTFWFF 59
+FF LF L++ S +LAF +++ + L+ +R +F
Sbjct: 273 MFFGLFAPLVFLSSYGKSQHYSSEKSAFLLSILAFVDMVARPSMGLVANTKPIRPRIQYF 332
Query: 60 FQRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNV 112
F S + GV +L TY F ++ GFF AFG+L +V
Sbjct: 333 F------AASVVANGVC------HMLAPLSTTYVGFCVYAGFFGFAFGWLSSV 373
>gi|34916028 solute carrier family 16 (monocarboxylic acid
transporters), member 9 [Homo sapiens]
Length = 509
Score = 26.6 bits (57), Expect = 6.1
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 13 GITGF-----GIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFF--FQRHKL 65
GI GF IF + + + + A+G L+F GL +G WF+ Q + +
Sbjct: 403 GILGFLTGNWSIFPYVTTKTVGIEKLAHAYGILMFFAGLGNSLGPPIVGWFYDWTQTYDI 462
Query: 66 ----KGTSFLLGGVVIVLLRWP 83
G LLGG +++L P
Sbjct: 463 AFYFSGFCVLLGGFILLLAALP 484
>gi|134254459 sodium potassium chloride cotransporter 2 [Homo
sapiens]
Length = 1099
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 88 FLETYGFFSLFKGFFPVAFGFL 109
F + GFFS+F FFP A G L
Sbjct: 374 FTKGEGFFSVFAIFFPAATGIL 395
>gi|53933268 olfactory receptor, family 6, subfamily C, member 74
[Homo sapiens]
Length = 312
Score = 26.6 bits (57), Expect = 6.1
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 12 VGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSF 70
+G+T ++ LL+F +L GNL +T L + L+ +FF + SF
Sbjct: 13 LGLTDDPQLQVIIFLLLFFTYMLSITGNLTIITLTLLDLHLKTPMYFFLRNFSFLEVSF 71
>gi|6912550 olfactory receptor, family 10, subfamily J, member 1
[Homo sapiens]
Length = 320
Score = 26.6 bits (57), Expect = 6.1
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 14 ITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSFLLG 73
IT FG+F L+ +L GN++ +T + + + L +FF T + L
Sbjct: 36 ITLFGVFLALY--------ILTLAGNIIIVTIIRIDLHLHTPMYFFLSMLSTSETVYTL- 86
Query: 74 GVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFG 107
V++ + L+GM + FF V FG
Sbjct: 87 -VILPRMLSSLVGMSQPMSLAGCATQMFFFVTFG 119
>gi|144446030 lymphocyte antigen 75 [Homo sapiens]
Length = 1722
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 41 LFLTGLSLIIGLRKTFWFFFQRHKLKGTSF 70
+ + LS+++ + WF FQRH+L F
Sbjct: 1672 IIVATLSILVLMGGLIWFLFQRHRLHLAGF 1701
>gi|19913418 ATPase, H+ transporting, lysosomal V0 subunit a1
isoform c [Homo sapiens]
Length = 831
Score = 26.6 bits (57), Expect = 6.1
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 IGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTS 69
IG+ + +LF F ++ +A LL + GLS + + W FQ GT
Sbjct: 756 IGLSVKSLAGGLVLFFFFTAFATLTVAI--LLIMEGLSAFLHALRLHWVEFQNKFYSGTG 813
Query: 70 F 70
F
Sbjct: 814 F 814
>gi|194097403 ATPase, H+ transporting, lysosomal V0 subunit a1
isoform b [Homo sapiens]
Length = 837
Score = 26.6 bits (57), Expect = 6.1
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 IGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTS 69
IG+ + +LF F ++ +A LL + GLS + + W FQ GT
Sbjct: 762 IGLSVKSLAGGLVLFFFFTAFATLTVAI--LLIMEGLSAFLHALRLHWVEFQNKFYSGTG 819
Query: 70 F 70
F
Sbjct: 820 F 820
>gi|194097401 ATPase, H+ transporting, lysosomal V0 subunit a1
isoform a [Homo sapiens]
Length = 838
Score = 26.6 bits (57), Expect = 6.1
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 IGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTS 69
IG+ + +LF F ++ +A LL + GLS + + W FQ GT
Sbjct: 763 IGLSVKSLAGGLVLFFFFTAFATLTVAI--LLIMEGLSAFLHALRLHWVEFQNKFYSGTG 820
Query: 70 F 70
F
Sbjct: 821 F 821
>gi|8394398 taste receptor T2R3 [Homo sapiens]
Length = 316
Score = 26.6 bits (57), Expect = 6.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 20 FFILFGTLLYFDSVLLA-FGNLLFLTGLSLIIGLRKTFWF 58
FF LF LLYF + L+A FGN L T ++ +IG T ++
Sbjct: 239 FFFLF--LLYFLAFLIASFGNFLPKTKMAKMIGEVMTMFY 276
>gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]
Length = 158
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 104 VAFGFLGNVCNIPFLGALFRRL 125
V F LGN+C P A+FR+L
Sbjct: 9 VLFVCLGNICRSPIAEAVFRKL 30
>gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]
Length = 158
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 104 VAFGFLGNVCNIPFLGALFRRL 125
V F LGN+C P A+FR+L
Sbjct: 9 VLFVCLGNICRSPIAEAVFRKL 30
>gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]
Length = 112
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 104 VAFGFLGNVCNIPFLGALFRRL 125
V F LGN+C P A+FR+L
Sbjct: 9 VLFVCLGNICRSPIAEAVFRKL 30
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.338 0.156 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,164,411
Number of Sequences: 37866
Number of extensions: 156315
Number of successful extensions: 576
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 35
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.