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Search of human proteins with 34740329
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
(378 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 813 0.0
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 550 e-157
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 486 e-137
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 486 e-137
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 458 e-129
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 444 e-125
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 444 e-125
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 395 e-110
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 395 e-110
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 394 e-110
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 322 3e-88
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 207 1e-53
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 200 2e-51
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 199 3e-51
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 198 8e-51
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 183 2e-46
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 182 3e-46
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 182 4e-46
gi|20373175 musashi 2 isoform a [Homo sapiens] 167 2e-41
gi|4505255 musashi 1 [Homo sapiens] 164 1e-40
gi|25121993 musashi 2 isoform b [Homo sapiens] 160 2e-39
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 147 1e-35
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 147 1e-35
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 141 1e-33
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 141 1e-33
gi|55956899 keratin 9 [Homo sapiens] 139 5e-33
gi|239747524 PREDICTED: similar to serum response factor-related... 138 9e-33
gi|109255251 loricrin [Homo sapiens] 118 8e-27
gi|109452587 family with sequence similarity 98, member B isofor... 117 2e-26
gi|195972866 keratin 10 [Homo sapiens] 117 2e-26
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 813 bits (2099), Expect = 0.0
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 1 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 60
MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
Sbjct: 1 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 60
Query: 61 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 120
LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
Sbjct: 61 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 120
Query: 121 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
Sbjct: 121 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
Query: 181 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRG 240
DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRG
Sbjct: 181 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRG 240
Query: 241 GNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 300
GNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG
Sbjct: 241 GNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 300
Query: 301 GGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPY 360
GGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPY
Sbjct: 301 GGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPY 360
Query: 361 GGGYGSGGGSGGYGSRRF 378
GGGYGSGGGSGGYGSRRF
Sbjct: 361 GGGYGSGGGSGGYGSRRF 378
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 550 bits (1418), Expect = e-157
Identities = 283/376 (75%), Positives = 302/376 (80%), Gaps = 27/376 (7%)
Query: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182
Query: 204 KQEMQSA-GSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
KQEM SA SQRGR GSGNF GRGG F GG NFGRGGNF GRGG+GG GG G YG
Sbjct: 183 KQEMASASSSQRGR-SGSGNFGGGRGGGF-GGNDNFGRGGNFSGRGGFGGSRGG--GGYG 238
Query: 262 GGDGGYNGFGGDGGNYGGGPGYSSRG-GYGGGGPGYGNQGGGYGGGGGYDGYNE--GGNF 318
G GYNGFG DGG GGGPGYS GYG GG GYGNQG GYGG G YD YN GG F
Sbjct: 239 GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF 298
Query: 319 GGG---NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GG 363
GGG N+GGGG+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GG
Sbjct: 299 GGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPRNQGG 356
Query: 364 YGSGGGSGGYGS-RRF 378
YG S YGS RRF
Sbjct: 357 YGGSSSSSSYGSGRRF 372
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 486 bits (1250), Expect = e-137
Identities = 253/360 (70%), Positives = 282/360 (78%), Gaps = 36/360 (10%)
Query: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
+E EQ RKLFIGGLSFETT++SLR ++E+WG LTDCVVMRDP +KRSRGFGFVT+S + E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
VDAAM ARPH +DGRVVEPKRAV+RE+S KPGAH+TVKK+FVGGIKEDTEE++LRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
YGKI+TIE++ DRQSGKKRGF FVTFDDHD VDKIV+QKYHTINGHN EV+KALS+QEMQ
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 209 SAGSQRGRGGGSGNFMGRGGNFG-----GGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGG 263
S R GRGGNFG GGGGNFG G RGG G G G G G
Sbjct: 195 EVQSSRS---------GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR----GFG 241
Query: 264 DGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
DG YNG+GG GGN+GG PGY RGGYGGGGPGYGNQGGGYGGG YD N+GG
Sbjct: 242 DG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YD------NYGG 292
Query: 321 GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG--GGSGGYGSR 376
GNYG G NYNDFGNY+ QQ SNYGPMK G+FGG R+ G PYGGG YG G GGSGGYG R
Sbjct: 293 GNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 350
Score = 70.5 bits (171), Expect = 2e-12
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
RP GR +R EE P ++KLF+GG+ +T + LR++FE++G +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
++ D Q+ + RGFGFVT+ + VD + + H ++G E ++A+SR++
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 315 GGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSG---SPYGGGYGSG--GG 369
GGNFG G+ GGG GN+ SN+ G GR G + YGGG G G GG
Sbjct: 204 GGNFGFGDSRGGG-----GNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGG 258
Query: 370 SGGYGSRR 377
S GYG R
Sbjct: 259 SPGYGGGR 266
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 486 bits (1250), Expect = e-137
Identities = 253/360 (70%), Positives = 282/360 (78%), Gaps = 36/360 (10%)
Query: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
+E EQ RKLFIGGLSFETT++SLR ++E+WG LTDCVVMRDP +KRSRGFGFVT+S + E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
VDAAM ARPH +DGRVVEPKRAV+RE+S KPGAH+TVKK+FVGGIKEDTEE++LRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
YGKI+TIE++ DRQSGKKRGF FVTFDDHD VDKIV+QKYHTINGHN EV+KALS+QEMQ
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 209 SAGSQRGRGGGSGNFMGRGGNFG-----GGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGG 263
S R GRGGNFG GGGGNFG G RGG G G G G G
Sbjct: 183 EVQSSRS---------GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR----GFG 229
Query: 264 DGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
DG YNG+GG GGN+GG PGY RGGYGGGGPGYGNQGGGYGGG YD N+GG
Sbjct: 230 DG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YD------NYGG 280
Query: 321 GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG--GGSGGYGSR 376
GNYG G NYNDFGNY+ QQ SNYGPMK G+FGG R+ G PYGGG YG G GGSGGYG R
Sbjct: 281 GNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 338
Score = 70.5 bits (171), Expect = 2e-12
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
RP GR +R EE P ++KLF+GG+ +T + LR++FE++G +
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
++ D Q+ + RGFGFVT+ + VD + + H ++G E ++A+SR++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 315 GGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSG---SPYGGGYGSG--GG 369
GGNFG G+ GGG GN+ SN+ G GR G + YGGG G G GG
Sbjct: 192 GGNFGFGDSRGGG-----GNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGG 246
Query: 370 SGGYGSRR 377
S GYG R
Sbjct: 247 SPGYGGGR 254
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 458 bits (1178), Expect = e-129
Identities = 241/345 (69%), Positives = 260/345 (75%), Gaps = 35/345 (10%)
Query: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182
Query: 204 KQEMQSA-GSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
KQEM SA SQRGR GSGNF GRGG F GG NFGRGGNF GRGG+GG GG G YG
Sbjct: 183 KQEMASASSSQRGR-SGSGNFGGGRGGGF-GGNDNFGRGGNFSGRGGFGGSRGG--GGYG 238
Query: 262 GGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG- 320
G GYNGFG DG N+GGG Y+ G Y NQ +G +GGNFGG
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFG-------NYNNQSSNFGP-------MKGGNFGGR 284
Query: 321 --GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
G YGGGG Y F P G +GG SS S YG G
Sbjct: 285 SSGPYGGGGQY--FAK----------PRNQGGYGGSSSSSSYGSG 317
Score = 70.9 bits (172), Expect = 2e-12
Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 32/265 (12%)
Query: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT 124
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++ +
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 125 VKK---IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD--DHDT 179
+ F GG + D F + G + G G + ++ +D
Sbjct: 195 GRSGSGNFGGG---RGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG 251
Query: 180 VDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGR-GGNFGGGGGNFG 238
+ Y+ +N + + G +G GNF GR G +GGGG F
Sbjct: 252 SNFGGGGSYNDFGNYN---------NQSSNFGPMKG-----GNFGGRSSGPYGGGGQYFA 297
Query: 239 RGGNFGGRGGYGGGGGGSRGSYGGG 263
+ N +GGYGG S SYG G
Sbjct: 298 KPRN---QGGYGGSSSSS--SYGSG 317
Score = 61.2 bits (147), Expect = 1e-09
Identities = 45/131 (34%), Positives = 52/131 (39%), Gaps = 67/131 (51%)
Query: 313 NEGGNFGGG--------------------------------------------------- 321
++ G G G
Sbjct: 192 SQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG 251
Query: 322 -NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GGYGSGG 368
N+GGGG+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GGYG
Sbjct: 252 SNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPRNQGGYGGSS 309
Query: 369 GSGGYGS-RRF 378
S YGS RRF
Sbjct: 310 SSSSYGSGRRF 320
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 444 bits (1143), Expect = e-125
Identities = 233/340 (68%), Positives = 252/340 (74%), Gaps = 33/340 (9%)
Query: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY+ VE
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147
EVDAAM PHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LRDYFE
Sbjct: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 148 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207
+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+ GHNCEV+KAL KQEM
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
Query: 208 QSA-GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266
SA SQRGR GSGNF G G+ GG NFGRGGNF GRGG+GG GG G YGG G
Sbjct: 187 ASASSSQRGR-RGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG--GGYGGSGDG 243
Query: 267 YNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG---GNY 323
YNGFG DG N+GGG Y+ G Y NQ +G +GGNFGG G Y
Sbjct: 244 YNGFGNDGSNFGGGGSYNDFG-------NYNNQSSNFGP-------MKGGNFGGRSSGPY 289
Query: 324 GGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
GGGG Y F P G +G SS S YG G
Sbjct: 290 GGGGQY--FAK----------PQNQGGYGVSSSSSSYGSG 317
Score = 65.5 bits (158), Expect = 8e-11
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
S P ++K+F+GG+ +T + +LR +FE++G + VM D + + RGF FVT+
Sbjct: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 176 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
+ VD + H ++G E K+A+S+++ Q G+
Sbjct: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGA 100
Score = 63.9 bits (154), Expect = 2e-10
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 28/247 (11%)
Query: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
E+ P ++K+F+GG+ +T + LR++FE++G + +M D + + RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139
+ + VD + + H V G E ++A+ +++ + ++ F GG +
Sbjct: 153 FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGG---RGDG 209
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD--DHDTVDKIVVQKYHTINGHNCE 197
+ D F + G G G + ++ +D + Y+ +N
Sbjct: 210 FGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-- 267
Query: 198 VKKALSKQEMQSAGSQRGRGGGSGNFMGR-GGNFGGGGGNFGRGGNFGGRGGYGGGGGGS 256
+ + G +G GNF GR G +GGGG F + N +GGYG S
Sbjct: 268 -------NQSSNFGPMKG-----GNFGGRSSGPYGGGGQYFAKPQN---QGGYGVSSSSS 312
Query: 257 RGSYGGG 263
SYG G
Sbjct: 313 --SYGSG 317
Score = 60.1 bits (144), Expect = 3e-09
Identities = 45/131 (34%), Positives = 52/131 (39%), Gaps = 67/131 (51%)
Query: 313 NEGGNFGGG--------------------------------------------------- 321
++ G G G
Sbjct: 192 SQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDG 251
Query: 322 -NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GGYGSGG 368
N+GGGG+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GGYG
Sbjct: 252 SNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPQNQGGYGVSS 309
Query: 369 GSGGYGS-RRF 378
S YGS RRF
Sbjct: 310 SSSSYGSGRRF 320
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 444 bits (1143), Expect = e-125
Identities = 233/340 (68%), Positives = 252/340 (74%), Gaps = 33/340 (9%)
Query: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY+ VE
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147
EVDAAM PHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LRDYFE
Sbjct: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 148 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207
+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+ GHNCEV+KAL KQEM
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
Query: 208 QSA-GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266
SA SQRGR GSGNF G G+ GG NFGRGGNF GRGG+GG GG G YGG G
Sbjct: 187 ASASSSQRGR-RGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG--GGYGGSGDG 243
Query: 267 YNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG---GNY 323
YNGFG DG N+GGG Y+ G Y NQ +G +GGNFGG G Y
Sbjct: 244 YNGFGNDGSNFGGGGSYNDFG-------NYNNQSSNFGP-------MKGGNFGGRSSGPY 289
Query: 324 GGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
GGGG Y F P G +G SS S YG G
Sbjct: 290 GGGGQY--FAK----------PQNQGGYGVSSSSSSYGSG 317
Score = 65.5 bits (158), Expect = 8e-11
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
S P ++K+F+GG+ +T + +LR +FE++G + VM D + + RGF FVT+
Sbjct: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 176 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
+ VD + H ++G E K+A+S+++ Q G+
Sbjct: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGA 100
Score = 63.9 bits (154), Expect = 2e-10
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 28/247 (11%)
Query: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
E+ P ++K+F+GG+ +T + LR++FE++G + +M D + + RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139
+ + VD + + H V G E ++A+ +++ + ++ F GG +
Sbjct: 153 FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGG---RGDG 209
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD--DHDTVDKIVVQKYHTINGHNCE 197
+ D F + G G G + ++ +D + Y+ +N
Sbjct: 210 FGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-- 267
Query: 198 VKKALSKQEMQSAGSQRGRGGGSGNFMGR-GGNFGGGGGNFGRGGNFGGRGGYGGGGGGS 256
+ + G +G GNF GR G +GGGG F + N +GGYG S
Sbjct: 268 -------NQSSNFGPMKG-----GNFGGRSSGPYGGGGQYFAKPQN---QGGYGVSSSSS 312
Query: 257 RGSYGGG 263
SYG G
Sbjct: 313 --SYGSG 317
Score = 60.1 bits (144), Expect = 3e-09
Identities = 45/131 (34%), Positives = 52/131 (39%), Gaps = 67/131 (51%)
Query: 313 NEGGNFGGG--------------------------------------------------- 321
++ G G G
Sbjct: 192 SQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDG 251
Query: 322 -NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GGYGSGG 368
N+GGGG+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GGYG
Sbjct: 252 SNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPQNQGGYGVSS 309
Query: 369 GSGGYGS-RRF 378
S YGS RRF
Sbjct: 310 SSSSYGSGRRF 320
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 395 bits (1016), Expect = e-110
Identities = 210/344 (61%), Positives = 238/344 (69%), Gaps = 38/344 (11%)
Query: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
+ PKEP+QLRKLFIGGL FET+D+SLR H E+WGTLT+CVVMRDP T RSRGFGFV Y
Sbjct: 3 KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62
Query: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
VEEVDAAM ARPHK+ GRVVEPK AVSREDS +PGA+LTVKKIFVGGIKEDTEE+ LR
Sbjct: 63 VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLR 122
Query: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
DY+E+YGK E IE+M D+ SGKKR FAFVTFD+HD+ DKIV+QKYH +NGHNCEV+KALS
Sbjct: 123 DYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALS 182
Query: 204 KQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
KQ+M SA S + GSGNF GRGG F G NFG GGNF G GG+G GS+GG
Sbjct: 183 KQKMASAPSSQRSRSGSGNFGGGRGGGF-SGNDNFGHGGNFSGCGGFG-------GSHGG 234
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN 322
GYNGFG DG N+GGG Y+ G NQ +G +GGNFGG
Sbjct: 235 SADGYNGFGNDGKNFGGGSSYNDFG-------NCNNQSSNFGP-------MKGGNFGGKR 280
Query: 323 ---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
YGGGG Y F P G +GG SS S YG G
Sbjct: 281 SCLYGGGGQY--FAK----------PQNQGGYGGSSSSSSYGSG 312
Score = 58.2 bits (139), Expect = 1e-08
Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 29/245 (11%)
Query: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
E+ P ++K+F+GG+ +T + LR+++E++G +M D + + R F FVT
Sbjct: 93 EDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVT 152
Query: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139
+ + D + + H V+G E ++A+S++ + + F GG
Sbjct: 153 FDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGG---RGGG 209
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199
++ D F G G G+ D + Y+ NC
Sbjct: 210 FSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG---SSYNDFG--NC--- 261
Query: 200 KALSKQEMQSAGSQRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG 258
+ + G +G GNF G R +GGGG F + N +GGYGG S
Sbjct: 262 ----NNQSSNFGPMKG-----GNFGGKRSCLYGGGGQYFAKPQN---QGGYGGSSSSS-- 307
Query: 259 SYGGG 263
SYG G
Sbjct: 308 SYGSG 312
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 395 bits (1016), Expect = e-110
Identities = 210/344 (61%), Positives = 238/344 (69%), Gaps = 38/344 (11%)
Query: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
+ PKEP+QLRKLFIGGL FET+D+SLR H E+WGTLT+CVVMRDP T RSRGFGFV Y
Sbjct: 3 KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62
Query: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
VEEVDAAM ARPHK+ GRVVEPK AVSREDS +PGA+LTVKKIFVGGIKEDTEE+ LR
Sbjct: 63 VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLR 122
Query: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
DY+E+YGK E IE+M D+ SGKKR FAFVTFD+HD+ DKIV+QKYH +NGHNCEV+KALS
Sbjct: 123 DYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALS 182
Query: 204 KQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
KQ+M SA S + GSGNF GRGG F G NFG GGNF G GG+G GS+GG
Sbjct: 183 KQKMASAPSSQRSRSGSGNFGGGRGGGF-SGNDNFGHGGNFSGCGGFG-------GSHGG 234
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN 322
GYNGFG DG N+GGG Y+ G NQ +G +GGNFGG
Sbjct: 235 SADGYNGFGNDGKNFGGGSSYNDFG-------NCNNQSSNFGP-------MKGGNFGGKR 280
Query: 323 ---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
YGGGG Y F P G +GG SS S YG G
Sbjct: 281 SCLYGGGGQY--FAK----------PQNQGGYGGSSSSSSYGSG 312
Score = 58.2 bits (139), Expect = 1e-08
Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 29/245 (11%)
Query: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
E+ P ++K+F+GG+ +T + LR+++E++G +M D + + R F FVT
Sbjct: 93 EDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVT 152
Query: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139
+ + D + + H V+G E ++A+S++ + + F GG
Sbjct: 153 FDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGG---RGGG 209
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199
++ D F G G G+ D + Y+ NC
Sbjct: 210 FSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG---SSYNDFG--NC--- 261
Query: 200 KALSKQEMQSAGSQRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG 258
+ + G +G GNF G R +GGGG F + N +GGYGG S
Sbjct: 262 ----NNQSSNFGPMKG-----GNFGGKRSCLYGGGGQYFAKPQN---QGGYGGSSSSS-- 307
Query: 259 SYGGG 263
SYG G
Sbjct: 308 SYGSG 312
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 394 bits (1012), Expect = e-110
Identities = 210/344 (61%), Positives = 237/344 (68%), Gaps = 38/344 (11%)
Query: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
+ PKEP+QLRKLFIGGL FET+D+SLR H E+WGTLT+CVVMRDP T RSRGFGFV Y
Sbjct: 3 KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62
Query: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
VEEVDAAM ARPHK+ GRVVEPK AVSREDS +PGA+LTVKKIFVGGIKEDTEE+ LR
Sbjct: 63 VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLR 122
Query: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
DY+E+YGK E IE+M D+ SGKKR FAFVTFD+HD+ DKIV+QKYH +NGHNCEV+KALS
Sbjct: 123 DYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALS 182
Query: 204 KQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
KQ+M SA S + GSGNF GRGG F G NFG GGNF G GG G GS+GG
Sbjct: 183 KQKMASAPSSQRSRSGSGNFGGGRGGGF-SGNDNFGHGGNFSGCGGLG-------GSHGG 234
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN 322
GYNGFG DG N+GGG Y+ G NQ +G +GGNFGG
Sbjct: 235 SADGYNGFGNDGKNFGGGSSYNDFG-------NCNNQSSNFGP-------MKGGNFGGKR 280
Query: 323 ---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
YGGGG Y F P G +GG SS S YG G
Sbjct: 281 SCLYGGGGQY--FAK----------PQNQGGYGGSSSSSSYGSG 312
Score = 58.9 bits (141), Expect = 7e-09
Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 29/245 (11%)
Query: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
E+ P ++K+F+GG+ +T + LR+++E++G +M D + + R F FVT
Sbjct: 93 EDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVT 152
Query: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139
+ + D + + H V+G E ++A+S++ + + F GG
Sbjct: 153 FDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGG---RGGG 209
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199
++ D F G + G G+ D + Y+ NC
Sbjct: 210 FSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG---SSYNDFG--NC--- 261
Query: 200 KALSKQEMQSAGSQRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG 258
+ + G +G GNF G R +GGGG F + N +GGYGG S
Sbjct: 262 ----NNQSSNFGPMKG-----GNFGGKRSCLYGGGGQYFAKPQN---QGGYGGSSSSS-- 307
Query: 259 SYGGG 263
SYG G
Sbjct: 308 SYGSG 312
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 322 bits (825), Expect = 3e-88
Identities = 181/351 (51%), Positives = 216/351 (61%), Gaps = 58/351 (16%)
Query: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +PQTKRSR FGFVTYS VEE
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
DAAM A PH VDG VE KRAVSREDS +PGAH VKK+FVGG+K D E +L ++F ++
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
G +E E++ D+QSGKKRGF FV F +HD DK V K+H I GH EVKKA+ K+++ S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
Query: 210 AGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG 269
G GGGG RGG RGG G GGG +
Sbjct: 182 GG-------------------GGGGSRSSRGG----RGGRGRGGGRDQ------------ 206
Query: 270 FGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNY 329
+G + GGG GY+S GGYGGGG G N GG GGG Y GG+ G +GG
Sbjct: 207 ---NGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSY-----GGSDYGNGFGG---- 254
Query: 330 NDFGNYSGQQQSNYGPMK--------GGSFGGRSSGSPYGGGYGSGGGSGG 372
FG+YS Q QS+YGPMK G S+GGRS+ PY GGYG GGG GG
Sbjct: 255 --FGSYS-QHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
Score = 100 bits (250), Expect = 2e-21
Identities = 86/289 (29%), Positives = 117/289 (40%), Gaps = 72/289 (24%)
Query: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
E+ P +++KLF+GGL + + L EHF ++GT+ ++ D Q+ + RGFGFV
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 145
Query: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 142
+ + D A + H + G VE K+AV +ED G GG +
Sbjct: 146 FQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSS------ 191
Query: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
+ G+ RG D + + K Y++ G+
Sbjct: 192 ----------------RGGRGGRGRGGG----RDQNGLSKGGGGGYNSYGGYG------- 224
Query: 203 SKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
G GGG N +GGGGG G ++GG YG G GG GSY
Sbjct: 225 ------------GGGGGGYN------AYGGGGG----GSSYGG-SDYGNGFGGF-GSYSQ 260
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDG 311
Y GG GGG SS GG GP GGYGGGGGY G
Sbjct: 261 HQSSYGPMKSGGGGGGGG---SSWGGRSNSGP----YRGGYGGGGGYGG 302
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 207 bits (528), Expect = 1e-53
Identities = 114/302 (37%), Positives = 167/302 (55%), Gaps = 17/302 (5%)
Query: 12 PDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 71
P SG + G++ + K E K+F+GGLS++T+ L+++F K+G + DC + DP
Sbjct: 47 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 106
Query: 72 TKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVG 131
T RSRGFGF+ + V+ + + H++DGRV++PK+A++ + VKKIFVG
Sbjct: 107 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVG 159
Query: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
G+ + E +R+YF ++G+IE IE+ D + K+RGF F+TF + + V K++ +K+HT+
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV 219
Query: 192 NGHNCEVKKALSKQEMQSAGSQRGRGG-GSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYG 250
+G CE+K A K+ Q Q G GG G+ N RG GGGGG + N G G Y
Sbjct: 220 SGSKCEIKVAQPKEVYQQ--QQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWN-QGYGNYW 276
Query: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYD 310
G G + YG G GGY+ G YG GPGY Y G YG G Y
Sbjct: 277 NQGYGYQQGYGPGYGGYD--YSPYGYYGYGPGYD----YSQGSTNYGKSQRRGGHQNNYK 330
Query: 311 GY 312
Y
Sbjct: 331 PY 332
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/87 (41%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 289 YGGGGPGYGNQGG-GYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMK 347
YG GG G N+G G GGGGG G ++ N G GNY G Y QQ YGP
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQG-------YGYQQ--GYGPGY 290
Query: 348 GGSFGGRSSGSPYGGGYGSGGGSGGYG 374
GG YG GY GS YG
Sbjct: 291 GGYDYSPYGYYGYGPGYDYSQGSTNYG 317
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 200 bits (508), Expect = 2e-51
Identities = 114/298 (38%), Positives = 165/298 (55%), Gaps = 32/298 (10%)
Query: 13 DSGRRRRRRGEEGHDPKEPEQLR------KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66
D+ + G P+ E K+FIGGLS++TT L+++F K+G + DC +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
DP T RSRGFGFV + E VD M + HK++G+V++PKRA + + VK
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VK 182
Query: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
KIFVGG+ DT E +R+YF +G++E+IE+ D ++ K+RGF F+TF + + V KI+ +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGR 246
KYH + CE+K A+SK++ Q RGG +G GRG GG N+ +G +
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRG---GGPSQNWNQGYSNYWN 299
Query: 247 GGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 304
GY G+YG GY G+G G +Y GY++ GYG Y NQ GYG
Sbjct: 300 QGY--------GNYGYNSQGYGGYG--GYDY---TGYNNYYGYG----DYSNQQSGYG 340
Score = 29.3 bits (64), Expect = 6.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 316 GNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG 374
G F G G GG + N Q SNY G++G S G GGY G + YG
Sbjct: 273 GGFAGRARGRGGGPSQNWN---QGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG 328
Score = 28.9 bits (63), Expect = 8.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 199 bits (507), Expect = 3e-51
Identities = 112/276 (40%), Positives = 160/276 (57%), Gaps = 26/276 (9%)
Query: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
K E K+FIGGLS++TT L+++F K+G + DC + DP T RSRGFGFV + E
Sbjct: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
Query: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
VD M + HK++G+V++PKRA + + VKKIFVGG+ DT E +R+YF
Sbjct: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185
Query: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
+G++E+IE+ D ++ K+RGF F+TF + + V KI+ +KYH + CE+K A+SK++ Q
Sbjct: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245
Query: 209 SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYN 268
RGG +G GRG GG N+ +G + GY G+YG GY
Sbjct: 246 QQQQWGSRGGFAGRARGRG---GGPSQNWNQGYSNYWNQGY--------GNYGYNSQGYG 294
Query: 269 GFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 304
G+G G +Y GY++ GYG Y NQ GYG
Sbjct: 295 GYG--GYDY---TGYNNYYGYG----DYSNQQSGYG 321
Score = 29.3 bits (64), Expect = 6.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 316 GNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG 374
G F G G GG + N Q SNY G++G S G GGY G + YG
Sbjct: 254 GGFAGRARGRGGGPSQNWN---QGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG 309
Score = 28.9 bits (63), Expect = 8.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 198 bits (503), Expect = 8e-51
Identities = 112/317 (35%), Positives = 166/317 (52%), Gaps = 34/317 (10%)
Query: 22 GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
G + + K + K+FIGGLS++T+ L E+ ++G + DC + DP T RSRGFGFV
Sbjct: 135 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 194
Query: 82 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN 141
+ VD + + HK+DG++++PKRA + + P KK+FVGG+ DT E
Sbjct: 195 LFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQ 248
Query: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
+++YF +G+IE IE+ D ++ ++RGF F+T+ D + V K++ +YH I CE+K A
Sbjct: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
Query: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
K E+ Q+ +GG RG GGRGG G G G ++
Sbjct: 309 QPK-EVYRQQQQQQKGG--------------------RGAAAGGRGGTRGRGRGQGQNWN 347
Query: 262 GGDGGY--NGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYN-EGGNF 318
G Y G+G YGG YS GGY G YGN YG G GY Y+ + +
Sbjct: 348 QGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGN----YGYGQGYADYSGQQSTY 403
Query: 319 GGGNYGGGGNYNDFGNY 335
G + GGG + N++ Y
Sbjct: 404 GKASRGGGNHQNNYQPY 420
Score = 38.5 bits (88), Expect = 0.010
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 299 QGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYND-FGNYSGQQQSNYGPMKGGSFGGRSSG 357
Q GG G G GG G G G G N+N F NY Q NY ++GG +
Sbjct: 321 QKGGRGAAAG----GRGGTRGRGR-GQGQNWNQGFNNYYDQGYGNY----NSAYGGDQNY 371
Query: 358 SPYGGGYGSGGGSGGYG 374
S YGG +G G YG
Sbjct: 372 SGYGGYDYTGYNYGNYG 388
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 183 bits (465), Expect = 2e-46
Identities = 91/241 (37%), Positives = 143/241 (59%), Gaps = 12/241 (4%)
Query: 12 PDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 71
P SG + G++ + K E K+F+GGLS++T+ L+++F K+G + DC + DP
Sbjct: 47 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 106
Query: 72 TKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVG 131
T RSRGFGF+ + V+ + + H++DGRV++PK+A++ + VKKIFVG
Sbjct: 107 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVG 159
Query: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
G+ + E +R+YF ++G+IE IE+ D + K+RGF F+TF + + V K++ +K+HT+
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV 219
Query: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFG---GRGG 248
+G CE+K A K+ Q Q G GG G G+ GGGGG N+G RGG
Sbjct: 220 SGSKCEIKVAQPKEVYQQ--QQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGG 277
Query: 249 Y 249
+
Sbjct: 278 H 278
Score = 36.6 bits (83), Expect = 0.038
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 289 YGGGGPGYGNQGG-GYGGGGGYDGYNEGGNFGGGNYG----GGGNYNDFGNY 335
YG GG G N+G G GGGGG GG G NYG GG+ N++ Y
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGG------GGGQGSTNYGKSQRRGGHQNNYKPY 285
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 277 YG-GGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
YG GG G +RG G GG GG GGG G Y + GG
Sbjct: 240 YGSGGRGNRNRGNRGSGG-------GGGGGGQGSTNYGKSQRRGG 277
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 339 QQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 378
QQ YG GGR + + G G GGG GG GS +
Sbjct: 236 QQQQYGS------GGRGNRNRGNRGSGGGGGGGGQGSTNY 269
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 182 bits (463), Expect = 3e-46
Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 12/235 (5%)
Query: 13 DSGRRRRRRGEEGHDPKEPEQLR------KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66
D+ + G P+ E K+FIGGLS++TT L+++F K+G + DC +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
DP T RSRGFGFV + E VD M + HK++G+V++PKRA + + VK
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VK 182
Query: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
KIFVGG+ DT E +R+YF +G++E+IE+ D ++ K+RGF F+TF + + V KI+ +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGG 241
KYH + CE+K A+SK++ Q RGG +G GRGG+ G G R G
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRG 297
Score = 28.9 bits (63), Expect = 8.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 182 bits (462), Expect = 4e-46
Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 6/213 (2%)
Query: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
K E K+FIGGLS++TT L+++F K+G + DC + DP T RSRGFGFV + E
Sbjct: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
Query: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
VD M + HK++G+V++PKRA + + VKKIFVGG+ DT E +R+YF
Sbjct: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185
Query: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
+G++E+IE+ D ++ K+RGF F+TF + + V KI+ +KYH + CE+K A+SK++ Q
Sbjct: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245
Query: 209 SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGG 241
RGG +G GRGG+ G G R G
Sbjct: 246 QQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRG 278
Score = 28.9 bits (63), Expect = 8.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 167 bits (422), Expect = 2e-41
Identities = 119/339 (35%), Positives = 162/339 (47%), Gaps = 29/339 (8%)
Query: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
HDP K+FIGGLS++T+ DSLR++F K+G + +C+VMRDP TKRSRGFGFVT++
Sbjct: 18 HDPG------KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
Query: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
VD + H++D + ++PK A R +P KKIFVGG+ +T +++ Y
Sbjct: 72 PASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQY 129
Query: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
FE++GK+E +M D+ + + RGF FVTF++ D V+K+ +H IN E KKA K+
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
Query: 206 EMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDG 265
M G+ RGR G M F G G G NF YG G G SY
Sbjct: 190 VMFPPGT-RGRARGLPYTMDA---FMLGMGMLGY-PNFVAT--YGRGYPGFAPSY----- 237
Query: 266 GYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGG 325
GY G YG + G G GG+ G N G YG
Sbjct: 238 GYQFPGFPAAAYGPVAAAAVAAARG--------SGSNPARPGGFPGANSPGPV-ADLYGP 288
Query: 326 GGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 364
+ GNY G G G + + GY
Sbjct: 289 ASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGY 327
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 164 bits (415), Expect = 1e-40
Identities = 88/212 (41%), Positives = 124/212 (58%), Gaps = 18/212 (8%)
Query: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
P PG PDS HDP K+FIGGLS++TT + LRE+F ++G + +C
Sbjct: 6 PQPGLASPDSP----------HDPC------KMFIGGLSWQTTQEGLREYFGQFGEVKEC 49
Query: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT 124
+VMRDP TKRSRGFGFVT+ VD + H++D + ++PK A R +P
Sbjct: 50 LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTR 107
Query: 125 VKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
KKIFVGG+ +T +++ YFE++GK++ +M D+ + + RGF FVTF+ D V+K+
Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Query: 185 VQKYHTINGHNCEVKKALSKQEMQSAGSQRGR 216
+H IN E KKA K+ M GS RGR
Sbjct: 168 EIHFHEINNKMVECKKAQPKEVMSPTGSARGR 199
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 160 bits (405), Expect = 2e-39
Identities = 95/226 (42%), Positives = 133/226 (58%), Gaps = 9/226 (3%)
Query: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
K+FIGGLS++T+ DSLR++F K+G + +C+VMRDP TKRSRGFGFVT++ VD +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
H++D + ++PK A R +P KKIFVGG+ +T +++ YFE++GK+E
Sbjct: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRG 215
+M D+ + + RGF FVTF++ D V+K+ +H IN E KKA K+ M G+ RG
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGT-RG 194
Query: 216 RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
R G M F G G G NF YG G G SYG
Sbjct: 195 RARGLPYTMDA---FMLGMGMLGY-PNFVAT--YGRGYPGFAPSYG 234
Score = 70.1 bits (170), Expect = 3e-12
Identities = 33/93 (35%), Positives = 57/93 (61%)
Query: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
PK + +K+F+GGLS T + ++++FE++G + D ++M D T R RGFGFVT+ +
Sbjct: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
Query: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 120
V+ H+++ ++VE K+A +E PG
Sbjct: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 147 bits (372), Expect = 1e-35
Identities = 121/334 (36%), Positives = 151/334 (45%), Gaps = 91/334 (27%)
Query: 128 IFVGGIKEDTEEYNLRDYFEKYGKIET--------IEVMEDRQSGKKRGFAFVTFDDHDT 179
IFV G+ E + ++F++ G I+T I + D+ +GK +G A V+FDD +
Sbjct: 233 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 292
Query: 180 ----VDKIVVQKYHTINGHNCEVKKALSKQEMQ----SAGSQRGRGG--GSGNFMGRGGN 229
+D +++H G+ +V A + E S G +RGRGG G G F GRGG+
Sbjct: 293 AKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGD 349
Query: 230 ----------------------------------------------FGGGGGNFGRGGNF 243
+GG G GRGG
Sbjct: 350 PKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRG 409
Query: 244 GGRGGYGG-----GGGGSRGSYGG--GDGGYNGFGGD--GGNYGGGPGYSSRGGYGGG-G 293
G RGGYGG G GG R S GG GD G+GGD GG YGG G GGYGG G
Sbjct: 410 GDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRG----GGYGGDRG 465
Query: 294 PGYG-NQGGGYGGGGGYDGYNEGGNFGG--GNYGG--GGNYNDFGNYSGQQQSNYGPMKG 348
GYG ++GGGYGG G G + GG +GG G YGG GG D G Y G + G
Sbjct: 466 GGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSR 525
Query: 349 GSFGG-RSSGSPYG----GGYGSGGGSGGYGSRR 377
G +GG R GS YG GGYG GGYG R
Sbjct: 526 GGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 559
Score = 119 bits (298), Expect = 4e-27
Identities = 76/160 (47%), Positives = 86/160 (53%), Gaps = 21/160 (13%)
Query: 211 GSQRGRGGG-SGNFMGRG--GNFGGGGGNFGRGGNFGGR--GGYGG----GGGGSRGSYG 261
G R GGG SG+ G G G+ GGG RGG +GG GGYGG G GG RG YG
Sbjct: 425 GGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYG 484
Query: 262 GGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGG---GGYDGYNEGGN- 317
G GG G+GGD G YGG RGGYGG GYG GGYGG GGY G GG+
Sbjct: 485 GDRGG--GYGGDRGGYGG-----DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSG 537
Query: 318 FGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSG 357
+GG GG G G Y G + YG +GG +GG+ G
Sbjct: 538 YGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGG-YGGKMGG 576
Score = 117 bits (292), Expect = 2e-26
Identities = 77/146 (52%), Positives = 87/146 (59%), Gaps = 20/146 (13%)
Query: 208 QSAGSQRGRGGGSGNFMGRGGNFGGG-GGNFG--RGGNFGG-RGGYGG----GGGGSRGS 259
+S G G G G RGG +GG GG +G RGG +GG RGGYGG G GG RG
Sbjct: 438 RSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 497
Query: 260 YGGGDGGYNG-FGGDGGNYGGGPGYSSRGGYG---GGGPGY-GNQGGGYGG---GGGYDG 311
YGG GGY G GG GG+ GG G SRGGYG GGG GY G++ GGYGG GGGY G
Sbjct: 498 YGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGG 557
Query: 312 YNEGGNFGG--GNYGGG-GNYNDFGN 334
+ GG +GG G YGG G ND+ N
Sbjct: 558 -DRGGGYGGDRGGYGGKMGGRNDYRN 582
Score = 85.5 bits (210), Expect = 7e-17
Identities = 59/114 (51%), Positives = 63/114 (55%), Gaps = 12/114 (10%)
Query: 211 GSQRGRGGGSGNFMG--RGGNFGGGGGNFG-RGGNFGGRGGYGGGGGGSRGSYGGGDGGY 267
G + G GG G G RGG G GG G RGG G RGGY GG SRG YGG GG
Sbjct: 478 GDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGY--GGDRSRGGYGGDRGGG 535
Query: 268 NGFGGD-GGNYGGGPGYSSRGGYGGG-GPGYGNQGGGYGG--GGGYDGYNEGGN 317
+G+GGD G YGG S GGYGG G GYG GGYGG GG D N+ N
Sbjct: 536 SGYGGDRSGGYGGD---RSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYRNDQRN 586
Score = 45.4 bits (106), Expect = 8e-05
Identities = 56/225 (24%), Positives = 70/225 (31%), Gaps = 79/225 (35%)
Query: 224 MGRGGNFGGGGG---NFGRGGNFGGRG------GYGGGGGGSRGSYGGGDGGYNGFGGD- 273
M G++G GG ++ GN G +G Y G G + SYG GY+ +G
Sbjct: 1 MSDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSY 60
Query: 274 ----GG---------------NYGGGPGYSSRGGYGGGGPGYGN----QGGGYGGGGGYD 310
GG N G S G GG P Y Q Y GYD
Sbjct: 61 SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYD 120
Query: 311 ----GYNEGGNF-----------------------------------GGGNYGGGGNYND 331
Y+E N+ G N G GG+
Sbjct: 121 QHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGG 180
Query: 332 FGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR 376
G + GPM G S G R GG+ + GG YG R
Sbjct: 181 GRGRGGYDKDGRGPMTGSSGGDR-------GGFKNFGGHRDYGPR 218
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/145 (27%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 204 KQEMQSAGSQRGRGGGSGN-FMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
+Q M+S+GSQ GR G+ ++ G G++ + Y SY
Sbjct: 86 QQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQ----QHDSYSQ 141
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSR--GGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
Y+ NY R YG GYG GG G GGYD G G
Sbjct: 142 NQQSYHS---QRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTG- 197
Query: 321 GNYGGGGNYNDFGNYSGQQQSNYGP 345
GG+ F N+ G + +YGP
Sbjct: 198 ---SSGGDRGGFKNFGGHR--DYGP 217
Score = 36.2 bits (82), Expect = 0.050
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT----I 191
D +Y +D +++ + + D QS + HD+ + Q YH+
Sbjct: 103 DQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQ--------QHDSYSQNQ-QSYHSQRENY 153
Query: 192 NGHNCEVKKALSK--QEMQSAGSQRGRGGGSGNFM--GRGGNFGGGGGNFGRGGNFGGRG 247
+ H + ++ +S+ ++ + G +G G G G + GRG G GG+ G NFGG
Sbjct: 154 SHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 213
Query: 248 GYG 250
YG
Sbjct: 214 DYG 216
Score = 32.0 bits (71), Expect = 0.94
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 253 GGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGY 312
G +RG YGG GG G GG + G GP S GG GG + N GG G D
Sbjct: 168 GEDNRG-YGGSQGGGRGRGGYDKD-GRGPMTGSSGGDRGG---FKNFGGHRDYGPRTDAD 222
Query: 313 NEGGN 317
+E N
Sbjct: 223 SESDN 227
Score = 30.0 bits (66), Expect = 3.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 209 SAGSQRGRGG----GSGNFMGRGGNFGGGGGNFGRGGNFGGR 246
S G RGRGG G G G G GG NFG ++G R
Sbjct: 177 SQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPR 218
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 147 bits (372), Expect = 1e-35
Identities = 121/334 (36%), Positives = 151/334 (45%), Gaps = 91/334 (27%)
Query: 128 IFVGGIKEDTEEYNLRDYFEKYGKIET--------IEVMEDRQSGKKRGFAFVTFDDHDT 179
IFV G+ E + ++F++ G I+T I + D+ +GK +G A V+FDD +
Sbjct: 236 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 295
Query: 180 ----VDKIVVQKYHTINGHNCEVKKALSKQEMQ----SAGSQRGRGG--GSGNFMGRGGN 229
+D +++H G+ +V A + E S G +RGRGG G G F GRGG+
Sbjct: 296 AKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGD 352
Query: 230 ----------------------------------------------FGGGGGNFGRGGNF 243
+GG G GRGG
Sbjct: 353 PKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRG 412
Query: 244 GGRGGYGG-----GGGGSRGSYGG--GDGGYNGFGGD--GGNYGGGPGYSSRGGYGGG-G 293
G RGGYGG G GG R S GG GD G+GGD GG YGG G GGYGG G
Sbjct: 413 GDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRG----GGYGGDRG 468
Query: 294 PGYG-NQGGGYGGGGGYDGYNEGGNFGG--GNYGG--GGNYNDFGNYSGQQQSNYGPMKG 348
GYG ++GGGYGG G G + GG +GG G YGG GG D G Y G + G
Sbjct: 469 GGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSR 528
Query: 349 GSFGG-RSSGSPYG----GGYGSGGGSGGYGSRR 377
G +GG R GS YG GGYG GGYG R
Sbjct: 529 GGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 562
Score = 119 bits (298), Expect = 4e-27
Identities = 76/160 (47%), Positives = 86/160 (53%), Gaps = 21/160 (13%)
Query: 211 GSQRGRGGG-SGNFMGRG--GNFGGGGGNFGRGGNFGGR--GGYGG----GGGGSRGSYG 261
G R GGG SG+ G G G+ GGG RGG +GG GGYGG G GG RG YG
Sbjct: 428 GGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYG 487
Query: 262 GGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGG---GGYDGYNEGGN- 317
G GG G+GGD G YGG RGGYGG GYG GGYGG GGY G GG+
Sbjct: 488 GDRGG--GYGGDRGGYGG-----DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSG 540
Query: 318 FGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSG 357
+GG GG G G Y G + YG +GG +GG+ G
Sbjct: 541 YGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGG-YGGKMGG 579
Score = 117 bits (292), Expect = 2e-26
Identities = 77/146 (52%), Positives = 87/146 (59%), Gaps = 20/146 (13%)
Query: 208 QSAGSQRGRGGGSGNFMGRGGNFGGG-GGNFG--RGGNFGG-RGGYGG----GGGGSRGS 259
+S G G G G RGG +GG GG +G RGG +GG RGGYGG G GG RG
Sbjct: 441 RSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 500
Query: 260 YGGGDGGYNGF-GGDGGNYGGGPGYSSRGGYG---GGGPGY-GNQGGGYGG---GGGYDG 311
YGG GGY G GG GG+ GG G SRGGYG GGG GY G++ GGYGG GGGY G
Sbjct: 501 YGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGG 560
Query: 312 YNEGGNFGG--GNYGGG-GNYNDFGN 334
+ GG +GG G YGG G ND+ N
Sbjct: 561 -DRGGGYGGDRGGYGGKMGGRNDYRN 585
Score = 85.5 bits (210), Expect = 7e-17
Identities = 59/114 (51%), Positives = 63/114 (55%), Gaps = 12/114 (10%)
Query: 211 GSQRGRGGGSGNFMG--RGGNFGGGGGNFG-RGGNFGGRGGYGGGGGGSRGSYGGGDGGY 267
G + G GG G G RGG G GG G RGG G RGGY GG SRG YGG GG
Sbjct: 481 GDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGY--GGDRSRGGYGGDRGGG 538
Query: 268 NGFGGD-GGNYGGGPGYSSRGGYGGG-GPGYGNQGGGYGG--GGGYDGYNEGGN 317
+G+GGD G YGG S GGYGG G GYG GGYGG GG D N+ N
Sbjct: 539 SGYGGDRSGGYGGD---RSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYRNDQRN 589
Score = 45.4 bits (106), Expect = 8e-05
Identities = 58/228 (25%), Positives = 73/228 (32%), Gaps = 82/228 (35%)
Query: 224 MGRGGNFGGGGG---NFGRGGNFGGRG------GYGGGGGGSRGSYGGGDGGYNGFG--- 271
M G++G GG ++ GN G +G Y G G + SYG GY+ +G
Sbjct: 1 MSDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQ 60
Query: 272 -GDGGNYGG-----GPGYS--------------SRGGYGGGGPGYGN----QGGGYGGGG 307
G +YGG YS S G GG P Y Q Y
Sbjct: 61 SGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQS 120
Query: 308 GYD----GYNEGGNF-----------------------------------GGGNYGGGGN 328
GYD Y+E N+ G N G GG+
Sbjct: 121 GYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGS 180
Query: 329 YNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR 376
G + GPM G S G R GG+ + GG YG R
Sbjct: 181 QGGGRGRGGYDKDGRGPMTGSSGGDR-------GGFKNFGGHRDYGPR 221
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/145 (27%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 204 KQEMQSAGSQRGRGGGSGN-FMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
+Q M+S+GSQ GR G+ ++ G G++ + Y SY
Sbjct: 89 QQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQ----QHDSYSQ 144
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSR--GGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
Y+ NY R YG GYG GG G GGYD G G
Sbjct: 145 NQQSYHS---QRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTG- 200
Query: 321 GNYGGGGNYNDFGNYSGQQQSNYGP 345
GG+ F N+ G + +YGP
Sbjct: 201 ---SSGGDRGGFKNFGGHR--DYGP 220
Score = 36.2 bits (82), Expect = 0.050
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT----I 191
D +Y +D +++ + + D QS + HD+ + Q YH+
Sbjct: 106 DQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQ--------QHDSYSQNQ-QSYHSQRENY 156
Query: 192 NGHNCEVKKALSK--QEMQSAGSQRGRGGGSGNFM--GRGGNFGGGGGNFGRGGNFGGRG 247
+ H + ++ +S+ ++ + G +G G G G + GRG G GG+ G NFGG
Sbjct: 157 SHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 216
Query: 248 GYG 250
YG
Sbjct: 217 DYG 219
Score = 32.0 bits (71), Expect = 0.94
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 253 GGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGY 312
G +RG YGG GG G GG + G GP S GG GG + N GG G D
Sbjct: 171 GEDNRG-YGGSQGGGRGRGGYDKD-GRGPMTGSSGGDRGG---FKNFGGHRDYGPRTDAD 225
Query: 313 NEGGN 317
+E N
Sbjct: 226 SESDN 230
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 141 bits (355), Expect = 1e-33
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 12/196 (6%)
Query: 32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 91
+++ KLF+GGL + TT ++LR +F ++G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 92 AMCARPHKVDGRVVEPKRAVSR---EDSVKP---------GAHLTVKKIFVGGIKEDTEE 139
+ +RPH +DGR ++PK R + +P + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199
LR+YF+K+G + + ++ D + + RGF F+TF+D +VD+ V +H I G EVK
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 200 KALSKQEMQSAGSQRG 215
+A + A Q G
Sbjct: 187 RAEPRDSKSQAPGQPG 202
Score = 72.8 bits (177), Expect = 5e-13
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 3 VKPPPGRP---QPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWG 59
+ P P P QP+ R R + G + + + K+F+GG+ + LRE+F+K+G
Sbjct: 80 IDPKPCTPRGMQPE--RTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFG 137
Query: 60 TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED-SVK 118
+T+ V++ D + +R RGFGF+T+ + VD A+ H + G+ VE KRA R+ S
Sbjct: 138 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQA 197
Query: 119 PG 120
PG
Sbjct: 198 PG 199
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 141 bits (355), Expect = 1e-33
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 12/196 (6%)
Query: 32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 91
+++ KLF+GGL + TT ++LR +F ++G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 92 AMCARPHKVDGRVVEPKRAVSR---EDSVKP---------GAHLTVKKIFVGGIKEDTEE 139
+ +RPH +DGR ++PK R + +P + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199
LR+YF+K+G + + ++ D + + RGF F+TF+D +VD+ V +H I G EVK
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 200 KALSKQEMQSAGSQRG 215
+A + A Q G
Sbjct: 187 RAEPRDSKSQAPGQPG 202
Score = 72.8 bits (177), Expect = 5e-13
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 3 VKPPPGRP---QPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWG 59
+ P P P QP+ R R + G + + + K+F+GG+ + LRE+F+K+G
Sbjct: 80 IDPKPCTPRGMQPE--RTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFG 137
Query: 60 TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED-SVK 118
+T+ V++ D + +R RGFGF+T+ + VD A+ H + G+ VE KRA R+ S
Sbjct: 138 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQA 197
Query: 119 PG 120
PG
Sbjct: 198 PG 199
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 265 GGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
G Y G+G D +G G S+ GGP GG GG G+ G + N G
Sbjct: 347 GQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGF-GRGQNHNVQG 401
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 139 bits (349), Expect = 5e-33
Identities = 82/190 (43%), Positives = 99/190 (52%), Gaps = 11/190 (5%)
Query: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGG 245
Q+Y + ++K + G Q +G GG GG GG++GRG G
Sbjct: 435 QEYSLLLSIKMRLEKEIETYHNLLEGGQEDFESSGAGKIGLGGR-GGSGGSYGRGSRGGS 493
Query: 246 RGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGG 305
G YGGGG G G YGGG G GG GG+YGGG G GG GGG G G+ GG GG
Sbjct: 494 GGSYGGGGSG--GGYGGGSGSR---GGSGGSYGGGSG---SGGGSGGGYGGGSGGGHSGG 545
Query: 306 GGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGS-FGGRSSGSPYGGGY 364
GG GGN+GGG+ GGG+ +G SG + + G GGS FGG S GS YGGG
Sbjct: 546 SGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGS-YGGGE 604
Query: 365 GSGGGSGGYG 374
+ G GGYG
Sbjct: 605 EASGSGGGYG 614
Score = 130 bits (327), Expect = 2e-30
Identities = 76/179 (42%), Positives = 95/179 (53%), Gaps = 27/179 (15%)
Query: 204 KQEMQSAGSQR----GRGGGSGNFM-----GRGGNFGGGGGNFGRGGNFGGRGGYGGGGG 254
+++ +S+G+ + GRGG G++ G GG++GGGG G GG G RGG GG G
Sbjct: 462 QEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYG 521
Query: 255 GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNE 314
G GS GG GGY G G GG + GG G GG+ GG GN GGG G GGG
Sbjct: 522 GGSGSGGGSGGGYGG--GSGGGHSGGSG----GGHSGGSG--GNYGGGSGSGGG-----S 568
Query: 315 GGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGY 373
GG +GGG+ GG+ G SG +G GGS+GG S GGGYG G G +
Sbjct: 569 GGGYGGGSGSRGGSGGSHGGGSG-----FGGESGGSYGGGEEASGSGGGYGGGSGKSSH 622
Score = 108 bits (269), Expect = 1e-23
Identities = 69/135 (51%), Positives = 74/135 (54%), Gaps = 17/135 (12%)
Query: 245 GRGGYG-GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGY 303
G G G GG GGS GSYG G G G GG+YGGG S GGYGGG G GG Y
Sbjct: 469 GAGKIGLGGRGGSGGSYGRGSRG-----GSGGSYGGG---GSGGGYGGGSGSRGGSGGSY 520
Query: 304 GGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
GGG G G GG +GGG+ GGG + G +SG NYG GGS G SG YGGG
Sbjct: 521 GGGSGSGG-GSGGGYGGGS-GGGHSGGSGGGHSGGSGGNYG---GGSGSGGGSGGGYGGG 575
Query: 364 YGS---GGGSGGYGS 375
GS GGS G GS
Sbjct: 576 SGSRGGSGGSHGGGS 590
Score = 100 bits (248), Expect = 3e-21
Identities = 64/134 (47%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 250 GGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGG------Y 303
GGGGGG GS G Y+ F GG GGG +SS GYGGG +GGG Y
Sbjct: 15 GGGGGGGLGSGGSIRSSYSRFSSSGGG-GGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSY 73
Query: 304 GGG--GGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG 361
GGG GG+ + GG FGGG+ G FG SG S+ G GG FGG SG +G
Sbjct: 74 GGGSGGGFSASSLGGGFGGGSRG-------FGGASGGGYSSSGGF-GGGFGG-GSGGGFG 124
Query: 362 GGYGSG-GGSGGYG 374
GGYGSG GG GG+G
Sbjct: 125 GGYGSGFGGFGGFG 138
Score = 99.0 bits (245), Expect = 6e-21
Identities = 68/154 (44%), Positives = 75/154 (48%), Gaps = 35/154 (22%)
Query: 217 GGGSGNFMGRGGNF----------GGGGGNFGRGGNFGGRGGYGGG--------GGGSRG 258
GGG G +G GG+ GGGGG GG F GYGGG GGGS G
Sbjct: 15 GGGGGGGLGSGGSIRSSYSRFSSSGGGGG----GGRFSSSSGYGGGSSRVCGRGGGGSFG 70
Query: 259 -SYGGGDGGY-------NGFGGDGGNYGG--GPGYSSRGGYGGGGPGYGNQGGGYGGGGG 308
SYGGG GG GFGG +GG G GYSS GG+GGG G GGG+GGG G
Sbjct: 71 YSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGG--GSGGGFGGGYG 128
Query: 309 YDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSN 342
G+ G FGGG GG G S Q+ N
Sbjct: 129 -SGFGGFGGFGGGAGGGDGGILTANEKSTMQELN 161
Score = 98.2 bits (243), Expect = 1e-20
Identities = 55/110 (50%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 211 GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGR-GGYGGGGGGSRGSYGGGDGGYNG 269
GS GGGSG+ G GG +GGG G GG+ GG GG GG GG GS GG GGY G
Sbjct: 515 GSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGG 574
Query: 270 F----GGDGGNYGGGPGYS--SRGGYGGGGPGYGNQGGGYGGGGGYDGYN 313
GG GG++GGG G+ S G YGGG G+ GGGYGGG G ++
Sbjct: 575 GSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGS-GGGYGGGSGKSSHS 623
Score = 93.2 bits (230), Expect = 3e-19
Identities = 51/99 (51%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 212 SQRGRGGGSGNFMGRGG--NFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG 269
S G GGGS GRGG +FG G G GG F GG GGGSRG G GGY+
Sbjct: 49 SSSGYGGGSSRVCGRGGGGSFGYSYGG-GSGGGFSASSLGGGFGGGSRGFGGASGGGYSS 107
Query: 270 FGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGG 308
GG GG +GGG G GGYG G G+G GGG GGG G
Sbjct: 108 SGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDG 146
Score = 59.3 bits (142), Expect = 5e-09
Identities = 33/66 (50%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 215 GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG 274
G GGGS F G G GG + G GG FG GG GGG G YG G GG+ GFGG
Sbjct: 89 GFGGGSRGFGGASG--GGYSSSGGFGGGFG-----GGSGGGFGGGYGSGFGGFGGFGGGA 141
Query: 275 GNYGGG 280
G GG
Sbjct: 142 GGGDGG 147
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/65 (53%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 211 GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGF 270
G RG GG SG G FGGG G G GG FG GGYG G GG G +GGG G
Sbjct: 92 GGSRGFGGASGGGYSSSGGFGGGFGG-GSGGGFG--GGYGSGFGGF-GGFGGGAG----- 142
Query: 271 GGDGG 275
GGDGG
Sbjct: 143 GGDGG 147
Score = 55.5 bits (132), Expect = 8e-08
Identities = 39/99 (39%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 283 YSSRGGYGGGGPGYGNQGGGYGGGGGY-DGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQS 341
Y SR G GGGG G G GG Y+ + GGG GGGG ++ Y G
Sbjct: 10 YLSRSGGGGGG--------GLGSGGSIRSSYSRFSSSGGG--GGGGRFSSSSGYGGGSSR 59
Query: 342 NYGPMKGGSFGGRSSGSPYGG------GYGSGGGSGGYG 374
G GGSFG G GG G G GGGS G+G
Sbjct: 60 VCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFG 98
Score = 42.4 bits (98), Expect = 7e-04
Identities = 27/58 (46%), Positives = 29/58 (50%), Gaps = 18/58 (31%)
Query: 209 SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266
S G G GGGSG G GG +G G FGG GG+GGG GGGDGG
Sbjct: 108 SGGFGGGFGGGSGG--GFGGGYGSG---------FGGFGGFGGGA-------GGGDGG 147
Score = 35.4 bits (80), Expect = 0.085
Identities = 31/74 (41%), Positives = 33/74 (44%), Gaps = 20/74 (27%)
Query: 309 YDGYNEGG-----NFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363
Y EGG + G G G GG G+Y GS GG SG YGGG
Sbjct: 454 YHNLLEGGQEDFESSGAGKIGLGGRGGSGGSYGR-----------GSRGG--SGGSYGGG 500
Query: 364 YGSGGG-SGGYGSR 376
GSGGG GG GSR
Sbjct: 501 -GSGGGYGGGSGSR 513
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 138 bits (347), Expect = 9e-33
Identities = 74/123 (60%), Positives = 84/123 (68%), Gaps = 12/123 (9%)
Query: 261 GGGDGGYNGFGGDGGNYGGGPGYSSRG-GYGGGGPGYGNQGGGYGGGGGYDGYNEGG--N 317
G GDG YNGFG DGG GGGPGYS GYG G GYG+QG GYGG G Y+ YN GG +
Sbjct: 46 GRGDG-YNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGS 104
Query: 318 FGGGN---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG---YGSGGGSG 371
FGGG+ +GG G+YNDFGNY+ Q SN+GP KGG+FGGRSS P GGG + G
Sbjct: 105 FGGGSGSSFGGSGSYNDFGNYN-NQSSNFGPTKGGNFGGRSS-VPCGGGGQYFVKPQNQG 162
Query: 372 GYG 374
GYG
Sbjct: 163 GYG 165
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/139 (41%), Positives = 67/139 (48%), Gaps = 22/139 (15%)
Query: 215 GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYG--GGGGGSRGSYGGGDGGYNGFG- 271
GRG G F G G +GGGG + GG GYG G G GS+GS GG G YN +
Sbjct: 46 GRGDGYNGF-GNDGGYGGGGPGYS-----GGSRGYGSVGQGYGSQGSGYGGSGSYNSYNN 99
Query: 272 GDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN---YGGGGN 328
G GG++GGG G S GG G N G Y G +GGNFGG + GGGG
Sbjct: 100 GGGGSFGGGSGSSF------GGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQ 153
Query: 329 Y----NDFGNYSGQQQSNY 343
Y + G Y G S +
Sbjct: 154 YFVKPQNQGGYGGSSSSRH 172
Score = 58.9 bits (141), Expect = 7e-09
Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 210 AGSQRGRGGGSGNFMGRGGNFGGGGG----NFGRGGNFGGRGGYGGGGGGSRGSYGGGDG 265
+G RG G + +G +GG G N G GG+FGG G GG GS +G +
Sbjct: 68 SGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNN 127
Query: 266 GYNGFG-GDGGNYGGGPGYSSRGGYGGGGPGY--GNQGGGYGGGGGYDGYNE 314
+ FG GGN+GG S GGGG + GGYGG Y +
Sbjct: 128 QSSNFGPTKGGNFGG----RSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQD 175
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 118 bits (296), Expect = 8e-27
Identities = 85/187 (45%), Positives = 97/187 (51%), Gaps = 21/187 (11%)
Query: 207 MQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266
++++G G GG G G G G GGG+ G G + G GGY GGG G GS GGG GG
Sbjct: 17 VKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGG-GSSGGGGGG 75
Query: 267 YNGFGGDGGNYGGGPGYSSRGGYGGGGPG-YGNQGGGYG----GGGGYDGYNEG--GNFG 319
G GG GG GG YS GG GGG G + + GGG G GGGG G G + G
Sbjct: 76 --GIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGG 133
Query: 320 GGNYGGGGN--YNDFGNYSGQQ---QSNYGPMKGGSFGGRSSGSPYGGGYG-----SGGG 369
GG+ GGG + G +SGQ QS G GGS GG S GGG G SGGG
Sbjct: 134 GGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGG 193
Query: 370 SG-GYGS 375
SG G GS
Sbjct: 194 SGCGGGS 200
Score = 107 bits (267), Expect = 2e-23
Identities = 81/203 (39%), Positives = 93/203 (45%), Gaps = 42/203 (20%)
Query: 211 GSQRGRGGGSGNFMGRGGNFGGG--GGNFGRGGNFGGRGGYGGGGGGS------RGSYGG 262
G G GSG GG + GG GG GG GG GG GGG GGS GS GG
Sbjct: 40 GGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGG 99
Query: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYG----GGGPGYGNQGGGYG----GGGG------ 308
G G ++ GG G + G G SS GG G GGG G+ GGG G GGGG
Sbjct: 100 GSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGG---GSSGGGSGCFSSGGGGFSGQAV 156
Query: 309 ----YDGYNEGGNFGGGN--YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG--------R 354
Y G + GG+ GGG+ + GG YSG G GGS G +
Sbjct: 157 QCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQ 216
Query: 355 SSGSP---YGGGYGSGGGSGGYG 374
+S +P YGGG GGGSGG G
Sbjct: 217 TSCAPQPSYGGGSSGGGGSGGSG 239
Score = 99.8 bits (247), Expect = 4e-21
Identities = 77/196 (39%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 210 AGSQRGRGGGSGNFMGRGGNFG----GGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDG 265
+G GGGSG F GG G GGGG+ G G GG G GGGS G + G G
Sbjct: 91 SGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGS-GCFSSGGG 149
Query: 266 GYNG-------FGG--DGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGG 316
G++G +GG GG+ GGG G S GG GG GY GGG G GGG G + G
Sbjct: 150 GFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYS--GGGSGCGGGSSGGSGSG 207
Query: 317 ----------------NFGGGNYGGGGNYND--FGNYSGQQQSNYGPMKGGSFGGRSSGS 358
++GGG+ GGGG+ F + G S G GGS G S
Sbjct: 208 YVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCG---GGSSGIGSGCI 264
Query: 359 PYGGGYGSGGGSGGYG 374
GGG GGGS G G
Sbjct: 265 ISGGGSVCGGGSSGGG 280
Score = 99.4 bits (246), Expect = 5e-21
Identities = 78/192 (40%), Positives = 88/192 (45%), Gaps = 39/192 (20%)
Query: 209 SAGSQR------GRGGGSGNFMGRGGNFG----GGGGNFGRGGNFGGRGGYGGGGGGSRG 258
S GS + GGGSG F GG G GGGG+ G G GG G GGGS G
Sbjct: 84 SGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGS-G 142
Query: 259 SYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNF 318
+ G GG++G +YGG S GG GGG G + GGG G GY G G
Sbjct: 143 CFSSGGGGFSGQAVQCQSYGG----VSSGGSSGGGSGCFSSGGGGGSVCGYSG--GGSGC 196
Query: 319 GGGNYGGGGNYNDFGNYSGQQ--------QSNYGPMKGGSFGGRSSGSP-------YGGG 363
GGG+ GG G+ G S QQ Q +YG GGS GG SG GG
Sbjct: 197 GGGSSGGSGS----GYVSSQQVTQTSCAPQPSYG---GGSSGGGGSGGSGCFSSGGGGGS 249
Query: 364 YGSGGGSGGYGS 375
G GGGS G GS
Sbjct: 250 SGCGGGSSGIGS 261
Score = 79.7 bits (195), Expect = 4e-15
Identities = 64/173 (36%), Positives = 74/173 (42%), Gaps = 48/173 (27%)
Query: 209 SAGSQRGRGGGSGNFM-GRGGNFGGGGGNFGRGG-----------NFGG--RGGYGGGGG 254
S+G GGGSG F G GG+ GGG G F GG ++GG GG GGG
Sbjct: 115 SSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGS 174
Query: 255 GSRGSYGGGDG--GYNGFG---GDGGNYGGGPGYSS-----------RGGYGGGGPGYGN 298
G S GGG GY+G G G G + G G GY S + YGGG G G
Sbjct: 175 GCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGG 234
Query: 299 QGGG----YGGGGGYDGYNEGGN--------------FGGGNYGGGGNYNDFG 333
GG GGGGG G G + GGG+ GGGG + G
Sbjct: 235 SGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVG 287
Score = 77.8 bits (190), Expect = 1e-14
Identities = 60/164 (36%), Positives = 65/164 (39%), Gaps = 46/164 (28%)
Query: 209 SAGSQRGRGGGSGNFMGRGGNF-------------------GGGGGNFGRGGNFGGRGGY 249
S+G GGGSG F GG F GGG G F GG G GY
Sbjct: 130 SSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGY 189
Query: 250 GGGG----GGSRG---------------------SYGGGDGGYNGFGGDGGNYGGGPGYS 284
GGG GGS G SYGGG G G GG G GG G S
Sbjct: 190 SGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGS 249
Query: 285 SRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGN 328
S G GGG G G+ GGG G + GG GG + GG G+
Sbjct: 250 S--GCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGS 291
Score = 73.6 bits (179), Expect = 3e-13
Identities = 47/110 (42%), Positives = 50/110 (45%), Gaps = 27/110 (24%)
Query: 269 GFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGN 328
G GG GG+ GGG G+ GG GGG G G GY GGGGY G G GGG+ GGGG
Sbjct: 22 GGGGGGGSGGGGCGFFGGGGSGGGSSG---SGCGYSGGGGYSG----GGCGGGSSGGGG- 73
Query: 329 YNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 378
GG GG GS Y GGGS G GS F
Sbjct: 74 -------------------GGGIGGCGGGSGGSVKYSGGGGSSGGGSGCF 104
Score = 65.9 bits (159), Expect = 6e-11
Identities = 53/150 (35%), Positives = 58/150 (38%), Gaps = 32/150 (21%)
Query: 200 KALSKQEMQSAGSQRGRGGGSGNFMGRGGN-----FGGGGGNFGRGGNFGGRGG------ 248
+A+ Q S GGGSG F GG + GGG G GG+ GG G
Sbjct: 154 QAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCG-GGSSGGSGSGYVSSQ 212
Query: 249 ------------YGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGY 296
YGGG G GS G G G GG G GG G S GGG
Sbjct: 213 QVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVC 272
Query: 297 GNQGGGYGGGGGYDGYNEGGNFGGGNYGGG 326
G GG GGGGG G + GG G G
Sbjct: 273 G--GGSSGGGGG------GSSVGGSGSGKG 294
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 117 bits (293), Expect = 2e-26
Identities = 66/110 (60%), Positives = 69/110 (62%), Gaps = 7/110 (6%)
Query: 205 QEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGD 264
Q+ Q G RG GG G GRGG GGGGG GRGG GG GG+GGGGGG G GGG
Sbjct: 326 QKRQEGGGGRGGWGGGGGGGGRGG--GGGGG--GRGGWGGGGGGWGGGGGGGGGWGGGGG 381
Query: 265 GGYNGFGGDGGNYGGGPGYSSRGGYGGGGPG--YGNQGGGYGGGGGYDGY 312
GG GF G G +YGG GY RGGYGG G G YG GGG GGGGG GY
Sbjct: 382 GGRGGFQGRG-DYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGY 430
Score = 113 bits (283), Expect = 2e-25
Identities = 66/116 (56%), Positives = 72/116 (62%), Gaps = 14/116 (12%)
Query: 213 QRGRGGGSGNFMGRGG-NFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFG 271
+R GGG GRGG GGGGG G GG GGRGG+GGGGGG +GGG GG G+G
Sbjct: 327 KRQEGGG-----GRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGG----WGGGGGGGGGWG 377
Query: 272 GDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGG 327
G GG GG G+ RG YGG G GYG + GGYGG G D Y GG GGG GGGG
Sbjct: 378 GGGG--GGRGGFQGRGDYGGRG-GYGGR-GGYGGRGYGDPYGGGGGGGGGGGGGGG 429
Score = 111 bits (277), Expect = 1e-24
Identities = 62/125 (49%), Positives = 66/125 (52%), Gaps = 24/125 (19%)
Query: 253 GGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGY 312
GGG RG +GGG GG GG GG GGG RGG+GGGG G+G GGG GG GG G
Sbjct: 331 GGGGRGGWGGGGGG----GGRGGGGGGG----GRGGWGGGGGGWGGGGGGGGGWGGGGGG 382
Query: 313 NEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
GG G G+YGG G Y G Y GGR G PYGGG G GGG GG
Sbjct: 383 GRGGFQGRGDYGGRGGYGGRGGY----------------GGRGYGDPYGGGGGGGGGGGG 426
Query: 373 YGSRR 377
G R
Sbjct: 427 GGGYR 431
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 338 QQQSNYGPMKGGSFGGRSSGSPYGGGYGS-----GGGSGGYG 374
Q++ G +GG GG G GGG G GGG GG+G
Sbjct: 326 QKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWG 367
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 117 bits (292), Expect = 2e-26
Identities = 68/135 (50%), Positives = 76/135 (56%), Gaps = 25/135 (18%)
Query: 245 GRGGYGGGGGGSRGSYGGG-DGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGY 303
G G GGGG G GS+GGG GG +G G GG +GGG G SS GGYGGG G G+ GGGY
Sbjct: 455 GEGSSGGGGRGG-GSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGY 513
Query: 304 GGG---GGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPY 360
GGG GG+ G + GG GG + GGGG Y GGS GG GS
Sbjct: 514 GGGSSSGGHGGSSSGGYGGGSSGGGGGGYG-----------------GGSSGG---GSSS 553
Query: 361 GGGYGSGGGSGGYGS 375
GGGYG G SGG+ S
Sbjct: 554 GGGYGGGSSSGGHKS 568
Score = 110 bits (275), Expect = 2e-24
Identities = 65/144 (45%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 204 KQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGG 263
+ E+Q+ S G SG GG+FGGG G GG G G GG GG S G YGGG
Sbjct: 443 ENEIQTYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGG 502
Query: 264 D--GGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGG 321
GG +G G GG+ GG G SS GGYGGG G G GGGYGGG G + GG +GGG
Sbjct: 503 SSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGG--GGGYGGGSSGGGSSSGGGYGGG 560
Query: 322 NYGGGGNYNDFGNYSGQQQSNYGP 345
+ GG + G+ + S+ GP
Sbjct: 561 SSSGGHKSSSSGSVG--ESSSKGP 582
Score = 99.8 bits (247), Expect = 4e-21
Identities = 64/144 (44%), Positives = 74/144 (51%), Gaps = 31/144 (21%)
Query: 239 RGGNFGGRGGYGGGGG-------GSRGSYGGG--DGGYNGFGGDGGNYGGGPGYSSRGGY 289
R G GG GG GGGGG S+GS GGG GG++G G+ GGG S GGY
Sbjct: 15 RSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGY 74
Query: 290 GG-GGPGYGNQGGGYGG---GGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGP 345
GG GG G G+ G YG GG Y G GG+FGGG++GGG FG
Sbjct: 75 GGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGG----SFG------------ 118
Query: 346 MKGGSFGGRSSGSPYGGGYGSGGG 369
GG FGG G +GGG+G GG
Sbjct: 119 --GGGFGGGGFGGGFGGGFGGDGG 140
Score = 95.5 bits (236), Expect = 7e-20
Identities = 59/131 (45%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 210 AGSQRGRGGGSGNFMGRGG--------NFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
+ S+ G GGG G G GG + G GG F GG GG G GGG G
Sbjct: 12 SSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSS 71
Query: 262 GGDGGYNGFGGDGGNYGGGPGYSSRGG-----YGGGGPGYGNQGGGYGGGGGYDGYNEGG 316
GG GG GFGG G++ G G SS GG +GGG G G+ GGG GGGG+ G GG
Sbjct: 72 GGYGGLGGFGG--GSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGG 129
Query: 317 NFGGGNYGGGG 327
FGGG G GG
Sbjct: 130 GFGGGFGGDGG 140
Score = 85.9 bits (211), Expect = 5e-17
Identities = 59/129 (45%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 193 GHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGG-GGGNFGRGGNFGGRGGYGG 251
G C +S + S+ G G SG F G + G GGG FG G+ GG GG GG
Sbjct: 22 GGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFG--GSSGGYGGLGG 79
Query: 252 GGGGS-RGSYGGGD--GGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGG 308
GGGS RGSYG G Y G G GG++GGG G +GGGG G G GGG+GGG G
Sbjct: 80 FGGGSFRGSYGSSSFGGSYGGSFG-GGSFGGGS--FGGGSFGGGGFGGGGFGGGFGGGFG 136
Query: 309 YDGYNEGGN 317
DG GN
Sbjct: 137 GDGGLLSGN 145
Score = 79.0 bits (193), Expect = 7e-15
Identities = 52/125 (41%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 268 NGFGGDGGNYGGGPGYS---------------SRGGYGGGGPGYGNQGGG-YGGGGGYDG 311
+G GG GG GGG G S S GG+ GG G+ GGG +GG G G
Sbjct: 16 SGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSG--G 73
Query: 312 YNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRS--SGSPYGGGYGSGGG 369
Y G FGGG++ G + FG G G GGSFGG S GS GGG+G GG
Sbjct: 74 YGGLGGFGGGSFRGSYGSSSFGGSYG------GSFGGGSFGGGSFGGGSFGGGGFGGGGF 127
Query: 370 SGGYG 374
GG+G
Sbjct: 128 GGGFG 132
Score = 59.7 bits (143), Expect = 4e-09
Identities = 39/90 (43%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 215 GRGGGSGNFMGRGGNFGGGGGNFGRGGNF-----GGRGGYGGGGGGSRGSYGGGDGGYNG 269
G GGGS GG +GGG + G GG+ GG G GGGGG GS GGG G
Sbjct: 498 GYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSG-GGGGGYGGGSSGGGSSSGGG 556
Query: 270 FGGDGGNYGGGPGYSSRGGYG---GGGPGY 296
+G GG+ GG SS G G GP Y
Sbjct: 557 YG--GGSSSGGHKSSSSGSVGESSSKGPRY 584
Score = 49.3 bits (116), Expect = 6e-06
Identities = 32/91 (35%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 303 YGGGGGYDGYNEGGNFGGGNYGGGGNYNDF---------------GNYSGQQQSNYGPMK 347
Y Y GG GGG GGGG + G +SG S G
Sbjct: 5 YSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSR-GSSG 63
Query: 348 GGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 378
GG FGG S G GG+G G G YGS F
Sbjct: 64 GGCFGGSSGGYGGLGGFGGGSFRGSYGSSSF 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.143 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,971,672
Number of Sequences: 37866
Number of extensions: 1354640
Number of successful extensions: 46562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 8306
Number of HSP's gapped (non-prelim): 13020
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.