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Search of human proteins with 33636771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33636771 myelin-associated oligodendrocyte basic protein
[Homo sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33636771 myelin-associated oligodendrocyte basic protein [Hom... 179 3e-46
gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens] 81 2e-16
gi|109826351 melanophilin isoform 2 [Homo sapiens] 33 0.049
gi|13129108 melanophilin isoform 1 [Homo sapiens] 33 0.049
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 28 1.2
gi|239752592 PREDICTED: hypothetical protein XP_002348308, parti... 28 1.6
gi|149408130 ret finger protein-like 1 [Homo sapiens] 28 1.6
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 28 2.1
gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo sap... 27 2.7
gi|239746033 PREDICTED: hypothetical protein XP_002344174 [Homo ... 27 2.7
gi|4757988 WD repeat domain 39 [Homo sapiens] 27 2.7
gi|149408135 ret finger protein-like 3 isoform 1 [Homo sapiens] 27 4.6
gi|5730013 ret finger protein-like 3 isoform 2 [Homo sapiens] 27 4.6
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 26 6.0
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 26 6.0
gi|4503313 diacylglycerol kinase epsilon [Homo sapiens] 26 7.8
gi|219842266 usherin isoform B [Homo sapiens] 26 7.8
gi|219842259 usherin isoform A [Homo sapiens] 26 7.8
gi|169171772 PREDICTED: similar to hCG40110 [Homo sapiens] 26 7.8
gi|169172289 PREDICTED: similar to hCG40110 [Homo sapiens] 26 7.8
gi|169170082 PREDICTED: hypothetical protein LOC728927 [Homo sap... 26 7.8
gi|169170430 PREDICTED: similar to hCG40110 [Homo sapiens] 26 7.8
gi|224451131 eyes shut homolog isoform 2 [Homo sapiens] 26 7.8
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens] 26 7.8
gi|38093661 eyes shut homolog isoform 3 [Homo sapiens] 26 7.8
>gi|33636771 myelin-associated oligodendrocyte basic protein [Homo
sapiens]
Length = 81
Score = 179 bits (455), Expect = 3e-46
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MSQKPAKEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKEEDW 60
MSQKPAKEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKEEDW
Sbjct: 1 MSQKPAKEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKEEDW 60
Query: 61 ICCACQKTRLKRKIRPTPKKK 81
ICCACQKTRLKRKIRPTPKKK
Sbjct: 61 ICCACQKTRLKRKIRPTPKKK 81
>gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]
Length = 859
Score = 81.3 bits (199), Expect = 2e-16
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 1 MSQKPAKEGPR---LSKNQKYSEHFSIHCCPPFTFL-NSKKEIVDRKYSICKSGCFYQKK 56
+ QK +EG + LSK+Q++ EH + CC PFTFL N+K++ D K+++CKS C YQK
Sbjct: 39 LKQKLDEEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKH 98
Query: 57 EEDWICCACQKTRLKR 72
E+ W+CC CQ+ RL R
Sbjct: 99 EKAWVCCVCQQARLLR 114
>gi|109826351 melanophilin isoform 2 [Homo sapiens]
Length = 572
Score = 33.1 bits (74), Expect = 0.049
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 3 QKPAKEGPRLSKNQKYSEHFSIHCCPPFTFL-NSKKEIVDRKYSICKSGCFYQKKEEDWI 61
+K + + LS +E C P+ L NSK++ ++ CKS +E+ WI
Sbjct: 44 KKESSKRELLSDTAHLNETHCARCLQPYQLLVNSKRQCLECGLFTCKSCGRVHPEEQGWI 103
Query: 62 CCACQKTRL 70
C C R+
Sbjct: 104 CDPCHLARV 112
>gi|13129108 melanophilin isoform 1 [Homo sapiens]
Length = 600
Score = 33.1 bits (74), Expect = 0.049
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 3 QKPAKEGPRLSKNQKYSEHFSIHCCPPFTFL-NSKKEIVDRKYSICKSGCFYQKKEEDWI 61
+K + + LS +E C P+ L NSK++ ++ CKS +E+ WI
Sbjct: 44 KKESSKRELLSDTAHLNETHCARCLQPYQLLVNSKRQCLECGLFTCKSCGRVHPEEQGWI 103
Query: 62 CCACQKTRL 70
C C R+
Sbjct: 104 CDPCHLARV 112
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 3 QKPAKEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSI 46
Q P KE P + K+Q ++ PP T ++ K E ++RK S+
Sbjct: 2367 QGPIKEEPPMKKSQAANKQV-----PPLTKVDVKMETIERKISV 2405
>gi|239752592 PREDICTED: hypothetical protein XP_002348308,
partial [Homo sapiens]
Length = 94
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 47 CKSGCFYQKKEEDWICCACQKTRLKRKIRPTPKKK 81
C++G +K ED+ C C KT K P P +K
Sbjct: 14 CRNGNTRKKTVEDYFCFCCLKTLQKPTEVPVPYEK 48
>gi|149408130 ret finger protein-like 1 [Homo sapiens]
Length = 317
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 58 EDWICCACQKTRLKRKIRPT 77
ED +CC C K KIRP+
Sbjct: 74 EDLLCCCCSMVSQKNKIRPS 93
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEEDWICCACQKTRLKRKIRPTPKK 80
PFT L KYS+CK DW C T R PTP +
Sbjct: 43 PFTCLEKSHLYNHMKYSLCKDSLSLLLDSPDWACRRGSTT--PRPHAPTPDR 92
>gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo
sapiens]
Length = 304
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 47 CKSGCFYQKKEEDWICCACQKTRLKRKIRPTPKKK 81
C++G +K ED+ C C+K K P P +K
Sbjct: 14 CRNGNTRKKTVEDYFCFCCRKALQKPTEVPVPYEK 48
>gi|239746033 PREDICTED: hypothetical protein XP_002344174 [Homo
sapiens]
Length = 145
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 47 CKSGCFYQKKEEDWICCACQKTRLKRKIRPTPKKK 81
C++G +K ED+ C C+K K P P +K
Sbjct: 65 CRNGNTRKKTVEDYFCFCCRKALQKPTEVPVPYEK 99
>gi|4757988 WD repeat domain 39 [Homo sapiens]
Length = 339
Score = 27.3 bits (59), Expect = 2.7
Identities = 7/12 (58%), Positives = 12/12 (100%)
Query: 53 YQKKEEDWICCA 64
Y+++E+DW+CCA
Sbjct: 177 YREEEDDWVCCA 188
>gi|149408135 ret finger protein-like 3 isoform 1 [Homo sapiens]
Length = 317
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 58 EDWICCACQKTRLKRKIRP 76
ED +CC C + KIRP
Sbjct: 74 EDLLCCCCSMVSQRNKIRP 92
>gi|5730013 ret finger protein-like 3 isoform 2 [Homo sapiens]
Length = 288
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 58 EDWICCACQKTRLKRKIRP 76
ED +CC C + KIRP
Sbjct: 45 EDLLCCCCSMVSQRNKIRP 63
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo
sapiens]
Length = 488
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 39 IVDRKYSICKSGC--FYQKKEEDWICCACQKTRLKRKIRP 76
I++ ++ CK+ +++ E D+ C C+KT R +RP
Sbjct: 41 IIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo
sapiens]
Length = 518
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 39 IVDRKYSICKSGC--FYQKKEEDWICCACQKTRLKRKIRP 76
I++ ++ CK+ +++ E D+ C C+KT R +RP
Sbjct: 41 IIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>gi|4503313 diacylglycerol kinase epsilon [Homo sapiens]
Length = 567
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 46 ICKSGCFYQKKEEDWICCACQKT 68
+CK C Q K D+ C CQKT
Sbjct: 140 VCKQQCGCQPKLCDYRCIWCQKT 162
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 36 KKEIVDRKYSICKSGCFYQKKEEDWIC--CACQKT 68
K + R+ + C G FY ++ ++C C C KT
Sbjct: 818 KPNVEGRQCNKCLEGNFYLRQNNSFLCLPCNCDKT 852
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 36 KKEIVDRKYSICKSGCFYQKKEEDWIC--CACQKT 68
K + R+ + C G FY ++ ++C C C KT
Sbjct: 818 KPNVEGRQCNKCLEGNFYLRQNNSFLCLPCNCDKT 852
>gi|169171772 PREDICTED: similar to hCG40110 [Homo sapiens]
Length = 427
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 7 KEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKE 57
K ++K+ S HF+ P +S ++++ RKY C + KK+
Sbjct: 66 KRQEAVAKHPAGSFHFTAEILPDHDIKDSFQKVILRKYGSCDLNNLHLKKD 116
>gi|169172289 PREDICTED: similar to hCG40110 [Homo sapiens]
Length = 427
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 7 KEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKE 57
K ++K+ S HF+ P +S ++++ RKY C + KK+
Sbjct: 66 KRQEAVAKHPAGSFHFTAEILPDHDIKDSFQKVILRKYGSCDLNNLHLKKD 116
>gi|169170082 PREDICTED: hypothetical protein LOC728927 [Homo
sapiens]
Length = 427
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 7 KEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKE 57
K ++K+ S HF+ P +S ++++ RKY C + KK+
Sbjct: 66 KRQEAVAKHPAGSFHFTAEILPDHDIKDSFQKVILRKYGSCDLNNLHLKKD 116
>gi|169170430 PREDICTED: similar to hCG40110 [Homo sapiens]
Length = 427
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 7 KEGPRLSKNQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKE 57
K ++K+ S HF+ P +S ++++ RKY C + KK+
Sbjct: 66 KRQEAVAKHPAGSFHFTAEILPDHDIKDSFQKVILRKYGSCDLNNLHLKKD 116
>gi|224451131 eyes shut homolog isoform 2 [Homo sapiens]
Length = 619
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 15 NQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKEEDW 60
++ +S+ +S HC PPF+ +E+ + CK+ K E+W
Sbjct: 191 SEAWSKTYSCHCQPPFSG-KYCQELDACSFKPCKNNGSCINKRENW 235
>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
Length = 3144
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 15 NQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKEEDW 60
++ +S+ +S HC PPF+ +E+ + CK+ K E+W
Sbjct: 191 SEAWSKTYSCHCQPPFSG-KYCQELDACSFKPCKNNGSCINKRENW 235
>gi|38093661 eyes shut homolog isoform 3 [Homo sapiens]
Length = 594
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 15 NQKYSEHFSIHCCPPFTFLNSKKEIVDRKYSICKSGCFYQKKEEDW 60
++ +S+ +S HC PPF+ +E+ + CK+ K E+W
Sbjct: 191 SEAWSKTYSCHCQPPFSG-KYCQELDACSFKPCKNNGSCINKRENW 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,922,134
Number of Sequences: 37866
Number of extensions: 153672
Number of successful extensions: 343
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 28
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.