Search of human proteins with 33413418

Search of human proteins with 33413418

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33413418 signal peptide peptidase 3 [Homo sapiens]
         (384 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33413418 signal peptide peptidase 3 [Homo sapiens]                 763   0.0  
gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo ...   110   2e-24
gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo ...   110   2e-24
gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo ...   110   2e-24
gi|116734691 signal peptide peptidase-like 2B isoform 3 [Homo sa...   109   5e-24
gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo sap...   109   5e-24
gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]           106   4e-23
gi|38524591 intramembrane protease 5 [Homo sapiens]                    97   2e-20
gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso...    34   0.25 
gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide i...    33   0.33 
gi|21553317 SFT2 domain containing 1 [Homo sapiens]                    33   0.33 
gi|13128976 Yip1 domain family, member 2 [Homo sapiens]                30   2.8  
gi|151301080 recombination activating gene 2 [Homo sapiens]            29   6.2  

>gi|33413418 signal peptide peptidase 3 [Homo sapiens]
          Length = 384

 Score =  763 bits (1971), Expect = 0.0
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNS 60
           MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNS
Sbjct: 1   MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNS 60

Query: 61  TNNSIQTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQY 120
           TNNSIQTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQY
Sbjct: 61  TNNSIQTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQY 120

Query: 121 LTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAF 180
           LTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAF
Sbjct: 121 LTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAF 180

Query: 181 VRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPN 240
           VRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPN
Sbjct: 181 VRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPN 240

Query: 241 VGRDVPRLSLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAP 300
           VGRDVPRLSLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAP
Sbjct: 241 VGRDVPRLSLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAP 300

Query: 301 GPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYL 360
           GPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYL
Sbjct: 301 GPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYL 360

Query: 361 KGDLRRMWSEPFHSKSSSSRFLEV 384
           KGDLRRMWSEPFHSKSSSSRFLEV
Sbjct: 361 KGDLRRMWSEPFHSKSSSSRFLEV 384


>gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
           sapiens]
          Length = 426

 Score =  110 bits (275), Expect = 2e-24
 Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 97/378 (25%)

Query: 19  STFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78
           S  L+++L I +G+ RS+                     G + ++  +TI S  A   PI
Sbjct: 38  SLLLMALLPIFFGALRSVRCA-----------------RGKNASDMPETITSRDAARFPI 80

Query: 79  GASVSLLVMFFFF-----DSVQVVFTICTAVLATIAFAFLLLPMC-------------QY 120
            AS +LL ++ FF     + + ++ ++   VL  +A +  + P               Q 
Sbjct: 81  IASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQL 140

Query: 121 LTRPCSPQNK---ISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAM 177
           L    S +NK   I++     F   +L+   LS ++ + ++L  HW+  +   +   +  
Sbjct: 141 LFTQGSGENKEEIINY----EFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNG 196

Query: 178 IAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHL 237
           +  + L ++   C+LL GL IYDVFWV      F +NVMV VA                 
Sbjct: 197 VELLHLNNVSTGCILLGGLFIYDVFWV------FGTNVMVTVAKS--------------- 235

Query: 238 GPNVGRDVPRLSLPGKLVFPSS------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQ 291
                        P KLVFP          ++F+MLG+GD+V+PG+ +  +LR+D     
Sbjct: 236 ----------FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFD----- 280

Query: 292 ASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTL 351
                        IS +    +YF+ +   Y  GL        I + AQPALLYLVP  +
Sbjct: 281 -------------ISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACI 327

Query: 352 LPLLTMAYLKGDLRRMWS 369
              + +A  KG++  M+S
Sbjct: 328 GFPVLVALAKGEVTEMFS 345


>gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo
           sapiens]
          Length = 394

 Score =  110 bits (275), Expect = 2e-24
 Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 97/378 (25%)

Query: 19  STFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78
           S  L+++L I +G+ RS+                     G + ++  +TI S  A   PI
Sbjct: 38  SLLLMALLPIFFGALRSVRCA-----------------RGKNASDMPETITSRDAARFPI 80

Query: 79  GASVSLLVMFFFF-----DSVQVVFTICTAVLATIAFAFLLLPMC-------------QY 120
            AS +LL ++ FF     + + ++ ++   VL  +A +  + P               Q 
Sbjct: 81  IASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQL 140

Query: 121 LTRPCSPQNK---ISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAM 177
           L    S +NK   I++     F   +L+   LS ++ + ++L  HW+  +   +   +  
Sbjct: 141 LFTQGSGENKEEIINY----EFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNG 196

Query: 178 IAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHL 237
           +  + L ++   C+LL GL IYDVFWV      F +NVMV VA                 
Sbjct: 197 VELLHLNNVSTGCILLGGLFIYDVFWV------FGTNVMVTVAKS--------------- 235

Query: 238 GPNVGRDVPRLSLPGKLVFPSS------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQ 291
                        P KLVFP          ++F+MLG+GD+V+PG+ +  +LR+D     
Sbjct: 236 ----------FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFD----- 280

Query: 292 ASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTL 351
                        IS +    +YF+ +   Y  GL        I + AQPALLYLVP  +
Sbjct: 281 -------------ISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACI 327

Query: 352 LPLLTMAYLKGDLRRMWS 369
              + +A  KG++  M+S
Sbjct: 328 GFPVLVALAKGEVTEMFS 345


>gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
           sapiens]
          Length = 377

 Score =  110 bits (275), Expect = 2e-24
 Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 97/378 (25%)

Query: 19  STFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78
           S  L+++L I +G+ RS+                     G + ++  +TI S  A   PI
Sbjct: 38  SLLLMALLPIFFGALRSVRCA-----------------RGKNASDMPETITSRDAARFPI 80

Query: 79  GASVSLLVMFFFF-----DSVQVVFTICTAVLATIAFAFLLLPMC-------------QY 120
            AS +LL ++ FF     + + ++ ++   VL  +A +  + P               Q 
Sbjct: 81  IASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQL 140

Query: 121 LTRPCSPQNK---ISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAM 177
           L    S +NK   I++     F   +L+   LS ++ + ++L  HW+  +   +   +  
Sbjct: 141 LFTQGSGENKEEIINY----EFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNG 196

Query: 178 IAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHL 237
           +  + L ++   C+LL GL IYDVFWV      F +NVMV VA                 
Sbjct: 197 VELLHLNNVSTGCILLGGLFIYDVFWV------FGTNVMVTVAKS--------------- 235

Query: 238 GPNVGRDVPRLSLPGKLVFPSS------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQ 291
                        P KLVFP          ++F+MLG+GD+V+PG+ +  +LR+D     
Sbjct: 236 ----------FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFD----- 280

Query: 292 ASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTL 351
                        IS +    +YF+ +   Y  GL        I + AQPALLYLVP  +
Sbjct: 281 -------------ISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACI 327

Query: 352 LPLLTMAYLKGDLRRMWS 369
              + +A  KG++  M+S
Sbjct: 328 GFPVLVALAKGEVTEMFS 345


>gi|116734691 signal peptide peptidase-like 2B isoform 3 [Homo
           sapiens]
          Length = 511

 Score =  109 bits (272), Expect = 5e-24
 Identities = 97/306 (31%), Positives = 145/306 (47%), Gaps = 59/306 (19%)

Query: 83  SLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCG----- 137
           S+LV+ ++F  + V   I    LA+    +  L  C           ++ FG C      
Sbjct: 235 SMLVLLYYFYDLLVYVVIGIFCLASATGLYSCLAPCV---------RRLPFGKCRIPNNS 285

Query: 138 ------RFTAAELLSFSLSVMLVLIWVLTGH-----WLLMDALAMGLCVAMIAFVRLPSL 186
                 R  A  LL     V + ++W +  +     W+L DAL +  C+ M+  +RLP+ 
Sbjct: 286 LPYFHKRPQARMLLLALFCVAVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTF 345

Query: 187 KVSCLLLSGLLIYDVFWVFFSAYI--FNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRD 244
           K   LLL  L +YD+F+VF + ++    S++MV+VAT P+D+       KL   P V + 
Sbjct: 346 KACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDS---ATREKL---PMVLK- 398

Query: 245 VPRL-SLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPA 303
           VPRL S P  L         FS+LG GDI++PGLL+ +  R+D                 
Sbjct: 399 VPRLNSSPLAL-----CDRPFSLLGFGDILVPGLLVAYCHRFD----------------- 436

Query: 304 NISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGD 363
            I  +  +V +  CT I Y VGLL   VA  + +  QPALLYLVP TL+    +A  + +
Sbjct: 437 -IQVQSSRVYFVACT-IAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRRE 494

Query: 364 LRRMWS 369
           L   W+
Sbjct: 495 LGVFWT 500


>gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo
           sapiens]
          Length = 592

 Score =  109 bits (272), Expect = 5e-24
 Identities = 97/306 (31%), Positives = 145/306 (47%), Gaps = 59/306 (19%)

Query: 83  SLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCG----- 137
           S+LV+ ++F  + V   I    LA+    +  L  C           ++ FG C      
Sbjct: 235 SMLVLLYYFYDLLVYVVIGIFCLASATGLYSCLAPCV---------RRLPFGKCRIPNNS 285

Query: 138 ------RFTAAELLSFSLSVMLVLIWVLTGH-----WLLMDALAMGLCVAMIAFVRLPSL 186
                 R  A  LL     V + ++W +  +     W+L DAL +  C+ M+  +RLP+ 
Sbjct: 286 LPYFHKRPQARMLLLALFCVAVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTF 345

Query: 187 KVSCLLLSGLLIYDVFWVFFSAYI--FNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRD 244
           K   LLL  L +YD+F+VF + ++    S++MV+VAT P+D+       KL   P V + 
Sbjct: 346 KACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDS---ATREKL---PMVLK- 398

Query: 245 VPRL-SLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPA 303
           VPRL S P  L         FS+LG GDI++PGLL+ +  R+D                 
Sbjct: 399 VPRLNSSPLAL-----CDRPFSLLGFGDILVPGLLVAYCHRFD----------------- 436

Query: 304 NISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGD 363
            I  +  +V +  CT I Y VGLL   VA  + +  QPALLYLVP TL+    +A  + +
Sbjct: 437 -IQVQSSRVYFVACT-IAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRRE 494

Query: 364 LRRMWS 369
           L   W+
Sbjct: 495 LGVFWT 500


>gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]
          Length = 520

 Score =  106 bits (264), Expect = 4e-23
 Identities = 89/374 (23%), Positives = 169/374 (45%), Gaps = 55/374 (14%)

Query: 6   YSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSI 65
           YS ++   D + V  F+I++  +  G + S  ++ EN       +               
Sbjct: 161 YSPSWPNFDYTMVVIFVIAVFTVALGGYWSGLVELENLKAVTTEDREM-----RKKKEEY 215

Query: 66  QTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPC 125
            T      +   +   V +++++FF+  +  V      + + ++    L  +   +    
Sbjct: 216 LTFSPLTVVIFVVICCVMMVLLYFFYKWLVYVMIAIFCIASAMSLYNCLAALIHKI---- 271

Query: 126 SPQNKISFGCCGRFTAAELLSFS-LSVMLVLIWVLTGH-----WLLMDALAMGLCVAMIA 179
            P  + +  C G+     L+  S L + + ++W +  +     W+L D L +  C+ +I 
Sbjct: 272 -PYGQCTIACRGKNMEVRLIFLSGLCIAVAVVWAVFRNEDRWAWILQDILGIAFCLNLIK 330

Query: 180 FVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNS--NVMVKVATQPADNPLDVLSRKLHL 237
            ++LP+ K   +LL  LL+YDVF+VF + +I  +  ++MV++A  P  N     + KL  
Sbjct: 331 TLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGESIMVELAAGPFGN-----NEKL-- 383

Query: 238 GPNVGRDVPRL---SLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASG 294
            P V R VP+L   S+    + P       S+LG GDI++PGLL+ +  R+D      +G
Sbjct: 384 -PVVIR-VPKLIYFSVMSVCLMP------VSILGFGDIIVPGLLIAYCRRFD----VQTG 431

Query: 295 DSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPL 354
            S                 Y+  + + Y +G++   V   + +  QPALLYLVP TL+  
Sbjct: 432 SS---------------YIYYVSSTVAYAIGMILTFVVLVLMKKGQPALLYLVPCTLITA 476

Query: 355 LTMAYLKGDLRRMW 368
             +A+ + ++++ W
Sbjct: 477 SVVAWRRKEMKKFW 490


>gi|38524591 intramembrane protease 5 [Homo sapiens]
          Length = 684

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 39/293 (13%)

Query: 84  LLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCGRFTAAE 143
           +L+++FF+D    V      + A I     L P+  +L+       +             
Sbjct: 267 MLLLYFFYDHFVYVTIGIFGLGAGIGLYSCLSPLVCHLS--LRQYQRPPHSLWASLPLPL 324

Query: 144 LLSFSLSVMLVLIWVLTGH-----WLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLLI 198
           LL  SL   +++ WV   +     WLL D L +  C+ ++  VRLP+LK     L  LL 
Sbjct: 325 LLLASLCATVIIFWVAYRNEDRWAWLLQDTLGISYCLFVLHRVRLPTLKNCSSFLLALLA 384

Query: 199 YDVFWVFFSAYIFNS--NVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKLVF 256
           +DVF+VF + +   +  ++M +VA  PA++         H    +   VPRL +    + 
Sbjct: 385 FDVFFVFVTPFFTKTGESIMAQVALGPAES-------SSHERLPMVLKVPRLRVSALTL- 436

Query: 257 PSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGRMQKVSYFH 316
                  FS+LG GDIV+PG L+ +  R+D                  +    +++ +  
Sbjct: 437 ---CSQPFSILGFGDIVVPGFLVAYCCRFD------------------VQVCSRQIYFVA 475

Query: 317 CTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWS 369
           CT + Y VGLL   +A  + +  QPALLYLV  TLL  L +A  + +L   W+
Sbjct: 476 CT-VAYAVGLLVTFMAMVLMQMGQPALLYLVSSTLLTSLAVAACRQELSLFWT 527


>gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
           isoform B [Homo sapiens]
          Length = 353

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 41  ENQDKEKDSNSSSGSFNGNSTNNSIQTI-----DSTQALFLPIGASVSLLVMFFFFDSVQ 95
           E +++EK+     G   GN+    +Q +     D  + +FL     + LL+ FFF+ S+ 
Sbjct: 62  EEEEEEKEEEEGQGQPTGNAWWQKLQIMSEYLWDPERRMFLA-RTGLILLIYFFFYASLA 120

Query: 96  VVFTICTAVL 105
            V T+C   L
Sbjct: 121 AVITLCMYTL 130


>gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
           isoform A [Homo sapiens]
          Length = 357

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 41  ENQDKEKDSNSSSGSFNGNSTNNSIQTI-----DSTQALFLPIGA---SVSLLVMFFFFD 92
           E +++EK+     G   GN+    +Q +     D  + +FL       S+ LL+ FFF+ 
Sbjct: 62  EEEEEEKEEEEGQGQPTGNAWWQKLQIMSEYLWDPERRMFLARTGQSWSLILLIYFFFYA 121

Query: 93  SVQVVFTICTAVL 105
           S+  V T+C   L
Sbjct: 122 SLAAVITLCMYTL 134


>gi|21553317 SFT2 domain containing 1 [Homo sapiens]
          Length = 159

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 22/100 (22%), Positives = 42/100 (42%)

Query: 261 GSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGRMQKVSYFHCTLI 320
           G  FS+LG G + +PG +  F + Y      A   +C   GP     +M + +    T++
Sbjct: 44  GVFFSILGTGLLWLPGGIKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATIV 103

Query: 321 GYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYL 360
                + T   A   H+     L  ++ F  +   +++Y+
Sbjct: 104 MLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYI 143


>gi|13128976 Yip1 domain family, member 2 [Homo sapiens]
          Length = 316

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 146 SFSLSVMLVLIWVLTGHWL--LMDALAMGLCVAMIAFVRLPSLK-----VSCLLLS-GLL 197
           S  + + +V++W++   WL  L  ALA+GL  A + F   P ++     V+ +LLS  +L
Sbjct: 209 SLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFTLWPVVREDTRLVATVLLSVVVL 268

Query: 198 IYDVFWVFFSAYIFNSNVMVKVATQP 223
           ++ +  +    Y F S     VA  P
Sbjct: 269 LHALLAMGCKLYFFQSLPPENVAPPP 294


>gi|151301080 recombination activating gene 2 [Homo sapiens]
          Length = 527

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 124 PCSPQNKISFGCCGRFTAAEL---LSFSLSVMLV-LIWVLTGHWLLMDALAMGLCVAMIA 179
           PC       FGC   +   EL   LSF +S+     I++L GH     +LA  +  A + 
Sbjct: 180 PCVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGH-----SLANNIRPANLY 234

Query: 180 FVR----LPSLKVSCLLLSGLLIY----------DVFWVFFSAYIFNSNVMVKVATQPAD 225
            +R    L S  V+C +L G +            D F +     + N   M+       D
Sbjct: 235 RIRVDLPLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLED 294

Query: 226 NPL------------DVLSRKLHLGPNVGRDVPRLSLPGKLVFPSSTGSHFSML 267
           N +            D+   K+  G N+G     L +PG      S G +F ML
Sbjct: 295 NKIEIREMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYML 348


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,413,835
Number of Sequences: 37866
Number of extensions: 550376
Number of successful extensions: 2062
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2030
Number of HSP's gapped (non-prelim): 13
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.