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Search of human proteins with 122939204
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 603 e-173
gi|122939206 parkin co-regulated gene protein isoform 2 [Homo sa... 506 e-144
gi|122939202 parkin co-regulated gene protein isoform 2 [Homo sa... 506 e-144
gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens] 64 2e-10
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 51 1e-06
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 50 2e-06
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 50 2e-06
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 49 7e-06
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 48 1e-05
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 45 6e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens] 45 6e-05
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 45 8e-05
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 44 1e-04
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 44 2e-04
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 43 3e-04
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 43 3e-04
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 43 4e-04
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 43 4e-04
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 41 0.001
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 41 0.001
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 41 0.001
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 41 0.001
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 41 0.001
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 41 0.001
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 40 0.002
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 40 0.002
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 39 0.004
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 39 0.004
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 39 0.005
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 603 bits (1554), Expect = e-173
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
Sbjct: 1 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
Query: 61 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
Sbjct: 61 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
Query: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
Sbjct: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
Query: 181 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA
Sbjct: 181 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
Query: 241 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN
Sbjct: 241 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
>gi|122939206 parkin co-regulated gene protein isoform 2 [Homo
sapiens]
Length = 257
Score = 506 bits (1303), Expect = e-144
Identities = 257/296 (86%), Positives = 257/296 (86%), Gaps = 39/296 (13%)
Query: 1 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
Sbjct: 1 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
Query: 61 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
Sbjct: 61 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
Query: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
Sbjct: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
Query: 181 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
MVGKALVPYYRQILPVLNIFKNMN
Sbjct: 181 MVGKALVPYYRQILPVLNIFKNMN------------------------------------ 204
Query: 241 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN
Sbjct: 205 ---VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 257
>gi|122939202 parkin co-regulated gene protein isoform 2 [Homo
sapiens]
Length = 257
Score = 506 bits (1303), Expect = e-144
Identities = 257/296 (86%), Positives = 257/296 (86%), Gaps = 39/296 (13%)
Query: 1 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
Sbjct: 1 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
Query: 61 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
Sbjct: 61 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
Query: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
Sbjct: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
Query: 181 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
MVGKALVPYYRQILPVLNIFKNMN
Sbjct: 181 MVGKALVPYYRQILPVLNIFKNMN------------------------------------ 204
Query: 241 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN
Sbjct: 205 ---VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 257
>gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
Length = 221
Score = 63.9 bits (154), Expect = 2e-10
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 56 PPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDG 115
P F E+ P+AF Y +G P L H S +++ W+ E L + L +G
Sbjct: 64 PKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEG 123
Query: 116 LCEMTFPYEFFARQGIHDMLEHGG--NKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQ 173
L E PY F +++G ++L G K +P+LP+LI +K AL + +V L L
Sbjct: 124 LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALV 183
Query: 174 HLVVSAEMVGKALVPYYRQILP--VLNIFKNMNGSY 207
L V +VG +L + + +L L+I K+ +Y
Sbjct: 184 QLSV---VVGPSLNDHLKHLLTSGSLSIIKSKIPTY 216
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/72 (45%), Positives = 38/72 (52%)
Query: 201 KNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENI 260
K+ G PRLE SG I ARCNL LGSSD P SASQVA + ID + +
Sbjct: 3 KDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDF 62
Query: 261 GDLIQETLEAFE 272
L E LEA +
Sbjct: 63 QYLFHEDLEAVD 74
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/72 (45%), Positives = 38/72 (52%)
Query: 201 KNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENI 260
K+ G PRLE SG I ARCNL LGSSD P SASQVA + ID + +
Sbjct: 3 KDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDF 62
Query: 261 GDLIQETLEAFE 272
L E LEA +
Sbjct: 63 QYLFHEDLEAVD 74
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/72 (45%), Positives = 38/72 (52%)
Query: 201 KNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENI 260
K+ G PRLE SG I ARCNL LGSSD P SASQVA + ID + +
Sbjct: 3 KDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDF 62
Query: 261 GDLIQETLEAFE 272
L E LEA +
Sbjct: 63 QYLFHEDLEAVD 74
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 50.1 bits (118), Expect = 2e-06
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 206 SYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGD--- 262
S S+ RLECSGAI A C+L GSSD P SASQ+A + D I Q+K E D
Sbjct: 3 SCSVTRLECSGAISAHCSLHLPGSSDSPASASQIA----GTTDAIWNEQEKAELFTDKFC 58
Query: 263 -----LIQETLEAFERYGGENAFINIKY 285
++Q + Y GE N+ +
Sbjct: 59 QVCGVMLQFESQRISHYEGEKHAQNVSF 86
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 48.5 bits (114), Expect = 7e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
PRLECSG ++A C+L L SS+PPTSASQVA
Sbjct: 442 PRLECSGTVIAHCSLKLLDSSNPPTSASQVA 472
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 47.8 bits (112), Expect = 1e-05
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSAS 237
PRLEC G IMA C+L LGSSDPPTSAS
Sbjct: 404 PRLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 45.4 bits (106), Expect = 6e-05
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 191 RQILPVLNIFKNMNGSYSL-PRLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
+ + P++ K + S +L P+LECSG I+A NL LGSSD P SAS+VA I
Sbjct: 442 KPLQPLIKEQKPKDQSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGI 494
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 45.4 bits (106), Expect = 6e-05
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 209 LPRLECSGAIMARCNLDHLGSSDPPTSASQVA---EIIVNSGDGIDYSQQKRENIGDLIQ 265
L +LECSG + A C+L+ GS+DPPTSAS+VA I + ++ Q+ E + L
Sbjct: 39 LSKLECSGTVSAYCSLNLPGSTDPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALFS 98
Query: 266 ETL 268
+T+
Sbjct: 99 QTM 101
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 45.1 bits (105), Expect = 8e-05
Identities = 26/41 (63%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 205 GSYSLP---RLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
GS LP +ECSG I ARCNL GSSD P SASQVA I
Sbjct: 154 GSAGLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 201 KNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQV 239
+N G PRLECS I A C+L+ L SS+PPTS SQV
Sbjct: 581 ENGEGLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQV 619
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/35 (62%), Positives = 24/35 (68%)
Query: 206 SYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
S S+ RLECSG I+A CNL GS D P SASQ A
Sbjct: 426 SRSVTRLECSGMILAHCNLRLPGSRDSPASASQAA 460
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 43.1 bits (100), Expect = 3e-04
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 192 QILPVLNIFKNMNGS--YSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNS-GD 248
++ P+ I+K LPRLECSG C+LD SSDPP ASQ +II + D
Sbjct: 159 EVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSD 218
Query: 249 GI 250
GI
Sbjct: 219 GI 220
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 43.1 bits (100), Expect = 3e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 211 RLECSGAIMARCNLDHLGSSDPPTSASQVA 240
+LECSG I+A CNL LGS P TSASQVA
Sbjct: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVA 50
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 207 YSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
Y RLEC+G I A CNL GSSD P S+S+VA I
Sbjct: 45 YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 207 YSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
Y RLEC+G I A CNL GSSD P S+S+VA I
Sbjct: 45 YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
PRLECSG I CNL GSS+ P SAS+VA I
Sbjct: 798 PRLECSGTISPHCNLLLPGSSNSPASASRVAGI 830
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDL 263
PRLE +G I A CNL GSS+ P SASQ I+ + DG + R+ L
Sbjct: 63 PRLERNGMISAHCNLCLTGSSNSPASASQAFTIMDQNRDGFIDKEDLRDTFAAL 116
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 205 GSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVN 245
G +S+ RLE SG I+A CN LGS+D SASQV V+
Sbjct: 27 GYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTTVS 67
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 205 GSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVN 245
G +S+ RLE SG I+A CN LGS+D SASQV V+
Sbjct: 27 GYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTTVS 67
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSAS 237
P+LECSG ++A CNL LGSS P SAS
Sbjct: 140 PKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
PRLE SG I+ CNL LGSSDP T A QVA
Sbjct: 146 PRLEYSGTILVDCNLCLLGSSDPSTLAFQVA 176
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 40.4 bits (93), Expect = 0.002
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 209 LPRLECSGAIMARCNLDHLGSSDPPTSAS 237
LPRLECSG I+A CNL LGSSD AS
Sbjct: 107 LPRLECSGVILAHCNLCLLGSSDSLALAS 135
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
PRLECSG I A CN GSS+ P AS+VA I
Sbjct: 142 PRLECSGKISAHCNPHLQGSSNSPAQASRVAGI 174
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 39.3 bits (90), Expect = 0.004
Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 199 IFKNMNGSYSL-PRLECSGAIMARCNLDHLGSSDPPTSASQV 239
I KN+ S +L P L CS AI A CN GSSD P SASQV
Sbjct: 1092 ISKNIKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQV 1133
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 39.3 bits (90), Expect = 0.004
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 209 LPRLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
LPR ECSGA+ A CNL GSSD S +VA I
Sbjct: 112 LPRPECSGAVSAHCNLHLPGSSDSHASVPRVAGI 145
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 38.9 bits (89), Expect = 0.005
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQV 239
PRLEC+GAI A C L SSD PTS S+V
Sbjct: 77 PRLECTGAISAHCKLCLSDSSDSPTSPSRV 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,760,485
Number of Sequences: 37866
Number of extensions: 530768
Number of successful extensions: 1160
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 64
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.