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Search of human proteins with 31657099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31657099 CKLF-like MARVEL transmembrane domain containing 7
isoform b [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31657099 CKLF-like MARVEL transmembrane domain containing 7 i... 287 2e-78
gi|19923929 CKLF-like MARVEL transmembrane domain containing 7 i... 270 3e-73
gi|32307156 chemokine-like factor isoform d [Homo sapiens] 41 4e-04
gi|7705755 plasmolipin [Homo sapiens] 40 7e-04
gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo ... 39 0.001
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 38 0.003
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 38 0.003
gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ... 36 0.009
gi|169176417 PREDICTED: hypothetical protein [Homo sapiens] 31 0.30
gi|93141024 chemokine-like factor isoform e [Homo sapiens] 31 0.30
gi|8393581 chemokine-like factor isoform a [Homo sapiens] 31 0.30
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 30 0.67
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 30 0.67
gi|169168037 PREDICTED: hypothetical protein [Homo sapiens] 30 0.88
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13... 29 1.1
gi|239754714 PREDICTED: hypothetical protein [Homo sapiens] 29 1.5
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ... 29 1.5
gi|94536811 NEDD4-like ubiquitin-protein ligase 1 [Homo sapiens] 28 2.0
gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens] 28 2.0
gi|24430146 nucleoporin 153kDa [Homo sapiens] 28 2.6
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 28 2.6
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 28 2.6
gi|169172718 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 3.3
gi|18496983 CAP-GLY domain containing linker protein 3 [Homo sap... 28 3.3
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 27 4.4
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 27 4.4
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 27 4.4
gi|30089970 voltage-gated sodium channel type V alpha isoform b ... 27 4.4
>gi|31657099 CKLF-like MARVEL transmembrane domain containing 7
isoform b [Homo sapiens]
Length = 142
Score = 287 bits (734), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
Query: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSIFGFMATFL 120
ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSIFGFMATFL
Sbjct: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSIFGFMATFL 120
Query: 121 CMASIWLSYKISCVTQSTDAAV 142
CMASIWLSYKISCVTQSTDAAV
Sbjct: 121 CMASIWLSYKISCVTQSTDAAV 142
>gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
isoform a [Homo sapiens]
Length = 175
Score = 270 bits (690), Expect = 3e-73
Identities = 142/175 (81%), Positives = 142/175 (81%), Gaps = 33/175 (18%)
Query: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
Query: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS--------- 111
ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS
Sbjct: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 120
Query: 112 ------------------------IFGFMATFLCMASIWLSYKISCVTQSTDAAV 142
IFGFMATFLCMASIWLSYKISCVTQSTDAAV
Sbjct: 121 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 175
>gi|32307156 chemokine-like factor isoform d [Homo sapiens]
Length = 120
Score = 40.8 bits (94), Expect = 4e-04
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
Query: 104 TCISWPLSIFGFMATFLCMASIWLSYK 130
+ WPL +F + C+A L Y+
Sbjct: 72 KWLFWPLLVFALVTAVCCLADGALIYR 98
>gi|7705755 plasmolipin [Homo sapiens]
Length = 182
Score = 40.0 bits (92), Expect = 7e-04
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 22 AGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVT 81
A A+ S S L DL + R+ L + Q+V L+ + + + + Y AY + V
Sbjct: 16 AQGAEASVSALRP--DLGFVRSRLGALMLLQLVLGLLVWALIADTPYHLYPAYGWVMFVA 73
Query: 82 ICDLIMILAFYLVHLFRFYRVLTCISWP--LSIFGFMATFL 120
+ ++ + + ++LF+ + L + WP L IF AT L
Sbjct: 74 VFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVL 114
>gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo
sapiens]
Length = 125
Score = 39.3 bits (90), Expect = 0.001
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 36 LDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVH 95
+D ++ +H +L ++ LI FIC +S+ S + + + + LAF ++
Sbjct: 25 VDKAFLTSHKGILLETELALTLIIFICFTASI-------SAYMAAALLEFFITLAFLFLY 77
Query: 96 LFRFYRVLTCISWPLSIFGFM 116
++Y+ I+WP +FG +
Sbjct: 78 ATQYYQRFDRINWPCLVFGII 98
>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
sapiens]
Length = 208
Score = 37.7 bits (86), Expect = 0.003
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 13 SSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVAQMVTLLIAFICVRS 65
SS S + + QP+ P L GL D Y R LKVAQ++ LIAFIC+ +
Sbjct: 15 SSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFICIET 74
Query: 66 SLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPLSIF---GFMATFLC 121
+ + YF C ++ L+ + + I+W L+ G A
Sbjct: 75 IMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFF 134
Query: 122 MASIWLS 128
+ASI L+
Sbjct: 135 IASIVLA 141
>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
sapiens]
Length = 234
Score = 37.7 bits (86), Expect = 0.003
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 13 SSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVAQMVTLLIAFICVRS 65
SS S + + QP+ P L GL D Y R LKVAQ++ LIAFIC+ +
Sbjct: 15 SSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFICIET 74
Query: 66 SLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPLSIF---GFMATFLC 121
+ + YF C ++ L+ + + I+W L+ G A
Sbjct: 75 IMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFF 134
Query: 122 MASIWLS 128
+ASI L+
Sbjct: 135 IASIVLA 141
>gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo
sapiens]
Length = 156
Score = 36.2 bits (82), Expect = 0.009
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 36 LDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVH 95
+D ++ +H +L ++ LI FIC +S+ S + + + + LAF ++
Sbjct: 25 VDKAFLTSHKGILLETELALTLIIFICFTASI-------SAYMAAALLEFFITLAFLFLY 77
Query: 96 LFRFYRVLTCISWPLSIFGFMATFLCMAS--IWLSYKISCVTQSTDAAV 142
++Y+ I+WP F C+++ I+L + VT AA+
Sbjct: 78 ATQYYQRFDRINWPCLDF-----LRCVSAIIIFLVVSFAAVTSRDGAAI 121
>gi|169176417 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 31.2 bits (69), Expect = 0.30
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 55 TLLIAFICVRSSLWTNYSAYSY-------FEVVTICDLIMILAFYLVHLFRFYRVLTCIS 107
T + ICV + ++T+ Y+Y + IC I + + +H + + R+ T I
Sbjct: 55 TYIYTHICVYTYIYTHICVYTYIYTHICVYIYTHICIYIYMYIYVYIHTYVYIRIYTHI- 113
Query: 108 WPLSIFGFMATFLCMASIWLSYKISCVTQST 138
I+ ++ T +C+ + ++ CV T
Sbjct: 114 ---CIYTYIHTHICIYAYIHTHMYICVYTHT 141
>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
Length = 113
Score = 31.2 bits (69), Expect = 0.30
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
Query: 104 TCISWPL 110
+ WPL
Sbjct: 72 KWLFWPL 78
>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
Length = 152
Score = 31.2 bits (69), Expect = 0.30
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
Query: 104 TCISWPL 110
+ WPL
Sbjct: 72 KWLFWPL 78
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 30.0 bits (66), Expect = 0.67
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 TCSSGSA-LGPGAGAAQPSASPLEGLLDLSYPRT 43
TCSS SA +G G G AQP + PL L L RT
Sbjct: 64 TCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRT 97
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 30.0 bits (66), Expect = 0.67
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 TCSSGSA-LGPGAGAAQPSASPLEGLLDLSYPRT 43
TCSS SA +G G G AQP + PL L L RT
Sbjct: 64 TCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRT 97
>gi|169168037 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 29.6 bits (65), Expect = 0.88
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 61 ICVRSSLWTNYSAYSYFEV---VTICDLIMILAFYLVHLFRFYRVLTCISWPLSIFGFMA 117
+C+ ++T + Y + V IC I + + +H++ + V TCI + I +M
Sbjct: 15 MCIYMCIYTYICIHVYICMYIHVYICMYIHVYIYMYIHVYIYMYVYTCIHIYVCI--YMY 72
Query: 118 TFLCM 122
T++CM
Sbjct: 73 TYICM 77
>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
[Homo sapiens]
Length = 5058
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 68 WTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSIFGFMATFLCMASIWL 127
+TN+ F +V++C + ++ + + F F + L + LS+FG+ A++
Sbjct: 4501 FTNFLYDMLFYLVSVCLCVAVIVAFQLTAFTFRKNLAATALLLSLFGY-------ATLPW 4553
Query: 128 SYKISCVTQSTDAA 141
Y +S + S+D A
Sbjct: 4554 MYLMSRIFSSSDVA 4567
>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 6 GLVRT-TCSSGSALGPGAGAAQPSASPLEGLLDLSYP 41
G RT TCSS A GAG+A P ASP G L + P
Sbjct: 150 GFTRTSTCSSMGAQALGAGSA-PGASPFRGSLTKAGP 185
>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 6 GLVRT-TCSSGSALGPGAGAAQPSASPLEGLLDLSYP 41
G RT TCSS A GAG+A P ASP G L + P
Sbjct: 150 GFTRTSTCSSMGAQALGAGSA-PGASPFRGSLTKAGP 185
>gi|94536811 NEDD4-like ubiquitin-protein ligase 1 [Homo sapiens]
Length = 1606
Score = 28.5 bits (62), Expect = 2.0
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 11 TCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKV-AQMVTLLIAFICVR----- 64
+C A G G G + A + LDL R +L V +Q +TLL+ V+
Sbjct: 905 SCEQAPAGGGGGGGSDSEAESSQSSLDL---RREGSLSPVNSQKITLLLQSPAVKFITNP 961
Query: 65 ---SSLWTNYSAYSYFEVVTICDLIMIL 89
+ L NYSAY F T C MIL
Sbjct: 962 EFFTVLHANYSAYRVFTSST-CLKHMIL 988
>gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens]
Length = 827
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 75 SYFEVVTICDLIMILAFYLVHLFR----------FYRVLTCISWPLSIFGF 115
SY + IC+L++ LAFY++ R F V T + W +++ F
Sbjct: 711 SYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFF 761
>gi|24430146 nucleoporin 153kDa [Homo sapiens]
Length = 1475
Score = 28.1 bits (61), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 4 GAGLVRTTCSSGSALGPGAGAAQPSASPLEG 34
G G T+ S+GS+ G G + PSASP G
Sbjct: 1290 GFGATTTSSSAGSSFVFGTGPSAPSASPAFG 1320
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 4 GAGLV-----RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTL 56
GAG V R + G G G G+ Q A PL L PR ALL ++ +TL
Sbjct: 72 GAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTL 129
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 4 GAGLV-----RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTL 56
GAG V R + G G G G+ Q A PL L PR ALL ++ +TL
Sbjct: 72 GAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTL 129
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 4 GAGLV-----RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTL 56
GAG V R + G G G G+ Q A PL L PR ALL ++ +TL
Sbjct: 72 GAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTL 129
>gi|169172718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 306
Score = 27.7 bits (60), Expect = 3.3
Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 60 FICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLT----CISWPLSIFGF 115
++C+R +T+ Y+Y + + + + + ++ R+ T C+ + I+ +
Sbjct: 72 YVCIRIYTYTHICMYTYIHIYA---YMYVYVYTHIRIYVCIRIYTYTHICVYTYIHIYAY 128
Query: 116 MATFLCM 122
M ++C+
Sbjct: 129 MCVYMCI 135
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 27.7 bits (60), Expect = 3.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1 MSHGAGLVRTTCS---SGSALGPGAGAAQP--SASPLEGLLDLS 39
+SH G++R CS S S LGP +A P S SP L S
Sbjct: 560 ISHSGGMLRAVCSTPLSSSLLGPPGTSALPRLSRSPFTSTLPSS 603
>gi|18496983 CAP-GLY domain containing linker protein 3 [Homo
sapiens]
Length = 547
Score = 27.7 bits (60), Expect = 3.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 45 AALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMIL 89
AA ++++Q + L A + +RS WTN +A Y + DL+ +L
Sbjct: 137 AAAVRLSQQLLALGADVTLRSR-WTNMNALHYAAYFDVPDLVRVL 180
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 WTNYSAYSYFEVVTICDLIMILA-FYLVHLFRFYR 101
WT Y Y++ + T L+ ILA + +H F F R
Sbjct: 156 WTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLR 190
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 WTNYSAYSYFEVVTICDLIMILA-FYLVHLFRFYR 101
WT Y Y++ + T L+ ILA + +H F F R
Sbjct: 156 WTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLR 190
>gi|37622907 voltage-gated sodium channel type V alpha isoform a
[Homo sapiens]
Length = 2016
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 WTNYSAYSYFEVVTICDLIMILA-FYLVHLFRFYR 101
WT Y Y++ + T L+ ILA + +H F F R
Sbjct: 156 WTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLR 190
>gi|30089970 voltage-gated sodium channel type V alpha isoform b
[Homo sapiens]
Length = 2015
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 WTNYSAYSYFEVVTICDLIMILA-FYLVHLFRFYR 101
WT Y Y++ + T L+ ILA + +H F F R
Sbjct: 156 WTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLR 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,294,234
Number of Sequences: 37866
Number of extensions: 203863
Number of successful extensions: 1117
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 60
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.