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Search of human proteins with 30172548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30172548 developmentally regulated protein TPO1 [Homo
sapiens]
(423 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30172548 developmentally regulated protein TPO1 [Homo sapiens] 883 0.0
gi|24308213 serine incorporator 1 [Homo sapiens] 292 4e-79
gi|71834872 tumor differentially expressed 2-like [Homo sapiens] 274 1e-73
gi|39812106 tumor differentially expressed protein 1 [Homo sapiens] 265 8e-71
gi|5803193 tumor differentially expressed protein 1 [Homo sapiens] 265 8e-71
gi|75677608 serine incorporator 4 [Homo sapiens] 108 1e-23
gi|74315354 transient receptor potential cation channel, subfami... 33 0.64
gi|74315352 transient receptor potential cation channel, subfami... 33 0.64
gi|74315350 transient receptor potential cation channel, subfami... 33 0.64
gi|74315348 transient receptor potential cation channel, subfami... 33 0.64
gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens] 32 1.4
gi|239745066 PREDICTED: hypothetical protein XP_002344286 [Homo ... 31 1.9
gi|169204828 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|169205567 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|169204182 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|9506923 cysteine-rich C-terminal 1 [Homo sapiens] 30 4.1
gi|5174764 metallothionein 2A [Homo sapiens] 29 7.1
gi|59709427 XK, Kell blood group complex subunit-related family,... 29 7.1
gi|4505537 oxytocin-neurophysin I preproprotein [Homo sapiens] 29 9.2
gi|16306532 cadherin 11, type 2 preproprotein [Homo sapiens] 29 9.2
gi|239756750 PREDICTED: similar to TBC1 domain family, member 28... 29 9.2
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 29 9.2
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 29 9.2
gi|148235002 TBC1 domain family, member 26 [Homo sapiens] 29 9.2
gi|7662294 EPM2A interacting protein 1 [Homo sapiens] 29 9.2
gi|151108489 TBC1 domain family, member 28 [Homo sapiens] 29 9.2
>gi|30172548 developmentally regulated protein TPO1 [Homo sapiens]
Length = 423
Score = 883 bits (2282), Expect = 0.0
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MSAQCCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAH 60
MSAQCCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAH
Sbjct: 1 MSAQCCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAH 60
Query: 61 KMKEHIPFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRA 120
KMKEHIPFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRA
Sbjct: 61 KMKEHIPFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRA 120
Query: 121 HIHNGFWFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKW 180
HIHNGFWFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKW
Sbjct: 121 HIHNGFWFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKW 180
Query: 181 NKNWTAGTASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLC 240
NKNWTAGTASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLC
Sbjct: 181 NKNWTAGTASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLC 240
Query: 241 LLISLVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAEVVLDEHGKNVTICVP 300
LLISLVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAEVVLDEHGKNVTICVP
Sbjct: 241 LLISLVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAEVVLDEHGKNVTICVP 300
Query: 301 DFGQDLYRDENLVTILGTSLLIGCILYSCLTSTTRSSSDALQGRYAAPELEIARCCFCFS 360
DFGQDLYRDENLVTILGTSLLIGCILYSCLTSTTRSSSDALQGRYAAPELEIARCCFCFS
Sbjct: 301 DFGQDLYRDENLVTILGTSLLIGCILYSCLTSTTRSSSDALQGRYAAPELEIARCCFCFS 360
Query: 361 PGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVMMTVTNWFNHVRSAFH 420
PGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVMMTVTNWFNHVRSAFH
Sbjct: 361 PGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVMMTVTNWFNHVRSAFH 420
Query: 421 LLP 423
LLP
Sbjct: 421 LLP 423
>gi|24308213 serine incorporator 1 [Homo sapiens]
Length = 453
Score = 292 bits (747), Expect = 4e-79
Identities = 163/414 (39%), Positives = 234/414 (56%), Gaps = 20/414 (4%)
Query: 7 AGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHI 66
A + C CGSA C L C CCP S TR +YAL+ ++ V + C+M+ + ++ + I
Sbjct: 11 ASWIPCLCGSAPC-LLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNK-I 68
Query: 67 PFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGF 126
P F C+ K C LVGY AVYR+CFG+A F+ + LL +K+ +S RA +HNGF
Sbjct: 69 PGF---CENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGF 125
Query: 127 WFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKWNKNWTA 186
WFFK A+ GAFFIP+ TF W YVG G F FI IQL+LL++FAH WN++W
Sbjct: 126 WFFKFAAAIAIIIGAFFIPE-GTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 184
Query: 187 GT--ASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLCLLIS 244
+++ WYA+L T + Y ++ +VL V+YT SC ENK + VN LC+ S
Sbjct: 185 KMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYTHPASCSENKAFISVNMLLCVGAS 244
Query: 245 LVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPA----EVVLDEHGKNVTICVP 300
+++I P +Q QP SGLLQS VI+ Y YLT+SA++++P +L G N T VP
Sbjct: 245 VMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEPETNCNPSLLSIIGYNTTSTVP 304
Query: 301 DFGQDLYRDENLVTILGTSLLIGCILYSCLTSTTRSSSDALQGRYAAPELEIARCCFCFS 360
GQ + + + I+G L + C+ YS + ++ S + L L
Sbjct: 305 KEGQSV-QWWHAQGIIGLILFLLCVFYSSIRTSNNSQVNKL-------TLTSDESTLIED 356
Query: 361 PGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVMMTVTNWFNH 414
G + G + R + +E+ G Y YS+FHF+ FLASLY+MMT+TNW+ +
Sbjct: 357 GGARSDGSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRY 410
>gi|71834872 tumor differentially expressed 2-like [Homo sapiens]
Length = 455
Score = 274 bits (700), Expect = 1e-73
Identities = 156/413 (37%), Positives = 233/413 (56%), Gaps = 28/413 (6%)
Query: 11 ACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHIPFFE 70
+C CGSA C LC CCP R S +R ++ + L V++ IM+S V ++ + +P+
Sbjct: 15 SCLCGSAPCILC-SCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYK-LPWVC 72
Query: 71 DMCKGI----KAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGF 126
+ GI + C L+GY AVYR+CF A FFF F LL L +++S+ RA I NGF
Sbjct: 73 EEGAGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGF 132
Query: 127 WFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKWNKNWT- 185
WFFK L+L + GAF+IPD +F N W Y G VG FLFI IQL+LL++FAH WN+ W
Sbjct: 133 WFFKFLILVGLTVGAFYIPD-GSFTNIWFYFGVVGSFLFILIQLVLLIDFAHSWNQRWLG 191
Query: 186 -AGTASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLCLLIS 244
A ++ WYA L TL+ Y ++ + LM ++YT+ C E K+ + +N C+ +S
Sbjct: 192 KAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFISLNLTFCVCVS 251
Query: 245 LVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAEV----VLDEHGKNVTICVP 300
+ A+ P VQ+ QP+SGLLQ+ VI+ Y ++T+SALSS P + + + G + P
Sbjct: 252 IAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSSIPEQKCNPHLPTQLGNETVVAGP 311
Query: 301 DFGQDLYRDENLVTILGTSLLIGCILYSCLTSTT-RSSSDALQGRYAAPELEIARCCFCF 359
+ + + D +I+G + + C L+ L S+ R + +Q P L+ +
Sbjct: 312 EGYETQWWD--APSIVGLIIFLLCTLFISLRSSDHRQVNSLMQTEECPPMLDATQ----- 364
Query: 360 SPGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVMMTVTNWF 412
++QQ R +E+ G Y YS+FHF LASL+VMMT+TNW+
Sbjct: 365 -------QQQQVAACEGRAFDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWY 410
>gi|39812106 tumor differentially expressed protein 1 [Homo sapiens]
Length = 473
Score = 265 bits (676), Expect = 8e-71
Identities = 161/435 (37%), Positives = 230/435 (52%), Gaps = 45/435 (10%)
Query: 7 AGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHI 66
A + C C A C L C CCP + S TR +YA +L V+ IM + +K+ I
Sbjct: 11 ASWVPCLCSGASC-LLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKK-I 68
Query: 67 PFFEDMCKG--------IKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSC 118
P F C+G I A C+ LVGY AVYR+ F MA FFF+F LL K+ SK
Sbjct: 69 PGF---CEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDL 125
Query: 119 RAHIHNGFWFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAH 178
RA +HNGFWFFK+ L + G+F+IP F + W VG +G LFI IQL+LLV+FAH
Sbjct: 126 RAAVHNGFWFFKIAALIGIMVGSFYIPG-GYFSSVWFVVGMIGAALFILIQLVLLVDFAH 184
Query: 179 KWNKNWT--AGTASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVN 236
WN++W + +LWYA+L T Y ++ + L+ +YT+ D C ENK + +N
Sbjct: 185 SWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISIN 244
Query: 237 GGLCLLISLVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKP------------- 283
LC++ S+++I P +Q QP SGLLQS +I+ Y YLT+SA+S++P
Sbjct: 245 LILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFIT 304
Query: 284 ---AEVVLDEHGKNV--TICVPDFGQDLYRDENLVTILGTSLLIGCILYSCLTSTTRSSS 338
A + + V T P L +N + G + + C+LYS + ++T S
Sbjct: 305 RITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFI---GLFVFVLCLLYSSIRTSTNSQV 361
Query: 339 DALQGRYAAPELEIARCCFCFSPGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFF 398
D L + + G D E+ QP R + +EK+G Y YS FH +
Sbjct: 362 DKL----TLSGSDSVILGDTTTSGASDEEDGQPR----RAVDNEKEGVQYSYSLFHLMLC 413
Query: 399 LASLYVMMTVTNWFN 413
LASLY+MMT+T+W++
Sbjct: 414 LASLYIMMTLTSWYS 428
>gi|5803193 tumor differentially expressed protein 1 [Homo sapiens]
Length = 473
Score = 265 bits (676), Expect = 8e-71
Identities = 161/435 (37%), Positives = 230/435 (52%), Gaps = 45/435 (10%)
Query: 7 AGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHI 66
A + C C A C L C CCP + S TR +YA +L V+ IM + +K+ I
Sbjct: 11 ASWVPCLCSGASC-LLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKK-I 68
Query: 67 PFFEDMCKG--------IKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSC 118
P F C+G I A C+ LVGY AVYR+ F MA FFF+F LL K+ SK
Sbjct: 69 PGF---CEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDL 125
Query: 119 RAHIHNGFWFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAH 178
RA +HNGFWFFK+ L + G+F+IP F + W VG +G LFI IQL+LLV+FAH
Sbjct: 126 RAAVHNGFWFFKIAALIGIMVGSFYIPG-GYFSSVWFVVGMIGAALFILIQLVLLVDFAH 184
Query: 179 KWNKNWT--AGTASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVN 236
WN++W + +LWYA+L T Y ++ + L+ +YT+ D C ENK + +N
Sbjct: 185 SWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISIN 244
Query: 237 GGLCLLISLVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKP------------- 283
LC++ S+++I P +Q QP SGLLQS +I+ Y YLT+SA+S++P
Sbjct: 245 LILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFIT 304
Query: 284 ---AEVVLDEHGKNV--TICVPDFGQDLYRDENLVTILGTSLLIGCILYSCLTSTTRSSS 338
A + + V T P L +N + G + + C+LYS + ++T S
Sbjct: 305 RITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFI---GLFVFVLCLLYSSIRTSTNSQV 361
Query: 339 DALQGRYAAPELEIARCCFCFSPGGEDTEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFF 398
D L + + G D E+ QP R + +EK+G Y YS FH +
Sbjct: 362 DKL----TLSGSDSVILGDTTTSGASDEEDGQPR----RAVDNEKEGVQYSYSLFHLMLC 413
Query: 399 LASLYVMMTVTNWFN 413
LASLY+MMT+T+W++
Sbjct: 414 LASLYIMMTLTSWYS 428
>gi|75677608 serine incorporator 4 [Homo sapiens]
Length = 274
Score = 108 bits (269), Expect = 1e-23
Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 11/182 (6%)
Query: 242 LISLVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAEVVLDEHGKNVTICVPD 301
L+ L+ I P + QP SGLLQ+ VISCY+ YLTFSALSS+P E V+ + G+N T+C+P
Sbjct: 26 LLQLLPI-PGTRTEQPRSGLLQASVISCYIMYLTFSALSSRPPERVILQ-GQNHTLCLPG 83
Query: 302 FGQ-DLYRDENLVTILGTSLLIGCILYSCLTSTTRSS--SDALQGRYAAPELEIARCCFC 358
+ + + + +L S++ C+L++C ++ + + + E + CFC
Sbjct: 84 LSKMEPQTPDISLAMLSASIMYACVLFACNEASYLAEVFGPLWIVKVYSYEFQKPSLCFC 143
Query: 359 FSPGGEDTEEQQPG------KEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVMMTVTNWF 412
E + Q+ G +E P + + Y YS FHFVFFLASLYVM+T+TNWF
Sbjct: 144 CPETVEADKGQRGGAARPADQETPPAPPVQVQHLSYNYSAFHFVFFLASLYVMVTLTNWF 203
Query: 413 NH 414
++
Sbjct: 204 SY 205
>gi|74315354 transient receptor potential cation channel, subfamily
V, member 1 [Homo sapiens]
Length = 839
Score = 32.7 bits (73), Expect = 0.64
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 386 TVYIYSYFHFVFFLASLYVMMTVTNWFNHVR 416
T+++ SY +FFL SL+++ TV +F+H++
Sbjct: 505 TLFVDSYSEMLFFLQSLFMLATVVLYFSHLK 535
>gi|74315352 transient receptor potential cation channel, subfamily
V, member 1 [Homo sapiens]
Length = 839
Score = 32.7 bits (73), Expect = 0.64
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 386 TVYIYSYFHFVFFLASLYVMMTVTNWFNHVR 416
T+++ SY +FFL SL+++ TV +F+H++
Sbjct: 505 TLFVDSYSEMLFFLQSLFMLATVVLYFSHLK 535
>gi|74315350 transient receptor potential cation channel, subfamily
V, member 1 [Homo sapiens]
Length = 839
Score = 32.7 bits (73), Expect = 0.64
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 386 TVYIYSYFHFVFFLASLYVMMTVTNWFNHVR 416
T+++ SY +FFL SL+++ TV +F+H++
Sbjct: 505 TLFVDSYSEMLFFLQSLFMLATVVLYFSHLK 535
>gi|74315348 transient receptor potential cation channel, subfamily
V, member 1 [Homo sapiens]
Length = 839
Score = 32.7 bits (73), Expect = 0.64
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 386 TVYIYSYFHFVFFLASLYVMMTVTNWFNHVR 416
T+++ SY +FFL SL+++ TV +F+H++
Sbjct: 505 TLFVDSYSEMLFFLQSLFMLATVVLYFSHLK 535
>gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 1 MSAQCCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMY 39
++ +CC + CC GC+ CC CC R+ R +
Sbjct: 283 LTIRCCCCRRRCC----GCNCCCRCCFCCRRKRGFRIQF 317
>gi|239745066 PREDICTED: hypothetical protein XP_002344286 [Homo
sapiens]
Length = 219
Score = 31.2 bits (69), Expect = 1.9
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 94 VCFGMACFFFIFCLLTLKINNSKSCRAHIHNGFWFFKLLLLGAMCSGAFFIPDQDTFLNA 153
+ F +C F IF L + I+ C +I N F + L CS I +
Sbjct: 84 IIFAWSCVFVIFLTLVILISQLSYCGPNIINHFICDPVPLKMLSCSEDIII--TQLIYST 141
Query: 154 WRYVGAVGGFLFI----GIQLLLLVEFAHKWNKNWTAGTASNKLWYASLALVTLIMYSI 208
+ V +G FLFI + +L ++ + K T + + LA+VTL SI
Sbjct: 142 FNSVFIIGTFLFILCSYALVILAIIRMPSEAGKRKAFSTCA-----SHLAVVTLFYGSI 195
>gi|169204828 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 30.0 bits (66), Expect = 4.1
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 5 CCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYF 43
CC CCC C CC C I S S+ M +F
Sbjct: 155 CCC---CCCCCCCCCCWCCSCLGGISSSPSSVRMQHFFF 190
>gi|169205567 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 30.0 bits (66), Expect = 4.1
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 5 CCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYF 43
CC CCC C CC C I S S+ M +F
Sbjct: 155 CCC---CCCCCCCCCCWCCSCLGGISSSPSSVRMQHFFF 190
>gi|169204182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 30.0 bits (66), Expect = 4.1
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 5 CCAGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYF 43
CC CCC C CC C I S S+ M +F
Sbjct: 156 CCC---CCCCCCCCCCWCCSCLGGISSSPSSVRMQHFFF 191
Score = 29.6 bits (65), Expect = 5.4
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 2 SAQCCAGQLACCCGSAGCSLCCDCC 26
SA C G CCC C CC CC
Sbjct: 148 SAGPCPGCCCCCC----CCCCCCCC 168
>gi|9506923 cysteine-rich C-terminal 1 [Homo sapiens]
Length = 99
Score = 30.0 bits (66), Expect = 4.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 2 SAQCCAGQLACCCGSAGC----SLCCDCCPRIRQ 31
S+ C G CCG +GC S C C PR R+
Sbjct: 35 SSSSCCGSGRGCCGDSGCCGSSSTSCCCFPRRRR 68
Score = 28.9 bits (63), Expect = 9.2
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 2 SAQCCAGQLACC-----CGSAGCSLCCDCCPRIRQSLS 34
S+ CC CC CGS+ S CC R RQ S
Sbjct: 36 SSSCCGSGRGCCGDSGCCGSSSTSCCCFPRRRRRQRSS 73
>gi|5174764 metallothionein 2A [Homo sapiens]
Length = 61
Score = 29.3 bits (64), Expect = 7.1
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 2 SAQCCAGQLACCCGSAGC---------SLCCDCCP 27
+ C AG C GS C CC CCP
Sbjct: 4 NCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCP 38
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 29.3 bits (64), Expect = 7.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 12 CCCGSAGCSLCCDCC 26
CC GCS CC CC
Sbjct: 54 CCPDGGGCSRCCCCC 68
>gi|4505537 oxytocin-neurophysin I preproprotein [Homo sapiens]
Length = 125
Score = 28.9 bits (63), Expect = 9.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 317 GTSLLIGCILYSCLTSTTRSSSDALQGRYAAPELEIARCCFCFSPGGE 364
G SL + LTS + L G+ AAP+L++ +C C PGG+
Sbjct: 3 GPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPC-GPGGK 49
>gi|16306532 cadherin 11, type 2 preproprotein [Homo sapiens]
Length = 796
Score = 28.9 bits (63), Expect = 9.2
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 12 CCCGSAGCSLCCDCCPRIRQS-LSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHIPFFE 70
C C G L C+ I + LST + A+ +V++L +++ T+ + KE + FE
Sbjct: 593 CGCDVNGALLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFE 652
Query: 71 D 71
+
Sbjct: 653 E 653
>gi|239756750 PREDICTED: similar to TBC1 domain family, member 28
[Homo sapiens]
Length = 234
Score = 28.9 bits (63), Expect = 9.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 48 VLCCIMMSTTVAHKMKEHIPFFEDMCKGIKAGDTCEKLVGYSA 90
++ CI + V+H +++H+ F + G+K + C+ LV YSA
Sbjct: 165 IIHCIQLD--VSHTLQKHMMFIQRF--GVKQQELCDILVAYSA 203
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 28.9 bits (63), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 5 CCAGQLACCCGSAGCSLCCDCCPR 28
C +G + CCG+ G CC PR
Sbjct: 76 CSSGAYSFCCGTCGYRFCCHDGPR 99
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 28.9 bits (63), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 5 CCAGQLACCCGSAGCSLCCDCCPR 28
C +G + CCG+ G CC PR
Sbjct: 76 CSSGAYSFCCGTCGYRFCCHDGPR 99
>gi|148235002 TBC1 domain family, member 26 [Homo sapiens]
Length = 250
Score = 28.9 bits (63), Expect = 9.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 48 VLCCIMMSTTVAHKMKEHIPFFEDMCKGIKAGDTCEKLVGYSA 90
++ CI + V+H +++H+ F + G+K + C+ LV YSA
Sbjct: 141 IIHCIQLD--VSHTLQKHMMFIQRF--GVKQQELCDILVAYSA 179
>gi|7662294 EPM2A interacting protein 1 [Homo sapiens]
Length = 607
Score = 28.9 bits (63), Expect = 9.2
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 156 YVGAVGGFLFIGIQLLLLVEFAHKWNKNWTAGTASNKLWYASLALVTLIMYSIATGGLVL 215
++ VG L + LL ++ H ++ AL++ I+ S+ T GL L
Sbjct: 194 FIRGVGPELEVQEDLLTIINLTHHFSVG---------------ALMSAILESLQTAGLSL 238
Query: 216 MAVFYTQKDSCMENKILLGVNGGLCLLISLVAISPWVQNRQPHSGLLQSGVISCY 270
+ + ++G N GL + A+SP N +SG L ++S Y
Sbjct: 239 QRMVGLTTTHTLR---MIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSY 290
>gi|151108489 TBC1 domain family, member 28 [Homo sapiens]
Length = 210
Score = 28.9 bits (63), Expect = 9.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 48 VLCCIMMSTTVAHKMKEHIPFFEDMCKGIKAGDTCEKLVGYSA 90
++ CI + V+H +++H+ F + G+K + C+ LV YSA
Sbjct: 141 IIHCIQLD--VSHTLQKHMMFIQRF--GVKQQELCDILVAYSA 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,798,251
Number of Sequences: 37866
Number of extensions: 685765
Number of successful extensions: 2706
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2609
Number of HSP's gapped (non-prelim): 53
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.