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Search of human proteins with 122937335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937335 F-box protein 46 [Homo sapiens]
(603 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937335 F-box protein 46 [Homo sapiens] 1276 0.0
gi|195222730 F-box only protein 34 [Homo sapiens] 288 1e-77
gi|40807493 F-box only protein 34 [Homo sapiens] 288 1e-77
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 64 3e-10
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 57 4e-08
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 55 2e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 52 2e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 52 2e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 52 2e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 49 1e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 49 1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 3e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 48 3e-05
gi|153070260 myristoylated alanine-rich protein kinase C substra... 47 7e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 46 1e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 45 1e-04
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 45 2e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 45 3e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 3e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 44 4e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 44 4e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 44 4e-04
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 43 7e-04
gi|156416026 zinc finger protein 219 [Homo sapiens] 43 7e-04
gi|156415998 zinc finger protein 219 [Homo sapiens] 43 7e-04
gi|156415996 zinc finger protein 219 [Homo sapiens] 43 7e-04
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 43 0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 43 0.001
gi|39812378 RAN binding protein 9 [Homo sapiens] 42 0.001
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 42 0.001
>gi|122937335 F-box protein 46 [Homo sapiens]
Length = 603
Score = 1276 bits (3303), Expect = 0.0
Identities = 603/603 (100%), Positives = 603/603 (100%)
Query: 1 MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPAL 60
MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPAL
Sbjct: 1 MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPAL 60
Query: 61 ATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKV 120
ATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKV
Sbjct: 61 ATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKV 120
Query: 121 KGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVE 180
KGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVE
Sbjct: 121 KGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVE 180
Query: 181 QRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDS 240
QRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDS
Sbjct: 181 QRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDS 240
Query: 241 PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARA 300
PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARA
Sbjct: 241 PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARA 300
Query: 301 KDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCG 360
KDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCG
Sbjct: 301 KDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCG 360
Query: 361 ASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP 420
ASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP
Sbjct: 361 ASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP 420
Query: 421 EPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHV 480
EPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHV
Sbjct: 421 EPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHV 480
Query: 481 LVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKG 540
LVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKG
Sbjct: 481 LVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKG 540
Query: 541 DVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGRE 600
DVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGRE
Sbjct: 541 DVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGRE 600
Query: 601 EGR 603
EGR
Sbjct: 601 EGR 603
>gi|195222730 F-box only protein 34 [Homo sapiens]
Length = 711
Score = 288 bits (737), Expect = 1e-77
Identities = 216/670 (32%), Positives = 302/670 (45%), Gaps = 133/670 (19%)
Query: 28 PSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLD 87
PSA+L ++ +P G P+ + S +P + V + AP + +EG LD
Sbjct: 49 PSASLGKASSRKPFGILSPNVLCSMSGKSPVESSLNVKTKKNAPSATIHQGEEEGP--LD 106
Query: 88 TWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAP--- 144
W V+KPGNTKEK+AFF +HQC +R SMK+K W D KRR++ D KA
Sbjct: 107 IWAVVKPGNTKEKIAFFASHQCS--NRIGSMKIKSSWDIDGRATKRRKKSGDLKKAKVQV 164
Query: 145 ------------PDPGGREGPPAAEEGPASAGEDVDL---LSVAEMVALVEQRAALALQS 189
P+P + + +G+ V LSV +MVA +EQRA+ L S
Sbjct: 165 ERMREVNSRCYQPEPFACGIEHCSVHYVSDSGDGVYAGRPLSVIQMVAFLEQRASALLAS 224
Query: 190 YPRPTTPAPVV--FVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGL- 246
+ T +P + F +G PA SE S G C E + S P + L
Sbjct: 225 CSKNCTNSPAIVRFSGQSRGVPAV---SESYSAPGACEEPTERGNLEVGEPQSEPVRVLD 281
Query: 247 ----------RKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGP 296
+++ + PG +FR + GR A + G + P +
Sbjct: 282 MVAKLESECLKRQGQREPGSLSRNNSFRRNVGRVLLANSTQADEGKTKKGVLEAPDT--- 338
Query: 297 GARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPP---- 352
+ + S S D PS + + D+A +G S +D PP P
Sbjct: 339 ----------QVNPVGSVSVDCGPSRADRCSPKEDQAWDGAS------QDCPPLPAGVSF 382
Query: 353 -------PPPARDCGASGFHVDVVVTGVVDECIFFGKDGTK------------------- 386
P ++ + DV +T + F ++
Sbjct: 383 HIDSAELEPGSQTAVKNSNRYDVEMTDELVGLPFSSHTYSQASELPTDAVDCMSRELVSL 442
Query: 387 -----NVKEETVCLTVSPE-------------EPPPPGQLFFL---------QNRGPDGP 419
+ ++E++C++++ E P PG LFFL
Sbjct: 443 TSRNPDQRKESLCISITVSKVDKDQPSILNSCEDPVPGMLFFLPPGQHLSDYSQLNESTT 502
Query: 420 PEPPPADSPATAPGPDDAE--------------GTADTSLCRLY-----RHVSHDFLEIR 460
E A A G D A + +++L L + VSHDFLE R
Sbjct: 503 KESSEASQLEDAAGGDSASEEKSGSAEPFVLPASSVESTLPVLEASSWKKQVSHDFLETR 562
Query: 461 FKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWS 520
FKIQ+LLEP+QYM LP H++VKIF LPT++L ALKCTC +FK IIE + +R DSRW
Sbjct: 563 FKIQQLLEPQQYMAFLPHHIMVKIFRLLPTKSLVALKCTCCYFKFIIEYYNIRPADSRWV 622
Query: 521 RDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGL 580
RDP YR+DPCKQC+K+Y KGDVSLCRWHPKPY LPYG YWMCC R+ + PGC+LGL
Sbjct: 623 RDPRYREDPCKQCKKKYVKGDVSLCRWHPKPYCQALPYGPGYWMCCHRSQKGFPGCKLGL 682
Query: 581 HDNNWVLPCN 590
HDN+WV C+
Sbjct: 683 HDNHWVPACH 692
>gi|40807493 F-box only protein 34 [Homo sapiens]
Length = 711
Score = 288 bits (737), Expect = 1e-77
Identities = 216/670 (32%), Positives = 302/670 (45%), Gaps = 133/670 (19%)
Query: 28 PSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLD 87
PSA+L ++ +P G P+ + S +P + V + AP + +EG LD
Sbjct: 49 PSASLGKASSRKPFGILSPNVLCSMSGKSPVESSLNVKTKKNAPSATIHQGEEEGP--LD 106
Query: 88 TWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAP--- 144
W V+KPGNTKEK+AFF +HQC +R SMK+K W D KRR++ D KA
Sbjct: 107 IWAVVKPGNTKEKIAFFASHQCS--NRIGSMKIKSSWDIDGRATKRRKKSGDLKKAKVQV 164
Query: 145 ------------PDPGGREGPPAAEEGPASAGEDVDL---LSVAEMVALVEQRAALALQS 189
P+P + + +G+ V LSV +MVA +EQRA+ L S
Sbjct: 165 ERMREVNSRCYQPEPFACGIEHCSVHYVSDSGDGVYAGRPLSVIQMVAFLEQRASALLAS 224
Query: 190 YPRPTTPAPVV--FVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGL- 246
+ T +P + F +G PA SE S G C E + S P + L
Sbjct: 225 CSKNCTNSPAIVRFSGQSRGVPAV---SESYSAPGACEEPTERGNLEVGEPQSEPVRVLD 281
Query: 247 ----------RKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGP 296
+++ + PG +FR + GR A + G + P +
Sbjct: 282 MVAKLESECLKRQGQREPGSLSRNNSFRRNVGRVLLANSTQADEGKTKKGVLEAPDT--- 338
Query: 297 GARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPP---- 352
+ + S S D PS + + D+A +G S +D PP P
Sbjct: 339 ----------QVNPVGSVSVDCGPSRADRCSPKEDQAWDGAS------QDCPPLPAGVSF 382
Query: 353 -------PPPARDCGASGFHVDVVVTGVVDECIFFGKDGTK------------------- 386
P ++ + DV +T + F ++
Sbjct: 383 HIDSAELEPGSQTAVKNSNRYDVEMTDELVGLPFSSHTYSQASELPTDAVDCMSRELVSL 442
Query: 387 -----NVKEETVCLTVSPE-------------EPPPPGQLFFL---------QNRGPDGP 419
+ ++E++C++++ E P PG LFFL
Sbjct: 443 TSRNPDQRKESLCISITVSKVDKDQPSILNSCEDPVPGMLFFLPPGQHLSDYSQLNESTT 502
Query: 420 PEPPPADSPATAPGPDDAE--------------GTADTSLCRLY-----RHVSHDFLEIR 460
E A A G D A + +++L L + VSHDFLE R
Sbjct: 503 KESSEASQLEDAAGGDSASEEKSGSAEPFVLPASSVESTLPVLEASSWKKQVSHDFLETR 562
Query: 461 FKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWS 520
FKIQ+LLEP+QYM LP H++VKIF LPT++L ALKCTC +FK IIE + +R DSRW
Sbjct: 563 FKIQQLLEPQQYMAFLPHHIMVKIFRLLPTKSLVALKCTCCYFKFIIEYYNIRPADSRWV 622
Query: 521 RDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGL 580
RDP YR+DPCKQC+K+Y KGDVSLCRWHPKPY LPYG YWMCC R+ + PGC+LGL
Sbjct: 623 RDPRYREDPCKQCKKKYVKGDVSLCRWHPKPYCQALPYGPGYWMCCHRSQKGFPGCKLGL 682
Query: 581 HDNNWVLPCN 590
HDN+WV C+
Sbjct: 683 HDNHWVPACH 692
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 64.3 bits (155), Expect = 3e-10
Identities = 116/432 (26%), Positives = 139/432 (32%), Gaps = 64/432 (14%)
Query: 25 PRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRV 84
P P A P A +PG EP A + PP A PA P P+ + A G +G
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG--PAGPPGPIGNVGAPGAKGA- 864
Query: 85 LLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKR-------RRRC 137
PG T A G A G G + K R R
Sbjct: 865 ---RGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921
Query: 138 LDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAE---MVALVEQRAALALQSYPRPT 194
+ P PP P G +G P A+ GPA A +A +V L QR P P+
Sbjct: 922 VGPP-GPPGPAGEKGSPGAD-GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 979
Query: 195 TPAPVVFVSAEQG--GPAKGVGSERRSGG-GDCSRVAEAVAHFEAQRD-SPPTKGLRKEE 250
S G GP +G +G G+ R A RD SP KG R E
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET 1039
Query: 251 RPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQ 310
P PG P AP + P G G+ G G GP A
Sbjct: 1040 GPAGPPGA------------PGAPGAPGPVGPAGKSGDR--GETGPAGPAGP-------- 1077
Query: 311 LISPSRDALPSNVEFLLARADEASE-GDSPAPARPEDT----PPAPPPPPARDCGASGFH 365
+ P P+ + E E GD + PP PP P G SG
Sbjct: 1078 -VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ-GPSGAS 1135
Query: 366 VDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPA 425
G GKDG + P PPG + GP GPP PP
Sbjct: 1136 GPAGPRGPPGSAGAPGKDGLNGL----------PGPIGPPGPRGRTGDAGPVGPPGPP-- 1183
Query: 426 DSPATAPGPDDA 437
P PGP A
Sbjct: 1184 -GPPGPPGPPSA 1194
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/319 (26%), Positives = 101/319 (31%), Gaps = 57/319 (17%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPA----PV 199
PP P G GPP A+ P + GE D A P P PA P+
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGEPGD-------------AGAKGDAGPPGPAGPAGPPGPI 853
Query: 200 VFVSAEQGGPAKGVGSERRSGG--GDCSRVAEAVAHFEAQRDSPP-------TKGLRKEE 250
V A A+G + G G RV A PP KG R E
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET 913
Query: 251 RPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPG----CAYPGSPGPGARAKDKITC 306
P PGEV P P P+G G PG PG+PGP A +
Sbjct: 914 GPAGRPGEV----------GPPGPPG--PAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961
Query: 307 DL-YQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFH 365
L Q LP + +G P+ A E PP P PP G G
Sbjct: 962 GLPGQRGERGFPGLPG------PSGEPGKQG--PSGASGERGPPGPMGPPGL-AGPPGES 1012
Query: 366 VDVVVTGVVDECIFFGKDGTKNVKEET-----VCLTVSPEEPPPPGQLFFLQNRGPDGPP 420
G G G K + ET +P P P G +RG GP
Sbjct: 1013 GREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA 1072
Query: 421 EPPPADSPATAPGPDDAEG 439
P P A GP +G
Sbjct: 1073 GPAGPVGPVGARGPAGPQG 1091
Score = 47.4 bits (111), Expect = 4e-05
Identities = 106/422 (25%), Positives = 127/422 (30%), Gaps = 54/422 (12%)
Query: 25 PRPPSAALKPSACPEPGGGAEPDH-GPAHSENTPPALATEVPASQPAPLLSAAAAGDEGR 83
P P AA +P E G P GPA + A PA AG G
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642
Query: 84 VLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKA 143
L PG A G + V G G+ R R +
Sbjct: 643 QGL-------PGP---------AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG 686
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
P G GP A P + G D A + A LQ P A +
Sbjct: 687 VQGPPGPAGPRGANGAPGNDGAKGD----AGAPGAPGSQGAPGLQGMPGERGAAGLPGPK 742
Query: 204 AEQG--GPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRI 261
++G GP GS G D R +P KG E P G
Sbjct: 743 GDRGDAGPKGADGSP----GKDGVRGLTGPIGPPGPAGAPGDKG---ESGPSGPAGPTGA 795
Query: 262 AFRISNGREPRAPDSGLPSGGGGRPGC-AYPGSPGPGARAKDKITCDLYQLISPSRDALP 320
+ EP P P+G G PG PG+ G A K P+ P
Sbjct: 796 RGAPGDRGEPGPPG---PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGP 852
Query: 321 -SNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIF 379
NV A+ S G A P PP P+ + G G
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA----------- 901
Query: 380 FGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEG 439
GK+G K + ET P E PPG GP G P AD PA APG +G
Sbjct: 902 -GKEGGKGPRGETGPAG-RPGEVGPPGP------PGPAGEKGSPGADGPAGAPGTPGPQG 953
Query: 440 TA 441
A
Sbjct: 954 IA 955
Score = 46.6 bits (109), Expect = 7e-05
Identities = 78/310 (25%), Positives = 96/310 (30%), Gaps = 77/310 (24%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
PP P G GPP + GE A ++ P P PA
Sbjct: 333 PPGPTGPAGPPGFPGAVGAKGE-------AGPQGPRGSEGPQGVRGEPGPPGPAGA---- 381
Query: 204 AEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAF 263
GPA G++ + G ++ A P +G + PG PG
Sbjct: 382 ---AGPAGNPGADGQPG----AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPK---- 430
Query: 264 RISNGREPRAPDSGLPSGGGGRPG-CAYPGSPGP-------GARAKDKIT---CDLYQLI 312
N EP AP S +G G PG G PGP GAR + T +
Sbjct: 431 --GNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERG 488
Query: 313 SPSRDALPSNVEFLLARADEASEGDSPAPARPEDTP-PAPPPPPARDCGASGFHVDVVVT 371
P P + + A E SP PA P+ +P A P A GA G
Sbjct: 489 GPGSRGFP-GADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKG-------- 539
Query: 372 GVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATA 431
LT SP P P G+ GPP P D
Sbjct: 540 -----------------------LTGSPGSPGPDGK---------TGPPGPAGQDGRPGP 567
Query: 432 PGPDDAEGTA 441
PGP A G A
Sbjct: 568 PGPPGARGQA 577
Score = 43.9 bits (102), Expect = 4e-04
Identities = 106/434 (24%), Positives = 140/434 (32%), Gaps = 95/434 (21%)
Query: 16 PFGTYSQNQPRPPSAALKPSACP----EPGG-GAEPDHGPAHSENTPPALATEVPASQPA 70
P G + P P+ A P+ P +PG GA G A + P A P
Sbjct: 366 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425
Query: 71 PLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSK 130
P +G+ G PG+ + G + V+G G +
Sbjct: 426 PPGPKGNSGEPGA----------PGSKGDT---------GAKGEPGPVGVQGPPGPAGEE 466
Query: 131 AKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSY 190
KR R P P G GPP GP S G A+ VA
Sbjct: 467 GKRGAR------GEPGPTGLPGPPGERGGPGSRG-----FPGADGVA------------- 502
Query: 191 PRPTTPAPVVFVSAEQG--GPAKGVGSERRSGGGDCSRVAEA-VAHFEAQRDSPPTKGLR 247
P PA E+G GPA GS G+ R EA + + SP + G
Sbjct: 503 -GPKGPA------GERGSPGPAGPKGSP-----GEAGRPGEAGLPGAKGLTGSPGSPGPD 550
Query: 248 KEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCD 307
+ P PGP G++ R G P G G+ G G PGP A +
Sbjct: 551 GKTGP-PGPA----------GQDGRPGPPG-PPGARGQAGVM--GFPGPKGAAGEPGKAG 596
Query: 308 LYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVD 367
+ P P+ +G++ A P PA G+ GF
Sbjct: 597 ERGVPGPPGAVGPA-----------GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL 645
Query: 368 VVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADS 427
G E GK G + V + +P G+ F RG GPP P
Sbjct: 646 PGPAGPPGEA---GKPGEQGVPGD----LGAPGPSGARGERGFPGERGVQGPPGPAGPRG 698
Query: 428 PATAPGPDDAEGTA 441
APG D A+G A
Sbjct: 699 ANGAPGNDGAKGDA 712
Score = 33.9 bits (76), Expect = 0.44
Identities = 53/204 (25%), Positives = 61/204 (29%), Gaps = 43/204 (21%)
Query: 239 DSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGA 298
D K R ER PGP G +GLP G R G+ G
Sbjct: 232 DGEAGKPGRPGERGPPGP----------QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAG 281
Query: 299 RAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEG-DSPAPARPED--TPPAPPPPP 355
A K + SP + P + + G PA AR D T A PP P
Sbjct: 282 PAGPK-----GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP 336
Query: 356 ARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRG 415
G GF V G G +G + V RG
Sbjct: 337 TGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV-------------------------RG 371
Query: 416 PDGPPEPPPADSPATAPGPDDAEG 439
GPP P A PA PG D G
Sbjct: 372 EPGPPGPAGAAGPAGNPGADGQPG 395
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 57.4 bits (137), Expect = 4e-08
Identities = 75/288 (26%), Positives = 99/288 (34%), Gaps = 57/288 (19%)
Query: 185 LALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTK 244
L +++ P PAP F + + + G G +A A +R + P
Sbjct: 608 LVSETWASPLFPAPRPFPAQSSASGSFLLSGWDPEGRGAGETLAGDPAEVLGERGTAPWV 667
Query: 245 GLRKEERPGPGPGEVRIAFRISNGREPRAP-----------DSGLP-------SGGGGRP 286
+EE G PGE + + G R P S LP +G GG P
Sbjct: 668 EEEEEEEEGSSPGEDSSS--LGGGPSRRGPLPCPLCSREGACSCLPLERGDAVAGWGGHP 725
Query: 287 --GCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARP 344
GC +P RA+ DL ++P A P ++ L+ A G P PA P
Sbjct: 726 ALGCPHPPEDDSSLRAERGSLADLP--MAPPASAPPEFLDPLMGAAAPQYPGRGPPPAPP 783
Query: 345 EDTPPAPPPPPARDCGASGFHVDVVVT---------------GVVDECIFFGKD---GTK 386
PP PPP D AS V + G E F + G
Sbjct: 784 ---PPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGG 840
Query: 387 NVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGP 434
+EE V +P EPP PG P PPP P PGP
Sbjct: 841 AAEEEGVPRPRAPPEPPDPGA------------PRPPPDPGPLPLPGP 876
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 54.7 bits (130), Expect = 2e-07
Identities = 107/443 (24%), Positives = 148/443 (33%), Gaps = 105/443 (23%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSEN------TPPALATEVPAS 67
P G + +Q R A L+ G A GP H +PP+ A PA
Sbjct: 57 PALAGPPAHSQLRAAVAHLRLRDLGADPGVATTPLGPEHMAQASTLGLSPPSQA--FPAH 114
Query: 68 QPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSD 127
AP +A AA V PG ++ CGGGS G+
Sbjct: 115 PEAPAAAARAAA----------LVAHPGAG--------SYPCGGGSS----------GAQ 146
Query: 128 SSKAKRRRRCLDPTKAPPDPGGREGPPAA-------EEGPASAGED--------VDLLSV 172
S L PT +PP P PPA G S+G+ DL +
Sbjct: 147 PSAPPPPAPPLPPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHSRDFVLRRDLSAT 206
Query: 173 AEMVAL------VEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSR 226
A A+ EQR+ +P P + +F+S A G + GG
Sbjct: 207 APAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFIS------ASGTYAGPDGSGGP--- 257
Query: 227 VAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRP 286
A F A D+P G P P G++R+ + R
Sbjct: 258 -----ALFPALHDTPGAPG----GHPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPRS 308
Query: 287 GCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPED 346
G A+ G+ A A Y + N+ LA A A+ +
Sbjct: 309 GDAHYGAVAAAAAA----ALHGYGAV---------NLNLNLAAAAAAAAAGPGPHLQHHA 355
Query: 347 TPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEE----P 402
PPAPPPPPA H + G + + + + +K+E +C + P+E P
Sbjct: 356 PPPAPPPPPAPAQHPHQHHPH--LPGAAGAFLRYMR---QPIKQELICKWIDPDELAGLP 410
Query: 403 PPPGQLFFLQNRGPDGPPEPPPA 425
PPP P PP PPPA
Sbjct: 411 PPPPP--------PPPPPPPPPA 425
Score = 30.4 bits (67), Expect = 4.9
Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 339 PAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVS 398
PAP P P PPPPP SG+ G GK +++ +
Sbjct: 153 PAPPLPPTPSPPPPPPPPPPPALSGYTTTNSGGGGSS-----GKGHSRDFVLRRDLSATA 207
Query: 399 PEEPPPPGQLFFLQNRGPDGP--PEPPP------ADSPATAPGPDDAEGTA 441
P L Q G P P PPP + T GPD + G A
Sbjct: 208 PAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPA 258
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 52.0 bits (123), Expect = 2e-06
Identities = 90/367 (24%), Positives = 123/367 (33%), Gaps = 57/367 (15%)
Query: 112 GSRASSMK--VKGHWGSDSSKAKRRRRCLDPTKAP---PDPGGREGPPAAEEGPASAGED 166
G R ++ K KG G D R L + P P P G GPP + P G+
Sbjct: 764 GPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQR 823
Query: 167 VDL-----------LSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGS 215
++ V + + + +P P P EQG P G
Sbjct: 824 GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP------GEQGLPGTA-GK 876
Query: 216 ERRSG-----GGDCSRVAEAVAHFEAQRDSPPTKG---LRKEERPGPGPGEVRIAFRISN 267
E G G + F +R P T G L+ E P PG +
Sbjct: 877 EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA------GS 930
Query: 268 GREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDA------LPS 321
E A SG P G GRPG P P PGA + + + + RD LP
Sbjct: 931 PGERGAAGSGGPIGPPGRPG---PQGP-PGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 986
Query: 322 NVEFLLARADEASEGDSPAPARP-------EDTPPAPPPP--PARDCGASGFHVDVVVTG 372
++ +G+ P + E PP PP P P GA+G + G
Sbjct: 987 PAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARG 1046
Query: 373 VVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAP 432
G +GT+ + + P P G+ + GP GPP PP PA
Sbjct: 1047 PQGHFGAKGDEGTRGFNGPPGPIGLQGL-PGPSGEKGETGDVGPMGPPGPPGPRGPAGPN 1105
Query: 433 GPDDAEG 439
G D +G
Sbjct: 1106 GADGPQG 1112
Score = 43.1 bits (100), Expect = 7e-04
Identities = 84/318 (26%), Positives = 107/318 (33%), Gaps = 57/318 (17%)
Query: 142 KAPPDPGGREGP--PAAEEGPAS----AGEDVDLLSVAEMVALVEQRAALALQSYPRPTT 195
K P P GR+G P GPA AGED D V + Q+ + P
Sbjct: 967 KGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDP----GQKGTKGNKGEHGPPG 1022
Query: 196 PAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPG 255
P GP VG +G HF A+ D +G R P PG
Sbjct: 1023 PP----------GPIGPVGQPGAAGADGEPGARGPQGHFGAKGD----EGTRGFNGP-PG 1067
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPS 315
P ++ +G + D G P G G PG P P GA + L P
Sbjct: 1068 PIGLQ-GLPGPSGEKGETGDVG-PMGPPGPPGPRGPAGPN-GADGPQGPPGGVGNLGPPG 1124
Query: 316 RDALPSNVE---------FLLARADEASEGDSPAPARPEDTPPAPPPP-----PARDCGA 361
P R + +G+S P P PP P P P + G
Sbjct: 1125 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPGP 1182
Query: 362 SGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPE 421
GF D G E G+DG K + E P +P PG G +GPP
Sbjct: 1183 VGFPGD---PGPPGEGGPRGQDGAKGDRGEDG----EPGQPGSPGPT------GENGPPG 1229
Query: 422 PPPADSPATAPGPDDAEG 439
P PA +PG + +G
Sbjct: 1230 PLGKRGPAGSPGSEGRQG 1247
Score = 37.0 bits (84), Expect = 0.052
Identities = 91/398 (22%), Positives = 119/398 (29%), Gaps = 116/398 (29%)
Query: 108 QCGGGSRASSMKVKGHWGSDSSKAK----RRRRCLDPTKAPPDPGGREG-------PPAA 156
+C GG R + H S + + R + +P P PG E PP
Sbjct: 227 ECEGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLE 286
Query: 157 E--EGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVG 214
E GP + +V E LVE P P PA ++ QG P VG
Sbjct: 287 EAAHGPRGLKGEKGEPAVLEPGMLVE--------GPPGPEGPAGLIGPPGIQGNPGP-VG 337
Query: 215 SERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEE-RPGPGPGEVRIAFRISNGREPRA 273
+R P GL + PGP + + FR +G +
Sbjct: 338 DP-------------------GERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKG 378
Query: 274 PDSGL---------------------PSGGGGRPG-CAYPGSPGPGARAKDKITCDLYQL 311
P P G GRPG PGSPG + D
Sbjct: 379 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD--------- 429
Query: 312 ISPSRDALPSNVEFLLARADE----ASEGDSPAPARP--------EDTPPAP-------- 351
+ P P + +A ++G P P + P P
Sbjct: 430 LGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGD 489
Query: 352 ------PPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPP 405
P PP D G G ++ G+ E G G K P P PP
Sbjct: 490 TGAQGLPGPPGED-GERGDDGEIGPRGLPGESGPRGLLGPKG----------PPGIPGPP 538
Query: 406 GQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGTADT 443
G RG DGP P + P PGP +GT T
Sbjct: 539 GV------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 570
Score = 35.4 bits (80), Expect = 0.15
Identities = 75/322 (23%), Positives = 100/322 (31%), Gaps = 51/322 (15%)
Query: 144 PPDPGGREGP--PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVF 201
PP P G GP P +GP V L + + +Q P P
Sbjct: 1092 PPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERG 1151
Query: 202 VSAEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVR 260
E G P + G + G D + F P G R ++ GE
Sbjct: 1152 EKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGE-- 1209
Query: 261 IAFRISNGREPRAPDSGLPSGGGGRPG-------CAYPGSPG----------PGARAKDK 303
EP P S P+G G PG PGS G PGA
Sbjct: 1210 -------DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
Query: 304 ITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPAR-----D 358
T + P+ A + L + P A + PP P PP D
Sbjct: 1263 KTGP----VGPAGPAGKPGPDGLRGLPGSVGQQGRPG-ATGQAGPPGPVGPPGLPGLRGD 1317
Query: 359 CGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPE-EPPPPGQLFFLQNRGPD 417
GA G + G++ G+ G + + P+ P G++ GP
Sbjct: 1318 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP--------GPQGSPGQKGEMGIPGASGPI 1369
Query: 418 GPPEPPPADSPATAPGPDDAEG 439
GP PP PA GP A+G
Sbjct: 1370 GPGGPPGLPGPA---GPKGAKG 1388
Score = 33.9 bits (76), Expect = 0.44
Identities = 108/474 (22%), Positives = 143/474 (30%), Gaps = 99/474 (20%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLL 73
P P G + + P KP PG P H E P + P+ PL
Sbjct: 574 PGPQGAIGPHGEKGPQG--KPGLPGMPGSDGPPGH--PGKEGPPGTKGNQGPSGPQGPLG 629
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRAS--SMKVKGHWGSDSSKA 131
G +G +D +K ++ F + G + + V G G D +
Sbjct: 630 YPGPRGVKG---VDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG 686
Query: 132 KRRRRCLDPTKAPPDPG-----GREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRA-AL 185
+ R PT P PG G+ G P P G L A E+ A L
Sbjct: 687 PKGRT--GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 744
Query: 186 ALQSYPR----PTTPAPVVFVSAEQGGP--AKGVGSERRSGGGDCSRVA---------EA 230
+ +S PR PT P Q GP A G + + GGD +
Sbjct: 745 SGKSGPRGERGPTGPRG-------QRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 797
Query: 231 VAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC-- 288
F + P G K+ PG + F+ G P P P G G G
Sbjct: 798 PNGFPGPKGPPGPPG--KDGLPGHPGQRGEVGFQGKTG-PPGPPGVVGPQGAAGETGPMG 854
Query: 289 --AYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPED 346
+PG PGP P LP E ++GD
Sbjct: 855 ERGHPGPPGP-----------------PGEQGLPGTA------GKEGTKGD--------- 882
Query: 347 TPPAPPPPPARD--CGASGFHVDVVVTGVVDECIFFGKDGTKNVK-------EETVCLTV 397
P PP P +D G GF + + G G +G E +
Sbjct: 883 --PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG 940
Query: 398 SPEEPP-------PPG---QLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGTA 441
P PP PPG + +GP GP P PGP G A
Sbjct: 941 GPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 994
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 52.0 bits (123), Expect = 2e-06
Identities = 90/367 (24%), Positives = 123/367 (33%), Gaps = 57/367 (15%)
Query: 112 GSRASSMK--VKGHWGSDSSKAKRRRRCLDPTKAP---PDPGGREGPPAAEEGPASAGED 166
G R ++ K KG G D R L + P P P G GPP + P G+
Sbjct: 743 GPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQR 802
Query: 167 VDL-----------LSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGS 215
++ V + + + +P P P EQG P G
Sbjct: 803 GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP------GEQGLPGTA-GK 855
Query: 216 ERRSG-----GGDCSRVAEAVAHFEAQRDSPPTKG---LRKEERPGPGPGEVRIAFRISN 267
E G G + F +R P T G L+ E P PG +
Sbjct: 856 EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA------GS 909
Query: 268 GREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDA------LPS 321
E A SG P G GRPG P P PGA + + + + RD LP
Sbjct: 910 PGERGAAGSGGPIGPPGRPG---PQGP-PGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 965
Query: 322 NVEFLLARADEASEGDSPAPARP-------EDTPPAPPPP--PARDCGASGFHVDVVVTG 372
++ +G+ P + E PP PP P P GA+G + G
Sbjct: 966 PAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARG 1025
Query: 373 VVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAP 432
G +GT+ + + P P G+ + GP GPP PP PA
Sbjct: 1026 PQGHFGAKGDEGTRGFNGPPGPIGLQGL-PGPSGEKGETGDVGPMGPPGPPGPRGPAGPN 1084
Query: 433 GPDDAEG 439
G D +G
Sbjct: 1085 GADGPQG 1091
Score = 43.1 bits (100), Expect = 7e-04
Identities = 84/318 (26%), Positives = 107/318 (33%), Gaps = 57/318 (17%)
Query: 142 KAPPDPGGREGP--PAAEEGPAS----AGEDVDLLSVAEMVALVEQRAALALQSYPRPTT 195
K P P GR+G P GPA AGED D V + Q+ + P
Sbjct: 946 KGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDP----GQKGTKGNKGEHGPPG 1001
Query: 196 PAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPG 255
P GP VG +G HF A+ D +G R P PG
Sbjct: 1002 PP----------GPIGPVGQPGAAGADGEPGARGPQGHFGAKGD----EGTRGFNGP-PG 1046
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPS 315
P ++ +G + D G P G G PG P P GA + L P
Sbjct: 1047 PIGLQ-GLPGPSGEKGETGDVG-PMGPPGPPGPRGPAGPN-GADGPQGPPGGVGNLGPPG 1103
Query: 316 RDALPSNVE---------FLLARADEASEGDSPAPARPEDTPPAPPPP-----PARDCGA 361
P R + +G+S P P PP P P P + G
Sbjct: 1104 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPGP 1161
Query: 362 SGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPE 421
GF D G E G+DG K + E P +P PG G +GPP
Sbjct: 1162 VGFPGD---PGPPGEGGPRGQDGAKGDRGEDG----EPGQPGSPGPT------GENGPPG 1208
Query: 422 PPPADSPATAPGPDDAEG 439
P PA +PG + +G
Sbjct: 1209 PLGKRGPAGSPGSEGRQG 1226
Score = 35.4 bits (80), Expect = 0.15
Identities = 75/322 (23%), Positives = 100/322 (31%), Gaps = 51/322 (15%)
Query: 144 PPDPGGREGP--PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVF 201
PP P G GP P +GP V L + + +Q P P
Sbjct: 1071 PPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERG 1130
Query: 202 VSAEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVR 260
E G P + G + G D + F P G R ++ GE
Sbjct: 1131 EKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGE-- 1188
Query: 261 IAFRISNGREPRAPDSGLPSGGGGRPG-------CAYPGSPG----------PGARAKDK 303
EP P S P+G G PG PGS G PGA
Sbjct: 1189 -------DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1241
Query: 304 ITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPAR-----D 358
T + P+ A + L + P A + PP P PP D
Sbjct: 1242 KTGP----VGPAGPAGKPGPDGLRGLPGSVGQQGRPG-ATGQAGPPGPVGPPGLPGLRGD 1296
Query: 359 CGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPE-EPPPPGQLFFLQNRGPD 417
GA G + G++ G+ G + + P+ P G++ GP
Sbjct: 1297 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP--------GPQGSPGQKGEMGIPGASGPI 1348
Query: 418 GPPEPPPADSPATAPGPDDAEG 439
GP PP PA GP A+G
Sbjct: 1349 GPGGPPGLPGPA---GPKGAKG 1367
Score = 33.9 bits (76), Expect = 0.44
Identities = 108/474 (22%), Positives = 143/474 (30%), Gaps = 99/474 (20%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLL 73
P P G + + P KP PG P H E P + P+ PL
Sbjct: 553 PGPQGAIGPHGEKGPQG--KPGLPGMPGSDGPPGH--PGKEGPPGTKGNQGPSGPQGPLG 608
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRAS--SMKVKGHWGSDSSKA 131
G +G +D +K ++ F + G + + V G G D +
Sbjct: 609 YPGPRGVKG---VDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG 665
Query: 132 KRRRRCLDPTKAPPDPG-----GREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRA-AL 185
+ R PT P PG G+ G P P G L A E+ A L
Sbjct: 666 PKGRT--GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 723
Query: 186 ALQSYPR----PTTPAPVVFVSAEQGGP--AKGVGSERRSGGGDCSRVA---------EA 230
+ +S PR PT P Q GP A G + + GGD +
Sbjct: 724 SGKSGPRGERGPTGPRG-------QRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 776
Query: 231 VAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC-- 288
F + P G K+ PG + F+ G P P P G G G
Sbjct: 777 PNGFPGPKGPPGPPG--KDGLPGHPGQRGEVGFQGKTG-PPGPPGVVGPQGAAGETGPMG 833
Query: 289 --AYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPED 346
+PG PGP P LP E ++GD
Sbjct: 834 ERGHPGPPGP-----------------PGEQGLPGTA------GKEGTKGD--------- 861
Query: 347 TPPAPPPPPARD--CGASGFHVDVVVTGVVDECIFFGKDGTKNVK-------EETVCLTV 397
P PP P +D G GF + + G G +G E +
Sbjct: 862 --PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG 919
Query: 398 SPEEPP-------PPG---QLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGTA 441
P PP PPG + +GP GP P PGP G A
Sbjct: 920 GPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 973
Score = 33.1 bits (74), Expect = 0.75
Identities = 86/385 (22%), Positives = 113/385 (29%), Gaps = 111/385 (28%)
Query: 108 QCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDV 167
+C GG R + H S + + R P +E A GP +
Sbjct: 227 ECEGGQRERPQNQQPHRAQRSPQQQPSRL--------HRPQNQEPQSQAAHGPRGLKGEK 278
Query: 168 DLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRV 227
+V E LVE P P PA ++ QG P VG
Sbjct: 279 GEPAVLEPGMLVE--------GPPGPEGPAGLIGPPGIQGNPGP-VGDP----------- 318
Query: 228 AEAVAHFEAQRDSPPTKGLRKEE-RPGPGPGEVRIAFRISNGREPRAPDSGL-------- 278
+R P GL + PGP + + FR +G + P
Sbjct: 319 --------GERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAI 370
Query: 279 -------------PSGGGGRPG-CAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVE 324
P G GRPG PGSPG + D + P P +
Sbjct: 371 LQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD---------LGPQGPRGPQGLT 421
Query: 325 FLLARADE----ASEGDSPAPARP--------EDTPPAP--------------PPPPARD 358
+A ++G P P + P P P PP D
Sbjct: 422 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 481
Query: 359 CGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDG 418
G G ++ G+ E G G K P P PPG RG DG
Sbjct: 482 -GERGDDGEIGPRGLPGESGPRGLLGPKG----------PPGIPGPPGV------RGMDG 524
Query: 419 PPEPPPADSPATAPGPDDAEGTADT 443
P P + P PGP +GT T
Sbjct: 525 PQGPKGSLGPQGEPGPPGQQGTPGT 549
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 52.0 bits (123), Expect = 2e-06
Identities = 90/367 (24%), Positives = 123/367 (33%), Gaps = 57/367 (15%)
Query: 112 GSRASSMK--VKGHWGSDSSKAKRRRRCLDPTKAP---PDPGGREGPPAAEEGPASAGED 166
G R ++ K KG G D R L + P P P G GPP + P G+
Sbjct: 850 GPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQR 909
Query: 167 VDL-----------LSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGS 215
++ V + + + +P P P EQG P G
Sbjct: 910 GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP------GEQGLPGTA-GK 962
Query: 216 ERRSG-----GGDCSRVAEAVAHFEAQRDSPPTKG---LRKEERPGPGPGEVRIAFRISN 267
E G G + F +R P T G L+ E P PG +
Sbjct: 963 EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA------GS 1016
Query: 268 GREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDA------LPS 321
E A SG P G GRPG P P PGA + + + + RD LP
Sbjct: 1017 PGERGAAGSGGPIGPPGRPG---PQGP-PGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 1072
Query: 322 NVEFLLARADEASEGDSPAPARP-------EDTPPAPPPP--PARDCGASGFHVDVVVTG 372
++ +G+ P + E PP PP P P GA+G + G
Sbjct: 1073 PAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARG 1132
Query: 373 VVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAP 432
G +GT+ + + P P G+ + GP GPP PP PA
Sbjct: 1133 PQGHFGAKGDEGTRGFNGPPGPIGLQGL-PGPSGEKGETGDVGPMGPPGPPGPRGPAGPN 1191
Query: 433 GPDDAEG 439
G D +G
Sbjct: 1192 GADGPQG 1198
Score = 43.1 bits (100), Expect = 7e-04
Identities = 84/318 (26%), Positives = 107/318 (33%), Gaps = 57/318 (17%)
Query: 142 KAPPDPGGREGP--PAAEEGPAS----AGEDVDLLSVAEMVALVEQRAALALQSYPRPTT 195
K P P GR+G P GPA AGED D V + Q+ + P
Sbjct: 1053 KGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDP----GQKGTKGNKGEHGPPG 1108
Query: 196 PAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPG 255
P GP VG +G HF A+ D +G R P PG
Sbjct: 1109 PP----------GPIGPVGQPGAAGADGEPGARGPQGHFGAKGD----EGTRGFNGP-PG 1153
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPS 315
P ++ +G + D G P G G PG P P GA + L P
Sbjct: 1154 PIGLQ-GLPGPSGEKGETGDVG-PMGPPGPPGPRGPAGPN-GADGPQGPPGGVGNLGPPG 1210
Query: 316 RDALPSNVE---------FLLARADEASEGDSPAPARPEDTPPAPPPP-----PARDCGA 361
P R + +G+S P P PP P P P + G
Sbjct: 1211 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPGP 1268
Query: 362 SGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPE 421
GF D G E G+DG K + E P +P PG G +GPP
Sbjct: 1269 VGFPGD---PGPPGEGGPRGQDGAKGDRGEDG----EPGQPGSPGPT------GENGPPG 1315
Query: 422 PPPADSPATAPGPDDAEG 439
P PA +PG + +G
Sbjct: 1316 PLGKRGPAGSPGSEGRQG 1333
Score = 35.4 bits (80), Expect = 0.15
Identities = 75/322 (23%), Positives = 100/322 (31%), Gaps = 51/322 (15%)
Query: 144 PPDPGGREGP--PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVF 201
PP P G GP P +GP V L + + +Q P P
Sbjct: 1178 PPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERG 1237
Query: 202 VSAEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVR 260
E G P + G + G D + F P G R ++ GE
Sbjct: 1238 EKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGE-- 1295
Query: 261 IAFRISNGREPRAPDSGLPSGGGGRPG-------CAYPGSPG----------PGARAKDK 303
EP P S P+G G PG PGS G PGA
Sbjct: 1296 -------DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1348
Query: 304 ITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPAR-----D 358
T + P+ A + L + P A + PP P PP D
Sbjct: 1349 KTGP----VGPAGPAGKPGPDGLRGLPGSVGQQGRPG-ATGQAGPPGPVGPPGLPGLRGD 1403
Query: 359 CGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPE-EPPPPGQLFFLQNRGPD 417
GA G + G++ G+ G + + P+ P G++ GP
Sbjct: 1404 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP--------GPQGSPGQKGEMGIPGASGPI 1455
Query: 418 GPPEPPPADSPATAPGPDDAEG 439
GP PP PA GP A+G
Sbjct: 1456 GPGGPPGLPGPA---GPKGAKG 1474
Score = 33.9 bits (76), Expect = 0.44
Identities = 108/474 (22%), Positives = 143/474 (30%), Gaps = 99/474 (20%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLL 73
P P G + + P KP PG P H E P + P+ PL
Sbjct: 660 PGPQGAIGPHGEKGPQG--KPGLPGMPGSDGPPGH--PGKEGPPGTKGNQGPSGPQGPLG 715
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRAS--SMKVKGHWGSDSSKA 131
G +G +D +K ++ F + G + + V G G D +
Sbjct: 716 YPGPRGVKG---VDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG 772
Query: 132 KRRRRCLDPTKAPPDPG-----GREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRA-AL 185
+ R PT P PG G+ G P P G L A E+ A L
Sbjct: 773 PKGRT--GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 830
Query: 186 ALQSYPR----PTTPAPVVFVSAEQGGP--AKGVGSERRSGGGDCSRVA---------EA 230
+ +S PR PT P Q GP A G + + GGD +
Sbjct: 831 SGKSGPRGERGPTGPRG-------QRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 883
Query: 231 VAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC-- 288
F + P G K+ PG + F+ G P P P G G G
Sbjct: 884 PNGFPGPKGPPGPPG--KDGLPGHPGQRGEVGFQGKTG-PPGPPGVVGPQGAAGETGPMG 940
Query: 289 --AYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPED 346
+PG PGP P LP E ++GD
Sbjct: 941 ERGHPGPPGP-----------------PGEQGLPGTA------GKEGTKGD--------- 968
Query: 347 TPPAPPPPPARD--CGASGFHVDVVVTGVVDECIFFGKDGTKNVK-------EETVCLTV 397
P PP P +D G GF + + G G +G E +
Sbjct: 969 --PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG 1026
Query: 398 SPEEPP-------PPG---QLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGTA 441
P PP PPG + +GP GP P PGP G A
Sbjct: 1027 GPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 1080
Score = 32.7 bits (73), Expect = 0.99
Identities = 68/246 (27%), Positives = 86/246 (34%), Gaps = 68/246 (27%)
Query: 219 SGGGD-----CSRVAEAVAHFEAQRDS--PPTKGLRKEERPGP--GPGEVRIAFRISN-- 267
SGGGD ++ A+A A + R + P + RPGP PG + +
Sbjct: 458 SGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 517
Query: 268 GREPRAPDSGL--PSGGGGRPGCA-------YPGSPG-PGARAKDKITCDLYQLISPSRD 317
+ PR P GL P G GR G A PG PG G R D +
Sbjct: 518 PQGPRGPQ-GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLP------------ 564
Query: 318 ALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDEC 377
LP ++ GD+ A P PP D G G ++ G+ E
Sbjct: 565 GLPG---------EKGHRGDTGAQGLPG--------PPGED-GERGDDGEIGPRGLPGES 606
Query: 378 IFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDA 437
G G K P P PPG RG DGP P + P PGP
Sbjct: 607 GPRGLLGPKG----------PPGIPGPPGV------RGMDGPQGPKGSLGPQGEPGPPGQ 650
Query: 438 EGTADT 443
+GT T
Sbjct: 651 QGTPGT 656
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 49.3 bits (116), Expect = 1e-05
Identities = 78/320 (24%), Positives = 110/320 (34%), Gaps = 54/320 (16%)
Query: 139 DPTKAPPDPGGREGP---PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTT 195
D T P + E P + EE P+S +DV A P P
Sbjct: 254 DLTCTPEEEENEEKPLLEVSPEERPSSGQQDV------------------APDRGPEPGP 295
Query: 196 PAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPG 255
PAP+ P G RR+ S + +V + P ++ E
Sbjct: 296 PAPL---------PPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPES 346
Query: 256 PGEVRIAFRISNGREPRAPDSGLPS---GGGGRPGCAYPGSP-GPGARAKDKITCDLYQL 311
+R+ EP +P G P+ GG + G A P P P +++ C +
Sbjct: 347 APTLRV--------EPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDV 398
Query: 312 ISPSRDALPSN----VEFLLARADEA-SEGDSPAPARPEDTPPAPPPPPARDCGASGFHV 366
SP A+P E A EA S D P + P++ P PP P + G G
Sbjct: 399 ASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAP 458
Query: 367 DVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPP-- 424
+ + G + + E + SP P P L +GP PP
Sbjct: 459 EPEREAETEPERGAGTEPERIGTEPSTAPAPSP--PAPKSCLKHRPAAASEGPAASPPLA 516
Query: 425 -ADSPATAPGPD--DAEGTA 441
A+SP PGP DAE A
Sbjct: 517 AAESPPVEPGPGSLDAEAAA 536
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 48.9 bits (115), Expect = 1e-05
Identities = 77/362 (21%), Positives = 119/362 (32%), Gaps = 44/362 (12%)
Query: 24 QPRPPSAALKPSA---CPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAA-- 78
+P PP + P A CP P AE PA + + PA +PA++P P + AA
Sbjct: 2390 RPAPPQPSPAPPAFTSCPAPEPFAEL---PAPATSLAPAPLITMPATRPKPKKARAAEES 2446
Query: 79 --------GDEGRVL--LDTWYVIKPGNTKEKVAFFVAHQ--CGGGSRASSMKVKGHW-- 124
G+E +L LD V P + K K A + GG S+ G +
Sbjct: 2447 GAKGPRRPGEEAELLVKLDHEGVTSPKSKKAKEALLLREDPGAGGWQEPKSLLSLGSYPP 2506
Query: 125 --GSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQR 182
GS KA P P +G A E GP ED + +
Sbjct: 2507 AAGSSEPKA-------------PWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDG 2553
Query: 183 AALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPP 242
A + S + + S+ G +G ++G G C + ++ SP
Sbjct: 2554 AEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPA 2613
Query: 243 TKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAK- 301
+ + S+ + S S + S + +
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673
Query: 302 -DKITCDLYQLISPSRDALPSNVEFLLARADEAS-----EGDSPAPARPEDTPPAPPPPP 355
+ +C +P+ A PS L +A + + SP P P APPP P
Sbjct: 2674 DEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQP 2733
Query: 356 AR 357
+
Sbjct: 2734 TQ 2735
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 47.8 bits (112), Expect = 3e-05
Identities = 104/418 (24%), Positives = 136/418 (32%), Gaps = 85/418 (20%)
Query: 25 PRPPSAALKPSACPEPGGGAEPDHGPAHSEN-------TPPALATEVP------ASQPAP 71
P PP P+ PGGG GP PPA P + P P
Sbjct: 87 PEPP-----PAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVP 141
Query: 72 LLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKA 131
+A AAG E G K +A + G G
Sbjct: 142 AAAAVAAGPEPA---------PAGPAKPAGPAALAARAGPGPGPG--------------- 177
Query: 132 KRRRRCLDPTKAP-PDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSY 190
P P P PG GP AA+ SA + A V+LV A AL
Sbjct: 178 --------PGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPA-ALLPL 228
Query: 191 PRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEE 250
P+P P V+ Q P G + + A A A A PP
Sbjct: 229 PKPAAPGTVI-----QTPPFVGAAAPP-APAAPSPPAAPAPAAPAAAPPPPPPAPATLAR 282
Query: 251 RPGPGPGEVRIAFRI----------SNGREPR-APDSGLPSGGGGRPG-CAYPGSPGPGA 298
PG G A + S G P AP +G P+G G+PG A +P PG
Sbjct: 283 PPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGV 342
Query: 299 RAKDKITCDLYQLISPSRDALPSNVEFLLARA---DEASEGDSPAPARPEDTPPAPPPPP 355
+A+ + Q P+ L ++ A + +G P+PA PPAP P
Sbjct: 343 KAESPKR--VVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAV--PPPAPGTPT 398
Query: 356 ARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQN 413
GA+G VT + G + TV ++P P PP +QN
Sbjct: 399 GLPKGAAG-----AVTQSLSRTPTATTSGIRATLTPTV---LAPRLPQPPQNPTNIQN 448
Score = 31.6 bits (70), Expect = 2.2
Identities = 70/298 (23%), Positives = 91/298 (30%), Gaps = 57/298 (19%)
Query: 166 DVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCS 225
+VD V+++V +E + A + + P V +A G V S +G
Sbjct: 16 EVDEKVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAAAA-GALGNHVVSGSPAGAAGAG 74
Query: 226 RVAEAVAHFEAQRDSPPTKGLRK----EERPGPGPGEVRIAFRISNGREPRAPDSGLPSG 281
A A A + PP R +RPGP + R P P P
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGP-----------PSPRRPLVPAGPAPPA 123
Query: 282 GGGRP---GCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDS 338
RP G A +P P A A +P+ A P+ L ARA G
Sbjct: 124 AKLRPPPEGSAGSCAPVPAAAA-----VAAGPEPAPAGPAKPAGPAALAARA---GPGPG 175
Query: 339 PAPARPEDTPPAPPPPPARDCGA-------------SGFHVDVVVTGVVDECIFFGKDGT 385
P P P P P P + G + H +V+
Sbjct: 176 PGPG------PGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLP 229
Query: 386 KNVKEETVCLT---VSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGT 440
K TV T V PP P P P P PA A P P A T
Sbjct: 230 KPAAPGTVIQTPPFVGAAAPPAPA--------APSPPAAPAPAAPAAAPPPPPPAPAT 279
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 47.8 bits (112), Expect = 3e-05
Identities = 87/340 (25%), Positives = 109/340 (32%), Gaps = 76/340 (22%)
Query: 122 GHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQ 181
GH+G+ + L + P GR GPP + GP D + + +
Sbjct: 1097 GHFGASGEQG------LPGIQGPRGSPGRPGPPGSS-GPPGCPGDHGMPGLRGQPGEMGD 1149
Query: 182 RAALALQSYPRPTTPAPVVFVSAEQG-----GPAKGVGSERRSGGGDCSRVAEA-VAHFE 235
LQ P P + S G G G++ SG D + +
Sbjct: 1150 PGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLK 1209
Query: 236 AQRDSPPTKGLR------KEERPGPGPGEVRIAFRISNGREPR-APDSGLPSGGGGRPGC 288
+R P + G+ K+ PGP + GR P+ PD G P G G PG
Sbjct: 1210 GERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPG-PPGDQGPPGP 1268
Query: 289 AYP-GSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDT 347
P G+PGP LP +V+ L GD P P
Sbjct: 1269 DGPRGAPGP--------------------PGLPGSVDLL-----RGEPGDCGLPGPPG-- 1301
Query: 348 PPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQ 407
PP PP PP G GF C GKDG K P P G
Sbjct: 1302 PPGPPGPP----GYKGF----------PGCD--GKDGQKG----------PVGFPGPQGP 1335
Query: 408 LFFLQNRGPDGPPEPPPADSPATAPGPDDAEG-TADTSLC 446
F G G P PP P PGP G AD C
Sbjct: 1336 HGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDC 1375
Score = 40.0 bits (92), Expect = 0.006
Identities = 86/347 (24%), Positives = 110/347 (31%), Gaps = 87/347 (25%)
Query: 142 KAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYP----RPTTPA 197
+ P G+ GPP P S G R + P P +P
Sbjct: 1014 RGEPGEKGQPGPPGPPGPPGSTG----------------LRGFIGFPGLPGDQGEPGSPG 1057
Query: 198 PVVFVSAEQGGPAKGVGSERRSGGGDCSRVAE-----AVAHFEAQRDS--PPTKGLRKEE 250
P F + KG + S G E HF A + P +G R
Sbjct: 1058 PPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSP 1117
Query: 251 -RPGPGPGEVRIAFRISNGREPRAPDSGLPS-----GGGGRPGC----AYPGSPGP---- 296
RPGP PG S+G D G+P G G PG PG PGP
Sbjct: 1118 GRPGP-PG--------SSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIK 1168
Query: 297 ------------GARAKD--KITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPA 342
G + + K L+ + P +P R D S G SP
Sbjct: 1169 GPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPG---LKGERGDPGSPGISPPGP 1225
Query: 343 RPEDTPPAPPPP--PARDCGASG-FHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSP 399
R + PP PP P GA+G D+ G + G DG + +P
Sbjct: 1226 RGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRG----------AP 1275
Query: 400 EEPPPPGQLFFLQNR-------GPDGPPEPPPADSPATAPGPDDAEG 439
P PG + L+ GP GPP PP PG D +G
Sbjct: 1276 GPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDG 1322
Score = 34.7 bits (78), Expect = 0.26
Identities = 46/187 (24%), Positives = 58/187 (31%), Gaps = 50/187 (26%)
Query: 261 IAFRISNGREPRAPDSGLPSGGGGRPG-------CAYPGSPGPGARAKDKITCDLYQLIS 313
+ R+ + R PD P G G+PG G PGP +D +
Sbjct: 560 VVSRVKGHKGERGPDG--PPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDA---------T 608
Query: 314 PSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGV 373
P P + P A P P P P + G G V G
Sbjct: 609 PGGKGFPGPL-------------GPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRG- 654
Query: 374 VDECIFFGKDGTKNVKEETV-CLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAP 432
DG K K +T+ C P PPG DGPP P P AP
Sbjct: 655 --------PDGLKGQKGDTISCNVTYPGRHGPPGF---------DGPPGPKGFPGPQGAP 697
Query: 433 GPDDAEG 439
G ++G
Sbjct: 698 GLSGSDG 704
Score = 32.0 bits (71), Expect = 1.7
Identities = 62/265 (23%), Positives = 89/265 (33%), Gaps = 44/265 (16%)
Query: 208 GPAKGVGSERRSGG-GDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRIS 266
GP +G G G+ + AV + R P GL G G
Sbjct: 158 GPGGPLGHPGEKGEKGNSVFILGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGY----- 212
Query: 267 NGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFL 326
P P P G GRPG G+PG G + + ++ Q SP L +F
Sbjct: 213 ----PGEPGLVGPPGQPGRPGLK--GNPGVGVKGQMGDPGEVGQQGSPGPTLLVEPPDFC 266
Query: 327 LARADEA---------------SEGDSPAPARPEDTPPAPPPPPAR--DCGASGFHVDVV 369
L + ++ +G+S A+ E P P P G+ GF
Sbjct: 267 LYKGEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKG 326
Query: 370 VTGVVDECIFFGKDGTKN-------------VKEETVCLTVSPEEPPPPGQLFFLQNRGP 416
G+V + FG G K + + L P +P PG+ + GP
Sbjct: 327 ELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386
Query: 417 DGPPE--PPPADSPATAPGPDDAEG 439
GPP P ++ A GP +G
Sbjct: 387 PGPPGLLGRPGEACAGMIGPPGPQG 411
Score = 32.0 bits (71), Expect = 1.7
Identities = 78/307 (25%), Positives = 106/307 (34%), Gaps = 68/307 (22%)
Query: 145 PDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRP-----TTPAPV 199
P P G G + P GE + L+ + L+ + + +P P T P P+
Sbjct: 307 PGPRGDPGSYGSPGFPGLKGE-LGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPL 365
Query: 200 VFVSAEQGGPAK-GVGSERRSGG--GDCSRVAEAVAHFEAQRDSPPTKGLRKEERPG-PG 255
+ G P + G + G G R EA A P +G PG PG
Sbjct: 366 KGPPGDPGFPGRYGETGDVGPPGPPGLLGRPGEACA---GMIGPPGPQGF-----PGLPG 417
Query: 256 -PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC-AYPGSPG-PGARAKDKITCDLYQLI 312
PGE I P PDS G G+PG PG+PG G I C +
Sbjct: 418 LPGEAGI---------PGRPDSA--PGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVG--- 463
Query: 313 SPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTG 372
+P + V R + +G+ A E P PP PP G G D+ + G
Sbjct: 464 NPGPQGIKGKVGPPGGRGPKGEKGNEGLCAC-EPGPMGPPGPPGLP-GRQGSKGDLGLPG 521
Query: 373 VVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAP 432
+ GTK +P PPG +GPP P + P
Sbjct: 522 WL---------GTKG-------------DPGPPGA---------EGPPGLPGKHGASGPP 550
Query: 433 GPDDAEG 439
G A+G
Sbjct: 551 GNKGAKG 557
Score = 29.6 bits (65), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 413 NRGPDGPPEPPPADSPATAPGPDDAEG 439
+RGP GPP P P APGP G
Sbjct: 63 SRGPPGPPGPQGPIGPLGAPGPIGLSG 89
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 46.6 bits (109), Expect = 7e-05
Identities = 74/306 (24%), Positives = 106/306 (34%), Gaps = 58/306 (18%)
Query: 139 DPTKAPPDPGGRE-------GPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYP 191
D + A + G +E P A +E PA+AG S AE E AA A ++
Sbjct: 44 DASPAAAESGAKEELQANGSAPAADKEEPAAAGSGAASPSAAEKG---EPAAAAAPEAGA 100
Query: 192 RPTTP-APVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLR--- 247
P AP +AE G P G + S AE A ++P K R
Sbjct: 101 SPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSF 160
Query: 248 KEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCD 307
K+ G +F+ + ++ P+ GG+ A G A A +
Sbjct: 161 KKSFKLSG-----FSFKKNKKEAGEGGEAEAPAAEGGKDEAA----GGAAAAAAEAGAAS 211
Query: 308 LYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVD 367
Q +P +A A +E + G P A+P++ AP PPA D
Sbjct: 212 GEQAAAPGEEA---------AAGEEGAAGGDPQEAKPQEAAVAPEKPPASD--------- 253
Query: 368 VVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP--EPPPA 425
T +E + K E + + E P GP PP E PA
Sbjct: 254 --ETKAAEE-----PSKVEEKKAEEAGASAAACEAPSAA--------GPGAPPEQEAAPA 298
Query: 426 DSPATA 431
+ PA A
Sbjct: 299 EEPAAA 304
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 45.8 bits (107), Expect = 1e-04
Identities = 89/357 (24%), Positives = 112/357 (31%), Gaps = 88/357 (24%)
Query: 142 KAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVF 201
+ P P G +G A P +AG A P P+ P V
Sbjct: 894 QGPTGPPGAKGQEGAHGAPGAAGNP----------------GAPGHVGAPGPSGPPGSVG 937
Query: 202 VSAEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPG------- 253
+G P K G E+ + G + S P G K+ PG
Sbjct: 938 APGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGL 997
Query: 254 PGP-------GEVRIAFRISNGREPRAPDSGLPS-----GGGGRPGCAYPGSPGPGARAK 301
PGP G+VR + + G + D G P G G PG G PGP
Sbjct: 998 PGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPG 1057
Query: 302 DKITCDLYQLIS-------PSRDALPSN-----VEFLLARADEASEGDSPAPARP--EDT 347
DK + L RD P N + S GD A+ D
Sbjct: 1058 DKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDC 1117
Query: 348 PPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQ 407
PP PP P G GF D V G G++GT+ K E P P PPG
Sbjct: 1118 PPGPPGLP----GLPGFKGDKGVPGKP------GREGTEGKKGE----AGPPGLPGPPGI 1163
Query: 408 LFFLQNR------------------------GPDGPPEPPPADSPATAPGPDDAEGT 440
++ GP G P PP AD A A GP +G+
Sbjct: 1164 AGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGS 1220
Score = 44.3 bits (103), Expect = 3e-04
Identities = 83/326 (25%), Positives = 110/326 (33%), Gaps = 48/326 (14%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
P P G GPP P S GE + + + E + L + P P
Sbjct: 1316 PQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSP-GLPGFLGPRGPPGE---P 1371
Query: 204 AEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIA 262
E+G P K GV + G F+ +R P KG + PG+ I
Sbjct: 1372 GEKGVPGKEGVPGKPGEPG------------FKGERGDPGIKGDKGPPGGKGQPGDPGIP 1419
Query: 263 FRISNGREPRAPDSGLPSGGG--GRPGCAYPGSPG-PGARAKDKITCDLYQLISPSRDA- 318
G GLP G G PG PG PG PG R + L +LI
Sbjct: 1420 GH--KGHTGLMGPQGLPGENGPVGPPGP--PGQPGFPGLRGESPSMETLRRLIQEELGKQ 1475
Query: 319 LPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARD-----CGASGFHVDVVVTGV 373
L + + +LLA+ PA + P PP PP +D G G G+
Sbjct: 1476 LETRLAYLLAQMP-------PAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGL 1528
Query: 374 VDECIFFGKDGTKNVKEETVCLTVS-------PEEPPPPGQLFFLQNRGPDGPPEPPPAD 426
G G + K + V P P PG+ + ++ G G P P
Sbjct: 1529 EGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKD-GLPGIPGPQGET 1587
Query: 427 SPA---TAPGPDDAEGTADTSLCRLY 449
PA PGP G D S C +
Sbjct: 1588 GPAGHPGLPGPPGPPGQCDPSQCAYF 1613
Score = 39.7 bits (91), Expect = 0.008
Identities = 82/331 (24%), Positives = 110/331 (33%), Gaps = 41/331 (12%)
Query: 16 PFGTYSQNQPR-PPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEV-PASQPAPLL 73
P G PR PP P + EPG P + EN P L + P P
Sbjct: 1313 PTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPG 1372
Query: 74 SAAAAGDEGRVLLDTWYVIK-----PGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDS 128
G EG K PG +K GG + + GH G
Sbjct: 1373 EKGVPGKEGVPGKPGEPGFKGERGDPGIKGDK------GPPGGKGQPGDPGIPGHKGHTG 1426
Query: 129 SKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQ 188
+ + PP P G+ G P G + + E + L E+ +E R A L
Sbjct: 1427 LMGPQGLPGENGPVGPPGPPGQPGFPGL-RGESPSMETLRRLIQEELGKQLETRLAYLLA 1485
Query: 189 SYP---------RPTTPAPVVFVSAEQGGPAKG--VGSERRSGGGDCSRVAEAV---AHF 234
P RP P P + G P + +G R G G + +
Sbjct: 1486 QMPPAYMKSSQGRPGPPGP----PGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGER 1541
Query: 235 EAQRD-SPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGS 293
A+ D P GLR E P PG+ +G P P +G G PG PG
Sbjct: 1542 GAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGL-PGIPGPQGETGPAGHPG--LPGP 1598
Query: 294 PGPGARAKDKITCDLYQLISPSRDALPSNVE 324
PGP + D C + ++ A P NV+
Sbjct: 1599 PGPPGQC-DPSQCAYFASLA----ARPGNVK 1624
Score = 36.6 bits (83), Expect = 0.068
Identities = 59/213 (27%), Positives = 71/213 (33%), Gaps = 46/213 (21%)
Query: 252 PGPGPGEVRI----AFRISNGREPRAPDSGLPSGGGGRPG-CAYPGSPGP-GARAKDKIT 305
PGP PG V R G + GL G G+PG G PGP G
Sbjct: 577 PGP-PGRVGAPGLQGERGEKGTRGEKGERGL-DGFPGKPGDTGQQGRPGPSGVAGPQGEK 634
Query: 306 CDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDC------ 359
D+ P +P +V E +G+ AP P AP PP AR
Sbjct: 635 GDVGPAGPPG---VPGSVV-----QQEGLKGEQGAPG-PRGHQGAPGPPGARGPIGPEGR 685
Query: 360 -------GASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPP------PG 406
G G D+ G+ G G V P P P PG
Sbjct: 686 DGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGV----------PGPPGPGGSPGLPG 735
Query: 407 QLFFLQNRGPDGPPEPPPADSPATAPGPDDAEG 439
++ F GP GP PP D P PGP +G
Sbjct: 736 EIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKG 768
Score = 35.4 bits (80), Expect = 0.15
Identities = 86/375 (22%), Positives = 112/375 (29%), Gaps = 94/375 (25%)
Query: 108 QCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDV 167
QC G R + G GS S+ DP P G GPP + P S G
Sbjct: 1021 QCVKGDRGAP----GIPGSPGSRG-------DPGIGVAGPPGPSGPPGDKGSPGSRG--- 1066
Query: 168 DLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQG--GPAKGVGSERRSGGGDCS 225
L +P P PA G GP G GD +
Sbjct: 1067 -------------------LPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDIN 1107
Query: 226 RVAEAVAH--------------FEAQRDSPP------TKGLRKEERPGPGPGEVRIAFRI 265
+A+ V + F+ + P T+G + E P PG IA
Sbjct: 1108 LLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQ 1167
Query: 266 SNGREPRAPDSGLPSGGGGRPGC----AYPGSPGP-------GARAKDKITCDLYQLISP 314
+ E A G G PG PG+PGP GA I SP
Sbjct: 1168 GSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQG------SP 1221
Query: 315 SRDALPSNVEFLLARADEASEGDSPAPARP-------EDTPPAPPPPPARDCGASGFHVD 367
++ P +G S P P D P PP P + G G
Sbjct: 1222 GKEGPPG------------PQGPSGLPGIPGEEGKEGRDGKPGPPGEPGK-AGEPGLPGP 1268
Query: 368 VVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEE--PPPPGQLFFLQNRGPDGPPEPPPA 425
G G G + E+ + + +E P G +GP GP PP
Sbjct: 1269 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGK 1328
Query: 426 DSPATAPGPDDAEGT 440
+ +PG GT
Sbjct: 1329 NGSPGSPGEPGPSGT 1343
Score = 33.9 bits (76), Expect = 0.44
Identities = 49/188 (26%), Positives = 55/188 (29%), Gaps = 35/188 (18%)
Query: 252 PGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQL 311
PGP PG R + G + GLP G R PG PGP R
Sbjct: 538 PGP-PG--RDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRV----------- 583
Query: 312 ISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVT 371
L R ++ G P +P DT P P+ G G DV
Sbjct: 584 ---GAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDV--- 637
Query: 372 GVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATA 431
G G V V E PG RG G P PP A P
Sbjct: 638 ---------GPAGPPGVPGSVVQQEGLKGEQGAPGP------RGHQGAPGPPGARGPIGP 682
Query: 432 PGPDDAEG 439
G D G
Sbjct: 683 EGRDGPPG 690
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 381 GKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGT 440
G+DG+K ++ E L EP PG++ RGP GPP P APG G
Sbjct: 542 GRDGSKGMRGEPGELG----EPGLPGEVGM---RGPQGPPGLPGPPGRVGAPGLQGERGE 594
Query: 441 ADT 443
T
Sbjct: 595 KGT 597
Score = 30.8 bits (68), Expect = 3.7
Identities = 65/268 (24%), Positives = 87/268 (32%), Gaps = 58/268 (21%)
Query: 142 KAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYP---------- 191
+ P P G GPP P GE + + E + L +P
Sbjct: 568 RGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGE-------KGERGLDGFPGKPGDTGQQG 620
Query: 192 RPTTPAPVVFVSAEQG-----GPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKG- 245
RP P+ V E+G GP GS + G + A + P +G
Sbjct: 621 RP-GPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGP 679
Query: 246 LRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKIT 305
+ E R GP PG + + + P P G G PG PG PGPG
Sbjct: 680 IGPEGRDGP-PGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPG--VPGPPGPGG------- 729
Query: 306 CDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARP--EDTPPAPPPPPAR-----D 358
SP LP + F + P P P +D P PP PP +
Sbjct: 730 -------SP---GLPGEIGF-------PGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGE 772
Query: 359 CGASGFHVDVVVTGVVDECIFFGKDGTK 386
G G + G + E G+ G K
Sbjct: 773 RGEDGLPGKPGLRGEIGEQGLAGRPGEK 800
Score = 30.4 bits (67), Expect = 4.9
Identities = 46/165 (27%), Positives = 55/165 (33%), Gaps = 47/165 (28%)
Query: 281 GGGGRPGC-AYPGSPGP-GARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDS 338
G G PG + G+PGP GAR I P P ++ L + +GD
Sbjct: 657 GEQGAPGPRGHQGAPGPPGARGP----------IGPEGRDGPPGLQGLRGK-----KGDM 701
Query: 339 PAPARPE----DTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVC 394
P P PP PP P G G G+ E F GK G
Sbjct: 702 GPPGIPGLLGLQGPPGPPGVPGPP-GPGGS------PGLPGEIGFPGKPGP--------- 745
Query: 395 LTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEG 439
P PPG+ GP+GPP PP G D G
Sbjct: 746 ----PGPTGPPGK------DGPNGPPGPPGTKGEPGERGEDGLPG 780
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 45.4 bits (106), Expect = 1e-04
Identities = 82/320 (25%), Positives = 103/320 (32%), Gaps = 95/320 (29%)
Query: 142 KAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVF 201
K P P G GPP + P S GE+ +V + P P
Sbjct: 815 KGEPGPRGLVGPPGSRGNPGSRGENGPTGAVG----------------FAGPQGPDGQPG 858
Query: 202 VSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGP-GPGEVR 260
V E G P + GD SP +GL PGP GP V
Sbjct: 859 VKGEPGEPGQK---------GDAG--------------SPGPQGLAGS--PGPHGPNGVP 893
Query: 261 IAFRISNGREPRAPD--SGLPSGGG--GRPGCAYPGSPGPGARAKDKITCDLYQLISPSR 316
+ GR + P +G P G G PG A G+PGP L P +
Sbjct: 894 ---GLKGGRGTQGPPGATGFPGSAGRVGPPGPA--GAPGPAG-----------PLGEPGK 937
Query: 317 DALPSNVEFLLARADEASEG--DSPAPARP-----------EDTPPAPPPPPARDCGASG 363
+ P R D S G PA P ED P P PP G +G
Sbjct: 938 EGPPG------LRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPG-PAGTTG 990
Query: 364 FHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPP 423
V + G E G G +P + P G ++GP GP PP
Sbjct: 991 QRGIVGMPGQRGERGMPGLPGPAG----------TPGKVGPTGAT---GDKGPPGPVGPP 1037
Query: 424 PADSPATAPGPDDAEGTADT 443
++ P PGP+ G T
Sbjct: 1038 GSNGPVGEPGPEGPAGNDGT 1057
Score = 37.0 bits (84), Expect = 0.052
Identities = 80/347 (23%), Positives = 114/347 (32%), Gaps = 36/347 (10%)
Query: 110 GGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDL 169
G S +G G R + +D P G GPP P+ G D
Sbjct: 132 GPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGH---PSHPGPDGLS 188
Query: 170 LSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGG-------G 222
+ +A +++++ L Q P + PV GP G + + GG G
Sbjct: 189 RPFSAQMAGLDEKSGLGSQVGLMPGSVGPV--------GPRGPQGLQGQQGGAGPTGPPG 240
Query: 223 DCSRVAEAVAHFEAQRDSPPTK-GLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSG 281
+ + PP K G E PGEV A P AP GLP
Sbjct: 241 EPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAP--GLPGL 298
Query: 282 GGGRPGCAYPGSPG----PGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGD 337
G R G G PG++ + T + + +P L + G
Sbjct: 299 KGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGA 358
Query: 338 SPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEET--VCL 395
P +P P P G+SGF + + G G +G + + ET
Sbjct: 359 HGMPGKPGPMGPLGIP------GSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGP 412
Query: 396 TVSPEEPPPPGQLFFLQNRGPDGPPE---PPPADSPATAPGPDDAEG 439
SP P G +GP G P PP + P +PGP + G
Sbjct: 413 VGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTG 459
Score = 36.6 bits (83), Expect = 0.068
Identities = 88/314 (28%), Positives = 107/314 (34%), Gaps = 49/314 (15%)
Query: 142 KAPPDPGGREGP--PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPT-TPAP 198
K P P G +GP P EEG D + V +R A + +P P P
Sbjct: 482 KGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVG---ERGAPGNRGFPGSDGLPGP 538
Query: 199 VVFVSAEQG--GPAKGVGSERRSGG-GDCSRVAE-AVAHFEAQRDSPPTKGLRKEERPGP 254
QG GP VGS G GD R E + +P +G + P
Sbjct: 539 ----KGAQGERGP---VGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLG 591
Query: 255 GPGEV-RIAFRISNGREPRAPDSGLP-----SGGGGRPGCA-YPGSPGP-GARAKDKITC 306
PGE R S G + GLP SG G+PG A G PG GA KD
Sbjct: 592 APGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGE-- 649
Query: 307 DLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHV 366
+ PS P + A E E P P + P P PP G G
Sbjct: 650 -----VGPSGPVGPPGL------AGERGEQGPPGPTGFQGLPGPPGPP-----GEGGKPG 693
Query: 367 DVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP-EPPPA 425
D V G G G + E P PG+ GPDGP P P+
Sbjct: 694 DQGVPGDPGAVGPLGPRGERGNPGERG----EPGITGLPGEKGMAGGHGPDGPKGSPGPS 749
Query: 426 DSPATAPGPDDAEG 439
+P GP +G
Sbjct: 750 GTPGDT-GPPGLQG 762
Score = 32.7 bits (73), Expect = 0.99
Identities = 69/272 (25%), Positives = 94/272 (34%), Gaps = 52/272 (19%)
Query: 191 PRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSP-------PT 243
P T P + + E+G G + GG + AE A + R P P
Sbjct: 752 PGDTGPPGLQGMPGERG--IAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPA 809
Query: 244 KGLRKEERPGP----GPGEVR--IAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPG 297
++ PGP GP R R NG +G P G G+PG G PG
Sbjct: 810 GPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAG-PQGPDGQPGVK--GEPGEP 866
Query: 298 ARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPAR 357
+ D + L P+ V L + ++G A P PP PA
Sbjct: 867 GQKGDAGSPGPQGLAGSPGPHGPNGVPGL--KGGRGTQGPPGATGFPGSAGRVGPPGPA- 923
Query: 358 DCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPD 417
GA G G + E GK+G ++ + PG + +RGP
Sbjct: 924 --GAPG------PAGPLGEP---GKEGPPGLRGD-------------PGSHGRVGDRGPA 959
Query: 418 GPPEPP-----PADSPATAPGPDDAEGTADTS 444
GPP P P + PGPD G A T+
Sbjct: 960 GPPGGPGDKGDPGEDGQ--PGPDGPPGPAGTT 989
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 45.1 bits (105), Expect = 2e-04
Identities = 87/321 (27%), Positives = 110/321 (34%), Gaps = 83/321 (25%)
Query: 143 APPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPA--PVV 200
+PPDP RE G L S + + A +L PT P P++
Sbjct: 1411 SPPDPARRE-----------LGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLL 1459
Query: 201 F-VSAEQGGPAKGVGSERRSGGGD-CSRVAEAVAHFE-AQRDSPPTKGLRKEERPGPG-- 255
+ E P GV RS + R+ V E Q +P T G GPG
Sbjct: 1460 LQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTSGRGPPSEDGPGVP 1519
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPS 315
P R + P +P S S G P P P P +D + + P
Sbjct: 1520 PPSPRRSV-------PPSPTSPRASEENGLPLLVLP-PPAPSVDVED----GEFLFVEP- 1566
Query: 316 RDALPSNVEFLLARADEASEG-----------DSPAPARPEDTPPAPPP-----PPARDC 359
LP +EF + + E E D+PAPA P PP PPP PP D
Sbjct: 1567 ---LPPPLEF--SNSFEKPESPLTPGPPHPLPDTPAPATP--LPPVPPPAVAAAPPTLDS 1619
Query: 360 GASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGP 419
AS +T E V T + +P +P PPG P P
Sbjct: 1620 TASS------LTSYDSE-----------VATLTQGASAAPGDPHPPG---------PPAP 1653
Query: 420 PEPPPADSPATAPGPDDAEGT 440
P PA A PGPD GT
Sbjct: 1654 AAPAPA---APQPGPDPPPGT 1671
Score = 40.0 bits (92), Expect = 0.006
Identities = 88/359 (24%), Positives = 119/359 (33%), Gaps = 73/359 (20%)
Query: 20 YSQNQPRPPSAALKPSACPEPGGGA------EPDHGPAHSENTPPALATEVPASQPAPLL 73
Y Q PR SAA+ A G + + P PPA + PAS P P
Sbjct: 1084 YFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPAS-PQPPP 1142
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKR 133
+ AA ++ + + T + P + G S+ SS + +
Sbjct: 1143 AVAAPSEKNSIPIPTIIIKAPSTSSS----------GRSSQGSSTEAE------------ 1180
Query: 134 RRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRP 193
PT+ P GG G + PA + V + V A+ P
Sbjct: 1181 -----PPTQPEPTGGGGGGGSSPSPAPAMS-------PVPPSPSPVPTPAS--------P 1220
Query: 194 TTPAPVVFVSAEQGGPAKGVGSERRSGG--GDCSRVAEAVAHFEAQRDSPPTKGLRKEER 251
+ PA + F S Q G A VG+ RR GG + R + +A + GL
Sbjct: 1221 SGPATLDFTS--QFGAAL-VGAARREGGWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAA 1277
Query: 252 PGPGPGEVRIAFRISNGREPRAP-------DSGLPSGGGGRPGCAYPGSPGPGARAK--- 301
PGP +R + I G P SG GG G AY G G A
Sbjct: 1278 PGP---RLRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLP 1334
Query: 302 -----DKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPP 355
+T SP AL + E L + E P P P APPP P
Sbjct: 1335 PRPLVHPLTGKALDPASPLGLALAAR-ERALKESSEGGGAPQPPPRPPSPRYEAPPPTP 1392
Score = 34.3 bits (77), Expect = 0.34
Identities = 49/200 (24%), Positives = 70/200 (35%), Gaps = 35/200 (17%)
Query: 264 RISNGREP--RAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPS 321
R++ G +P R G PS G P ++ GS G G + +QL P R A S
Sbjct: 1038 RLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYFQL--PPRAA--S 1093
Query: 322 NVEFLLARAD---------------EASEGDSPAPARPEDTPPAPPPPPARDCGASGFHV 366
++ AR+ E +G PA +P +P PPPA A
Sbjct: 1094 AAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPA--VAAPSEKN 1151
Query: 367 DVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPA- 425
+ + ++ + G + T P +P P G G P P PA
Sbjct: 1152 SIPIPTIIIKAPSTSSSGRSSQGSSTE--AEPPTQPEPTG-----GGGGGGSSPSPAPAM 1204
Query: 426 ----DSPATAPGPDDAEGTA 441
SP+ P P G A
Sbjct: 1205 SPVPPSPSPVPTPASPSGPA 1224
Score = 32.7 bits (73), Expect = 0.99
Identities = 77/308 (25%), Positives = 94/308 (30%), Gaps = 54/308 (17%)
Query: 138 LDPTKAPPDPGGREGPPAAEEGPASAGEDV-DLLSVAEMVALVEQRAALALQSYPRPTTP 196
L T AP P PPA P + L S VA + Q A+ A P P
Sbjct: 1592 LPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPP 1651
Query: 197 APVV-FVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPG 255
AP +A Q GP G++ D ++ H S T E G
Sbjct: 1652 APAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSD---HPLETISSASTLSSLSAEGGGSA 1708
Query: 256 PGEVRIAFRISNGREPR----APDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQL 311
G +++G E A G GG PG YP QL
Sbjct: 1709 GGGGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPP-----------------QL 1751
Query: 312 ISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVT 371
++PS+ L RA AS G P P+ P P P V V
Sbjct: 1752 MTPSK---------LRGRALGASGGLRPGPSGGLRDPVTPTSPT----------VSVTGA 1792
Query: 372 GVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPP-------GQLFFLQNRGPDGPPEPPP 424
G G + V PE PP P + GP GPP PPP
Sbjct: 1793 GTDGLLALRACSGPPTAGVAGGPVAVEPEVPPVPLPTASSLPRKLLPWEEGP-GPP-PPP 1850
Query: 425 ADSPATAP 432
P P
Sbjct: 1851 LPGPLAQP 1858
Score = 31.6 bits (70), Expect = 2.2
Identities = 50/187 (26%), Positives = 61/187 (32%), Gaps = 27/187 (14%)
Query: 271 PRAPDSG-LPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLAR 329
P AP G L G P +PG P A + P R LP +V FL
Sbjct: 1450 PTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAAPE---------EPER--LPLHVRFLENC 1498
Query: 330 ADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVK 389
A P ED P PPP P R S + + + +V
Sbjct: 1499 QPRAPVTSGRGPPS-EDGPGVPPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAPSVDV- 1556
Query: 390 EETVCLTVSPEEPPPPGQLFFLQNRGP--DGPPEP-----------PPADSPATAPGPDD 436
E+ L V P PP F + P GPP P PP PA A P
Sbjct: 1557 EDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPT 1616
Query: 437 AEGTADT 443
+ TA +
Sbjct: 1617 LDSTASS 1623
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 44.7 bits (104), Expect = 3e-04
Identities = 84/327 (25%), Positives = 105/327 (32%), Gaps = 73/327 (22%)
Query: 142 KAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVF 201
+ P P G +G A P +AG A P P+ P V
Sbjct: 376 QGPTGPPGAKGQEGAHGAPGAAGNP----------------GAPGHVGAPGPSGPPGSVG 419
Query: 202 VSAEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPG------- 253
+G P K G E+ + G + S P G K+ PG
Sbjct: 420 APGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGL 479
Query: 254 PGPGEVRIAFRISNGREPRAPDSGLPSGGGGR--PGCAYPGSPGPGARAKDKITCD---L 308
PGP + + AP G+P G R PG G PGP DK + L
Sbjct: 480 PGP--------LGTKGDRGAP--GIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGL 529
Query: 309 YQLISPSRDALPSNVEFLLARADEASEGDSPAPARP--EDTPPAPPPPPARDCGASGFHV 366
P A + LL S GD A+ D PP PP P G GF
Sbjct: 530 PGFPGPQGPAGRDGLSSLL------SPGDINLLAKDVCNDCPPGPPGLP----GLPGFKG 579
Query: 367 DVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLF------------FLQNR 414
D V G G++GT+ K E P P PPG + +
Sbjct: 580 DKGVPGKP------GREGTEGKKGEAG----PPGLPGPPGIAGPQGSQGERGADGEVGQK 629
Query: 415 GPDGPPEPPPADSPATAPGPDDAEGTA 441
G G P P P PGP A+G A
Sbjct: 630 GDQGHPGVPGFMGPPGNPGPPGADGIA 656
Score = 44.3 bits (103), Expect = 3e-04
Identities = 83/326 (25%), Positives = 110/326 (33%), Gaps = 48/326 (14%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
P P G GPP P S GE + + + E + L + P P
Sbjct: 763 PQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSP-GLPGFLGPRGPPGE---P 818
Query: 204 AEQGGPAK-GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIA 262
E+G P K GV + G F+ +R P KG + PG+ I
Sbjct: 819 GEKGVPGKEGVPGKPGEPG------------FKGERGDPGIKGDKGPPGGKGQPGDPGIP 866
Query: 263 FRISNGREPRAPDSGLPSGGG--GRPGCAYPGSPG-PGARAKDKITCDLYQLISPSRDA- 318
G GLP G G PG PG PG PG R + L +LI
Sbjct: 867 GH--KGHTGLMGPQGLPGENGPVGPPGP--PGQPGFPGLRGESPSMETLRRLIQEELGKQ 922
Query: 319 LPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARD-----CGASGFHVDVVVTGV 373
L + + +LLA+ PA + P PP PP +D G G G+
Sbjct: 923 LETRLAYLLAQMP-------PAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGL 975
Query: 374 VDECIFFGKDGTKNVKEETVCLTVS-------PEEPPPPGQLFFLQNRGPDGPPEPPPAD 426
G G + K + V P P PG+ + ++ G G P P
Sbjct: 976 EGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKD-GLPGIPGPQGET 1034
Query: 427 SPA---TAPGPDDAEGTADTSLCRLY 449
PA PGP G D S C +
Sbjct: 1035 GPAGHPGLPGPPGPPGQCDPSQCAYF 1060
Score = 39.7 bits (91), Expect = 0.008
Identities = 82/331 (24%), Positives = 110/331 (33%), Gaps = 41/331 (12%)
Query: 16 PFGTYSQNQPR-PPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEV-PASQPAPLL 73
P G PR PP P + EPG P + EN P L + P P
Sbjct: 760 PTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPG 819
Query: 74 SAAAAGDEGRVLLDTWYVIK-----PGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDS 128
G EG K PG +K GG + + GH G
Sbjct: 820 EKGVPGKEGVPGKPGEPGFKGERGDPGIKGDK------GPPGGKGQPGDPGIPGHKGHTG 873
Query: 129 SKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQ 188
+ + PP P G+ G P G + + E + L E+ +E R A L
Sbjct: 874 LMGPQGLPGENGPVGPPGPPGQPGFPGL-RGESPSMETLRRLIQEELGKQLETRLAYLLA 932
Query: 189 SYP---------RPTTPAPVVFVSAEQGGPAKG--VGSERRSGGGDCSRVAEAV---AHF 234
P RP P P + G P + +G R G G + +
Sbjct: 933 QMPPAYMKSSQGRPGPPGP----PGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGER 988
Query: 235 EAQRD-SPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGS 293
A+ D P GLR E P PG+ +G P P +G G PG PG
Sbjct: 989 GAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGL-PGIPGPQGETGPAGHPG--LPGP 1045
Query: 294 PGPGARAKDKITCDLYQLISPSRDALPSNVE 324
PGP + D C + ++ A P NV+
Sbjct: 1046 PGPPGQC-DPSQCAYFASLA----ARPGNVK 1071
Score = 31.6 bits (70), Expect = 2.2
Identities = 76/342 (22%), Positives = 100/342 (29%), Gaps = 94/342 (27%)
Query: 139 DPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAP 198
DP P G GPP + P S G L +P P
Sbjct: 503 DPGIGVAGPPGPSGPPGDKGSPGSRG----------------------LPGFPGPQ---- 536
Query: 199 VVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAH--------------FEAQRDSPP-- 242
GPA G GD + +A+ V + F+ + P
Sbjct: 537 ---------GPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKP 587
Query: 243 ----TKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC----AYPGSP 294
T+G + E P PG IA + E A G G PG PG+P
Sbjct: 588 GREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNP 647
Query: 295 GP-------GARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARP--- 344
GP GA I SP ++ P +G S P P
Sbjct: 648 GPPGADGIAGAAGPPGIQG------SPGKEGPPG------------PQGPSGLPGIPGEE 689
Query: 345 ----EDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPE 400
D P PP P + G G G G G + E+ + + +
Sbjct: 690 GKEGRDGKPGPPGEPGK-AGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQ 748
Query: 401 E--PPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGT 440
E P G +GP GP PP + +PG GT
Sbjct: 749 EGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGT 790
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 44.3 bits (103), Expect = 3e-04
Identities = 101/432 (23%), Positives = 126/432 (29%), Gaps = 100/432 (23%)
Query: 25 PRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALA----TEVPASQPAPLLSAAAAGD 80
P P P EPGG E E PP +A PA P P G
Sbjct: 806 PGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGS 865
Query: 81 EGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDP 140
G PG A + G G G D
Sbjct: 866 PG----------GPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN----- 910
Query: 141 TKAPPDPG-----------GREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQS 189
T AP PG G +G P A+ P + G L +A + R
Sbjct: 911 TGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP----LGIA---GITGARGLAGPPG 963
Query: 190 YPRPTTPAPVVFVSAEQGGP-AKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRK 248
P P V E G P A G+ ER G A + +P + GL
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPG 1023
Query: 249 EERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDL 308
+ G G+ R NG P AP G G PG PG GP ++ D+
Sbjct: 1024 RDGSPGGKGD-----RGENG-SPGAP------GAPGHPG--PPGPVGPAGKSGDR----- 1064
Query: 309 YQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDV 368
+ A +P PA P P P D G +G +
Sbjct: 1065 -------------------GESGPAGPAGAPGPAGSRGAP--GPQGPRGDKGETG---ER 1100
Query: 369 VVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQN------RGPDGPPEP 422
G+ F G G +P P P GQ + + RGP GP P
Sbjct: 1101 GAAGIKGHRGFPGNPG-------------APGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 423 PPADSPATAPGP 434
P D + PGP
Sbjct: 1148 PGKDGTSGHPGP 1159
Score = 41.6 bits (96), Expect = 0.002
Identities = 83/327 (25%), Positives = 103/327 (31%), Gaps = 70/327 (21%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
PP P G G P P GE R A + P A S
Sbjct: 805 PPGPAGFPGAPGQNGEPGGKGE----------------RGAPGEKGEGGPPGVAGPPGGS 848
Query: 204 AEQGGPA-KGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGP-----GPG 257
G P +GV ER S GG A F R P G PGP PG
Sbjct: 849 GPAGPPGPQGVKGERGSPGGP------GAAGFPGARGLPGPPG--SNGNPGPPGPSGSPG 900
Query: 258 EVRIAFRISNGREPRAPDSGLPSGGGGRPG-------CAYPGSPGP-------GARAKDK 303
+ N P +P P G G+PG PG+PGP GAR
Sbjct: 901 KDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARG--- 957
Query: 304 ITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASG 363
L P P + + +G+S P + PP P G +G
Sbjct: 958 -------LAGPPGMPGPRG-----SPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAG 1005
Query: 364 FHVDVVVTGVVDECIFFGKDGTKNVKEE-----TVCLTVSPEEPPPPGQLFFLQ---NRG 415
+ G G+DG+ K + + +P P PPG + +RG
Sbjct: 1006 TAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRG 1065
Query: 416 PDGPPEPPPADSPA---TAPGPDDAEG 439
GP P A PA APGP G
Sbjct: 1066 ESGPAGPAGAPGPAGSRGAPGPQGPRG 1092
Score = 41.2 bits (95), Expect = 0.003
Identities = 109/434 (25%), Positives = 138/434 (31%), Gaps = 64/434 (14%)
Query: 21 SQNQPRPPSAALKPSACPEPGG-GAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAG 79
S QP PP P PG GA+ + GPA S P + +P P A A G
Sbjct: 328 SDGQPGPPGP---PGTAGFPGSPGAKGEVGPAGS---PGSNGAPGQRGEPGPQGHAGAQG 381
Query: 80 DEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLD 139
G ++ PG E + G G G+ + +
Sbjct: 382 PPGPPGING----SPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKN 437
Query: 140 PTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPV 199
K P P G G P + GED S E A AA + P PA
Sbjct: 438 GAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAA-GERGAPGFRGPAGP 496
Query: 200 VFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPT-KGLRKEERPGPGPGE 258
+ E KG ER + G R A E RD P G+R GPG
Sbjct: 497 NGIPGE-----KGPAGERGAPGPAGPRGAAG----EPGRDGVPGGPGMRGMPGSPGGPG- 546
Query: 259 VRIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPG----PGARAKDKITCDLYQLIS 313
S+G+ P P S SG G PG + P G PG PG + D +
Sbjct: 547 -------SDGK-PGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDG---------A 589
Query: 314 PSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPAR------DCGASGFHVD 367
P ++ R G P + +T P PP P D G G
Sbjct: 590 PGKNG---------ERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGL 640
Query: 368 VVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADS 427
+ G GK G K + +P P G RGP G P
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAG----APGAPGGKGDAGAPGERGPPGLAGAPGLRG 696
Query: 428 PATAPGPDDAEGTA 441
A PGP+ +G A
Sbjct: 697 GAGPPGPEGGKGAA 710
Score = 41.2 bits (95), Expect = 0.003
Identities = 91/369 (24%), Positives = 112/369 (30%), Gaps = 79/369 (21%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPG-GGAEPDHGPAHSENTPPALATEVPASQPAPL 72
P P G S + PP A A PG G + D G + +P A + P P PL
Sbjct: 893 PGPSG--SPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA---QGPPGAPGPL 947
Query: 73 LSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAK 132
A G G PG G VKG G +
Sbjct: 948 GIAGITGARG-------LAGPPGMP------------GPRGSPGPQGVKGESGKPGANGL 988
Query: 133 RRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRA--ALALQSY 190
R + P G G P + P S G S E + A +
Sbjct: 989 SGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGH 1048
Query: 191 PRPTTPAPVVFVSAEQG--GPAKGVGSERRSGG----------GDCSRVAE-AVAHFEAQ 237
P P P S ++G GPA G+ +G GD E A +
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGH 1108
Query: 238 RDSPPTKGLRKEERPG-PGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCA-YPGSPG 295
R P G PG PGP + A PR P PSG G+ G + +PG G
Sbjct: 1109 RGFPGNPGA-----PGSPGPAGQQGAIGSPGPAGPRGPVG--PSGPPGKDGTSGHPGPIG 1161
Query: 296 P-GARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPP 354
P G R R + SEG P +P PP PP
Sbjct: 1162 PPGPRGN---------------------------RGERGSEGSPGHPGQPG--PPGPPGA 1192
Query: 355 PARDCGASG 363
P CG G
Sbjct: 1193 PGPCCGGVG 1201
Score = 38.9 bits (89), Expect = 0.014
Identities = 55/214 (25%), Positives = 65/214 (30%), Gaps = 33/214 (15%)
Query: 241 PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYP----GSPGP 296
P G + E+ PGE E AP P+G G PG P G+PGP
Sbjct: 455 PGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGP 514
Query: 297 -GARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARP----EDTPPAP 351
G R P RD +P G P P E P P
Sbjct: 515 AGPRGAAG---------EPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGP 565
Query: 352 PPP--PARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLF 409
P P P G GF G GK+G + P PPG+
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAP------GKNGERGGPG-------GPGPQGPPGKNG 612
Query: 410 FLQNRGPDGPPEPPPADSPATAPGPDDAEGTADT 443
+GP GP P PGP +G T
Sbjct: 613 ETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT 646
Score = 38.1 bits (87), Expect = 0.023
Identities = 84/351 (23%), Positives = 105/351 (29%), Gaps = 78/351 (22%)
Query: 110 GGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDL 169
GG KG G + + + K G G P A P +AGE
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGE---- 484
Query: 170 LSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAE 229
R A + P + E+G P G R + G
Sbjct: 485 ------------RGAPGFRGPAGPNGIPGEKGPAGERGAP--GPAGPRGAAG-------- 522
Query: 230 AVAHFEAQRDS-PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC 288
E RD P G+R GPG S+G+ P P S SG G PG
Sbjct: 523 -----EPGRDGVPGGPGMRGMPGSPGGPG--------SDGK-PGPPGSQGESGRPGPPGP 568
Query: 289 AYP-GSPG----PGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPAR 343
+ P G PG PG + D +P ++ R G P +
Sbjct: 569 SGPRGQPGVMGFPGPKGNDG---------APGKNG---------ERGGPGGPGPQGPPGK 610
Query: 344 PEDTPPAPPPPPA------RDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTV 397
+T P PP P D G G + G GK G K +
Sbjct: 611 NGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA 670
Query: 398 --------SPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGT 440
+P E PPG RG GPP P A PGP A GT
Sbjct: 671 PGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGT 721
Score = 37.7 bits (86), Expect = 0.031
Identities = 65/244 (26%), Positives = 81/244 (33%), Gaps = 48/244 (19%)
Query: 208 GPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISN 267
GPA G + G +A R SP +G P PG N
Sbjct: 771 GPAGQPGDKGEGGAPGLPGIA-------GPRGSPGERGETGPPGPAGFPGAPG-----QN 818
Query: 268 GREPRAPDSGLPS--GGGGRPGCAYP-------GSPGPGARAKDKITCDLYQLISPSRDA 318
G + G P G GG PG A P G PGP ++ SP
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG--------SPGG-- 868
Query: 319 LPSNVEFLLARADEASEGDS--PAPARPEDTPPAPPPP-PARDCGASGFHVDVVVTGVVD 375
P F AR G + P P P +P PP PA + GA G V+G
Sbjct: 869 -PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG---SPGVSGPKG 924
Query: 376 ECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPD 435
+ G+ G+ + P P P G RG GPP P P +PGP
Sbjct: 925 DAGQPGEKGSPGAQGP-------PGAPGPLGIAGITGARGLAGPPGMP---GPRGSPGPQ 974
Query: 436 DAEG 439
+G
Sbjct: 975 GVKG 978
Score = 34.3 bits (77), Expect = 0.34
Identities = 71/303 (23%), Positives = 90/303 (29%), Gaps = 65/303 (21%)
Query: 144 PPDPG--GREGPPAAEE----GPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPA 197
P PG G GPP E GP + D V VA+ L YP P P
Sbjct: 126 PGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG------GLAGYPGPAGPP 179
Query: 198 PVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPG 257
G P + G+ + + P G P G
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPS--------GPPGPPGAIGPSGPAGKDG 231
Query: 258 EVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPG-PGARAKDKITCDLYQLISP-- 314
E +GR R + GLP G + PG PG G R D + + +P
Sbjct: 232 E--------SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGL 283
Query: 315 -SRDALPSNVEFLLARADEASEGDSPAP-------------ARPEDTPPAPPPPPARDCG 360
+ LP + G+ P AR D P PP PP G
Sbjct: 284 KGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPP----G 339
Query: 361 ASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP 420
+GF G V G +G + EP P G + G GPP
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGSNGAPGQR----------GEPGPQG------HAGAQGPP 383
Query: 421 EPP 423
PP
Sbjct: 384 GPP 386
Score = 34.3 bits (77), Expect = 0.34
Identities = 77/318 (24%), Positives = 102/318 (32%), Gaps = 45/318 (14%)
Query: 144 PPDPGGREG------PPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPA 197
PP P G +G PP P G D + A + A + P A
Sbjct: 634 PPGPQGLQGLPGTGGPPGENGKPGEPGPKGD--AGAPGAPGGKGDAGAPGERGPPGLAGA 691
Query: 198 PVVFVSAEQGGPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPG 255
P + A GP G G+ G G + + + SP KG + E PG G
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGE--PG-G 748
Query: 256 PGEVRIAFRISNGREPRAPDSGL-PSGGGGRPGC----AYPGSPG-------PGARAKDK 303
PG A + PR P + P G G+PG PG PG PG R +
Sbjct: 749 PG----ADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETG 804
Query: 304 ITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASG 363
+P ++ P A ++ G P + PA PP P G G
Sbjct: 805 PPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864
Query: 364 FHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPP 423
G G G+ +P P P G + G DGPP P
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNG----------NPGPPGPSG------SPGKDGPPGPA 908
Query: 424 PADSPATAPGPDDAEGTA 441
+PG +G A
Sbjct: 909 GNTGAPGSPGVSGPKGDA 926
Score = 33.5 bits (75), Expect = 0.58
Identities = 101/442 (22%), Positives = 122/442 (27%), Gaps = 80/442 (18%)
Query: 25 PRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRV 84
P PP + P + PG P + PP P P A G+ GR
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPG-----PPGAIGPSGPAGKDGESGR- 235
Query: 85 LLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAP 144
PG E+ G +KGH G D ++ K
Sbjct: 236 ---------PGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGE 286
Query: 145 PDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSA 204
G G P GP A + + A P P P
Sbjct: 287 NGLPGENGAP-GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 205 EQG-----GPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKG-LRKEERPGP---- 254
G GPA GS G QR P +G + PGP
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPG----------------QRGEPGPQGHAGAQGPPGPPGIN 389
Query: 255 ---------GPGEVRIAFRISNGREPRAP--DSGLPS--GGGGRPG-CAYPGSPGP-GAR 299
GP + A + R P P +G P GG G PG G PGP G R
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER 449
Query: 300 AKDKITCDLYQLISPSRDALPS--NVEFLLARADEASEGDSPAPARPEDTPPAPPPPPAR 357
+ I +D P L A E PA P P PA
Sbjct: 450 GEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIP--GEKGPAG 507
Query: 358 DCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPD 417
+ GA G G E G+DG P P G G D
Sbjct: 508 ERGAPG---PAGPRGAAGEP---GRDGV-------------PGGPGMRGMPGSPGGPGSD 548
Query: 418 GPPEPPPADSPATAPGPDDAEG 439
G P PP + + PGP G
Sbjct: 549 GKPGPPGSQGESGRPGPPGPSG 570
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 43.9 bits (102), Expect = 4e-04
Identities = 90/371 (24%), Positives = 113/371 (30%), Gaps = 88/371 (23%)
Query: 94 PGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGP 153
PG EK A VA + G + +G G+ K + PP P G GP
Sbjct: 873 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 932
Query: 154 ---------PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSA 204
P + P G+D + QR Q P P VV
Sbjct: 933 QGPQGPVGFPGPKGPPGPPGKD-------GLPGHPGQRGETGFQGKTGPPGPGGVV---- 981
Query: 205 EQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFR 264
GP G G +R P PGP PGE +
Sbjct: 982 ---GPQGPTGETGPIG----------------ERGHPGP--------PGP-PGEQGLPG- 1012
Query: 265 ISNGREPRAPDSGLPSGGGGRPGCA----YPGSPG-PGARAKDKITCDLYQLISPSRDAL 319
+ G+E D G P G G+ G A +PG G PGA+ + P
Sbjct: 1013 -AAGKEGAKGDPG-PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGS 1070
Query: 320 PSNVEFLLARADEASEGDSPAPARPEDTPPAPPPP-----------PARDCGASGFHVDV 368
P R + G P RP P PP P P G G V
Sbjct: 1071 PGE------RGSAGTAGPIGLPGRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV 1122
Query: 369 VVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSP 428
+ G G+DG K E PGQ ++G +GPP PP P
Sbjct: 1123 GLPGPAGPAGSPGEDGDKG-------------EIGEPGQKGSKGDKGENGPPGPPGLQGP 1169
Query: 429 ATAPGPDDAEG 439
APG +G
Sbjct: 1170 VGAPGIAGGDG 1180
Score = 43.5 bits (101), Expect = 6e-04
Identities = 99/437 (22%), Positives = 134/437 (30%), Gaps = 78/437 (17%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLL 73
P P G PR A P+ P P G + D P P + P P P
Sbjct: 888 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ-GPQGPVGFPGPKG 946
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKR 133
G +G PG+ ++ + G + +G G +R
Sbjct: 947 PPGPPGKDGL----------PGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGER 996
Query: 134 RRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRP 193
PP P G +G P A + G+ Q
Sbjct: 997 GH------PGPPGPPGEQGLPGAAGKEGAKGDP-------------------GPQGISGK 1031
Query: 194 TTPAPVVFVSAEQGGPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKG-LRKEE 250
PA + E+G P G++ G GG+ + +R S T G +
Sbjct: 1032 DGPAGLRGFPGERGLP----GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPG 1087
Query: 251 RPGP-GPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPGPGARAKDKITCDL 308
RPGP GP E AP P G GR G P G PGP A
Sbjct: 1088 RPGPQGPP--------GPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAG------- 1132
Query: 309 YQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDV 368
SP D + + S+GD + E+ PP PP GA G
Sbjct: 1133 ----SPGEDGDKGEIG---EPGQKGSKGD-----KGENGPPGPPGLQG-PVGAPGIAGGD 1179
Query: 369 VVTGVVDECIFFGKDGTKNVK-----EETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPP 423
G + FG+ G + + + L P P G+ + GP GPP P
Sbjct: 1180 GEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR 1239
Query: 424 PADSPATAPGPDDAEGT 440
P A GP G+
Sbjct: 1240 GPQGPNGADGPQGPPGS 1256
Score = 40.4 bits (93), Expect = 0.005
Identities = 78/309 (25%), Positives = 98/309 (31%), Gaps = 84/309 (27%)
Query: 140 PTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPV 199
PT P DPG R GPP P + G P P +
Sbjct: 473 PTGPPGDPGDR-GPPGRPGLPGADG---------------------------LPGPPGTM 504
Query: 200 VFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFE----AQRDSPPTKGLRKEERPGPG 255
+ + GG G ++ A+A A + A R P GL P G
Sbjct: 505 LMLPFRYGGDGS-------KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG 557
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPG-PGARAKDKITCDLYQLISP 314
PG S+G + + D G P G G G PG G PG R + P
Sbjct: 558 PG--------SSGAKGESGDPG-PQGPRGVQGP--PGPTGKPGKRGR------------P 594
Query: 315 SRDALPSNVEFLLARADEASEGDSPAPA----RPEDTPPAPPPPPARDCGASGFHVDVVV 370
D A+ D +G P R E P PP PP D G G ++
Sbjct: 595 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD-GMRGEDGEIGP 653
Query: 371 TGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPAT 430
G+ E G G + +P P PG G DGPP P P
Sbjct: 654 RGLPGEAGPRGLLGPRG----------TPGAPGQPGMA------GVDGPPGPKGNMGPQG 697
Query: 431 APGPDDAEG 439
PGP +G
Sbjct: 698 EPGPPGQQG 706
Score = 40.0 bits (92), Expect = 0.006
Identities = 100/421 (23%), Positives = 128/421 (30%), Gaps = 103/421 (24%)
Query: 34 PSACPEPGG--GAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLDTWYV 91
P P P G GA + GP + P P P A + G++G D +
Sbjct: 1091 PQGPPGPAGEKGAPGEKGPQGPAGRD---GVQGPVGLPGPAGPAGSPGEDG----DKGEI 1143
Query: 92 IKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKA-------- 143
+PG K G + G G D R ++ + K
Sbjct: 1144 GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFP 1203
Query: 144 -PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFV 202
PP P G +G P P GE+ D+ + P P P
Sbjct: 1204 GPPGPIGLQGLPGP---PGEKGENGDV-------------GPMGPPGPPGPRGPQGPNGA 1247
Query: 203 SAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTK---GLRKEERPGPGPGEV 259
QG P GS GG V E EA PP + G K ER G
Sbjct: 1248 DGPQGPP----GSVGSVGG-----VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKG---- 1294
Query: 260 RIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPGPGARAKDKITCDLYQLISPSRDA 318
E P + P G G PG P G+PGP D P +
Sbjct: 1295 ----------EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP---------GPPGEP 1335
Query: 319 LPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECI 378
P+ + + D+ +GD P P + A PP P G G G
Sbjct: 1336 GPAGQDGV--GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG------AAGAE---- 1383
Query: 379 FFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAE 438
G+ G K K E PPG+ GP GP PA PGP+
Sbjct: 1384 --GRQGEKGAKGEAGA-------EGPPGKT------GPVGP------QGPAGKPGPEGLR 1422
Query: 439 G 439
G
Sbjct: 1423 G 1423
Score = 33.5 bits (75), Expect = 0.58
Identities = 74/322 (22%), Positives = 96/322 (29%), Gaps = 47/322 (14%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
PP P G +GP A+ GP V V V ++ P P A V
Sbjct: 1235 PPGPRGPQGPNGAD-GPQGPPGSVG------SVGGVGEKGEPGEAGNPGPPGEAGVGGPK 1287
Query: 204 AEQG-----GPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGP 256
E+G GP G G G D + F P G ++ G
Sbjct: 1288 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1347
Query: 257 GEVRIAFRISNGREPRAPDSGLPSGGGGRPGC----AYPGSPGPGARAKDKITCDLYQLI 312
GE +P P PSG G PG PG+ G R +K
Sbjct: 1348 GE---------DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE 1398
Query: 313 SPSRDALPSNVEFLLARADEASEGDSPAP--------ARPEDTPPAPPPPPAR-----DC 359
P P + + P P A +D PP P PP D
Sbjct: 1399 GPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDP 1458
Query: 360 GASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGP 419
G+ G + G++ G+ G + L + P G GP GP
Sbjct: 1459 GSKGEKGHPGLIGLIGPPGEQGEKGDRG-------LPGTQGSPGAKGDGGIPGPAGPLGP 1511
Query: 420 PEPPPADSPATAPGPDDAEGTA 441
P PP P G + G A
Sbjct: 1512 PGPPGLPGPQGPKGNKGSTGPA 1533
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 43.9 bits (102), Expect = 4e-04
Identities = 90/371 (24%), Positives = 113/371 (30%), Gaps = 88/371 (23%)
Query: 94 PGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGP 153
PG EK A VA + G + +G G+ K + PP P G GP
Sbjct: 822 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 881
Query: 154 ---------PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSA 204
P + P G+D + QR Q P P VV
Sbjct: 882 QGPQGPVGFPGPKGPPGPPGKD-------GLPGHPGQRGETGFQGKTGPPGPGGVV---- 930
Query: 205 EQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFR 264
GP G G +R P PGP PGE +
Sbjct: 931 ---GPQGPTGETGPIG----------------ERGHPGP--------PGP-PGEQGLPG- 961
Query: 265 ISNGREPRAPDSGLPSGGGGRPGCA----YPGSPG-PGARAKDKITCDLYQLISPSRDAL 319
+ G+E D G P G G+ G A +PG G PGA+ + P
Sbjct: 962 -AAGKEGAKGDPG-PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGS 1019
Query: 320 PSNVEFLLARADEASEGDSPAPARPEDTPPAPPPP-----------PARDCGASGFHVDV 368
P R + G P RP P PP P P G G V
Sbjct: 1020 PGE------RGSAGTAGPIGLPGRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV 1071
Query: 369 VVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSP 428
+ G G+DG K E PGQ ++G +GPP PP P
Sbjct: 1072 GLPGPAGPAGSPGEDGDKG-------------EIGEPGQKGSKGDKGENGPPGPPGLQGP 1118
Query: 429 ATAPGPDDAEG 439
APG +G
Sbjct: 1119 VGAPGIAGGDG 1129
Score = 43.5 bits (101), Expect = 6e-04
Identities = 99/437 (22%), Positives = 134/437 (30%), Gaps = 78/437 (17%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLL 73
P P G PR A P+ P P G + D P P + P P P
Sbjct: 837 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ-GPQGPVGFPGPKG 895
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKR 133
G +G PG+ ++ + G + +G G +R
Sbjct: 896 PPGPPGKDGL----------PGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGER 945
Query: 134 RRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRP 193
PP P G +G P A + G+ Q
Sbjct: 946 GH------PGPPGPPGEQGLPGAAGKEGAKGDP-------------------GPQGISGK 980
Query: 194 TTPAPVVFVSAEQGGPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKG-LRKEE 250
PA + E+G P G++ G GG+ + +R S T G +
Sbjct: 981 DGPAGLRGFPGERGLP----GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPG 1036
Query: 251 RPGP-GPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPGPGARAKDKITCDL 308
RPGP GP E AP P G GR G P G PGP A
Sbjct: 1037 RPGPQGPP--------GPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAG------- 1081
Query: 309 YQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDV 368
SP D + + S+GD + E+ PP PP GA G
Sbjct: 1082 ----SPGEDGDKGEIG---EPGQKGSKGD-----KGENGPPGPPGLQG-PVGAPGIAGGD 1128
Query: 369 VVTGVVDECIFFGKDGTKNVK-----EETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPP 423
G + FG+ G + + + L P P G+ + GP GPP P
Sbjct: 1129 GEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR 1188
Query: 424 PADSPATAPGPDDAEGT 440
P A GP G+
Sbjct: 1189 GPQGPNGADGPQGPPGS 1205
Score = 40.4 bits (93), Expect = 0.005
Identities = 78/309 (25%), Positives = 98/309 (31%), Gaps = 84/309 (27%)
Query: 140 PTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPV 199
PT P DPG R GPP P + G P P +
Sbjct: 422 PTGPPGDPGDR-GPPGRPGLPGADG---------------------------LPGPPGTM 453
Query: 200 VFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFE----AQRDSPPTKGLRKEERPGPG 255
+ + GG G ++ A+A A + A R P GL P G
Sbjct: 454 LMLPFRYGGDGS-------KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG 506
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPG-PGARAKDKITCDLYQLISP 314
PG S+G + + D G P G G G PG G PG R + P
Sbjct: 507 PG--------SSGAKGESGDPG-PQGPRGVQGP--PGPTGKPGKRGR------------P 543
Query: 315 SRDALPSNVEFLLARADEASEGDSPAPA----RPEDTPPAPPPPPARDCGASGFHVDVVV 370
D A+ D +G P R E P PP PP D G G ++
Sbjct: 544 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD-GMRGEDGEIGP 602
Query: 371 TGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPAT 430
G+ E G G + +P P PG G DGPP P P
Sbjct: 603 RGLPGEAGPRGLLGPRG----------TPGAPGQPGMA------GVDGPPGPKGNMGPQG 646
Query: 431 APGPDDAEG 439
PGP +G
Sbjct: 647 EPGPPGQQG 655
Score = 40.0 bits (92), Expect = 0.006
Identities = 100/421 (23%), Positives = 128/421 (30%), Gaps = 103/421 (24%)
Query: 34 PSACPEPGG--GAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLDTWYV 91
P P P G GA + GP + P P P A + G++G D +
Sbjct: 1040 PQGPPGPAGEKGAPGEKGPQGPAGRD---GVQGPVGLPGPAGPAGSPGEDG----DKGEI 1092
Query: 92 IKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKA-------- 143
+PG K G + G G D R ++ + K
Sbjct: 1093 GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFP 1152
Query: 144 -PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFV 202
PP P G +G P P GE+ D+ + P P P
Sbjct: 1153 GPPGPIGLQGLPGP---PGEKGENGDV-------------GPMGPPGPPGPRGPQGPNGA 1196
Query: 203 SAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTK---GLRKEERPGPGPGEV 259
QG P GS GG V E EA PP + G K ER G
Sbjct: 1197 DGPQGPP----GSVGSVGG-----VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKG---- 1243
Query: 260 RIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPGPGARAKDKITCDLYQLISPSRDA 318
E P + P G G PG P G+PGP D P +
Sbjct: 1244 ----------EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP---------GPPGEP 1284
Query: 319 LPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECI 378
P+ + + D+ +GD P P + A PP P G G G
Sbjct: 1285 GPAGQDGV--GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG------AAGAE---- 1332
Query: 379 FFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAE 438
G+ G K K E PPG+ GP GP PA PGP+
Sbjct: 1333 --GRQGEKGAKGEAGA-------EGPPGKT------GPVGP------QGPAGKPGPEGLR 1371
Query: 439 G 439
G
Sbjct: 1372 G 1372
Score = 33.5 bits (75), Expect = 0.58
Identities = 74/322 (22%), Positives = 96/322 (29%), Gaps = 47/322 (14%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
PP P G +GP A+ GP V V V ++ P P A V
Sbjct: 1184 PPGPRGPQGPNGAD-GPQGPPGSVG------SVGGVGEKGEPGEAGNPGPPGEAGVGGPK 1236
Query: 204 AEQG-----GPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGP 256
E+G GP G G G D + F P G ++ G
Sbjct: 1237 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1296
Query: 257 GEVRIAFRISNGREPRAPDSGLPSGGGGRPGC----AYPGSPGPGARAKDKITCDLYQLI 312
GE +P P PSG G PG PG+ G R +K
Sbjct: 1297 GE---------DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE 1347
Query: 313 SPSRDALPSNVEFLLARADEASEGDSPAP--------ARPEDTPPAPPPPPAR-----DC 359
P P + + P P A +D PP P PP D
Sbjct: 1348 GPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDP 1407
Query: 360 GASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGP 419
G+ G + G++ G+ G + L + P G GP GP
Sbjct: 1408 GSKGEKGHPGLIGLIGPPGEQGEKGDRG-------LPGTQGSPGAKGDGGIPGPAGPLGP 1460
Query: 420 PEPPPADSPATAPGPDDAEGTA 441
P PP P G + G A
Sbjct: 1461 PGPPGLPGPQGPKGNKGSTGPA 1482
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 43.9 bits (102), Expect = 4e-04
Identities = 90/371 (24%), Positives = 113/371 (30%), Gaps = 88/371 (23%)
Query: 94 PGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGP 153
PG EK A VA + G + +G G+ K + PP P G GP
Sbjct: 861 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 920
Query: 154 ---------PAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSA 204
P + P G+D + QR Q P P VV
Sbjct: 921 QGPQGPVGFPGPKGPPGPPGKD-------GLPGHPGQRGETGFQGKTGPPGPGGVV---- 969
Query: 205 EQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFR 264
GP G G +R P PGP PGE +
Sbjct: 970 ---GPQGPTGETGPIG----------------ERGHPGP--------PGP-PGEQGLPG- 1000
Query: 265 ISNGREPRAPDSGLPSGGGGRPGCA----YPGSPG-PGARAKDKITCDLYQLISPSRDAL 319
+ G+E D G P G G+ G A +PG G PGA+ + P
Sbjct: 1001 -AAGKEGAKGDPG-PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGS 1058
Query: 320 PSNVEFLLARADEASEGDSPAPARPEDTPPAPPPP-----------PARDCGASGFHVDV 368
P R + G P RP P PP P P G G V
Sbjct: 1059 PGE------RGSAGTAGPIGLPGRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV 1110
Query: 369 VVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSP 428
+ G G+DG K E PGQ ++G +GPP PP P
Sbjct: 1111 GLPGPAGPAGSPGEDGDKG-------------EIGEPGQKGSKGDKGENGPPGPPGLQGP 1157
Query: 429 ATAPGPDDAEG 439
APG +G
Sbjct: 1158 VGAPGIAGGDG 1168
Score = 43.5 bits (101), Expect = 6e-04
Identities = 99/437 (22%), Positives = 134/437 (30%), Gaps = 78/437 (17%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLL 73
P P G PR A P+ P P G + D P P + P P P
Sbjct: 876 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ-GPQGPVGFPGPKG 934
Query: 74 SAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKR 133
G +G PG+ ++ + G + +G G +R
Sbjct: 935 PPGPPGKDGL----------PGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGER 984
Query: 134 RRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRP 193
PP P G +G P A + G+ Q
Sbjct: 985 GH------PGPPGPPGEQGLPGAAGKEGAKGDP-------------------GPQGISGK 1019
Query: 194 TTPAPVVFVSAEQGGPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKG-LRKEE 250
PA + E+G P G++ G GG+ + +R S T G +
Sbjct: 1020 DGPAGLRGFPGERGLP----GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPG 1075
Query: 251 RPGP-GPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPGPGARAKDKITCDL 308
RPGP GP E AP P G GR G P G PGP A
Sbjct: 1076 RPGPQGPP--------GPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAG------- 1120
Query: 309 YQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDV 368
SP D + + S+GD + E+ PP PP GA G
Sbjct: 1121 ----SPGEDGDKGEIG---EPGQKGSKGD-----KGENGPPGPPGLQG-PVGAPGIAGGD 1167
Query: 369 VVTGVVDECIFFGKDGTKNVK-----EETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPP 423
G + FG+ G + + + L P P G+ + GP GPP P
Sbjct: 1168 GEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR 1227
Query: 424 PADSPATAPGPDDAEGT 440
P A GP G+
Sbjct: 1228 GPQGPNGADGPQGPPGS 1244
Score = 40.4 bits (93), Expect = 0.005
Identities = 78/309 (25%), Positives = 98/309 (31%), Gaps = 84/309 (27%)
Query: 140 PTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPV 199
PT P DPG R GPP P + G P P +
Sbjct: 461 PTGPPGDPGDR-GPPGRPGLPGADG---------------------------LPGPPGTM 492
Query: 200 VFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFE----AQRDSPPTKGLRKEERPGPG 255
+ + GG G ++ A+A A + A R P GL P G
Sbjct: 493 LMLPFRYGGDGS-------KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG 545
Query: 256 PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPG-PGARAKDKITCDLYQLISP 314
PG S+G + + D G P G G G PG G PG R + P
Sbjct: 546 PG--------SSGAKGESGDPG-PQGPRGVQGP--PGPTGKPGKRGR------------P 582
Query: 315 SRDALPSNVEFLLARADEASEGDSPAPA----RPEDTPPAPPPPPARDCGASGFHVDVVV 370
D A+ D +G P R E P PP PP D G G ++
Sbjct: 583 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD-GMRGEDGEIGP 641
Query: 371 TGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPAT 430
G+ E G G + +P P PG G DGPP P P
Sbjct: 642 RGLPGEAGPRGLLGPRG----------TPGAPGQPGMA------GVDGPPGPKGNMGPQG 685
Query: 431 APGPDDAEG 439
PGP +G
Sbjct: 686 EPGPPGQQG 694
Score = 40.0 bits (92), Expect = 0.006
Identities = 100/421 (23%), Positives = 128/421 (30%), Gaps = 103/421 (24%)
Query: 34 PSACPEPGG--GAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLDTWYV 91
P P P G GA + GP + P P P A + G++G D +
Sbjct: 1079 PQGPPGPAGEKGAPGEKGPQGPAGRD---GVQGPVGLPGPAGPAGSPGEDG----DKGEI 1131
Query: 92 IKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKA-------- 143
+PG K G + G G D R ++ + K
Sbjct: 1132 GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFP 1191
Query: 144 -PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFV 202
PP P G +G P P GE+ D+ + P P P
Sbjct: 1192 GPPGPIGLQGLPGP---PGEKGENGDV-------------GPMGPPGPPGPRGPQGPNGA 1235
Query: 203 SAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTK---GLRKEERPGPGPGEV 259
QG P GS GG V E EA PP + G K ER G
Sbjct: 1236 DGPQGPP----GSVGSVGG-----VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKG---- 1282
Query: 260 RIAFRISNGREPRAPDSGLPSGGGGRPGCAYP-GSPGPGARAKDKITCDLYQLISPSRDA 318
E P + P G G PG P G+PGP D P +
Sbjct: 1283 ----------EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP---------GPPGEP 1323
Query: 319 LPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECI 378
P+ + + D+ +GD P P + A PP P G G G
Sbjct: 1324 GPAGQDGV--GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG------AAGAE---- 1371
Query: 379 FFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAE 438
G+ G K K E PPG+ GP GP PA PGP+
Sbjct: 1372 --GRQGEKGAKGEAGA-------EGPPGKT------GPVGP------QGPAGKPGPEGLR 1410
Query: 439 G 439
G
Sbjct: 1411 G 1411
Score = 33.5 bits (75), Expect = 0.58
Identities = 74/322 (22%), Positives = 96/322 (29%), Gaps = 47/322 (14%)
Query: 144 PPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVS 203
PP P G +GP A+ GP V V V ++ P P A V
Sbjct: 1223 PPGPRGPQGPNGAD-GPQGPPGSVG------SVGGVGEKGEPGEAGNPGPPGEAGVGGPK 1275
Query: 204 AEQG-----GPAKGVGSERRSG--GGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGP 256
E+G GP G G G D + F P G ++ G
Sbjct: 1276 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1335
Query: 257 GEVRIAFRISNGREPRAPDSGLPSGGGGRPGC----AYPGSPGPGARAKDKITCDLYQLI 312
GE +P P PSG G PG PG+ G R +K
Sbjct: 1336 GE---------DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE 1386
Query: 313 SPSRDALPSNVEFLLARADEASEGDSPAP--------ARPEDTPPAPPPPPAR-----DC 359
P P + + P P A +D PP P PP D
Sbjct: 1387 GPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDP 1446
Query: 360 GASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGP 419
G+ G + G++ G+ G + L + P G GP GP
Sbjct: 1447 GSKGEKGHPGLIGLIGPPGEQGEKGDRG-------LPGTQGSPGAKGDGGIPGPAGPLGP 1499
Query: 420 PEPPPADSPATAPGPDDAEGTA 441
P PP P G + G A
Sbjct: 1500 PGPPGLPGPQGPKGNKGSTGPA 1521
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 43.1 bits (100), Expect = 7e-04
Identities = 86/362 (23%), Positives = 137/362 (37%), Gaps = 61/362 (16%)
Query: 28 PSAALKPSACPEPGGGAEP---DHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRV 84
P A L P+P G P D G +++TP P+ P L +A ++
Sbjct: 830 PGAPLVTKESPKPDKGKGPPWADCGSTTAQSTPLVPGPTDPSQGPEGLAPHSAIEEK--- 886
Query: 85 LLDTWYVIKPGNTKEKVAFFVAHQCGGGSRA---SSMKVKGHWGSDSSKAKRRRRCLDPT 141
V+K +E V + G+ ++ + +G SK R + T
Sbjct: 887 ------VMK--GIEENVLRLQGQERAPGAEVKHRNTSSIASWFGLKKSKLPALNRRTEAT 938
Query: 142 KAPPDPGGREGPPAAEEGPASAGE-DVDLLSVAEMVA--------LVEQRAALALQSYPR 192
K GG G P E A + + + L++++++A L E++A L+ ++ PR
Sbjct: 939 KNKEGAGG--GSPLRREVKMEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPR 996
Query: 193 PTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSP--PTKGLRKEE 250
P PAP GP G+G + G + + D P+K R+
Sbjct: 997 PGGPAP---------GPNTGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWRE-- 1045
Query: 251 RPGPGPGEVRIAFRISNGREPR-APDSGL--PSGGGGRPGCAYPGSPG--PGARAKDKIT 305
P P G+ + P P +GL P G G+P PG P PG R +
Sbjct: 1046 -PKPEYGDFQPVSSDPKSPWPACGPRNGLVGPLQGCGKP----PGKPSSEPGRREEMPSE 1100
Query: 306 CDLYQLISPSR----DALPSNVEFLLARADEASEGDSPAPAR--PEDTPPA--PPP--PP 355
L + + S +L ++ + G S P++ P+ PP PPP PP
Sbjct: 1101 DSLAEPVPTSHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLDPPPGVPP 1160
Query: 356 AR 357
AR
Sbjct: 1161 AR 1162
Score = 34.7 bits (78), Expect = 0.26
Identities = 54/232 (23%), Positives = 80/232 (34%), Gaps = 20/232 (8%)
Query: 140 PTKAPPDPGGREGPPAAEEGPAS------AGEDVDLLSVAEMVALVEQRAALALQSYPRP 193
P++ PP G P G +S AG+ + S ++ + +R L L
Sbjct: 276 PSRGPPQAQGTSSGPNCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARRQ-LNLGQLLED 334
Query: 194 TTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPG 253
T F+ A GP G G G S +A +KGL K G
Sbjct: 335 TESYLQAFL-AGAAGPLNG----DHPGPGQSSSPDQAPPQLSK------SKGLPKSAWGG 383
Query: 254 PGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLIS 313
P R F ++ + P + G G P + PG P ++ K K+
Sbjct: 384 GTPEAHRPGFGATSEGQGPLPFLSMFMGAGDAPLGSRPGHPHSSSQVKSKLQIGPPSPGE 443
Query: 314 PSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPP--PARDCGASG 363
LPS L + SP+P P+ +P P P R+ G+ G
Sbjct: 444 AQGPLLPSPARGLKFLKLPPTSEKSPSPGGPQLSPQLPRNSRIPCRNSGSDG 495
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 43.1 bits (100), Expect = 7e-04
Identities = 91/375 (24%), Positives = 126/375 (33%), Gaps = 75/375 (20%)
Query: 27 PPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLL 86
PP +P PEP +P+ P P A P PAP G+
Sbjct: 227 PPQPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRCQVC--GQSFT 284
Query: 87 DTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPD 146
+W+ +K K K +F A G +K H +SK L P +AP
Sbjct: 285 QSWF-LKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASK-------LGPLRAP-- 334
Query: 147 PGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPT----TPAPVVFV 202
GP + GPA A + DL ++A AL L P P P+ + ++
Sbjct: 335 -----GPAS---GPARAPQPPDL----GLLAYEPLGPALLLAPAPTPAERREPPSLLGYL 382
Query: 203 SAEQG-GPAKGVGSE---RRSGGGD---CSRVAEAVAHFEAQRDSPPTKGLRKEE----- 250
S G G G G+E RS GG S + A+ + + EE
Sbjct: 383 SLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWAR 442
Query: 251 ------------RPGPGPGEVRIAFRISNGREPRAPDSGL------PSGGGGRPG--CAY 290
RPG GPG A ++GL P GG G G C +
Sbjct: 443 GRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDCPF 502
Query: 291 PGSPGPGARAKDKITCDLYQLISPSR-------DALPSNVEFLLARAD-EASEGDSPAPA 342
G A K+ ++ P + ++++ L R E G P P
Sbjct: 503 CGKSFRSAHHL-KVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSGAGPGP- 560
Query: 343 RPEDTPPAPPPPPAR 357
PP PPPP R
Sbjct: 561 -----PPEPPPPSQR 570
Score = 31.6 bits (70), Expect = 2.2
Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 25/194 (12%)
Query: 182 RAALALQSYPRPTTPAPVVFVSAEQGGPAKG--VGSERRSGGGDCSRVAEAVAHFEAQRD 239
R+ L RP +PA + + E+ + +G R SGG + E +A +A
Sbjct: 101 RSHLRTHQPERPRSPAARLLLELEERALLREARLGRARSSGGMQATPATEGLARPQAPSS 160
Query: 240 S----PPTKGLRKEERPGPG-------PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC 288
S P KG + P + + S+ E S G RP
Sbjct: 161 SAFRCPYCKGKFRTSAERERHLHILHRPWKCGLCSFGSSQEEELLHHSLTAHGAPERPLA 220
Query: 289 AYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTP 348
A +P P + + + + P + P E +PAPA PE+ P
Sbjct: 221 ATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEP-----------EREATPTPAPAAPEE-P 268
Query: 349 PAPPPPPARDCGAS 362
PAPP + CG S
Sbjct: 269 PAPPEFRCQVCGQS 282
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 43.1 bits (100), Expect = 7e-04
Identities = 91/375 (24%), Positives = 126/375 (33%), Gaps = 75/375 (20%)
Query: 27 PPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLL 86
PP +P PEP +P+ P P A P PAP G+
Sbjct: 227 PPQPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRCQVC--GQSFT 284
Query: 87 DTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPD 146
+W+ +K K K +F A G +K H +SK L P +AP
Sbjct: 285 QSWF-LKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASK-------LGPLRAP-- 334
Query: 147 PGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPT----TPAPVVFV 202
GP + GPA A + DL ++A AL L P P P+ + ++
Sbjct: 335 -----GPAS---GPARAPQPPDL----GLLAYEPLGPALLLAPAPTPAERREPPSLLGYL 382
Query: 203 SAEQG-GPAKGVGSE---RRSGGGD---CSRVAEAVAHFEAQRDSPPTKGLRKEE----- 250
S G G G G+E RS GG S + A+ + + EE
Sbjct: 383 SLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWAR 442
Query: 251 ------------RPGPGPGEVRIAFRISNGREPRAPDSGL------PSGGGGRPG--CAY 290
RPG GPG A ++GL P GG G G C +
Sbjct: 443 GRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDCPF 502
Query: 291 PGSPGPGARAKDKITCDLYQLISPSR-------DALPSNVEFLLARAD-EASEGDSPAPA 342
G A K+ ++ P + ++++ L R E G P P
Sbjct: 503 CGKSFRSAHHL-KVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSGAGPGP- 560
Query: 343 RPEDTPPAPPPPPAR 357
PP PPPP R
Sbjct: 561 -----PPEPPPPSQR 570
Score = 31.6 bits (70), Expect = 2.2
Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 25/194 (12%)
Query: 182 RAALALQSYPRPTTPAPVVFVSAEQGGPAKG--VGSERRSGGGDCSRVAEAVAHFEAQRD 239
R+ L RP +PA + + E+ + +G R SGG + E +A +A
Sbjct: 101 RSHLRTHQPERPRSPAARLLLELEERALLREARLGRARSSGGMQATPATEGLARPQAPSS 160
Query: 240 S----PPTKGLRKEERPGPG-------PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC 288
S P KG + P + + S+ E S G RP
Sbjct: 161 SAFRCPYCKGKFRTSAERERHLHILHRPWKCGLCSFGSSQEEELLHHSLTAHGAPERPLA 220
Query: 289 AYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTP 348
A +P P + + + + P + P E +PAPA PE+ P
Sbjct: 221 ATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEP-----------EREATPTPAPAAPEE-P 268
Query: 349 PAPPPPPARDCGAS 362
PAPP + CG S
Sbjct: 269 PAPPEFRCQVCGQS 282
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 43.1 bits (100), Expect = 7e-04
Identities = 91/375 (24%), Positives = 126/375 (33%), Gaps = 75/375 (20%)
Query: 27 PPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLL 86
PP +P PEP +P+ P P A P PAP G+
Sbjct: 227 PPQPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRCQVC--GQSFT 284
Query: 87 DTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPD 146
+W+ +K K K +F A G +K H +SK L P +AP
Sbjct: 285 QSWF-LKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASK-------LGPLRAP-- 334
Query: 147 PGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPT----TPAPVVFV 202
GP + GPA A + DL ++A AL L P P P+ + ++
Sbjct: 335 -----GPAS---GPARAPQPPDL----GLLAYEPLGPALLLAPAPTPAERREPPSLLGYL 382
Query: 203 SAEQG-GPAKGVGSE---RRSGGGD---CSRVAEAVAHFEAQRDSPPTKGLRKEE----- 250
S G G G G+E RS GG S + A+ + + EE
Sbjct: 383 SLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWAR 442
Query: 251 ------------RPGPGPGEVRIAFRISNGREPRAPDSGL------PSGGGGRPG--CAY 290
RPG GPG A ++GL P GG G G C +
Sbjct: 443 GRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDCPF 502
Query: 291 PGSPGPGARAKDKITCDLYQLISPSR-------DALPSNVEFLLARAD-EASEGDSPAPA 342
G A K+ ++ P + ++++ L R E G P P
Sbjct: 503 CGKSFRSAHHL-KVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSGAGPGP- 560
Query: 343 RPEDTPPAPPPPPAR 357
PP PPPP R
Sbjct: 561 -----PPEPPPPSQR 570
Score = 31.6 bits (70), Expect = 2.2
Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 25/194 (12%)
Query: 182 RAALALQSYPRPTTPAPVVFVSAEQGGPAKG--VGSERRSGGGDCSRVAEAVAHFEAQRD 239
R+ L RP +PA + + E+ + +G R SGG + E +A +A
Sbjct: 101 RSHLRTHQPERPRSPAARLLLELEERALLREARLGRARSSGGMQATPATEGLARPQAPSS 160
Query: 240 S----PPTKGLRKEERPGPG-------PGEVRIAFRISNGREPRAPDSGLPSGGGGRPGC 288
S P KG + P + + S+ E S G RP
Sbjct: 161 SAFRCPYCKGKFRTSAERERHLHILHRPWKCGLCSFGSSQEEELLHHSLTAHGAPERPLA 220
Query: 289 AYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTP 348
A +P P + + + + P + P E +PAPA PE+ P
Sbjct: 221 ATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEP-----------EREATPTPAPAAPEE-P 268
Query: 349 PAPPPPPARDCGAS 362
PAPP + CG S
Sbjct: 269 PAPPEFRCQVCGQS 282
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 42.7 bits (99), Expect = 0.001
Identities = 88/347 (25%), Positives = 114/347 (32%), Gaps = 69/347 (19%)
Query: 124 WGSDSSKAKRRRRCLDPTK------------APPDPGGREGPPAAEEGPASAGEDVDLLS 171
W S K + R PT APP P PP + GP ED++++S
Sbjct: 1928 WASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAPSP-PPPEDLGPDF--EDMEVVS 1984
Query: 172 VAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAV 231
L + L + + A + + GGP G SE S
Sbjct: 1985 GLSAADLDFAASLLGTEPFQEEIVAAGAM--GSSHGGP--GDSSEEESSP------TSRY 2034
Query: 232 AHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFR--ISNGREPRAPDSGLPSGGGGRPGCA 289
HF S P GL P PG RI + +G + A P G G P
Sbjct: 2035 IHFPVTVVSAP--GLA----PSATPGAPRIEQLDGVDDGTDSEAEAVQQPRGQGTPPS-- 2086
Query: 290 YPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPP 349
GPG + + P D V+F+L GD A R E PP
Sbjct: 2087 -----GPGV-VRAGVLGAAGDRARPPEDLPSEIVDFVLKNL--GGPGDGGAGPREESLPP 2138
Query: 350 APP----PPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPP 405
APP P++ G + D T F G V+ + L +PE P P
Sbjct: 2139 APPLANGSQPSQ--GLTASPADPTRT-------FAWLPGAPGVR--VLSLGPAPEPPKPA 2187
Query: 406 GQLFFLQNR--------GPDGPPEPPPADSPATAPGPDDAEGTADTS 444
L N+ +G P PPP P P P TA TS
Sbjct: 2188 TSKIILVNKLGQVFVKMAGEGEPVPPPVKQP---PLPPTISPTAPTS 2231
Score = 40.0 bits (92), Expect = 0.006
Identities = 75/317 (23%), Positives = 102/317 (32%), Gaps = 59/317 (18%)
Query: 140 PTKAPPDPGGRE----GPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTT 195
P +PP P +E PP S L+ ++ E+ AA A P T
Sbjct: 440 PLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRA---EREAARAGPEGTSPPT 496
Query: 196 PAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRK---EERP 252
P P S GGP + + + + + + R S K R+ E+ P
Sbjct: 497 PTP----STATGGPPEDSPTVAPKSTTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPP 552
Query: 253 GPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCD-LYQL 311
P EV R P P P R P +P P + I + ++
Sbjct: 553 KPPKVEVSPVLRPPITTSPPVPQEPAPVPSPPRAPTP-PSTPVPLPEKRRSILREPTFRW 611
Query: 312 ISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVT 371
S +R+ P P PA P P+PPP PA T
Sbjct: 612 TSLTRELPP------------------PPPAPPPPPAPSPPPAPA--------------T 639
Query: 372 GVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGP-PEPPPADSPAT 430
+ T + E + + S PPP G P+ P PEPPPAD
Sbjct: 640 SSRRPLLLRAPQFTPS--EAHLKIYESVLTPPPLG--------APEAPEPEPPPADDSPA 689
Query: 431 APGPDDAEGTADTSLCR 447
P P T SL R
Sbjct: 690 EPEPRAVGRTNHLSLPR 706
Score = 37.0 bits (84), Expect = 0.052
Identities = 59/251 (23%), Positives = 89/251 (35%), Gaps = 49/251 (19%)
Query: 126 SDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAAL 185
+ + +A R R C T P GR PP GP + A+V AA+
Sbjct: 200 AQAPQAPRSRACEPST--PRRSRGR--PPGRPAGPCRRKQQ----------AVVVAEAAV 245
Query: 186 ALQSYPRPTTPAPVVFVSAEQG------GPAKGVGSERRSG--------------GGDCS 225
+ P+P P PVV V + G GP G G+ RR G GG
Sbjct: 246 TI---PKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRGGGLP 302
Query: 226 RVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGR 285
V + V+ + + + GL G G G+ +++ P + SG GG
Sbjct: 303 FVIKFVSRAKKVKMGQLSLGLES----GQGQGQHEESWQ-------DVPQRRVGSGQGGS 351
Query: 286 PGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPE 345
P C ++K + ++ E + A E ++ P P
Sbjct: 352 P-CWKKQEQKLDDEEEEKKEEEEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPA 410
Query: 346 DTPPAPPPPPA 356
+PP P PPP+
Sbjct: 411 PSPPPPLPPPS 421
Score = 32.0 bits (71), Expect = 1.7
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 27 PPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGR 83
PPS + P CP P P P + PP A E P P++ A + GR
Sbjct: 419 PPSTSPPPPLCPPP----PPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGR 471
Score = 30.4 bits (67), Expect = 4.9
Identities = 44/175 (25%), Positives = 57/175 (32%), Gaps = 39/175 (22%)
Query: 207 GGPAKGVGSER------RSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVR 260
G +G G+ER R GG AE R +GLR+ R GP
Sbjct: 32 GRGGRGNGAERVRVALRRGGGATGPGGAEPGEDTALLRLLGLRRGLRRLRRLWAGP---- 87
Query: 261 IAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALP 320
R+ GR G G G GC G +++ +Q D P
Sbjct: 88 ---RVQRGR-----GRGRGRGWGPSRGCVPEEESSDGESDEEE-----FQGFHSDEDVAP 134
Query: 321 SNVEFLLARADEASEGDSPA------------PARPEDTPPAPPPPPARDCGASG 363
S++ L + G +P P R D P PP PAR G G
Sbjct: 135 SSLRSAL----RSQRGRAPRGRGRKHKTTPLPPPRLADVAPTPPKTPARKRGEEG 185
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.7 bits (99), Expect = 0.001
Identities = 57/234 (24%), Positives = 71/234 (30%), Gaps = 49/234 (20%)
Query: 212 GVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERP-GPGPGEVRIAFRISNGRE 270
G G RR GGG + + R PP GL + P GPGPG+ S +
Sbjct: 13 GGGFHRRGGGGGRGGLHDF-------RSPPPGMGLNQNRGPMGPGPGQ-------SGPKP 58
Query: 271 PRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARA 330
P P P P P P Q P +D+ ++A+
Sbjct: 59 PIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP----VVAQG 114
Query: 331 DEASEGDSPAPARPEDTPPAPPP----PPARDCGASGFHVDVVVTGVVDECIFFGKDGTK 386
+ G AP PPA PP PP G + V
Sbjct: 115 PGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVT---------------- 158
Query: 387 NVKEETVCLTVSPEEPPPPGQLFFLQNRGPD-GPPEPPPADSPATAPGPDDAEG 439
+ P PPP + P G P PPPA P PGP G
Sbjct: 159 ---------SAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG 203
Score = 39.7 bits (91), Expect = 0.008
Identities = 38/118 (32%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 188 QSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLR 247
Q P P V A+ GPA GVGS A A +PPT G
Sbjct: 96 QQQPPPPPQDSSKPVVAQGPGPAPGVGSA-------------PPASSSAPPATPPTSGAP 142
Query: 248 KEERPGPGPGEVRIAFRISNGR-EPRAPDSGLP-----SGGGGRPGCAYPGSPGPGAR 299
PGP P G P P SG+P +GG P A PG PGPG +
Sbjct: 143 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPG-PGPGPK 199
Score = 30.8 bits (68), Expect = 3.7
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 22/78 (28%)
Query: 14 PRPFGTYSQNQPRPPSAALKPSACPEPG----------------------GGAEPDHGPA 51
P P Q P PP + KP PG GA P GP
Sbjct: 89 PHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPG 148
Query: 52 HSENTPPALATEVPASQP 69
+ PPA+ + P + P
Sbjct: 149 PTPTPPPAVTSAPPGAPP 166
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 339 PAPARPEDTPPAPPPPPARDCGASGFHVDV---VVTGVVDECIFFGKDGTKNVKEETVCL 395
P P + + PPPPA SG + V G G G + + L
Sbjct: 8 PPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGAAAAAL 67
Query: 396 TVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGTA 441
+ P PPPP P PP PPPA + A A GP G A
Sbjct: 68 LLHPPPPPPPATAA----PPPPPPPPPPPASAAAPASGPPAPPGLA 109
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 42.4 bits (98), Expect = 0.001
Identities = 73/288 (25%), Positives = 92/288 (31%), Gaps = 59/288 (20%)
Query: 140 PTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALA--LQSYPRPTTPA 197
P PP P G PP P S D L A+ + R+AL +Q R
Sbjct: 10 PLPPPPPPLGAPPPPPPSAPPVST--DTSSLRRADP----KGRSALLADIQQGTRLRKVT 63
Query: 198 PVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPG 257
+ SA Q +KG E GGG + + +PPT G
Sbjct: 64 QINDRSAPQIESSKGTNKE---GGGSANTRGAS---------TPPTLG------------ 99
Query: 258 EVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRD 317
+ G P +G GG+ G PGS P R +K LI P+
Sbjct: 100 ------DLFAGGFPVLRPAGQRDVAGGKTGQG-PGSRAPSPRLPNKTISG--PLIPPASP 150
Query: 318 ALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDEC 377
L + E A + PAP P PP PP PP + + T +V
Sbjct: 151 RLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSP------IKTPLVSPP 204
Query: 378 IFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPA 425
K V C P PPPP PP PPA
Sbjct: 205 GPLTKGNLPVVAPPVPCAPPPPPPPPPP------------TPPPLPPA 240
Score = 38.9 bits (89), Expect = 0.014
Identities = 34/124 (27%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 335 EGDSPAPARPEDTPPAPPPP--PARDCGASGFHVDVVVTGVVDECI----FFGKDGTKNV 388
+ + +PA+ PPAPPPP P C + GV K +
Sbjct: 276 KAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQA 335
Query: 389 KEETVCLTVSPEEPPPPGQLFFLQNR---------GPDGPPEPPPADSPATAPGPDDAEG 439
+ P P PPG FLQ + G PP PPA SP T +
Sbjct: 336 PPQKAGAQALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPARSPTTELSSKSQQA 395
Query: 440 TADT 443
TA T
Sbjct: 396 TAWT 399
Score = 32.3 bits (72), Expect = 1.3
Identities = 28/99 (28%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 267 NGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFL 326
+ +EP AP LP P + P P PG + + L SPS A P
Sbjct: 285 DAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPK-SPSFQAPPQKAGAQ 343
Query: 327 LARADEASEGDSPAPARPEDTPPA--------PPPPPAR 357
A A G P + P PP PPAR
Sbjct: 344 ALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPAR 382
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,815,332
Number of Sequences: 37866
Number of extensions: 2418006
Number of successful extensions: 31053
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 820
Number of HSP's that attempted gapping in prelim test: 19969
Number of HSP's gapped (non-prelim): 9061
length of query: 603
length of database: 18,247,518
effective HSP length: 108
effective length of query: 495
effective length of database: 14,157,990
effective search space: 7008205050
effective search space used: 7008205050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.