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Search of human proteins with 28872794
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
(358 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 749 0.0
gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens] 167 1e-41
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 153 3e-37
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 119 5e-27
gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens] 77 3e-14
gi|110832843 TBP-associated factor 4 [Homo sapiens] 71 1e-12
gi|153792074 proline rich 12 [Homo sapiens] 68 1e-11
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 66 4e-11
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 60 4e-09
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 58 1e-08
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 58 1e-08
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 58 1e-08
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 58 1e-08
gi|50428940 mediator complex subunit 25 [Homo sapiens] 56 4e-08
gi|12751477 forkhead box L2 [Homo sapiens] 55 7e-08
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 54 2e-07
gi|146134388 YLP motif containing 1 [Homo sapiens] 54 2e-07
gi|59938776 cAMP responsive element binding protein 5 isoform de... 54 3e-07
gi|59938774 cAMP responsive element binding protein 5 isoform be... 54 3e-07
gi|59938772 cAMP responsive element binding protein 5 isoform ga... 54 3e-07
gi|59938770 cAMP responsive element binding protein 5 isoform al... 54 3e-07
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 52 6e-07
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 52 6e-07
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 52 6e-07
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 52 6e-07
gi|205277421 Jun dimerization protein 2 isoform b [Homo sapiens] 52 6e-07
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 52 8e-07
gi|55741677 SET domain containing 1A [Homo sapiens] 52 8e-07
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 52 8e-07
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 52 8e-07
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 749 bits (1933), Expect = 0.0
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET 60
MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET
Sbjct: 1 MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET 60
Query: 61 SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM 120
SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM
Sbjct: 61 SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM 120
Query: 121 PGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP 180
PGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP
Sbjct: 121 PGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP 180
Query: 181 YQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA 240
YQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA
Sbjct: 181 YQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA 240
Query: 241 LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR 300
LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR
Sbjct: 241 LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR 300
Query: 301 DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA 358
DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
Sbjct: 301 DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA 358
>gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens]
Length = 281
Score = 167 bits (424), Expect = 1e-41
Identities = 129/337 (38%), Positives = 169/337 (50%), Gaps = 78/337 (23%)
Query: 34 PRGAG-PAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEKAK 92
PRG P + A P LG +CEHE SID+SAYI+ ++ L+DLF
Sbjct: 11 PRGGQQPLEFSGGRAGPGELGDMCEHEASIDLSAYIESG--EEQLLSDLF---------- 58
Query: 93 AAVGPTGGGGGGDFDYPGAPAGPGGAVM-PGGAHGPPPGYGCAAAGYLDGRLEPLYERVG 151
AV P G PG PA P P PP +G G +Y G
Sbjct: 59 -AVKPAPEARG--LKGPGTPAFPHYLPPDPRPFAYPPHTFGPDRKALGPG----IYSSPG 111
Query: 152 APALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIA 211
+ R + +K+EPR + ++ + P LQ+Q+A
Sbjct: 112 SYDPRAVAVKEEPRGPEGSRAASRGSYNP-------------------------LQYQVA 146
Query: 212 HCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGA--------AHPDL 263
HCGQT MHL PPT L PG L+ L A P L
Sbjct: 147 HCGQTAMHL-------PPT---------------LAAPGQPLRVLKAPLATAAPPCSPLL 184
Query: 264 RASGGSGA-GKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDND 322
+A +G K KK+V+K+S EYR+RRERNNIAVRKSRDKAK+R +ETQQKVLE ++N+
Sbjct: 185 KAPSPAGPLHKGKKAVNKDSLEYRLRRERNNIAVRKSRDKAKRRILETQQKVLEYMAENE 244
Query: 323 RLRKRVEQLSRELDTLRGIFRQLPE-SSLVKAMGNCA 358
RLR RVEQL++ELDTLR +FRQ+PE ++L+K +G C+
Sbjct: 245 RLRSRVEQLTQELDTLRNLFRQIPEAANLIKGVGGCS 281
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 153 bits (386), Expect = 3e-37
Identities = 125/360 (34%), Positives = 159/360 (44%), Gaps = 81/360 (22%)
Query: 28 SAAFGFPRGAGPAQPPAPPAAPEP----LGGICEHETSIDISAYIDPAAFNDEFLADLFQ 83
+AA+G A PA PPA P P LG I +HE +ID S Y++P
Sbjct: 37 AAAYGGK--AAPAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATAT 94
Query: 84 HSRQQEKAKAAVGPTGGGGGGDF-------DYPGAPAGPGGAVMPGGAHGPPPGYGCAAA 136
+ + A P G DF DY G P YG +
Sbjct: 95 DTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNC------------KKPAEYGYVSL 142
Query: 137 GYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLF-PYQPPPPPPPSHPHPH 195
G R+GA AK G F P PPPPPP
Sbjct: 143 G-----------RLGA-----------------AKGALHPGCFAPLHPPPPPP------- 167
Query: 196 PPPAHLAAPHLQFQIAHCGQT------------------TMHLQPGHPTPPPTPVPSPHP 237
PPPA L A F+ A C + + G+ P S
Sbjct: 168 PPPAELKA-EPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLST 226
Query: 238 APALGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVR 297
+ + G P P A A + + KAKK+VDK+S+EY++RRERNNIAVR
Sbjct: 227 SSSSSPPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVR 286
Query: 298 KSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNC 357
KSRDKAK RN+ETQ KVLELT++N+RL+K+VEQLSREL TLR +F+QLPE L+ + G+C
Sbjct: 287 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE-PLLASSGHC 345
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 119 bits (297), Expect = 5e-27
Identities = 114/348 (32%), Positives = 147/348 (42%), Gaps = 114/348 (32%)
Query: 23 PHAPSSAAFGFPRGAG-PAQPPAPPAAPEP---LGGICEHETSIDISAYIDPAAF----- 73
P A F P AG P + P A EP + + E++ID SAYID A
Sbjct: 16 PWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPTLE 75
Query: 74 --NDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGY 131
+DE ADLF + + GG G + ++PGG P G
Sbjct: 76 LCHDELFADLFNSNHK------------AGGAGPLE-----------LLPGGP-ARPLGP 111
Query: 132 GCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSH 191
G AA P ++K+EP D +L
Sbjct: 112 GPAA---------------------PRLLKREPDWGDGDAPGSL---------------- 134
Query: 192 PHPHPPPAHLAAPHLQFQIAHCGQTTMHLQP-GHPTPPPTPVP---SPHPAPALGAAGLP 247
L Q+A C QT + L G PTPP +P P SP PA P
Sbjct: 135 --------------LPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPA------P 174
Query: 248 GPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRN 307
GP AGK + D+ S EYR RRERNNIAVRKSRDKAK+RN
Sbjct: 175 GPARE----------------KSAGK--RGPDRGSPEYRQRRERNNIAVRKSRDKAKRRN 216
Query: 308 VETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMG 355
E QQK++EL+++N++L +RVEQL+R+L LR F+QLP + A G
Sbjct: 217 QEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFFKQLPSPPFLPAAG 264
>gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens]
Length = 150
Score = 76.6 bits (187), Expect = 3e-14
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 9/91 (9%)
Query: 261 PDLRASGGSGAGKA-------KKS--VDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQ 311
P L +G G GKA KKS +D+NS+EYR RRERNN+AV+KSR K+KQ+ +T
Sbjct: 32 PQLVPAGPGGGGKAVAPSKQSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDTL 91
Query: 312 QKVLELTSDNDRLRKRVEQLSRELDTLRGIF 342
Q+V +L +N+RL +++ L++EL L+ +F
Sbjct: 92 QRVNQLKEENERLEAKIKLLTKELSVLKDLF 122
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 71.2 bits (173), Expect = 1e-12
Identities = 83/275 (30%), Positives = 98/275 (35%), Gaps = 70/275 (25%)
Query: 20 QSPPHAPSSAAFGFPRGAGPAQP--------PAPPAA-----PEPLGGICEH-ETSIDIS 65
+ PP + G P+ GP P PAPPAA PE G C + ++
Sbjct: 88 EPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVA 147
Query: 66 AYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGA- 124
A +PA A A+A GP G G G PG PAGPG A G+
Sbjct: 148 AGPEPAPAGPAKPA-----GPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA 202
Query: 125 ------HGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGL 178
H P G L PL + PA VI+ P A A
Sbjct: 203 ALLNSHHAAAPAVSLVNNG--PAALLPLPK----PAAPGTVIQTPPFVGAAAPPAPAAPS 256
Query: 179 FPYQPPPPPPPSHPHPHPP-PAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVP---- 233
P P P P + P P PP PA LA P PGHP PPT P
Sbjct: 257 PPAAPAPAAPAAAPPPPPPAPATLARP-----------------PGHPAGPPTAAPAVPP 299
Query: 234 ------------SPHPAPA----LGAAGLPGPGSA 252
+P PAPA G +G PGPG+A
Sbjct: 300 PAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA 334
Score = 42.4 bits (98), Expect = 6e-04
Identities = 63/221 (28%), Positives = 72/221 (32%), Gaps = 49/221 (22%)
Query: 65 SAYIDPAAFNDEF----LADLFQHSRQQEKAKAA-----------VGPTGGGGGGDFDYP 109
S +D FN E ++DL Q A AA V G G+
Sbjct: 5 SDLLDEVFFNSEVDEKVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVS 64
Query: 110 GAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLY---ERVGAPA-LRPLV------ 159
G+PAG GA A G P G A GR P +R G P+ RPLV
Sbjct: 65 GSPAGAAGAGPAAPAEGAP---GAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAP 121
Query: 160 --IKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTT 217
K P E A A P P P P PA A P G
Sbjct: 122 PAAKLRPPPEGSAGSCA--------PVPAAAAVAAGPEPAPAGPAKP--------AGPAA 165
Query: 218 MHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGA 258
+ + G P P P P P P P G PG L G A
Sbjct: 166 LAARAG---PGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAA 203
Score = 35.4 bits (80), Expect = 0.079
Identities = 38/118 (32%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 14 PMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAF 73
P + SPP AP+ AA P A P PPAP P G T+ A PAA
Sbjct: 249 PPAPAAPSPPAAPAPAA---PAAAPPPPPPAPATLARPPGHPAGPPTAAP--AVPPPAA- 302
Query: 74 NDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPG-GAHGPPPG 130
++ A AA P GG PAG G PG A P PG
Sbjct: 303 -----------AQNGGSAGAAPAPAPAAGG--------PAGVSGQPGPGAAAAAPAPG 341
Score = 30.8 bits (68), Expect = 2.0
Identities = 62/258 (24%), Positives = 77/258 (29%), Gaps = 49/258 (18%)
Query: 11 PRPPMSSHLQSPPHAPSSAAFGFPR----------GAGPAQPPAPPAAPEPLGGICEHET 60
P PP + L PP P+ P G+ A P PAA P G +
Sbjct: 272 PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAG--VSGQP 329
Query: 61 SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM 120
+A E + Q + + AA GP A P A +
Sbjct: 330 GPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAV 389
Query: 121 PGGAHGPPPGYGCAAAGYLDGRLE--PLYERVGAPA-LRPLVIKQEPREEDEAKQLALAG 177
P A G P G AAG + L P G A L P V
Sbjct: 390 PPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTV------------------ 431
Query: 178 LFPYQPPPPPPPSHPHPHPPPAHL----------------AAPHLQFQIAHCGQTTMHLQ 221
L P P PP P++ P + A +Q Q QTTM +
Sbjct: 432 LAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPR 491
Query: 222 PGHPTPPPTPVPSPHPAP 239
P PT P S AP
Sbjct: 492 PATPTSAPPVQISTVQAP 509
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 68.2 bits (165), Expect = 1e-11
Identities = 80/270 (29%), Positives = 92/270 (34%), Gaps = 69/270 (25%)
Query: 7 YEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEP-------LGGICEHE 59
Y+A PP+S PP P+ RG P QPPA PA P P LGG E
Sbjct: 1299 YQAGLTPPLSPPKSVPPSVPA-------RGLQP-QPPATPAVPHPPPSGAFGLGGALEAA 1350
Query: 60 TSIDISAYI-DPAAFNDEFLA---------------DLFQHSRQQEKAKAAVGPTGG--- 100
S + P DE L + ++ QE +A+
Sbjct: 1351 ESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISALDDPPL 1410
Query: 101 GGGGDFDYP-GAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLV 159
G D P G P P AV GPPP G +A PL E P P
Sbjct: 1411 AGPKDTSTPDGPPLAPAAAVP-----GPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAP 1465
Query: 160 IKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMH 219
Q P PPPPPPP P PPP L AP +
Sbjct: 1466 TPQ-----------------PQPPPPPPPPQPALPSPPP--LVAP----------TPSSP 1496
Query: 220 LQPGHPTPPPTPVPSPHPAPALGAAGLPGP 249
P P PPP +PSP P P AA L P
Sbjct: 1497 PPPPLPPPPPPAMPSPPPPPPPAAAPLAAP 1526
Score = 48.5 bits (114), Expect = 9e-06
Identities = 66/279 (23%), Positives = 86/279 (30%), Gaps = 74/279 (26%)
Query: 7 YEAEPRP-PMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDIS 65
+ + P P P S LQ PP +P + P +P P P LG
Sbjct: 157 FGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGF----------- 205
Query: 66 AYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDY-PGAPAGPGGAVMPGGA 124
++ +GP G G Y PG P P
Sbjct: 206 ---------------------ERLAGGGVLGPAGLGPAQTPPYRPGPPDPP--------- 235
Query: 125 HGPPPGY----------GCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLA 174
PPP + AAA + LY GA P + PR++ K
Sbjct: 236 --PPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPERALPRQDTVIKHYQ 293
Query: 175 LAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGH-PTPPPTPVP 233
QPPPPPPP+H H CG + + GH +P+
Sbjct: 294 RPA--SAQPPPPPPPAHALQH--------------YLSCGGS--YPSMGHRANLACSPLG 335
Query: 234 SPHPAPALGAAGLPGPGSALKGLGAAHPDLRASGGSGAG 272
P+P G GP A G A+GG GAG
Sbjct: 336 GGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAG 374
Score = 47.0 bits (110), Expect = 3e-05
Identities = 74/297 (24%), Positives = 97/297 (32%), Gaps = 53/297 (17%)
Query: 11 PRPPMSSHLQS----PPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISA 66
P PP +S A +S G GAG PP P L E + +
Sbjct: 650 PSPPRTSGADGLVGEDGAADASKGLGGSGGAG-----GPPGTPYELAK--EDPQRYHLQS 702
Query: 67 YIDPAAFNDEFLADLFQ----HSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPG 122
I +A DE + ++++K G T G + GA A GA +
Sbjct: 703 VIRTSASLDEGATAALELGLGRLKEKKKGPERGGETPEGLATSVVHYGAGAKELGAFLQK 762
Query: 123 GAHGPPPGYGCAAAGYLDGRLE------PLYERVGAPALRPLVIKQEPREEDEAKQLALA 176
PPP LE PL P L P V+ P A ++ +
Sbjct: 763 SPPPPPPTAQSTQPTPHGLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVH 822
Query: 177 GL-------FPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPP 229
L P PPPPPPP P P AHL + L+P P+P
Sbjct: 823 LLEPATRDGAPQPPPPPPPPPPPMPLQLEAHL--------------RSHGLEPAAPSPRL 868
Query: 230 TPVPSPHPAPALGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYR 286
P S P PG+ + LGA P A G +G G + YR
Sbjct: 869 RPEESLDP-----------PGAMQELLGALEPLPPAPGDTGVGPPNSEGKDPAGAYR 914
Score = 45.8 bits (107), Expect = 6e-05
Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 29/192 (15%)
Query: 19 LQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFL 78
L+ P AP G P G P +P P G T + F D L
Sbjct: 887 LEPLPPAPGDTGVGPPNSEGK-DPAGAYRSPSPQG------TKAPRFVPLTSICFPDSLL 939
Query: 79 ADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPG------YG 132
D ++ GGG D+ G P G P GPPPG YG
Sbjct: 940 QD-----EERSFFPTMEEMFGGGAADDYGKAGPPEDEGD---PKAGAGPPPGPPAYDPYG 991
Query: 133 CAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHP 192
G G P +G +P E A+ L L P+Q PPPPP
Sbjct: 992 PYCPGRASGA-GPETPGLGLDPNKP----PELPSTVNAEPLGLIQSGPHQAAPPPPPP-- 1044
Query: 193 HPHPPPAHLAAP 204
P PPPA + P
Sbjct: 1045 -PPPPPAPASEP 1055
Score = 42.0 bits (97), Expect = 8e-04
Identities = 64/255 (25%), Positives = 80/255 (31%), Gaps = 67/255 (26%)
Query: 92 KAAVGPTGGGGGGDF----DYPGAPAGPGG-AVMPGGAHGPPP----------GYGCAAA 136
+AA G GGGGG + PG G GG GGA PPP G AA
Sbjct: 366 EAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAA 425
Query: 137 GYLDGRLEPLYERVGAP--------ALRPLVIKQE---PREEDEAKQLALAGLFPYQPPP 185
Y G+ G L P Q + +D +K + +G P P
Sbjct: 426 AYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSG 485
Query: 186 PPPPS-------------------HPHPHPPPAH------LAAPHLQFQIAHCGQTTMH- 219
PPPP P+P PA A+P L + H + H
Sbjct: 486 PPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHG 545
Query: 220 -------------LQPGHPTPPPTPVPSPHPAPALGAAGLPGP--GSALKGLGAAHPDLR 264
P H P P+ P +G+ G PG S L P
Sbjct: 546 GGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGA 605
Query: 265 ASGGSGAGKAKKSVD 279
S +GAG K D
Sbjct: 606 GSYAAGAGGYKGKGD 620
Score = 37.4 bits (85), Expect = 0.021
Identities = 71/268 (26%), Positives = 89/268 (33%), Gaps = 58/268 (21%)
Query: 13 PPMSSHLQSPPHAPSSAAFGF------PRGAGPAQPPAPPAAPEPLGGICEHETSIDISA 66
P + SH SP +PS++ G R P PP PP P P+ E S
Sbjct: 803 PSVLSHAPSP--SPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPMPLQLEAHLR---SH 857
Query: 67 YIDPAAFNDEFLAD--LFQHSRQQEKAKAA--VGPTGGGGGGDFDYPGAPAGPGGAVMPG 122
++PAA + + L QE A + P G G G P G P
Sbjct: 858 GLEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTG-----VGPPNSEGKD--PA 910
Query: 123 GAHGPPPGYGCAAAGYL--------DGRLE-------PLYERVGAPALRPLVIKQEPREE 167
GA+ P G A ++ D L+ P E + K P E
Sbjct: 911 GAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGP-PE 969
Query: 168 DEAKQLALAGLFPYQPPPPPPPSHPH------------PHPPPAHL---AAPHLQFQIAH 212
DE A AG PPP PP P+ P P L P L +
Sbjct: 970 DEGDPKAGAG-----PPPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNA 1024
Query: 213 CGQTTMHLQPGHPTPPPTPVPSPHPAPA 240
+ P PPP P P P PAPA
Sbjct: 1025 EPLGLIQSGPHQAAPPPPPPPPPPPAPA 1052
Score = 29.6 bits (65), Expect = 4.4
Identities = 42/156 (26%), Positives = 51/156 (32%), Gaps = 48/156 (30%)
Query: 30 AFGFPRGAGPAQ-----------PPAPPAAPEPLG-GICEHETSIDISA---------YI 68
A+G G G AQ PP PP+ P P G C+ + + Y
Sbjct: 456 AYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYP 515
Query: 69 DPAAFNDEF------LADLFQHSRQQEKAKAAVGPTGGGGGGD---------FDYPGAPA 113
PAA + L+ HS GP+ GGGG+ P A
Sbjct: 516 GPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATG 575
Query: 114 GPGGAVMPGG---------AHGP---PPGYGCAAAG 137
P G PG A P PPG G AAG
Sbjct: 576 RPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAG 611
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 66.2 bits (160), Expect = 4e-11
Identities = 54/174 (31%), Positives = 64/174 (36%), Gaps = 40/174 (22%)
Query: 100 GGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLV 159
GGGGG F G G GG PPPG G L+ P+ G +P +
Sbjct: 10 GGGGGGFHRRGGGGGRGGL---HDFRSPPPGMG------LNQNRGPMGPGPGQSGPKPPI 60
Query: 160 IKQEPREEDEAKQLALAGLFPYQPPP-PPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTM 218
P ++ + QPPP PPP P PH PP H PH Q Q
Sbjct: 61 PPPPPHQQQQ------------QPPPQQPPPQQPPPHQPPPH-PQPHQQQQ--------- 98
Query: 219 HLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAAHPDLRASGGSGAG 272
PPP P S P A G PG GSA +A P + G+ G
Sbjct: 99 --------PPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG 144
Score = 35.8 bits (81), Expect = 0.061
Identities = 38/120 (31%), Positives = 42/120 (35%), Gaps = 23/120 (19%)
Query: 13 PPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAA 72
PP SS +PP P ++ G P G+GP P PP A T P
Sbjct: 125 PPASS--SAPPATPPTS--GAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPP- 179
Query: 73 FNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYG 132
Q A GP G G PG P GP G MPG GP PG G
Sbjct: 180 ----------QAGGPPPPPAAVPGP----GPGPKQGPG-PGGPKGGKMPG---GPKPGGG 221
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 59.7 bits (143), Expect = 4e-09
Identities = 66/259 (25%), Positives = 94/259 (36%), Gaps = 30/259 (11%)
Query: 1 MESADFYEAE-PRPPMSSHLQSPPHA--PSSAAFGFPRGAGPAQPPAPPAAPEPLGGICE 57
M +A+ EA+ P PP++ SPP P S + P P P +PP P P +
Sbjct: 391 MPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPPPLPSPPPPPAQ 450
Query: 58 HETSIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGG 117
E + + PA + + S++ E+ A GP G +P P
Sbjct: 451 EEQE-ESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGT----------SPPTPTP 499
Query: 118 AVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAG 177
+ GG P + +L + + V A + R + + +ED K +
Sbjct: 500 STATGGPPEDSPTVAPKSTTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEV 559
Query: 178 LFPYQPP---PPPPPSHPHPHPPPAHLAAPH-------------LQFQIAHCGQTTMHLQ 221
+PP PP P P P P P P L+ T L
Sbjct: 560 SPVLRPPITTSPPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELP 619
Query: 222 PGHPTPPPTPVPSPHPAPA 240
P P PPP P PSP PAPA
Sbjct: 620 PPPPAPPPPPAPSPPPAPA 638
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 156 RPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQ 215
R + + P E E +L L P P PPPP P PPP P
Sbjct: 384 RAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPPLCPPP----------- 432
Query: 216 TTMHLQPGHPTPPPTPVPSPHPA 238
P +PPP P P P PA
Sbjct: 433 ------PPPVSPPPLPSPPPPPA 449
Score = 36.6 bits (83), Expect = 0.036
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 162 QEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQ 221
+E E A+++ A PPPP + P P PPP L P C
Sbjct: 379 EEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPP-LPPPSTSPPPPLC-------P 430
Query: 222 PGHPTPPPTPVPSPHPAPA 240
P P P P+PSP P PA
Sbjct: 431 PPPPPVSPPPLPSPPPPPA 449
Score = 35.4 bits (80), Expect = 0.079
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 179 FPYQPPPPPPPSHPHPHPPPAHLAAPHL----QFQIAHCGQTTMHLQP-GHPTPPPTPVP 233
FP P PS P PPP+ A+P L Q ++ L P PP P P
Sbjct: 1906 FPAPPRRSRRPSPLAPRPPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAP 1965
Query: 234 SPHPAPALGAAGLPGPGSALKGLGAAHPDLRAS 266
SP P LG + GL AA D AS
Sbjct: 1966 SPPPPEDLGPDF--EDMEVVSGLSAADLDFAAS 1996
Score = 33.5 bits (75), Expect = 0.30
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 163 EPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQT--TMHL 220
EPR L+L P P + PH PA P Q Q+ Q T L
Sbjct: 692 EPRAVGRTNHLSLPRFAPVVTTPVK--AEVSPHGAPALSNGPQTQAQLLQPLQALQTQLL 749
Query: 221 QPGHPTPPPT--PVPSPHPAPALGAAGLPGPGS 251
P P P P PSP P L A + G GS
Sbjct: 750 PQALPPPQPQLQPPPSPQQMPPLEKARIAGVGS 782
Score = 30.8 bits (68), Expect = 2.0
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 11 PRPP----------MSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET 60
PRPP S L+ PP P+S +G PP P +P P +
Sbjct: 1921 PRPPPSRWASPPLKTSPQLRVPP--PTSVVTALTPTSGELAPPGPAPSPPPPEDLGPDFE 1978
Query: 61 SIDISAYIDPAAFNDEFLADLFQHSRQQEK--AKAAVGPTGGGGGGDFDYPGAP 112
+++ + + A +F A L QE+ A A+G + GG G + +P
Sbjct: 1979 DMEVVSGLSAADL--DFAASLLGTEPFQEEIVAAGAMGSSHGGPGDSSEEESSP 2030
Score = 29.3 bits (64), Expect = 5.7
Identities = 42/163 (25%), Positives = 52/163 (31%), Gaps = 48/163 (29%)
Query: 95 VGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPA 154
+G G GG G + PA P A+G P G A+ R GAP
Sbjct: 2121 LGGPGDGGAGPREESLPPAPPL-------ANGSQPSQGLTASPADPTRTFAWLP--GAPG 2171
Query: 155 LRPLVIKQEPREEDEAKQ------------LALAGLFPYQPPPPPPPSHPHPHPPPAHLA 202
+R L + P A + +AG + P PPP P PP
Sbjct: 2172 VRVLSLGPAPEPPKPATSKIILVNKLGQVFVKMAG----EGEPVPPPVKQPPLPPTISPT 2227
Query: 203 APHLQFQIAHCGQTTMHLQPG------------HPTPPPTPVP 233
AP T+ L PG P PPP P P
Sbjct: 2228 AP-----------TSWTLPPGPLLGVLPVVGVVRPAPPPPPPP 2259
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 57.8 bits (138), Expect = 1e-08
Identities = 61/194 (31%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 92 KAAVGPTG----GGGGGDFDYPGAPAGPGGAVMPGGAHGP--PPGYGCAAAGYLDGRLEP 145
K GP G G GD PG P PG PG A GP PPGYG L G
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGS---PGPA-GPAGPPGYGPQGEPGLQGTQGV 632
Query: 146 LYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPH 205
GAP P E +L+++ P P PP PP HP P PP
Sbjct: 633 ----PGAPG--------PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG------ 674
Query: 206 LQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLG-AAHPDLR 264
+ + CG + G P P P P P P G G PG +L G P L
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPGIGFPGP-PGPK-GDQGFPGTKGSLGCPGKMGEPGLP 732
Query: 265 ASGGSGAGKAKKSV 278
G K + +V
Sbjct: 733 GKPGLPGAKGEPAV 746
Score = 37.0 bits (84), Expect = 0.027
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 36/190 (18%)
Query: 92 KAAVGPTGGGGG----------GDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDG 141
K +GP G G GD PG P GP GA P G GPP G +
Sbjct: 332 KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPP-GPRGARGPQGPSGPPGVPGSPGSSRPGL 390
Query: 142 RLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGL-----FPYQPPPPPPPSH----- 191
R P G P L+ ++ +D G P P PP PP
Sbjct: 391 RGAP-----GWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRK 445
Query: 192 --PHPHPPPAHLAAPHLQFQIAHCGQTTMHLQ--PGHPTPPPTP-VPSPHPAPAL----G 242
P H P +L +P + G+ + P P PP P +P H + G
Sbjct: 446 GPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQG 505
Query: 243 AAGLPG-PGS 251
AAGL G PGS
Sbjct: 506 AAGLKGSPGS 515
Score = 36.2 bits (82), Expect = 0.047
Identities = 56/229 (24%), Positives = 69/229 (30%), Gaps = 36/229 (15%)
Query: 8 EAEPRPPMSSH-LQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISA 66
+A PR P PP P + G GP P AP P G H I
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGI---- 1266
Query: 67 YIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTG-GGGGGDFDYPGAPAGPGGAVMPGGAH 125
+ + + GP G G GD PG PG +P G
Sbjct: 1267 -------------------KGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP-GPR 1306
Query: 126 GPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPP 185
G P G G +G P P+ K P + L + L P P P
Sbjct: 1307 GDPGFQGFPGVKGEKGN-PGFLGSIGPPG--PIGPKGPPGVRGDPGTLKIISL-PGSPGP 1362
Query: 186 PPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPS 234
P P P P P + CG +PG P TP P+
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPG---NLGPCGPRG---KPGKDGKPGTPGPA 1405
Score = 32.0 bits (71), Expect = 0.88
Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 25/163 (15%)
Query: 96 GPTGGGGGGDFDYPGAPAGPGGAVMPG--GAHGPPPGYGCAAAGYLDGRLEPLYERVGAP 153
GPTG G +PG P PG A++PG G GPP G A G P
Sbjct: 1216 GPTGIEG-----FPGPPGLPG-AIIPGQTGNRGPPGSRGSPGAP----------GPPGPP 1259
Query: 154 ALRPLVIKQEPREEDEAKQLALAGLFPYQPPP-----PPPPSHPHPHPPPAHLAAPHLQF 208
+ IK + G PP P P P P P P ++
Sbjct: 1260 GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKG 1319
Query: 209 QIAHCGQTTMHLQPG--HPTPPPTPVPSPHPAPALGAAGLPGP 249
+ + G PG P PP P + G PGP
Sbjct: 1320 EKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGP 1362
Score = 28.9 bits (63), Expect = 7.4
Identities = 69/267 (25%), Positives = 89/267 (33%), Gaps = 58/267 (21%)
Query: 23 PHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLF 82
P P + PRG P QP PP P G E ++
Sbjct: 779 PGTPGNEGLDGPRG-DPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGL----------- 825
Query: 83 QHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGR 142
+ Q+ + GP G G D G P G +PG G
Sbjct: 826 ---KGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGH----------------QGE 866
Query: 143 LEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLA 202
+ PL +R G P P ++ P ED + + G FP PP PP +P
Sbjct: 867 MGPLGQR-GYPG-NPGIL--GPPGEDGV--IGMMG-FPGAIGPPGPPGNPGTPGQRGSPG 919
Query: 203 APHLQFQIAHCGQTTMHLQPGHPTPPP-TPVPSPHPAPAL-GAAGLPG-------PG--- 250
P ++ Q G G+P P + V P L G AG PG PG
Sbjct: 920 IPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPG 979
Query: 251 -SALKGL-GAAHP-----DLRASGGSG 270
LKGL G A P DL ++G G
Sbjct: 980 LKGLKGLPGPAGPPGPRGDLGSTGNPG 1006
Score = 28.5 bits (62), Expect = 9.7
Identities = 49/176 (27%), Positives = 59/176 (33%), Gaps = 49/176 (27%)
Query: 97 PTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALR 156
P G G+ +PG P G +PG AAG L + GAPA
Sbjct: 123 PGCSGSKGEQGFPGLPGTLGYPGIPG------------AAG--------LKGQKGAPA-- 160
Query: 157 PLVIKQEPREEDEAKQLALAGLFPYQPPPPPP--PSHPHPHPPPAHLAAP---------- 204
K+E E D L G Q P PP P P PP P
Sbjct: 161 ----KEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKG 216
Query: 205 HL-QFQIAHCGQTTMHLQPGHPTPPPTPV---PSPHPAPAL-------GAAGLPGP 249
H+ + I H G+ + G P PP T + P L GA G PGP
Sbjct: 217 HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 57.8 bits (138), Expect = 1e-08
Identities = 61/194 (31%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 92 KAAVGPTG----GGGGGDFDYPGAPAGPGGAVMPGGAHGP--PPGYGCAAAGYLDGRLEP 145
K GP G G GD PG P PG PG A GP PPGYG L G
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGS---PGPA-GPAGPPGYGPQGEPGLQGTQGV 632
Query: 146 LYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPH 205
GAP P E +L+++ P P PP PP HP P PP
Sbjct: 633 ----PGAPG--------PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG------ 674
Query: 206 LQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLG-AAHPDLR 264
+ + CG + G P P P P P P G G PG +L G P L
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPGIGFPGP-PGPK-GDQGFPGTKGSLGCPGKMGEPGLP 732
Query: 265 ASGGSGAGKAKKSV 278
G K + +V
Sbjct: 733 GKPGLPGAKGEPAV 746
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/259 (25%), Positives = 80/259 (30%), Gaps = 39/259 (15%)
Query: 8 EAEPRPPMSSH-LQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISA 66
+A PR P PP P + G GP P AP P G H I
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGI---- 1266
Query: 67 YIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTG-GGGGGDFDYPGAPAGPGGAVMPGGAH 125
+ + + GP G G GD PG PG +P G
Sbjct: 1267 -------------------KGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP-GPR 1306
Query: 126 GPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPP 185
G P G G +G P P+ K P + L + L P P P
Sbjct: 1307 GDPGFQGFPGVKGEKGN-PGFLGSIGPPG--PIGPKGPPGVRGDPGTLKIISL-PGSPGP 1362
Query: 186 PPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAG 245
P P P P P + CG +PG P TP P+ G+ G
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPG---NLGPCGPRG---KPGKDGKPGTPGPAGEKGNK-GSKG 1415
Query: 246 LPGPGSA--LKGLGAAHPD 262
PGP + L GL D
Sbjct: 1416 EPGPAGSDGLPGLKGKRGD 1434
Score = 37.0 bits (84), Expect = 0.027
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 36/190 (18%)
Query: 92 KAAVGPTGGGGG----------GDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDG 141
K +GP G G GD PG P GP GA P G GPP G +
Sbjct: 332 KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPP-GPRGARGPQGPSGPPGVPGSPGSSRPGL 390
Query: 142 RLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGL-----FPYQPPPPPPPSH----- 191
R P G P L+ ++ +D G P P PP PP
Sbjct: 391 RGAP-----GWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRK 445
Query: 192 --PHPHPPPAHLAAPHLQFQIAHCGQTTMHLQ--PGHPTPPPTP-VPSPHPAPAL----G 242
P H P +L +P + G+ + P P PP P +P H + G
Sbjct: 446 GPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQG 505
Query: 243 AAGLPG-PGS 251
AAGL G PGS
Sbjct: 506 AAGLKGSPGS 515
Score = 28.9 bits (63), Expect = 7.4
Identities = 69/267 (25%), Positives = 89/267 (33%), Gaps = 58/267 (21%)
Query: 23 PHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLF 82
P P + PRG P QP PP P G E ++
Sbjct: 779 PGTPGNEGLDGPRG-DPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGL----------- 825
Query: 83 QHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGR 142
+ Q+ + GP G G D G P G +PG G
Sbjct: 826 ---KGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGH----------------QGE 866
Query: 143 LEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLA 202
+ PL +R G P P ++ P ED + + G FP PP PP +P
Sbjct: 867 MGPLGQR-GYPG-NPGIL--GPPGEDGV--IGMMG-FPGAIGPPGPPGNPGTPGQRGSPG 919
Query: 203 APHLQFQIAHCGQTTMHLQPGHPTPPP-TPVPSPHPAPAL-GAAGLPG-------PG--- 250
P ++ Q G G+P P + V P L G AG PG PG
Sbjct: 920 IPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPG 979
Query: 251 -SALKGL-GAAHP-----DLRASGGSG 270
LKGL G A P DL ++G G
Sbjct: 980 LKGLKGLPGPAGPPGPRGDLGSTGNPG 1006
Score = 28.5 bits (62), Expect = 9.7
Identities = 49/176 (27%), Positives = 59/176 (33%), Gaps = 49/176 (27%)
Query: 97 PTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALR 156
P G G+ +PG P G +PG AAG L + GAPA
Sbjct: 123 PGCSGSKGEQGFPGLPGTLGYPGIPG------------AAG--------LKGQKGAPA-- 160
Query: 157 PLVIKQEPREEDEAKQLALAGLFPYQPPPPPP--PSHPHPHPPPAHLAAP---------- 204
K+E E D L G Q P PP P P PP P
Sbjct: 161 ----KEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKG 216
Query: 205 HL-QFQIAHCGQTTMHLQPGHPTPPPTPV---PSPHPAPAL-------GAAGLPGP 249
H+ + I H G+ + G P PP T + P L GA G PGP
Sbjct: 217 HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 57.8 bits (138), Expect = 1e-08
Identities = 61/194 (31%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 92 KAAVGPTG----GGGGGDFDYPGAPAGPGGAVMPGGAHGP--PPGYGCAAAGYLDGRLEP 145
K GP G G GD PG P PG PG A GP PPGYG L G
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGS---PGPA-GPAGPPGYGPQGEPGLQGTQGV 632
Query: 146 LYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPH 205
GAP P E +L+++ P P PP PP HP P PP
Sbjct: 633 ----PGAPG--------PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG------ 674
Query: 206 LQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLG-AAHPDLR 264
+ + CG + G P P P P P P G G PG +L G P L
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPGIGFPGP-PGPK-GDQGFPGTKGSLGCPGKMGEPGLP 732
Query: 265 ASGGSGAGKAKKSV 278
G K + +V
Sbjct: 733 GKPGLPGAKGEPAV 746
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/259 (25%), Positives = 80/259 (30%), Gaps = 39/259 (15%)
Query: 8 EAEPRPPMSSH-LQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISA 66
+A PR P PP P + G GP P AP P G H I
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGI---- 1266
Query: 67 YIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTG-GGGGGDFDYPGAPAGPGGAVMPGGAH 125
+ + + GP G G GD PG PG +P G
Sbjct: 1267 -------------------KGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP-GPR 1306
Query: 126 GPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPP 185
G P G G +G P P+ K P + L + L P P P
Sbjct: 1307 GDPGFQGFPGVKGEKGN-PGFLGSIGPPG--PIGPKGPPGVRGDPGTLKIISL-PGSPGP 1362
Query: 186 PPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAG 245
P P P P P + CG +PG P TP P+ G+ G
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPG---NLGPCGPRG---KPGKDGKPGTPGPAGEKGNK-GSKG 1415
Query: 246 LPGPGSA--LKGLGAAHPD 262
PGP + L GL D
Sbjct: 1416 EPGPAGSDGLPGLKGKRGD 1434
Score = 37.0 bits (84), Expect = 0.027
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 36/190 (18%)
Query: 92 KAAVGPTGGGGG----------GDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDG 141
K +GP G G GD PG P GP GA P G GPP G +
Sbjct: 332 KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPP-GPRGARGPQGPSGPPGVPGSPGSSRPGL 390
Query: 142 RLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGL-----FPYQPPPPPPPSH----- 191
R P G P L+ ++ +D G P P PP PP
Sbjct: 391 RGAP-----GWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRK 445
Query: 192 --PHPHPPPAHLAAPHLQFQIAHCGQTTMHLQ--PGHPTPPPTP-VPSPHPAPAL----G 242
P H P +L +P + G+ + P P PP P +P H + G
Sbjct: 446 GPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQG 505
Query: 243 AAGLPG-PGS 251
AAGL G PGS
Sbjct: 506 AAGLKGSPGS 515
Score = 28.9 bits (63), Expect = 7.4
Identities = 69/267 (25%), Positives = 89/267 (33%), Gaps = 58/267 (21%)
Query: 23 PHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLF 82
P P + PRG P QP PP P G E ++
Sbjct: 779 PGTPGNEGLDGPRG-DPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGL----------- 825
Query: 83 QHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGR 142
+ Q+ + GP G G D G P G +PG G
Sbjct: 826 ---KGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGH----------------QGE 866
Query: 143 LEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLA 202
+ PL +R G P P ++ P ED + + G FP PP PP +P
Sbjct: 867 MGPLGQR-GYPG-NPGIL--GPPGEDGV--IGMMG-FPGAIGPPGPPGNPGTPGQRGSPG 919
Query: 203 APHLQFQIAHCGQTTMHLQPGHPTPPP-TPVPSPHPAPAL-GAAGLPG-------PG--- 250
P ++ Q G G+P P + V P L G AG PG PG
Sbjct: 920 IPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPG 979
Query: 251 -SALKGL-GAAHP-----DLRASGGSG 270
LKGL G A P DL ++G G
Sbjct: 980 LKGLKGLPGPAGPPGPRGDLGSTGNPG 1006
Score = 28.5 bits (62), Expect = 9.7
Identities = 49/176 (27%), Positives = 59/176 (33%), Gaps = 49/176 (27%)
Query: 97 PTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALR 156
P G G+ +PG P G +PG AAG L + GAPA
Sbjct: 123 PGCSGSKGEQGFPGLPGTLGYPGIPG------------AAG--------LKGQKGAPA-- 160
Query: 157 PLVIKQEPREEDEAKQLALAGLFPYQPPPPPP--PSHPHPHPPPAHLAAP---------- 204
K+E E D L G Q P PP P P PP P
Sbjct: 161 ----KEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKG 216
Query: 205 HL-QFQIAHCGQTTMHLQPGHPTPPPTPV---PSPHPAPAL-------GAAGLPGP 249
H+ + I H G+ + G P PP T + P L GA G PGP
Sbjct: 217 HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 57.8 bits (138), Expect = 1e-08
Identities = 61/194 (31%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 92 KAAVGPTG----GGGGGDFDYPGAPAGPGGAVMPGGAHGP--PPGYGCAAAGYLDGRLEP 145
K GP G G GD PG P PG PG A GP PPGYG L G
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGS---PGPA-GPAGPPGYGPQGEPGLQGTQGV 632
Query: 146 LYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPH 205
GAP P E +L+++ P P PP PP HP P PP
Sbjct: 633 ----PGAPG--------PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG------ 674
Query: 206 LQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLG-AAHPDLR 264
+ + CG + G P P P P P P G G PG +L G P L
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPGIGFPGP-PGPK-GDQGFPGTKGSLGCPGKMGEPGLP 732
Query: 265 ASGGSGAGKAKKSV 278
G K + +V
Sbjct: 733 GKPGLPGAKGEPAV 746
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/259 (25%), Positives = 80/259 (30%), Gaps = 39/259 (15%)
Query: 8 EAEPRPPMSSH-LQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISA 66
+A PR P PP P + G GP P AP P G H I
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGI---- 1266
Query: 67 YIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTG-GGGGGDFDYPGAPAGPGGAVMPGGAH 125
+ + + GP G G GD PG PG +P G
Sbjct: 1267 -------------------KGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP-GPR 1306
Query: 126 GPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPP 185
G P G G +G P P+ K P + L + L P P P
Sbjct: 1307 GDPGFQGFPGVKGEKGN-PGFLGSIGPPG--PIGPKGPPGVRGDPGTLKIISL-PGSPGP 1362
Query: 186 PPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAG 245
P P P P P + CG +PG P TP P+ G+ G
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPG---NLGPCGPRG---KPGKDGKPGTPGPAGEKGNK-GSKG 1415
Query: 246 LPGPGSA--LKGLGAAHPD 262
PGP + L GL D
Sbjct: 1416 EPGPAGSDGLPGLKGKRGD 1434
Score = 37.0 bits (84), Expect = 0.027
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 36/190 (18%)
Query: 92 KAAVGPTGGGGG----------GDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDG 141
K +GP G G GD PG P GP GA P G GPP G +
Sbjct: 332 KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPP-GPRGARGPQGPSGPPGVPGSPGSSRPGL 390
Query: 142 RLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGL-----FPYQPPPPPPPSH----- 191
R P G P L+ ++ +D G P P PP PP
Sbjct: 391 RGAP-----GWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRK 445
Query: 192 --PHPHPPPAHLAAPHLQFQIAHCGQTTMHLQ--PGHPTPPPTP-VPSPHPAPAL----G 242
P H P +L +P + G+ + P P PP P +P H + G
Sbjct: 446 GPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQG 505
Query: 243 AAGLPG-PGS 251
AAGL G PGS
Sbjct: 506 AAGLKGSPGS 515
Score = 28.9 bits (63), Expect = 7.4
Identities = 69/267 (25%), Positives = 89/267 (33%), Gaps = 58/267 (21%)
Query: 23 PHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLF 82
P P + PRG P QP PP P G E ++
Sbjct: 779 PGTPGNEGLDGPRG-DPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGL----------- 825
Query: 83 QHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGR 142
+ Q+ + GP G G D G P G +PG G
Sbjct: 826 ---KGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGH----------------QGE 866
Query: 143 LEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLA 202
+ PL +R G P P ++ P ED + + G FP PP PP +P
Sbjct: 867 MGPLGQR-GYPG-NPGIL--GPPGEDGV--IGMMG-FPGAIGPPGPPGNPGTPGQRGSPG 919
Query: 203 APHLQFQIAHCGQTTMHLQPGHPTPPP-TPVPSPHPAPAL-GAAGLPG-------PG--- 250
P ++ Q G G+P P + V P L G AG PG PG
Sbjct: 920 IPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPG 979
Query: 251 -SALKGL-GAAHP-----DLRASGGSG 270
LKGL G A P DL ++G G
Sbjct: 980 LKGLKGLPGPAGPPGPRGDLGSTGNPG 1006
Score = 28.5 bits (62), Expect = 9.7
Identities = 49/176 (27%), Positives = 59/176 (33%), Gaps = 49/176 (27%)
Query: 97 PTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALR 156
P G G+ +PG P G +PG AAG L + GAPA
Sbjct: 123 PGCSGSKGEQGFPGLPGTLGYPGIPG------------AAG--------LKGQKGAPA-- 160
Query: 157 PLVIKQEPREEDEAKQLALAGLFPYQPPPPPP--PSHPHPHPPPAHLAAP---------- 204
K+E E D L G Q P PP P P PP P
Sbjct: 161 ----KEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKG 216
Query: 205 HL-QFQIAHCGQTTMHLQPGHPTPPPTPV---PSPHPAPAL-------GAAGLPGP 249
H+ + I H G+ + G P PP T + P L GA G PGP
Sbjct: 217 HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 56.2 bits (134), Expect = 4e-08
Identities = 53/177 (29%), Positives = 62/177 (35%), Gaps = 37/177 (20%)
Query: 80 DLFQHSRQQEKAKAAVGPTGGGG-----GGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCA 134
+L Q Q + + VG +G G G PGAP GP PG A GPPP
Sbjct: 581 NLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGAPQGP-----PGAASGPPPP---- 631
Query: 135 AAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHP 194
P LRP Q P + + L L P PPP S H
Sbjct: 632 -----------------GPILRP----QNPGANPQLRSLLLNPPPPQTGVPPPQASLHHL 670
Query: 195 HPP--PAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGP 249
PP PA L PH G +H P P P +P P L + G GP
Sbjct: 671 QPPGAPALLPPPHQGLGQPQLGPPLLHPPPAQSWPAQLPPRAPLPGQMLLSGGPRGP 727
Score = 38.1 bits (87), Expect = 0.012
Identities = 45/179 (25%), Positives = 59/179 (32%), Gaps = 39/179 (21%)
Query: 80 DLFQHSRQQEKAKAAVGPTGGGGG-----GDFDYPGAPAGPGGAVMPGGAHGPPPGYGCA 134
D+ Q R + V P GGG P PA P GA + P P
Sbjct: 212 DVSQDPRHMVLVRGLVLPVGGGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQPLPP---- 267
Query: 135 AAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP-YQPPPPPPPSHPH 193
+ P Y+ G + + + EA + AGL P + P P + P
Sbjct: 268 --------VPPQYQVPGNLSAAQVAAQNAV----EAAKNQKAGLGPRFSPITPLQQAAPG 315
Query: 194 PHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSA 252
PP + AP L P PP P P P P+L + PG G A
Sbjct: 316 VGPPFSQAPAPQLP-----------------PGPPGAPKPPPASQPSLVSTVAPGSGLA 357
Score = 35.8 bits (81), Expect = 0.061
Identities = 41/130 (31%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 151 GAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHP-HPPPAHLAAPHL--- 206
G A PL KQ A A P QP PP PP + P + A +AA +
Sbjct: 232 GGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEA 291
Query: 207 -QFQIAHCGQTTMHLQPGHPTPPPTPVP-SPHPAPALGAAGLPGPGSALKGLGAAHPDLR 264
+ Q A G + P P P S PAP L PGP A K A+ P L
Sbjct: 292 AKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPQLP----PGPPGAPKPPPASQPSLV 347
Query: 265 ASGGSGAGKA 274
++ G+G A
Sbjct: 348 STVAPGSGLA 357
Score = 34.3 bits (77), Expect = 0.18
Identities = 54/220 (24%), Positives = 75/220 (34%), Gaps = 52/220 (23%)
Query: 10 EPRPPMSSHLQSPPHAPSSAAFGFPRGAGPA-------QP-PAPPAAP----------EP 51
EP P + Q P H P G G A QP P PPAAP +P
Sbjct: 205 EPLQPPTDVSQDPRHMVLVRGLVLPVGGGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQP 264
Query: 52 LGGI-CEHETSIDISA-------YIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGG 103
L + +++ ++SA ++ A L F ++A VGP
Sbjct: 265 LPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAP 324
Query: 104 GDFDYPGAP----------------AGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLY 147
PG P PG + P G P G A G + G P
Sbjct: 325 APQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGGVSG---PSP 381
Query: 148 ERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPP 187
++GAPAL ++ K LA +G+ +Q P P
Sbjct: 382 AQLGAPAL-------GGQQSVSNKLLAWSGVLEWQEKPKP 414
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 55.5 bits (132), Expect = 7e-08
Identities = 54/177 (30%), Positives = 59/177 (33%), Gaps = 46/177 (25%)
Query: 85 SRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLE 144
S Q A AA G P PG A + G GP YG
Sbjct: 217 SCQMAAAAAAAAAAAAAAG--------PGSPGAAAVVKGLAGPAASYGP----------- 257
Query: 145 PLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHL--- 201
Y RV + AL P V+ L G P PPPP HPHPHP HL
Sbjct: 258 --YTRVQSMALPPGVVNSYN---------GLGG----PPAAPPPPPHPHPHPHAHHLHAA 302
Query: 202 -----AAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSAL 253
A PH GQ L P P P P+P AP L A P A+
Sbjct: 303 AAPPPAPPHHGAAAPPPGQ----LSPASPATAAPPAPAPTSAPGLQFACARQPELAM 355
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 53.9 bits (128), Expect = 2e-07
Identities = 50/192 (26%), Positives = 59/192 (30%), Gaps = 30/192 (15%)
Query: 94 AVGPTGGGGGGDFDYPGAPAGPGGAVMPGGA-------HGPPPGYGCAAAGYLDGRLE-- 144
A G GGGGGG G G GG + PG A G P + ++ G +
Sbjct: 26 AAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAAS 85
Query: 145 -------------PLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSH 191
A A E + +AG P QPP PPPP
Sbjct: 86 NGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAG-SPQQPPQPPPP-- 142
Query: 192 PHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGS 251
PP H G H P H PPP P HP GAA +
Sbjct: 143 ----PPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPG-GWGAAAAAAAAA 197
Query: 252 ALKGLGAAHPDL 263
A A P +
Sbjct: 198 AAAAAAAHLPSM 209
Score = 28.5 bits (62), Expect = 9.7
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 7 YEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPE 50
+ A P PP H Q PPH GAGP P + E
Sbjct: 276 HHAHPHPPHPHHAQGPPHHGGGGG-----GAGPGLNSHDPHSDE 314
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 53.9 bits (128), Expect = 2e-07
Identities = 55/224 (24%), Positives = 81/224 (36%), Gaps = 46/224 (20%)
Query: 35 RGAGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAA--------FNDEFLADLFQHSR 86
R G + P PP P P + E S+ PAA F ++ LA L Q +
Sbjct: 7 RYGGSSHYPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQ 66
Query: 87 QQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHG----------PPPGYGCAAA 136
+K V + P P VMPGG +G PPPG +
Sbjct: 67 MHQKQMQCVLQP--------HHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQ 118
Query: 137 GYLDGRLEPLY-ERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPH 195
+ + L+ +R G P L P+ ++ P + Y PPP PPPS+ +
Sbjct: 119 KQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSY---Y 175
Query: 196 PPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAP 239
PP + + +L P P+P +P + AP
Sbjct: 176 PPTS----------------SQPYLPPAQPSPSQSPPSQSYLAP 203
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 164 PREEDEAKQLALAGLFP----YQPPPP---PPPSHPHPHPPPAHLAAPHLQFQIAHCGQT 216
P+E + G++P Y+PPPP PP S P PPA + P
Sbjct: 1491 PQESRLQNTSSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSVP-----------V 1539
Query: 217 TMHLQPGHPTPPPTPVPSPHP 237
T P P PPP P+P P P
Sbjct: 1540 TRPPVPIPPPPPPPPLPPPPP 1560
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 27/159 (16%)
Query: 97 PTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCA-------AAGYLDGR------- 142
P G GG YP P P V A P PGY + ++G++ R
Sbjct: 3 PNWGRYGGSSHYPPPPVPPPPPVALPEA-SPGPGYSSSTTPAAPSSSGFMSFREQHLAQL 61
Query: 143 --LEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAH 200
L+ ++++ L+P + P + G +QPPPPP P PPP
Sbjct: 62 QQLQQMHQKQMQCVLQPHHLPPPPLPPPPV--MPGGGYGDWQPPPPPMP------PPPGP 113
Query: 201 LAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAP 239
+ Q Q H Q H + G P P + SP +P
Sbjct: 114 ALSYQKQQQYKH--QMLHHQRDGPPGLVPMELESPPESP 150
Score = 38.5 bits (88), Expect = 0.009
Identities = 31/90 (34%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 180 PYQPPPPPPPSHPHPHPPPAHL-----AAP-----------HL----QFQIAHCGQTTMH 219
P PPPPP + P P P + AAP HL Q Q H Q
Sbjct: 16 PPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCV 75
Query: 220 LQPGHPTPPPTPVPSPHPAPALGAAGLPGP 249
LQP H PPP P P P G P P
Sbjct: 76 LQPHHLPPPPLPPPPVMPGGGYGDWQPPPP 105
Score = 37.0 bits (84), Expect = 0.027
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 180 PYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAP 239
P PPP PPS P P PPA L + G P P PT VP P P
Sbjct: 531 PTMPPPVLPPSLPPPVMPPA------LPATVPPPGMP----PPVMPPSLPTSVPPPGMPP 580
Query: 240 ALGAAGLP 247
+L +AG P
Sbjct: 581 SLSSAGPP 588
Score = 32.7 bits (73), Expect = 0.51
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 25/82 (30%)
Query: 117 GAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALA 176
G P G++ PPP G + P R P RP V
Sbjct: 1504 GMYPPPGSYRPPPPMGKPPGSIVRPSAPPA--RSSVPVTRPPV----------------- 1544
Query: 177 GLFPYQPPPPPPPSHPHPHPPP 198
P PPPPP P P PPP
Sbjct: 1545 ------PIPPPPPPPPLPPPPP 1560
Score = 32.0 bits (71), Expect = 0.88
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 183 PPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPG-HPTPPPTPVPSPHPAPAL 241
PPP PPS PPP L P L + G + P T PP +P P + A
Sbjct: 574 PPPGMPPSLSSAGPPPV-LPPPSL----SSAGPPPVLPPPSLSSTAPPPVMPLPPLSSAT 628
Query: 242 GAAGLPGPG 250
G+P PG
Sbjct: 629 PPPGIPPPG 637
Score = 30.4 bits (67), Expect = 2.6
Identities = 43/150 (28%), Positives = 58/150 (38%), Gaps = 25/150 (16%)
Query: 150 VGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPP-----PPPPSHPHP----HPPPAH 200
V P + P + P L+ AG P PPP PPP P P PP
Sbjct: 573 VPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPG 632
Query: 201 LAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAA- 259
+ P + I Q T P + + VP P PAL LP P S G+A
Sbjct: 633 IPPPGVPQGIP--PQLTAAPVPPASSSQSSQVPE-KPRPAL----LPTPVS----FGSAP 681
Query: 260 ----HPDLRASGGSGAGKAKKSVDKNSNEY 285
HP L+++G S +K + K++ Y
Sbjct: 682 PTTYHPPLQSAGPSEQVNSKAPLSKSALPY 711
Score = 29.3 bits (64), Expect = 5.7
Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 144 EPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPP-----PPPPPSHPHPHPPP 198
EP+ E V PA + + P E+ P PP PP PP P P
Sbjct: 328 EPVKEEVTVPATSQ--VPESPSSEEP----------PLPPPNEEVPPPLPPEEPQSEDPE 375
Query: 199 AHLAAPHLQFQIAHCGQTTMH 219
LQ AH Q H
Sbjct: 376 EDARLKQLQAAAAHWQQHQQH 396
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 14/158 (8%)
Query: 186 PPPPSHPHPHPPPAHLAAP---HLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALG 242
PP +PH H PAH P H Q H + +H P H SPHP G
Sbjct: 146 PPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQT------SPHPPLHTG 199
Query: 243 AAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVR-RERNNIAVRKSRD 301
P + + +GG + ++ VD++ +E R + ERN A + R
Sbjct: 200 NQAQVSPATQQMQPTQTIQPPQPTGG----RRRRVVDEDPDERRRKFLERNRAAATRCRQ 255
Query: 302 KAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLR 339
K K + ++K ELT N +L+ V L E+ L+
Sbjct: 256 KRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQLK 293
>gi|59938774 cAMP responsive element binding protein 5 isoform beta
[Homo sapiens]
Length = 501
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 14/158 (8%)
Query: 186 PPPPSHPHPHPPPAHLAAP---HLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALG 242
PP +PH H PAH P H Q H + +H P H SPHP G
Sbjct: 278 PPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQT------SPHPPLHTG 331
Query: 243 AAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVR-RERNNIAVRKSRD 301
P + + +GG + ++ VD++ +E R + ERN A + R
Sbjct: 332 NQAQVSPATQQMQPTQTIQPPQPTGG----RRRRVVDEDPDERRRKFLERNRAAATRCRQ 387
Query: 302 KAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLR 339
K K + ++K ELT N +L+ V L E+ L+
Sbjct: 388 KRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQLK 425
>gi|59938772 cAMP responsive element binding protein 5 isoform gamma
[Homo sapiens]
Length = 475
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 14/158 (8%)
Query: 186 PPPPSHPHPHPPPAHLAAP---HLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALG 242
PP +PH H PAH P H Q H + +H P H SPHP G
Sbjct: 252 PPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQT------SPHPPLHTG 305
Query: 243 AAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVR-RERNNIAVRKSRD 301
P + + +GG + ++ VD++ +E R + ERN A + R
Sbjct: 306 NQAQVSPATQQMQPTQTIQPPQPTGG----RRRRVVDEDPDERRRKFLERNRAAATRCRQ 361
Query: 302 KAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLR 339
K K + ++K ELT N +L+ V L E+ L+
Sbjct: 362 KRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQLK 399
>gi|59938770 cAMP responsive element binding protein 5 isoform alpha
[Homo sapiens]
Length = 508
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 14/158 (8%)
Query: 186 PPPPSHPHPHPPPAHLAAP---HLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALG 242
PP +PH H PAH P H Q H + +H P H SPHP G
Sbjct: 285 PPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQT------SPHPPLHTG 338
Query: 243 AAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVR-RERNNIAVRKSRD 301
P + + +GG + ++ VD++ +E R + ERN A + R
Sbjct: 339 NQAQVSPATQQMQPTQTIQPPQPTGG----RRRRVVDEDPDERRRKFLERNRAAATRCRQ 394
Query: 302 KAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLR 339
K K + ++K ELT N +L+ V L E+ L+
Sbjct: 395 KRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQLK 432
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 52.4 bits (124), Expect = 6e-07
Identities = 72/305 (23%), Positives = 101/305 (33%), Gaps = 68/305 (22%)
Query: 12 RPPMSSHLQSPPHAPSSAAFGFP---------RGAGPAQPPAPPAAPEPLGGICEHETSI 62
RPP + + ++PP P A+ P GA P P PPA P H++
Sbjct: 387 RPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQS-- 444
Query: 63 DISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDF------DYPGAP---- 112
++P + D ++ A GP G G G +P AP
Sbjct: 445 -----VEPVVMMHMNIQD--SGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVV 497
Query: 113 -----------AGPGGAVMPGGAHGPPPGYGCAAAGYLDGR-----LEPLYERVGAPALR 156
+ PGG + G G G + A + G ++P+ G P +
Sbjct: 498 IARPTPPQARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQGTPGMA 557
Query: 157 P----LVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPH---------------PHPP 197
P + A A P QPPP P PS P
Sbjct: 558 PPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAG 617
Query: 198 PAHLAAPHLQFQI----AHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSAL 253
+ +A+P + + A T LQ PPP P P P P PA +P PGS
Sbjct: 618 GSGVASPTITVAMPGVPAFLQGMTDFLQATQTAPPPPP-PPPPPPPAPEQQTMPPPGSPS 676
Query: 254 KGLGA 258
G G+
Sbjct: 677 GGAGS 681
Score = 43.1 bits (100), Expect = 4e-04
Identities = 69/259 (26%), Positives = 89/259 (34%), Gaps = 56/259 (21%)
Query: 32 GFPRGAGPAQPPAPPAA-PEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEK 90
G P+ PP PPA PEP+ +TS + + P + A+ + +
Sbjct: 187 GGPQPQHSQPPPQPPAVTPEPVA--LSSQTSEPVESEAPP---REPMEAEEVEERAPAQN 241
Query: 91 AKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYL---DGRLEPL- 146
+ GP APAGP A + P P L + RL+P
Sbjct: 242 PELTPGP-------------APAGPTPAPETNAPNHPSPAEYVEVLQELQRLESRLQPFL 288
Query: 147 ---YERVGAPALRPLVIKQEPREEDE------AKQLALAG-LFPYQPP-----PPPPPSH 191
YE +GA A E REED+ + L L G F PP H
Sbjct: 289 QRYYEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRH 348
Query: 192 PHPHPPPAHLAAPHLQFQIAHCGQ----TTMHLQPGHPTPPPTP---VPSPHPAPALGAA 244
H P +H P + Q A Q TT+ + PPPTP P P P A A
Sbjct: 349 LHVVRPMSHYTTPMVLQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVA 408
Query: 245 -----------GLPGPGSA 252
G P PG A
Sbjct: 409 PSSTNVESSAEGAPPPGPA 427
Score = 32.3 bits (72), Expect = 0.67
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 182 QPPPPPPPSHPHP------HPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSP 235
QPPP PP P P P AP + A + Q TP P P P
Sbjct: 195 QPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPA-GP 253
Query: 236 HPAPALGAAGLPGPGSALKGL 256
PAP A P P ++ L
Sbjct: 254 TPAPETNAPNHPSPAEYVEVL 274
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 52.4 bits (124), Expect = 6e-07
Identities = 72/305 (23%), Positives = 101/305 (33%), Gaps = 68/305 (22%)
Query: 12 RPPMSSHLQSPPHAPSSAAFGFP---------RGAGPAQPPAPPAAPEPLGGICEHETSI 62
RPP + + ++PP P A+ P GA P P PPA P H++
Sbjct: 387 RPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQS-- 444
Query: 63 DISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDF------DYPGAP---- 112
++P + D ++ A GP G G G +P AP
Sbjct: 445 -----VEPVVMMHMNIQD--SGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVV 497
Query: 113 -----------AGPGGAVMPGGAHGPPPGYGCAAAGYLDGR-----LEPLYERVGAPALR 156
+ PGG + G G G + A + G ++P+ G P +
Sbjct: 498 IARPTPPQARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQGTPGMA 557
Query: 157 P----LVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPH---------------PHPP 197
P + A A P QPPP P PS P
Sbjct: 558 PPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAG 617
Query: 198 PAHLAAPHLQFQI----AHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSAL 253
+ +A+P + + A T LQ PPP P P P P PA +P PGS
Sbjct: 618 GSGVASPTITVAMPGVPAFLQGMTDFLQATQTAPPPPP-PPPPPPPAPEQQTMPPPGSPS 676
Query: 254 KGLGA 258
G G+
Sbjct: 677 GGAGS 681
Score = 43.1 bits (100), Expect = 4e-04
Identities = 69/259 (26%), Positives = 89/259 (34%), Gaps = 56/259 (21%)
Query: 32 GFPRGAGPAQPPAPPAA-PEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEK 90
G P+ PP PPA PEP+ +TS + + P + A+ + +
Sbjct: 187 GGPQPQHSQPPPQPPAVTPEPVA--LSSQTSEPVESEAPP---REPMEAEEVEERAPAQN 241
Query: 91 AKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYL---DGRLEPL- 146
+ GP APAGP A + P P L + RL+P
Sbjct: 242 PELTPGP-------------APAGPTPAPETNAPNHPSPAEYVEVLQELQRLESRLQPFL 288
Query: 147 ---YERVGAPALRPLVIKQEPREEDE------AKQLALAG-LFPYQPP-----PPPPPSH 191
YE +GA A E REED+ + L L G F PP H
Sbjct: 289 QRYYEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRH 348
Query: 192 PHPHPPPAHLAAPHLQFQIAHCGQ----TTMHLQPGHPTPPPTP---VPSPHPAPALGAA 244
H P +H P + Q A Q TT+ + PPPTP P P P A A
Sbjct: 349 LHVVRPMSHYTTPMVLQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVA 408
Query: 245 -----------GLPGPGSA 252
G P PG A
Sbjct: 409 PSSTNVESSAEGAPPPGPA 427
Score = 32.3 bits (72), Expect = 0.67
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 182 QPPPPPPPSHPHP------HPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSP 235
QPPP PP P P P AP + A + Q TP P P P
Sbjct: 195 QPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPA-GP 253
Query: 236 HPAPALGAAGLPGPGSALKGL 256
PAP A P P ++ L
Sbjct: 254 TPAPETNAPNHPSPAEYVEVL 274
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 52.4 bits (124), Expect = 6e-07
Identities = 72/305 (23%), Positives = 101/305 (33%), Gaps = 68/305 (22%)
Query: 12 RPPMSSHLQSPPHAPSSAAFGFP---------RGAGPAQPPAPPAAPEPLGGICEHETSI 62
RPP + + ++PP P A+ P GA P P PPA P H++
Sbjct: 387 RPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQS-- 444
Query: 63 DISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDF------DYPGAP---- 112
++P + D ++ A GP G G G +P AP
Sbjct: 445 -----VEPVVMMHMNIQD--SGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVV 497
Query: 113 -----------AGPGGAVMPGGAHGPPPGYGCAAAGYLDGR-----LEPLYERVGAPALR 156
+ PGG + G G G + A + G ++P+ G P +
Sbjct: 498 IARPTPPQARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQGTPGMA 557
Query: 157 P----LVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPH---------------PHPP 197
P + A A P QPPP P PS P
Sbjct: 558 PPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAG 617
Query: 198 PAHLAAPHLQFQI----AHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSAL 253
+ +A+P + + A T LQ PPP P P P P PA +P PGS
Sbjct: 618 GSGVASPTITVAMPGVPAFLQGMTDFLQATQTAPPPPP-PPPPPPPAPEQQTMPPPGSPS 676
Query: 254 KGLGA 258
G G+
Sbjct: 677 GGAGS 681
Score = 43.1 bits (100), Expect = 4e-04
Identities = 69/259 (26%), Positives = 89/259 (34%), Gaps = 56/259 (21%)
Query: 32 GFPRGAGPAQPPAPPAA-PEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEK 90
G P+ PP PPA PEP+ +TS + + P + A+ + +
Sbjct: 187 GGPQPQHSQPPPQPPAVTPEPVA--LSSQTSEPVESEAPP---REPMEAEEVEERAPAQN 241
Query: 91 AKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYL---DGRLEPL- 146
+ GP APAGP A + P P L + RL+P
Sbjct: 242 PELTPGP-------------APAGPTPAPETNAPNHPSPAEYVEVLQELQRLESRLQPFL 288
Query: 147 ---YERVGAPALRPLVIKQEPREEDE------AKQLALAG-LFPYQPP-----PPPPPSH 191
YE +GA A E REED+ + L L G F PP H
Sbjct: 289 QRYYEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRH 348
Query: 192 PHPHPPPAHLAAPHLQFQIAHCGQ----TTMHLQPGHPTPPPTP---VPSPHPAPALGAA 244
H P +H P + Q A Q TT+ + PPPTP P P P A A
Sbjct: 349 LHVVRPMSHYTTPMVLQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVA 408
Query: 245 -----------GLPGPGSA 252
G P PG A
Sbjct: 409 PSSTNVESSAEGAPPPGPA 427
Score = 32.3 bits (72), Expect = 0.67
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 182 QPPPPPPPSHPHP------HPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSP 235
QPPP PP P P P AP + A + Q TP P P P
Sbjct: 195 QPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPA-GP 253
Query: 236 HPAPALGAAGLPGPGSALKGL 256
PAP A P P ++ L
Sbjct: 254 TPAPETNAPNHPSPAEYVEVL 274
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 52.4 bits (124), Expect = 6e-07
Identities = 72/305 (23%), Positives = 101/305 (33%), Gaps = 68/305 (22%)
Query: 12 RPPMSSHLQSPPHAPSSAAFGFP---------RGAGPAQPPAPPAAPEPLGGICEHETSI 62
RPP + + ++PP P A+ P GA P P PPA P H++
Sbjct: 393 RPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQS-- 450
Query: 63 DISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDF------DYPGAP---- 112
++P + D ++ A GP G G G +P AP
Sbjct: 451 -----VEPVVMMHMNIQD--SGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVV 503
Query: 113 -----------AGPGGAVMPGGAHGPPPGYGCAAAGYLDGR-----LEPLYERVGAPALR 156
+ PGG + G G G + A + G ++P+ G P +
Sbjct: 504 IARPTPPQARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQGTPGMA 563
Query: 157 P----LVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPH---------------PHPP 197
P + A A P QPPP P PS P
Sbjct: 564 PPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAG 623
Query: 198 PAHLAAPHLQFQI----AHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSAL 253
+ +A+P + + A T LQ PPP P P P P PA +P PGS
Sbjct: 624 GSGVASPTITVAMPGVPAFLQGMTDFLQATQTAPPPPP-PPPPPPPAPEQQTMPPPGSPS 682
Query: 254 KGLGA 258
G G+
Sbjct: 683 GGAGS 687
Score = 43.1 bits (100), Expect = 4e-04
Identities = 69/259 (26%), Positives = 89/259 (34%), Gaps = 56/259 (21%)
Query: 32 GFPRGAGPAQPPAPPAA-PEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEK 90
G P+ PP PPA PEP+ +TS + + P + A+ + +
Sbjct: 193 GGPQPQHSQPPPQPPAVTPEPVA--LSSQTSEPVESEAPP---REPMEAEEVEERAPAQN 247
Query: 91 AKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYL---DGRLEPL- 146
+ GP APAGP A + P P L + RL+P
Sbjct: 248 PELTPGP-------------APAGPTPAPETNAPNHPSPAEYVEVLQELQRLESRLQPFL 294
Query: 147 ---YERVGAPALRPLVIKQEPREEDE------AKQLALAG-LFPYQPP-----PPPPPSH 191
YE +GA A E REED+ + L L G F PP H
Sbjct: 295 QRYYEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRH 354
Query: 192 PHPHPPPAHLAAPHLQFQIAHCGQ----TTMHLQPGHPTPPPTP---VPSPHPAPALGAA 244
H P +H P + Q A Q TT+ + PPPTP P P P A A
Sbjct: 355 LHVVRPMSHYTTPMVLQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVA 414
Query: 245 -----------GLPGPGSA 252
G P PG A
Sbjct: 415 PSSTNVESSAEGAPPPGPA 433
Score = 32.3 bits (72), Expect = 0.67
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 182 QPPPPPPPSHPHP------HPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSP 235
QPPP PP P P P AP + A + Q TP P P P
Sbjct: 201 QPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPA-GP 259
Query: 236 HPAPALGAAGLPGPGSALKGL 256
PAP A P P ++ L
Sbjct: 260 TPAPETNAPNHPSPAEYVEVL 280
>gi|205277421 Jun dimerization protein 2 isoform b [Homo sapiens]
Length = 174
Score = 52.4 bits (124), Expect = 6e-07
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 223 GHPTPPPTPVPSPHPAPALGAAGLPG-------PGSALKGLGAAHPDLRASG-------- 267
G P PP +P P P++ LPG P SAL + D+R G
Sbjct: 4 GWPATPPAMMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAPLHF 63
Query: 268 -----GSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDND 322
G K +D+ + RRE+N +A + R+K K+R Q++ L N
Sbjct: 64 LEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNA 123
Query: 323 RLRKRVEQLSRELDTL 338
L+ ++E+L +E L
Sbjct: 124 ELKTQIEELKQERQQL 139
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 52.0 bits (123), Expect = 8e-07
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 183 PPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGH-----------PTPPPTP 231
PPPPPPP P PH H Q +AH + PG P PPP P
Sbjct: 1627 PPPPPPPPAPGPH--LVQQPNSHQQHSVAHVVGPVHAVTPGSHIHSQTAGHHLPPPPPPP 1684
Query: 232 VPSPHPAPALGAAGLPGPGSALKGLGAAH 260
P+PH P P P + L+GL A H
Sbjct: 1685 GPAPHHHPP------PHPSTGLQGLQAQH 1707
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 183 PPPPPPPS-HPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPS 234
PPPPPPP PH HPPP H + Q H H+ P PPP P PS
Sbjct: 1678 PPPPPPPGPAPHHHPPP-HPSTGLQGLQAQH-----QHVVNSAPPPPPPPPPS 1724
Score = 37.4 bits (85), Expect = 0.021
Identities = 51/192 (26%), Positives = 57/192 (29%), Gaps = 71/192 (36%)
Query: 114 GPGGAVMPG--------GAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPR 165
GP AV PG G H PPP G P + G L
Sbjct: 1657 GPVHAVTPGSHIHSQTAGHHLPPPP---PPPGPAPHHHPPPHPSTGLQGL---------- 1703
Query: 166 EEDEAKQLALAGLFPYQPPPPPPPS--------------HPHPH------PPPAHLAAPH 205
+A+ + P PPPPPP S H PH P AH P
Sbjct: 1704 ---QAQHQHVVNSAPPPPPPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAHPTVPP 1760
Query: 206 LQFQIAHCGQTTM----------------------HLQPGHPTPPPTPVPS---PHPAPA 240
Q H TT+ HLQP P PTP S PHP
Sbjct: 1761 YPSQATH--HTTLGPGPQHQPSGTGPHCPLPVTGPHLQPQGPNSIPTPTASGFCPHPGSV 1818
Query: 241 LGAAGLPGPGSA 252
G+ GP A
Sbjct: 1819 ALPHGVQGPQQA 1830
Score = 33.1 bits (74), Expect = 0.39
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 39/104 (37%)
Query: 172 QLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTM------------- 218
Q +L P PPPPPP S + + P+ + Q + + QT
Sbjct: 1536 QQSLNSTAPPPPPPPPPSSSYYQNQQPSANFQNYNQLKGSLSQQTVFTSGPNQALPGTTS 1595
Query: 219 -------HLQPGH-------------------PTPPPTPVPSPH 236
H+ PGH P PPP P P PH
Sbjct: 1596 QQTVPGHHVTPGHFLPSQNPTIHHQTAAAVVPPPPPPPPAPGPH 1639
Score = 31.6 bits (70), Expect = 1.1
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 11 PRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPP--APPAAPEPLGGICEHETSIDISAYI 68
P PP SS L S H S+ A P GP P A P P P H T++
Sbjct: 1719 PPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAHPTVP-PYPSQATHHTTLGPGPQH 1777
Query: 69 DPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPP 128
P+ + Q + + PT G +PG+ A P G P A P
Sbjct: 1778 QPSGTGPHCPLPVTGPHLQPQGPNSIPTPT---ASGFCPHPGSVALPHGVQGPQQA-SPV 1833
Query: 129 PG 130
PG
Sbjct: 1834 PG 1835
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 52.0 bits (123), Expect = 8e-07
Identities = 66/252 (26%), Positives = 78/252 (30%), Gaps = 48/252 (19%)
Query: 12 RPPMSSHLQSPPHAPSSAAFG------------FPRGAGPAQP--PAPPAAPEPLGGICE 57
RPP S P P G PR A PA+ PAP E +
Sbjct: 426 RPPASEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPARSGSPAPETTNESVPFAQH 485
Query: 58 HETSIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTG-----GGGGGDFDYPGAP 112
I + FLA + + TG G G G P AP
Sbjct: 486 SSLDSRIEMLLKEQRSKFSFLASDTEEEEENSSMVLGARDTGSEVPSGSGHGPCTPPPAP 545
Query: 113 AG-----PGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREE 167
A P G+ PG P G A + E ++
Sbjct: 546 ANFEDVAPTGSGEPGATRESPKANGQNQASPCSSGDD-----------------MEISDD 588
Query: 168 DEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTP 227
D A P QPPPPPPP P PPP +LA+ L + H Q L P P
Sbjct: 589 DRGGSPPPAPTPPQQPPPPPPP----PPPPPPYLASLPLGYP-PH--QPAYLLPPRPDGP 641
Query: 228 PPTPVPSPHPAP 239
PP P P P P
Sbjct: 642 PPPEYPPPPPPP 653
Score = 32.3 bits (72), Expect = 0.67
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 27/112 (24%)
Query: 145 PLYERVGAPALRPLVIKQE-------PREEDEAKQLALAGLFPYQPPPPPP--------- 188
P+ ERV + PL ++ P EE A L P +PP PP
Sbjct: 1095 PVPERVAGSPVTPLPEQEASPARPAGPTEESPPS----APLRPPEPPAGPPAPAPRPDER 1150
Query: 189 PSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA 240
PS P P PP + F + + + P PP TP + P PA
Sbjct: 1151 PSSPIPLLPPPKKRRKTVSF-------SAIEVVPAPEPPPATPPQAKFPGPA 1195
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 163 EPREEDEAKQLALAGLFPYQPPP---PPPPSHPHPHPPPAHLAA------PHLQFQIAHC 213
E EDE ++ A L PPP P P P P P +A P + A
Sbjct: 1059 ESSSEDEEEEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARP 1118
Query: 214 GQTTMHLQPGHP-------TPPPTPVPSPHPAPALGAAGLPGP 249
T P P PP P P P P+ LP P
Sbjct: 1119 AGPTEESPPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLPPP 1161
Score = 30.0 bits (66), Expect = 3.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 8 EAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEP 51
EA P P +SPP AP P +PPA P AP P
Sbjct: 1112 EASPARPAGPTEESPPSAPLR----------PPEPPAGPPAPAP 1145
Score = 29.6 bits (65), Expect = 4.4
Identities = 50/189 (26%), Positives = 66/189 (34%), Gaps = 44/189 (23%)
Query: 97 PTGGGGGG-------DFDYPGAPAGPG--GAVMPGGAHGPPPGYGCAAAGYLDGRLEPLY 147
P GGGGGG + PA P G+ P + P A LD R+E L
Sbjct: 440 PGGGGGGGGPSPEREEVRTSPRPASPARSGSPAPETTNESVP---FAQHSSLDSRIEMLL 496
Query: 148 ERVGAPALRPLVIKQEPREEDEAKQLAL------------AGLFPYQPPPPPPP----SH 191
+ + + + + EE+E + L +G P PPP P +
Sbjct: 497 KEQRS---KFSFLASDTEEEEENSSMVLGARDTGSEVPSGSGHGPCTPPPAPANFEDVAP 553
Query: 192 PHPHPPPAHLAAPHL--QFQIAHCGQ-TTMHLQ--------PGHPTPP--PTPVPSPHPA 238
P A +P Q Q + C M + P PTPP P P P P P
Sbjct: 554 TGSGEPGATRESPKANGQNQASPCSSGDDMEISDDDRGGSPPPAPTPPQQPPPPPPPPPP 613
Query: 239 PALGAAGLP 247
P A LP
Sbjct: 614 PPPYLASLP 622
Score = 29.3 bits (64), Expect = 5.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 182 QPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCG 214
+PPPPPPP P + P + + + I + G
Sbjct: 1402 RPPPPPPPPPPRAYEPRSEFEQMTILYDIWNSG 1434
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 52.0 bits (123), Expect = 8e-07
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 183 PPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGH-----------PTPPPTP 231
PPPPPPP P PH H Q +AH + PG P PPP P
Sbjct: 1627 PPPPPPPPAPGPH--LVQQPNSHQQHSVAHVVGPVHAVTPGSHIHSQTAGHHLPPPPPPP 1684
Query: 232 VPSPHPAPALGAAGLPGPGSALKGLGAAH 260
P+PH P P P + L+GL A H
Sbjct: 1685 GPAPHHHPP------PHPSTGLQGLQAQH 1707
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 183 PPPPPPPS-HPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPS 234
PPPPPPP PH HPPP H + Q H H+ P PPP P PS
Sbjct: 1678 PPPPPPPGPAPHHHPPP-HPSTGLQGLQAQH-----QHVVNSAPPPPPPPPPS 1724
Score = 37.4 bits (85), Expect = 0.021
Identities = 51/192 (26%), Positives = 57/192 (29%), Gaps = 71/192 (36%)
Query: 114 GPGGAVMPG--------GAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPR 165
GP AV PG G H PPP G P + G L
Sbjct: 1657 GPVHAVTPGSHIHSQTAGHHLPPPP---PPPGPAPHHHPPPHPSTGLQGL---------- 1703
Query: 166 EEDEAKQLALAGLFPYQPPPPPPPS--------------HPHPH------PPPAHLAAPH 205
+A+ + P PPPPPP S H PH P AH P
Sbjct: 1704 ---QAQHQHVVNSAPPPPPPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAHPTVPP 1760
Query: 206 LQFQIAHCGQTTM----------------------HLQPGHPTPPPTPVPS---PHPAPA 240
Q H TT+ HLQP P PTP S PHP
Sbjct: 1761 YPSQATH--HTTLGPGPQHQPSGTGPHCPLPVTGPHLQPQGPNSIPTPTASGFCPHPGSV 1818
Query: 241 LGAAGLPGPGSA 252
G+ GP A
Sbjct: 1819 ALPHGVQGPQQA 1830
Score = 33.1 bits (74), Expect = 0.39
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 39/104 (37%)
Query: 172 QLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTM------------- 218
Q +L P PPPPPP S + + P+ + Q + + QT
Sbjct: 1536 QQSLNSTAPPPPPPPPPSSSYYQNQQPSANFQNYNQLKGSLSQQTVFTSGPNQALPGTTS 1595
Query: 219 -------HLQPGH-------------------PTPPPTPVPSPH 236
H+ PGH P PPP P P PH
Sbjct: 1596 QQTVPGHHVTPGHFLPSQNPTIHHQTAAAVVPPPPPPPPAPGPH 1639
Score = 31.6 bits (70), Expect = 1.1
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 11 PRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPP--APPAAPEPLGGICEHETSIDISAYI 68
P PP SS L S H S+ A P GP P A P P P H T++
Sbjct: 1719 PPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAHPTVP-PYPSQATHHTTLGPGPQH 1777
Query: 69 DPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPP 128
P+ + Q + + PT G +PG+ A P G P A P
Sbjct: 1778 QPSGTGPHCPLPVTGPHLQPQGPNSIPTPT---ASGFCPHPGSVALPHGVQGPQQA-SPV 1833
Query: 129 PG 130
PG
Sbjct: 1834 PG 1835
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 52.0 bits (123), Expect = 8e-07
Identities = 72/261 (27%), Positives = 96/261 (36%), Gaps = 59/261 (22%)
Query: 11 PRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHETSIDISAY--I 68
P PP PP P G P PP PP+AP S D S+
Sbjct: 5 PPPP-------PPLPPPPPPLGAP-------PPPPPSAPP---------VSTDTSSLRRA 41
Query: 69 DPAAFNDEFLADLFQHSRQQE----------KAKAAVGPTGGGGGGDFDYPGAPAGPG-G 117
DP LAD+ Q +R ++ + +++ G T GGG + GA P G
Sbjct: 42 DPKG-RSALLADIQQGTRLRKVTQINDRSAPQIESSKG-TNKEGGGSANTRGASTPPTLG 99
Query: 118 AVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALR------PLVIKQEPREEDEAK 171
+ GG P AG G+ R +P L PL+ PR + ++
Sbjct: 100 DLFAGGFPVLRPAGQRDVAGGKTGQGPG--SRAPSPRLPNKTISGPLIPPASPRLGNTSE 157
Query: 172 QLALAGLFPYQP-----PPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQP---- 222
A P +P PPP PP P P PPP ++P ++ G T P
Sbjct: 158 AHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAP 217
Query: 223 ----GHPTPPPTPVPSPHPAP 239
P PPP P P+P P P
Sbjct: 218 PVPCAPPPPPPPPPPTPPPLP 238
Score = 43.9 bits (102), Expect = 2e-04
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 152 APALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIA 211
+P PLV P + +A PPPPPPP P P PP + L+ ++ Q+A
Sbjct: 194 SPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLA 253
Query: 212 ---------------HCGQTTMHLQPGHPT-----PPPTPVPSPHPAPALGAAGLPGP 249
CG + +P P PP P P P A A LP P
Sbjct: 254 PLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAP 311
Score = 33.5 bits (75), Expect = 0.30
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 225 PTPPPTPVPSPHPAPALGAAGLPGPGS 251
P PPP P P P P P LGA P P +
Sbjct: 2 PVPPPPPPPLPPPPPPLGAPPPPPPSA 28
Score = 33.1 bits (74), Expect = 0.39
Identities = 60/257 (23%), Positives = 70/257 (27%), Gaps = 46/257 (17%)
Query: 13 PPMSSHLQSPPHAPSSAAFGFPRGAGPAQPP-APPAAPEPLGGICEHETSIDISAYIDPA 71
PP S L + A +A PR PA PP PP P PL + I P
Sbjct: 146 PPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPG 205
Query: 72 AFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVMPGGAHGPP-PG 130
G P P P P PP P
Sbjct: 206 PLTK--------------------------GNLPVVAPPVPCAPPPPPPPPPPTPPPLPP 239
Query: 131 YGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPP- 189
+ + +L PL+ P L L P + E A P PPPP PP
Sbjct: 240 ASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPPAPPPPLPPY 299
Query: 190 -------SHPHPH----------PPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPV 232
S P P PPP +P Q G + P P P
Sbjct: 300 ASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPAPPAPPGSQPFLQ 359
Query: 233 PSPHPAPALGAAGLPGP 249
H P G L P
Sbjct: 360 KKRHGRPGAGGGKLNPP 376
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 183 PPPPPPPSHPHP----HPPPAHLAAP 204
PPPPPPP P P PPP +AP
Sbjct: 4 PPPPPPPLPPPPPPLGAPPPPPPSAP 29
Score = 29.6 bits (65), Expect = 4.4
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 21/70 (30%)
Query: 184 PPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGA 243
P PPPP P P PPP L AP P PPP+ P +L
Sbjct: 2 PVPPPPPPPLP-PPPPPLGAP--------------------PPPPPSAPPVSTDTSSLRR 40
Query: 244 AGLPGPGSAL 253
A G + L
Sbjct: 41 ADPKGRSALL 50
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 11 PRPPM----SSHLQSPPHAPSSAAF-GFPRGAGPAQPPAPPAAP 49
P PP+ SS PP P S +F P+ AG PAPPA P
Sbjct: 309 PAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPAPPAPP 352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,309,098
Number of Sequences: 37866
Number of extensions: 1774277
Number of successful extensions: 40336
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 1422
Number of HSP's that attempted gapping in prelim test: 14947
Number of HSP's gapped (non-prelim): 14203
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.