Search of human proteins with 28395049

Search of human proteins with 28395049

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28395049 mitochondrial COX18 [Homo sapiens]
         (333 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28395049 mitochondrial COX18 [Homo sapiens]                        671   0.0  
gi|223718097 oxidase (cytochrome c) assembly 1-like [Homo sapiens]     99   5e-21
gi|153945852 G7c protein [Homo sapiens]                                38   0.011
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]            28   8.7  
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ...    28   8.7  
gi|56090582 immunity-related GTPase family, Q [Homo sapiens]           28   8.7  

>gi|28395049 mitochondrial COX18 [Homo sapiens]
          Length = 333

 Score =  671 bits (1730), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MLCRLGGRWLRPLPALQLWARDLPLAPVPTSGAKRPTLPVWAVAPVSAVHANGWYEALAA 60
           MLCRLGGRWLRPLPALQLWARDLPLAPVPTSGAKRPTLPVWAVAPVSAVHANGWYEALAA
Sbjct: 1   MLCRLGGRWLRPLPALQLWARDLPLAPVPTSGAKRPTLPVWAVAPVSAVHANGWYEALAA 60

Query: 61  SSPVRVAEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQPEIK 120
           SSPVRVAEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQPEIK
Sbjct: 61  SSPVRVAEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQPEIK 120

Query: 121 TIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPM 180
           TIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPM
Sbjct: 121 TIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPM 180

Query: 181 WIFMSFALRNLSTGAAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLLIVE 240
           WIFMSFALRNLSTGAAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLLIVE
Sbjct: 181 WIFMSFALRNLSTGAAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLLIVE 240

Query: 241 ICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPG 300
           ICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPG
Sbjct: 241 ICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPG 300

Query: 301 FRQLCRIPSTKSDSETPYKDIFAAFNTKFISRK 333
           FRQLCRIPSTKSDSETPYKDIFAAFNTKFISRK
Sbjct: 301 FRQLCRIPSTKSDSETPYKDIFAAFNTKFISRK 333


>gi|223718097 oxidase (cytochrome c) assembly 1-like [Homo sapiens]
          Length = 495

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 58  LAASSPVRVAEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQP 117
           L + +PV + + +L  +H   GLPWWG+I   TV  R  +  PL        A++ N  P
Sbjct: 176 LGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFAR-CLIFPLIVTGQREAARIHNHLP 234

Query: 118 EIKTIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQ 177
           EI+  +  + +E  +  + + + K  + +   +    +  +LY        K  +L   Q
Sbjct: 235 EIQKFSSRI-REAKLAGDHIEYYKASSEMALYQKKHGI--KLY--------KPLILPVTQ 283

Query: 178 LPMWIFMSFALRNLSTGAAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLL 237
            P++I    ALR ++     S        L TGG+ WF DLT  D  +ILP++V      
Sbjct: 284 APIFISFFIALREMANLPVPS--------LQTGGLWWFQDLTVSDPIYILPLAVTATMWA 335

Query: 238 IVEICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLR 297
           ++E+ A   +  S  Q ++   +R M ++ +PI    P+++ +YWL S+   L Q   LR
Sbjct: 336 VLELGAETGVQSSDLQ-WMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLR 394

Query: 298 SPGFRQLCRIP 308
            P  R + +IP
Sbjct: 395 IPAVRTVLKIP 405


>gi|153945852 G7c protein [Homo sapiens]
          Length = 891

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 6   GGRWLRPLPALQLWARDLPLAPVPTSGAKRPTLPVWAVAPVSAVHANGWYEALAASSPVR 65
           GGR   P+P    + R L  AP P     R T P  +  P+          A  A SP  
Sbjct: 809 GGREANPVPPTHAFLRLLVSAPAPQD---RHTTPTGSSDPILTT-------ATPAFSPFT 858

Query: 66  VAEEVLLGVHAATGLPWWGSI 86
           +  +   G   A G PWWG++
Sbjct: 859 LVTQGRAGAGLAAGSPWWGTV 879


>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 19  WARDLPLAPVPTS------GAKRPTLPVWAVAPVSAVHANGWYEAL 58
           W   LP  P P +       A R     WA  P   V   GW+EAL
Sbjct: 165 WVGGLPRPPAPAALRLLLPPAPRRRARSWACGPGWEVRGKGWWEAL 210


>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
           sapiens]
          Length = 217

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 19  WARDLPLAPVPTS------GAKRPTLPVWAVAPVSAVHANGWYEAL 58
           W   LP  P P +       A R     WA  P   V   GW+EAL
Sbjct: 165 WVGGLPRPPAPAALRLLLPPAPRRRARSWACGPGWEVRGKGWWEAL 210


>gi|56090582 immunity-related GTPase family, Q [Homo sapiens]
          Length = 623

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 23  LPLAPVPTSGAKRPTLPVWAVAPVSAVHANGWYEALAASSPVRVAEEVLLGVHAATGLPW 82
           +P AP P    +RP + +W V P+   H      A AAS P      +L+   A T   W
Sbjct: 257 VPTAPTPFPAPERPNVVLWTV-PLG--HTGTATTAAAASHPTHYDALILVTPGAPTEKDW 313


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,323,357
Number of Sequences: 37866
Number of extensions: 519786
Number of successful extensions: 1751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 7
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.