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Search of human proteins with 27436873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436873 SNF2 histone linker PHD RING helicase isoform b
[Homo sapiens]
(1659 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 3361 0.0
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 3355 0.0
gi|40807471 transcription termination factor, RNA polymerase II ... 113 1e-24
gi|21071052 helicase-like transcription factor [Homo sapiens] 111 7e-24
gi|21071054 helicase-like transcription factor [Homo sapiens] 111 7e-24
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 79 3e-14
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 74 9e-13
gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo s... 69 3e-11
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 69 4e-11
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 68 8e-11
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 67 1e-10
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 66 2e-10
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 65 7e-10
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 65 7e-10
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 64 1e-09
gi|4557565 excision repair cross-complementing rodent repair def... 64 2e-09
gi|38708321 INO80 complex homolog 1 [Homo sapiens] 63 2e-09
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 62 4e-09
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 62 6e-09
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 62 6e-09
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 62 6e-09
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 61 8e-09
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 61 1e-08
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 61 1e-08
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 61 1e-08
gi|4885377 histone cluster 1, H1d [Homo sapiens] 60 1e-08
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 60 1e-08
gi|4885381 histone cluster 1, H1b [Homo sapiens] 59 4e-08
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 58 7e-08
gi|4885379 histone cluster 1, H1e [Homo sapiens] 57 1e-07
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 3361 bits (8714), Expect = 0.0
Identities = 1659/1659 (100%), Positives = 1659/1659 (100%)
Query: 1 MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60
MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS
Sbjct: 1 MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60
Query: 61 LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120
LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT
Sbjct: 61 LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120
Query: 121 LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180
LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS
Sbjct: 121 LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180
Query: 181 FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240
FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL
Sbjct: 181 FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240
Query: 241 MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL
Sbjct: 241 MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
Query: 301 IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP
Sbjct: 301 IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
Query: 361 NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420
NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK
Sbjct: 361 NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420
Query: 421 LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480
LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR
Sbjct: 421 LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480
Query: 481 SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540
SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK
Sbjct: 481 SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540
Query: 541 SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600
SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH
Sbjct: 541 SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600
Query: 601 CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660
CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE
Sbjct: 601 CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660
Query: 661 CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720
CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI
Sbjct: 661 CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720
Query: 721 ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780
ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN
Sbjct: 721 ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780
Query: 781 YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG
Sbjct: 781 YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
Query: 841 INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL
Sbjct: 841 INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
Query: 901 WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960
WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS
Sbjct: 901 WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960
Query: 961 SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020
SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK
Sbjct: 961 SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020
Query: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080
CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA
Sbjct: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080
Query: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140
THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL
Sbjct: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140
Query: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200
QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ
Sbjct: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200
Query: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260
MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK
Sbjct: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260
Query: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320
LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE
Sbjct: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320
Query: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380
FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV
Sbjct: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380
Query: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440
LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA
Sbjct: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440
Query: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500
RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA
Sbjct: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500
Query: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560
NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA
Sbjct: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560
Query: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620
QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG
Sbjct: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620
Query: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSIYI 1659
RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSIYI
Sbjct: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSIYI 1659
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 3355 bits (8699), Expect = 0.0
Identities = 1656/1656 (100%), Positives = 1656/1656 (100%)
Query: 1 MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60
MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS
Sbjct: 1 MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60
Query: 61 LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120
LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT
Sbjct: 61 LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120
Query: 121 LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180
LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS
Sbjct: 121 LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180
Query: 181 FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240
FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL
Sbjct: 181 FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240
Query: 241 MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL
Sbjct: 241 MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
Query: 301 IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP
Sbjct: 301 IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
Query: 361 NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420
NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK
Sbjct: 361 NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420
Query: 421 LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480
LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR
Sbjct: 421 LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480
Query: 481 SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540
SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK
Sbjct: 481 SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540
Query: 541 SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600
SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH
Sbjct: 541 SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600
Query: 601 CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660
CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE
Sbjct: 601 CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660
Query: 661 CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720
CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI
Sbjct: 661 CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720
Query: 721 ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780
ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN
Sbjct: 721 ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780
Query: 781 YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG
Sbjct: 781 YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
Query: 841 INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL
Sbjct: 841 INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
Query: 901 WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960
WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS
Sbjct: 901 WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960
Query: 961 SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020
SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK
Sbjct: 961 SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020
Query: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080
CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA
Sbjct: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080
Query: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140
THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL
Sbjct: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140
Query: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200
QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ
Sbjct: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200
Query: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260
MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK
Sbjct: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260
Query: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320
LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE
Sbjct: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320
Query: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380
FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV
Sbjct: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380
Query: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440
LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA
Sbjct: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440
Query: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500
RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA
Sbjct: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500
Query: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560
NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA
Sbjct: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560
Query: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620
QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG
Sbjct: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620
Query: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERS 1656
RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERS
Sbjct: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERS 1656
>gi|40807471 transcription termination factor, RNA polymerase II [Homo
sapiens]
Length = 1162
Score = 113 bits (283), Expect = 1e-24
Identities = 95/337 (28%), Positives = 148/337 (43%), Gaps = 44/337 (13%)
Query: 714 STRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYD 773
++ TLII P+S+ H W +E+ + V S+ LRV +Y G +D + L+ DIVI TY
Sbjct: 640 TSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDS--RARVLSTYDIVITTYS 697
Query: 774 VLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAE 833
++ E+ +N ++ +PL+ + W RI LDEA V+ P V+ +
Sbjct: 698 LVAKEIP------TNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSI 751
Query: 834 MAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLY 893
+L RW ++GTP+Q L D++ L+ FL P+ + W R KK + L
Sbjct: 752 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLW-RSQVDNGSKKGGERL- 809
Query: 894 SFIAKILWRSAKKDVIDQ-----IQIPPQTEEIHWLHFSPVERHFYH------------- 935
S + K L KD +D + +P + ++H L S E Y+
Sbjct: 810 SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 869
Query: 936 -RQHEV-CCQDVVVKLRKISDWALKLSSLD----------RRTVTSILYPLLRLRQACCH 983
++HE Q S AL+ S + R + IL LLRLRQ CCH
Sbjct: 870 LKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCH 929
Query: 984 PQAVRGEFLPLQKSFEQSTFS----FSTMTMEELLTS 1016
++ P++ E S S +T+ EL S
Sbjct: 930 LSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDS 966
Score = 76.3 bits (186), Expect = 2e-13
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 1513 STKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RVKTFQ 1569
STK+ +++ L IQ K+++ S W ++L +++ L + + +A I K
Sbjct: 990 STKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRM 1049
Query: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTK 1629
+ + AF ++L+ L G GL + H+ L++ NP+ E QA R++R+GQ K
Sbjct: 1050 DLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQK 1109
Query: 1630 PTIVHRFLIKATIEERM 1646
++HRF+ + T+EE++
Sbjct: 1110 DVVIHRFVCEGTVEEKI 1126
Score = 43.5 bits (101), Expect = 0.002
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 27/104 (25%)
Query: 319 ECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGC----IIREYPNS--GPQLL----- 367
+C+R + +H +W+ +TSE + + C ++ E P P LL
Sbjct: 521 QCYRGH-TNQDHVHAVWK--ITSEAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQA 577
Query: 368 -------------GGILADEMGLGKTVEVLALILTHTRQDVKQD 398
GGILAD+MGLGKT+ ++ALILT Q+ K++
Sbjct: 578 LAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEE 621
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 111 bits (277), Expect = 7e-24
Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774
R TLII P S+ W+D+ +H++S L VY G D +P L++QDIV+ TY++
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533
Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
L H G SPL ++ W R+ LDE + P + +
Sbjct: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572
Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891
L RW ++GTP+Q L+DL+ L+ FL ++P+ + WW R + RP + +
Sbjct: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632
Query: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
L S I I R K I +++P + I + S ER Y V +
Sbjct: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689
Query: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983
R ++ + D +L LLRLRQ CCH
Sbjct: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718
Score = 94.4 bits (233), Expect = 8e-19
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Query: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
E C IC L + C H FC CI +I+ + + KC +CR +
Sbjct: 758 EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811
Query: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
E A + E+ ++ + S+K+ A++ L ++ ++P K+LV S + L +I L
Sbjct: 812 CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
Query: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605
+ F AQ RV++ Q + P I+LL L G GL + A+ V L
Sbjct: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929
Query: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
++P NPA E Q R HR+GQ + I+ +F++K ++EE M
Sbjct: 930 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970
Score = 52.8 bits (125), Expect = 3e-06
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328
+ D+L+ +K+ TH+ E A+ L P+Q++A+ WM+ +E + P
Sbjct: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262
Query: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
W + LYYN T ++ P + + GGILAD+MGLGKT+ +A+IL
Sbjct: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309
Query: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416
T+ D LP +V + Y
Sbjct: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 111 bits (277), Expect = 7e-24
Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774
R TLII P S+ W+D+ +H++S L VY G D +P L++QDIV+ TY++
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533
Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
L H G SPL ++ W R+ LDE + P + +
Sbjct: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572
Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891
L RW ++GTP+Q L+DL+ L+ FL ++P+ + WW R + RP + +
Sbjct: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632
Query: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
L S I I R K I +++P + I + S ER Y V +
Sbjct: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689
Query: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983
R ++ + D +L LLRLRQ CCH
Sbjct: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718
Score = 94.4 bits (233), Expect = 8e-19
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Query: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
E C IC L + C H FC CI +I+ + + KC +CR +
Sbjct: 758 EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811
Query: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
E A + E+ ++ + S+K+ A++ L ++ ++P K+LV S + L +I L
Sbjct: 812 CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
Query: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605
+ F AQ RV++ Q + P I+LL L G GL + A+ V L
Sbjct: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929
Query: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
++P NPA E Q R HR+GQ + I+ +F++K ++EE M
Sbjct: 930 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970
Score = 52.8 bits (125), Expect = 3e-06
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328
+ D+L+ +K+ TH+ E A+ L P+Q++A+ WM+ +E + P
Sbjct: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262
Query: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
W + LYYN T ++ P + + GGILAD+MGLGKT+ +A+IL
Sbjct: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309
Query: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416
T+ D LP +V + Y
Sbjct: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 79.3 bits (194), Expect = 3e-14
Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF----QENLSAFKRDPQIN 1582
+LRD G + LVFS + +L+II + L + + + +I T ++ ++ F+++ +
Sbjct: 471 RLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYS 530
Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
+ LL G GLT+ AT V++ +P NPA + QA+ RV+RIGQ + +V+R + T+
Sbjct: 531 VFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTV 590
Query: 1643 EERM 1646
EE++
Sbjct: 591 EEKI 594
Score = 45.8 bits (107), Expect = 3e-04
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQ--DIVIITYDVLR 776
L+I P+++ + WV E + + +RV + G KD + +Q ++I TY +L
Sbjct: 149 LLIMPTNLINTWVKEFIKW--TPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLI 206
Query: 777 SELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQ 836
+ N + R Q+ W + LDEA ++ + K+A A+
Sbjct: 207 N----------NWQQLSSFRGQE-----------FVWDYVILDEAHKIKTSSTKSAICAR 245
Query: 837 RLSGINRWCISGTPVQRGLEDLFGLVVF 864
+ NR ++GTP+Q L++L+ L F
Sbjct: 246 AIPASNRLLLTGTPIQNNLQELWSLFDF 273
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 368 GGILADEMGLGKTVEVLALI 387
GGILAD+MGLGKTV+++A +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 74.3 bits (181), Expect = 9e-13
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQE---NLSAFKRDPQINI 1583
+L+ G K L+FS +LDI+ + F+++ ++ E N+ +F DP++ I
Sbjct: 610 ELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFI 669
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
L+ G G+ + A V++ + NP +LQA R HRIGQTKP +V+R + TI+
Sbjct: 670 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 729
Query: 1644 ERM 1646
+++
Sbjct: 730 QKI 732
Score = 36.6 bits (83), Expect = 0.21
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Query: 351 YTGCIIREYPNSGPQLL--------GGILADEMGLGKTVEVLALI 387
+TG ++R Y G + L GILADEMGLGKTV+ +A I
Sbjct: 218 FTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATI 262
Score = 36.2 bits (82), Expect = 0.27
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 813 WWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPY-- 870
W + +DE ++ + +R + N+ ++GTP+Q L +L+ L+ FL + +
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 407
Query: 871 --CVKHWW--------VRLLYRPYCKKNPQH-LYSFIAKILWRSAKKDVIDQIQIPPQTE 919
+ W+ + ++N H L+ + L R K DV +++PP+ E
Sbjct: 408 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDV--ALEVPPKRE 465
Query: 920 EIHWLHFSPVERHFY 934
+ + S + FY
Sbjct: 466 VVVYAPLSKKQEIFY 480
>gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
sapiens]
Length = 1079
Score = 69.3 bits (168), Expect = 3e-11
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 1520 VRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFK 1576
V+ +K+ L++ K LVF+ +L ++A+ +N + +I + E + + F+
Sbjct: 326 VKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQ 385
Query: 1577 RDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRF 1636
+DP + +L + GLT A+HV+ E +P H QA R HRIGQ +H
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYL 445
Query: 1637 LIKATIEERMQAML 1650
+ T++ M ML
Sbjct: 446 IANGTLDTLMWGML 459
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 68.9 bits (167), Expect = 4e-11
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 1534 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF------QENLSAFKRDPQINILLLP 1587
+ L+F + +LDI+ L ++ R+ +S F DP I++LLL
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705
Query: 1588 LHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQ 1647
H G GL + A V+ VE NP +LQA+ R HRIGQ + V+R + + T+EE++
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 1648 AMLK 1651
+ K
Sbjct: 1766 GLQK 1769
Score = 60.8 bits (146), Expect = 1e-08
Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 49/288 (17%)
Query: 718 TLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRS 777
+L++ P ++ WVDE+ + L L Y G + H + ++++ +YDV+R+
Sbjct: 1329 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 1388
Query: 778 ELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQR 837
++++ RN K I LDE +++ K ++ ++
Sbjct: 1389 DIDF-------------FRNIKFNYCI-------------LDEGHVIKNGKTKLSKAVKQ 1422
Query: 838 LSGINRWCISGTPVQRGLEDLFGLV-----VFLGIEPYCVKHWWVRLLYRPYCKKNPQH- 891
L+ R +SGTP+Q + +L+ L FLG E + +L + + +
Sbjct: 1423 LTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQ 1482
Query: 892 ---------LYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYH---RQHE 939
L+ + L R K+DV+ +PP+ + ++ SP++ Y +
Sbjct: 1483 EAGVLAMDALHRQVLPFLLRRMKEDVLQ--DLPPKIIQDYYCTLSPLQVQLYEDFAKSRA 1540
Query: 940 VCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
C D V +S+ + + + L LR+ C HP V
Sbjct: 1541 KCDVDETVSSATLSE---ETEKPKLKATGHVFQALQYLRKLCNHPALV 1585
Score = 31.2 bits (69), Expect = 8.7
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 40/186 (21%)
Query: 332 HFLWREIVTSEGLKLYYNPYT-GCIIREYPNSGPQLLG--------GILADEMGLGKTVE 382
HFL +++ + L+ Y P +R+Y G L GIL D+MGLGKT++
Sbjct: 1242 HFL-EQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQ 1300
Query: 383 VLALIL---THTRQDVKQ----DALTLPEGKVVNYFIPSHYFG--GKLKKTEIQNIEFEP 433
+ ++ H Q+ + + + LP V + H+ GK E N P
Sbjct: 1301 SICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLN----P 1356
Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLK---CL 490
P R+ + VK N + YDV RN R +K C+
Sbjct: 1357 LHYTGPPTERIRLQHQVKRHN--------------LIVASYDVVRNDIDFFRNIKFNYCI 1402
Query: 491 IFEGLV 496
+ EG V
Sbjct: 1403 LDEGHV 1408
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 67.8 bits (164), Expect = 8e-11
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Query: 1510 GSHSTKVEAVVRTLMKI--QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKT 1567
GS K + L K+ +LRD G + L+FS +LD++ L ++ +I T
Sbjct: 1016 GSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGIT 1075
Query: 1568 F---QENLSAFKRD-PQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1623
QE + F Q LL G G+ + A V++ + NP +++QA R H
Sbjct: 1076 GGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAH 1135
Query: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651
RIGQ K +++RF+ +A++EER+ + K
Sbjct: 1136 RIGQNKKVMIYRFVTRASVEERITQVAK 1163
Score = 41.6 bits (96), Expect = 0.006
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 32/234 (13%)
Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
L ++EW + +DEA ++ K + + ++GTP+Q LE+LF L+ FL
Sbjct: 836 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 895
Query: 868 EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
E + ++ + + L+ + + R K DV +P +TE I + S
Sbjct: 896 ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 953
Query: 928 PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHP--- 984
+++ +Y + R L+S S+L ++ L++ C HP
Sbjct: 954 QMQKKYYK----------FILTRNFE----ALNSKGGGNQVSLLNIMMDLKKCCNHPYLF 999
Query: 985 --QAVRGEFLPLQKSFEQSTF---SFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
AV LP S++ S+ S M ++++L L+ +E HR L+
Sbjct: 1000 PVAAVEAPVLP-NGSYDGSSLVKSSGKLMLLQKMLKKLR-------DEGHRVLI 1045
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 67.4 bits (163), Expect = 1e-10
Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 28/276 (10%)
Query: 1396 LLNDKAVATSQLQKKLGQLLY--LTNLEKS--------QDKTSGGVNPEPCPICARQLGK 1445
L K + QL KK +++Y LT+ +K+ +D T + EPC + Q +
Sbjct: 380 LRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRR 439
Query: 1446 QWAVLTCGHCFCNECISIIIEQY-----SVGSHRSSIKCAIC--RQTTSHKEI-SYVFTS 1497
T H E + + Y V +H + ++ A +Q T K I VF+
Sbjct: 440 NCCYKTNSH---GETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSR 496
Query: 1498 --EKANQEEDIPVKGSHSTKVEAVVRTLMKI--QLRDPGAKALVFSTWQDVLDIISKALT 1553
+ + +D + K ++ L ++ R K L+FS +LD++ +
Sbjct: 497 FPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCM 556
Query: 1554 DNNMEFAQISRVKTFQENLSA---FKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPIL 1610
+ +++ ++ +E L F +NI L+ G GL + A V+L +P
Sbjct: 557 ASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTW 616
Query: 1611 NPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
NPA++LQAI R +RIGQ + V R + T+EE M
Sbjct: 617 NPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
Score = 45.8 bits (107), Expect = 3e-04
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 43/170 (25%)
Query: 711 EPVSTRAT---LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDI 767
EP+S+ A LI++P S+ + W DE++ RV V G +KD L + +I
Sbjct: 201 EPLSSTAKKMFLIVAPLSVLYNWKDELDTW---GYFRVTVLHGNRKDNELIRVKQRKCEI 257
Query: 768 VIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECP 827
+ TY+ LR L+ L ++EW + +DEA ++ P
Sbjct: 258 ALTTYETLRLCLD--------------------------ELNSLEWSAVIVDEAHRIKNP 291
Query: 828 TVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWV 877
+ E+ + L R ++GT +Q +++L +CV W V
Sbjct: 292 KARVTEVMKALKCNVRIGLTGTILQNNMKEL-----------WCVMDWAV 330
Score = 34.7 bits (78), Expect = 0.79
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 14/63 (22%)
Query: 350 PYT-GCIIREYPNSGPQLLGG--------ILADEMGLGKTVEVLALILT-----HTRQDV 395
PYT +R+Y G + L G IL D+MGLGKTV+V++ + TR+D+
Sbjct: 127 PYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDI 186
Query: 396 KQD 398
+ +
Sbjct: 187 ENN 189
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 66.2 bits (160), Expect = 2e-10
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSAFKRDPQIN---- 1582
+L++ G++ L+FS VLDI+ N E+ ++ E + + N
Sbjct: 494 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF 553
Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
+ +L G G+ + A V+L + NP +LQA+ R HRIGQTK V RF+ T+
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 1643 EERM--QAMLKTAERSIYI 1659
EER+ +A +K SI I
Sbjct: 614 EERIVERAEMKLRLDSIVI 632
Score = 60.5 bits (145), Expect = 1e-08
Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 48/308 (15%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFL-AEQDIVIITYDVLRS 777
+++ P S H W+ E R V + L+ ++ F++ L E D+ + +Y++L
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 778 ELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQR 837
E S W + +DEA ++ K +E+ +
Sbjct: 293 E--------------------------KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 326
Query: 838 LSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC---KKNPQHLYS 894
NR ++GTP+Q L +L+ L+ FL + + + C +K + L+
Sbjct: 327 FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHM 386
Query: 895 FIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISD 954
+ L R K DV + +PP+ E ++ S ++R +Y R + +D+ +
Sbjct: 387 VLRPFLLRRIKADV--EKSLPPKKEVKIYVGLSKMQREWYTR---ILMKDIDI------- 434
Query: 955 WALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG--EFLPLQKSFEQSTFSFSTMTMEE 1012
L+S + +L L++LR+ C HP G P T S + +++
Sbjct: 435 ----LNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDK 490
Query: 1013 LLTSLQKK 1020
LL L+++
Sbjct: 491 LLPKLKEQ 498
Score = 34.3 bits (77), Expect = 1.0
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 367 LGGILADEMGLGKTVEVLALI--LTHTRQDVKQDALTLPEGKVVNY 410
+ GILADEMGLGKT++ ++L+ + H R + +P+ + N+
Sbjct: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNW 244
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 64.7 bits (156), Expect = 7e-10
Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 50/277 (18%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVK--KDGFLQPHFL-AEQDIVIITYDVL 775
+++ P S H W++E R V SLRV+ + G K + F++ + E D+ + +Y+++
Sbjct: 236 MVLVPKSTLHNWMNEFKRWV--PSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMV 293
Query: 776 RSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMA 835
E + H W + +DEA ++ K +E+
Sbjct: 294 IKEKSVFKKFH--------------------------WRYLVIDEAHRIKNEKSKLSEIV 327
Query: 836 QRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC---KKNPQHL 892
+ NR ++GTP+Q L +L+ L+ FL + + + C +K + L
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387
Query: 893 YSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKI 952
++ + L R K DV + +PP+ E +L S ++R +Y + + +D+ V
Sbjct: 388 HAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLSKMQREWYTK---ILMKDIDV----- 437
Query: 953 SDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG 989
L+S + +L L++LR+ C HP G
Sbjct: 438 ------LNSSGKMDKMRLLNILMQLRKCCNHPYLFDG 468
Score = 64.3 bits (155), Expect = 9e-10
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 1511 SHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQE 1570
S+S K+ + + L K L++ G++ L+FS +LDI+ E+ ++ +E
Sbjct: 483 SNSGKMVVLDKLLAK--LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 1571 NLSAFKRDPQIN----ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIG 1626
A + N I +L G G+ + A V+L + NP +LQA+ R HRIG
Sbjct: 541 REEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 600
Query: 1627 QTKPTIVHRFLIKATIEERM--QAMLKTAERSIYI 1659
Q KP V R + T+EER+ +A +K SI I
Sbjct: 601 QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 635
Score = 35.8 bits (81), Expect = 0.36
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 367 LGGILADEMGLGKTVEVLALI--LTHTRQDVKQDALTLPEGKVVNY 410
+ GILADEMGLGKT++ +AL+ L H R + +P+ + N+
Sbjct: 202 VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 247
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 64.7 bits (156), Expect = 7e-10
Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 50/277 (18%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVK--KDGFLQPHFL-AEQDIVIITYDVL 775
+++ P S H W++E R V SLRV+ + G K + F++ + E D+ + +Y+++
Sbjct: 236 MVLVPKSTLHNWMNEFKRWV--PSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMV 293
Query: 776 RSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMA 835
E + H W + +DEA ++ K +E+
Sbjct: 294 IKEKSVFKKFH--------------------------WRYLVIDEAHRIKNEKSKLSEIV 327
Query: 836 QRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC---KKNPQHL 892
+ NR ++GTP+Q L +L+ L+ FL + + + C +K + L
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387
Query: 893 YSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKI 952
++ + L R K DV + +PP+ E +L S ++R +Y + + +D+ V
Sbjct: 388 HAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLSKMQREWYTK---ILMKDIDV----- 437
Query: 953 SDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG 989
L+S + +L L++LR+ C HP G
Sbjct: 438 ------LNSSGKMDKMRLLNILMQLRKCCNHPYLFDG 468
Score = 58.5 bits (140), Expect = 5e-08
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 1511 SHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQE 1570
S+S K+ + + L K L++ G++ L+FS +LDI+ E+ ++ +E
Sbjct: 483 SNSGKMVVLDKLLAK--LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 1571 NLSAFKRDPQIN----------------ILLLPLHTGSNGLTIIEATHVLLVEPILNPAH 1614
F + I +L G G+ + A V+L + NP
Sbjct: 541 REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600
Query: 1615 ELQAIGRVHRIGQTKPTIVHRFLIKATIEERM--QAMLKTAERSIYI 1659
+LQA+ R HRIGQ KP V R + T+EER+ +A +K SI I
Sbjct: 601 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 647
Score = 35.8 bits (81), Expect = 0.36
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 367 LGGILADEMGLGKTVEVLALI--LTHTRQDVKQDALTLPEGKVVNY 410
+ GILADEMGLGKT++ +AL+ L H R + +P+ + N+
Sbjct: 202 VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 247
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 63.9 bits (154), Expect = 1e-09
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 1528 LRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSAFKR----DPQINI 1583
L++ G + L+FS +LD++ L ++ +I T A R Q
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFC 1121
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
LL G G+ + A V++ + NP +++QA R HRIGQ K +++RF+ +A++E
Sbjct: 1122 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Query: 1644 ERMQAMLK 1651
ER+ + K
Sbjct: 1182 ERITQVAK 1189
Score = 41.6 bits (96), Expect = 0.006
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
L +++W + +DEA ++ K + S ++ ++GTP+Q LE+LF L+ FL
Sbjct: 862 LGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTP 921
Query: 868 EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
E + ++ + + L+ + + R K DV +P +TE I + S
Sbjct: 922 ERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFK--NMPSKTELIVRVELS 979
Query: 928 PVERHFY 934
P+++ +Y
Sbjct: 980 PMQKKYY 986
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 63.5 bits (153), Expect = 2e-09
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 1519 VVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAF 1575
VV +L+KI + G + L+FS + +LDI+ L + ++ T Q ++ +
Sbjct: 843 VVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRY 901
Query: 1576 KRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHR 1635
D I + LL G G+ + A V++ +P NP+ + QA R RIGQ K V+R
Sbjct: 902 NEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 961
Query: 1636 FLIKATIEERM 1646
L TIEE++
Sbjct: 962 LLTAGTIEEKI 972
Score = 43.9 bits (102), Expect = 0.001
Identities = 59/290 (20%), Positives = 111/290 (38%), Gaps = 62/290 (21%)
Query: 718 TLIISPSSICHQWVDEINRHVRSSSLRVLVYQGV---KKDGFLQPHFLAEQDIVIITYDV 774
T+I+ P+++ HQWV E + + +L G KK+ ++ V + +
Sbjct: 569 TVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRD--------VAHCHGI 620
Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
L + +Y+ + + RY +W + LDE + P
Sbjct: 621 LITSYSYIRLMQDDIS---------RY----------DWHYVILDEGHKIRNPNAAVTLA 661
Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVF-----LGIEPYCVKHWWVRLLYRPYCKKNP 889
++ +R +SG+P+Q L +L+ L F LG P ++ + V + Y +P
Sbjct: 662 CKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASP 721
Query: 890 QH----------LYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHE 939
L I L R K DV + +P + E++ + + + Y Q+
Sbjct: 722 VQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVY--QNF 779
Query: 940 VCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG 989
V ++V +I + +++ S L+ LR+ C HP G
Sbjct: 780 VDSKEVY----RILNGEMQIFS-----------GLIALRKICNHPDLFSG 814
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 365 QLLGGILADEMGLGKTVEVLALI 387
Q GGIL DEMGLGKT++++A +
Sbjct: 524 QQAGGILGDEMGLGKTIQIIAFL 546
>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
Length = 1556
Score = 63.2 bits (152), Expect = 2e-09
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINI 1583
+L+ G + L++S ++D++ + + + ++ S++ ++ ++ F+ I +
Sbjct: 1112 RLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFV 1171
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
LL G G+ + A V+ + NP + QA+ R HR+GQTK V+R + K TIE
Sbjct: 1172 FLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIE 1231
Query: 1644 ERM 1646
ER+
Sbjct: 1232 ERI 1234
Score = 43.5 bits (101), Expect = 0.002
Identities = 56/287 (19%), Positives = 117/287 (40%), Gaps = 57/287 (19%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKD-----GFLQPHFLAEQD----IVI 769
LIISP+S + W E R V +VL Y G D F L QD +VI
Sbjct: 571 LIISPASTLNNWHQEFTRFV--PKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 628
Query: 770 ITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTV 829
+Y ++ ++ Y V+W + LDEAQ ++ +
Sbjct: 629 TSYQLVVQDVKYFQ--------------------------RVKWQYMVLDEAQALKSSSS 662
Query: 830 KAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYC----VKHWWVRLLYRPYC 885
++ + NR ++GTP+Q + +L+ L+ F+ + W+ + +
Sbjct: 663 VRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAE 722
Query: 886 KKNP------QHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHR-QH 938
K+ L+ + + R KKDV + ++ + E + + + ++ Y ++
Sbjct: 723 NKSAIDENQLSRLHMILKPFMLRRIKKDV--ENELSDKIEILMYCQLTSRQKLLYQALKN 780
Query: 939 EVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQ 985
++ +D++ ++ + + T +S++ +++ R+ C HP+
Sbjct: 781 KISIEDLLQS-------SMGSTQQAQNTTSSLMNLVMQFRKVCNHPE 820
Score = 35.0 bits (79), Expect = 0.61
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 365 QLLGGILADEMGLGKTVEVLALI 387
Q + GILADEMGLGKTV+ +AL+
Sbjct: 535 QGINGILADEMGLGKTVQSIALL 557
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 62.4 bits (150), Expect = 4e-09
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RVKTFQENLSAFKRDPQINI 1583
+LR+ G + L+FS +LDI+++ LT + F ++ + + ++ L F D +
Sbjct: 802 RLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF 861
Query: 1584 -LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
LL G G+ + A V++ + NP ++LQA R HRIGQ K ++R + K T+
Sbjct: 862 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 921
Query: 1643 EERM 1646
EE +
Sbjct: 922 EEEI 925
Score = 36.6 bits (83), Expect = 0.21
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
L ++ W + +DEA ++ + +R I+GTP+Q L++L+ L+ F+
Sbjct: 606 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 665
Query: 868 EPYCVKHWWVRLL--YRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLH 925
E + +W + + Q L+ + L R KKDV + +P + E+I +
Sbjct: 666 EKF---EFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQILRVE 720
Query: 926 FSPVERHFY 934
S +++ +Y
Sbjct: 721 MSALQKQYY 729
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 61.6 bits (148), Expect = 6e-09
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAFKRD-PQIN 1582
+L++ G + L+FS +LD++ L ++ +I T QE + F Q
Sbjct: 1071 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1130
Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
LL G G+ + A V++ + NP +++QA R HRIGQ +++RF+ +A++
Sbjct: 1131 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1190
Query: 1643 EERMQAMLK 1651
EER+ + K
Sbjct: 1191 EERITQVAK 1199
Score = 40.0 bits (92), Expect = 0.019
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 16/226 (7%)
Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
L ++ W + +DEA ++ K + ++ ++GTP+Q LE+LF L+ FL
Sbjct: 872 LGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTP 931
Query: 868 EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
E + ++ + + L+ + + R K DV +P +TE I + S
Sbjct: 932 ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 989
Query: 928 PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
P+++ +Y + R L+S S+L ++ L++ C HP
Sbjct: 990 PMQKKYYK----------YILTRNFE----ALNSRGGGNQVSLLNIMMDLKKCCNHPYLF 1035
Query: 988 RGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
+ K + + + L LQK E+ HR L+
Sbjct: 1036 PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1081
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 61.6 bits (148), Expect = 6e-09
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAFKRD-PQIN 1582
+L++ G + L+FS +LD++ L ++ +I T QE + F Q
Sbjct: 1071 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1130
Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
LL G G+ + A V++ + NP +++QA R HRIGQ +++RF+ +A++
Sbjct: 1131 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1190
Query: 1643 EERMQAMLK 1651
EER+ + K
Sbjct: 1191 EERITQVAK 1199
Score = 40.0 bits (92), Expect = 0.019
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 16/226 (7%)
Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
L ++ W + +DEA ++ K + ++ ++GTP+Q LE+LF L+ FL
Sbjct: 872 LGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTP 931
Query: 868 EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
E + ++ + + L+ + + R K DV +P +TE I + S
Sbjct: 932 ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 989
Query: 928 PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
P+++ +Y + R L+S S+L ++ L++ C HP
Sbjct: 990 PMQKKYYK----------YILTRNFE----ALNSRGGGNQVSLLNIMMDLKKCCNHPYLF 1035
Query: 988 RGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
+ K + + + L LQK E+ HR L+
Sbjct: 1036 PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1081
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 61.6 bits (148), Expect = 6e-09
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAFKRD-PQIN 1582
+L++ G + L+FS +LD++ L ++ +I T QE + F Q
Sbjct: 1130 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1189
Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
LL G G+ + A V++ + NP +++QA R HRIGQ +++RF+ +A++
Sbjct: 1190 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1249
Query: 1643 EERMQAMLK 1651
EER+ + K
Sbjct: 1250 EERITQVAK 1258
Score = 40.0 bits (92), Expect = 0.019
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 16/226 (7%)
Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
L ++ W + +DEA ++ K + ++ ++GTP+Q LE+LF L+ FL
Sbjct: 931 LGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTP 990
Query: 868 EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
E + ++ + + L+ + + R K DV +P +TE I + S
Sbjct: 991 ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 1048
Query: 928 PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
P+++ +Y + R L+S S+L ++ L++ C HP
Sbjct: 1049 PMQKKYYK----------YILTRNFE----ALNSRGGGNQVSLLNIMMDLKKCCNHPYLF 1094
Query: 988 RGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
+ K + + + L LQK E+ HR L+
Sbjct: 1095 PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1140
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 61.2 bits (147), Expect = 8e-09
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINI 1583
QL+ G + L+F+ +LD++ + LT + + ++ +RV+ Q + F D +I
Sbjct: 2054 QLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFC 2113
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
+L +G G+ + A V+ + NP + QA R HRIGQT+ ++R + + T+E
Sbjct: 2114 FILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVE 2173
Query: 1644 ERM 1646
E +
Sbjct: 2174 ENI 2176
Score = 38.9 bits (89), Expect = 0.042
Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 66/308 (21%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKD------GFLQPHFLAEQDIVIITY 772
LII P+S+ W E+ R S ++L Y G +K+ G+ +P+ + I +Y
Sbjct: 671 LIIVPTSVMLNWEMELKRWC--PSFKILTYYGAQKERKLKRQGWTKPNAF---HVCITSY 725
Query: 773 DVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAA 832
++ +D + R + W + LDEAQ ++ +
Sbjct: 726 KLVL-------------QDHQAFRRKN-------------WRYLILDEAQNIKNFKSQRW 759
Query: 833 EMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYC----VKHWWVRLL------YR 882
+ + R ++GTP+Q L +L+ L+ FL + K W+ L +
Sbjct: 760 QSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQ 819
Query: 883 PYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCC 942
Y + + L+ + L R K DV + Q+P + E + S +R Y
Sbjct: 820 EYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHVIRCRLSKRQRCLY-------- 869
Query: 943 QDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQST 1002
D + + +L S++ L++LR+ C HP + P+ F
Sbjct: 870 DDFMAQ-------TTTKETLATGHFMSVINILMQLRKVCNHPNLF--DPRPVTSPFITPG 920
Query: 1003 FSFSTMTM 1010
FST ++
Sbjct: 921 ICFSTASL 928
Score = 35.4 bits (80), Expect = 0.46
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 8/40 (20%)
Query: 356 IREYPNSG--------PQLLGGILADEMGLGKTVEVLALI 387
+REY + G + L GILADEMGLGKT++ ++L+
Sbjct: 618 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLL 657
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 60.8 bits (146), Expect = 1e-08
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFKRDPQINI 1583
+L+ G + ++FS + +LDI+ L + + ++ E + F D I +
Sbjct: 867 ELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFV 926
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
LL G G+ + A V+L + NP ++ QA R HR+GQTK +V + + + TIE
Sbjct: 927 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 986
Query: 1644 ERM 1646
E M
Sbjct: 987 ESM 989
Score = 43.1 bits (100), Expect = 0.002
Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 59/269 (21%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG----FLQPHFLAEQDIVIITYDV 774
LI+ P+S W+ E+N + +L+VL Y G +++ F + ++++ TY+
Sbjct: 549 LIVVPASTIDNWLREVN--LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606
Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
S +S+D R K AI DE M++ +
Sbjct: 607 AIS----------SSDDRSLFRRLKLNYAI-------------FDEGHMLKNMGSIRYQH 643
Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRP----------Y 884
++ NR ++GTPVQ L +L L+ F+ + +R ++ Y
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 885 CKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY---------- 934
K+ H I + R K++V+ Q+PP+ + I S + Y
Sbjct: 704 EKERIAHAKQIIKPFILRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKS 761
Query: 935 ------HRQHEVCCQDVVVKLRKISDWAL 957
+ E+C +V+++LRK+++ L
Sbjct: 762 INNLVTEKNTEMC--NVMMQLRKMANHPL 788
Score = 34.3 bits (77), Expect = 1.0
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 367 LGGILADEMGLGKTVEVLALI 387
L GILADEMGLGKT++ +A +
Sbjct: 516 LNGILADEMGLGKTIQAIAFL 536
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 60.8 bits (146), Expect = 1e-08
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFKRDPQINI 1583
+L+ G + ++FS + +LDI+ L + + ++ E + F D I +
Sbjct: 865 ELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFV 924
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
LL G G+ + A V+L + NP ++ QA R HR+GQTK +V + + + TIE
Sbjct: 925 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 984
Query: 1644 ERM 1646
E M
Sbjct: 985 ESM 987
Score = 43.9 bits (102), Expect = 0.001
Identities = 57/267 (21%), Positives = 107/267 (40%), Gaps = 57/267 (21%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG----FLQPHFLAEQDIVIITYDV 774
LI+ P+S W+ E+N + +L+VL Y G +++ F + ++++ TY+
Sbjct: 549 LIVVPASTIDNWLREVN--LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606
Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
S +S+D R K AI DE M++ +
Sbjct: 607 AIS----------SSDDRSLFRRLKLNYAI-------------FDEGHMLKNMGSIRYQH 643
Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRP----------Y 884
++ NR ++GTPVQ L +L L+ F+ + +R ++ Y
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 885 CKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY---------- 934
K+ H I + R K++V+ Q+PP+ + I S + Y
Sbjct: 704 EKERIAHAKQIIKPFILRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKS 761
Query: 935 ----HRQHEVCCQDVVVKLRKISDWAL 957
+ E+C +V+++LRK+++ L
Sbjct: 762 INNLEKNTEMC--NVMMQLRKMANHPL 786
Score = 34.3 bits (77), Expect = 1.0
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 367 LGGILADEMGLGKTVEVLALI 387
L GILADEMGLGKT++ +A +
Sbjct: 516 LNGILADEMGLGKTIQAIAFL 536
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 60.8 bits (146), Expect = 1e-08
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFKRDPQINI 1583
+L+ G + ++FS + +LDI+ L + + ++ E + F D I +
Sbjct: 867 ELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFV 926
Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
LL G G+ + A V+L + NP ++ QA R HR+GQTK +V + + + TIE
Sbjct: 927 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 986
Query: 1644 ERM 1646
E M
Sbjct: 987 ESM 989
Score = 43.1 bits (100), Expect = 0.002
Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 59/269 (21%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG----FLQPHFLAEQDIVIITYDV 774
LI+ P+S W+ E+N + +L+VL Y G +++ F + ++++ TY+
Sbjct: 549 LIVVPASTIDNWLREVN--LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606
Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
S +S+D R K AI DE M++ +
Sbjct: 607 AIS----------SSDDRSLFRRLKLNYAI-------------FDEGHMLKNMGSIRYQH 643
Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRP----------Y 884
++ NR ++GTPVQ L +L L+ F+ + +R ++ Y
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 885 CKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY---------- 934
K+ H I + R K++V+ Q+PP+ + I S + Y
Sbjct: 704 EKERIAHAKQIIKPFILRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKS 761
Query: 935 ------HRQHEVCCQDVVVKLRKISDWAL 957
+ E+C +V+++LRK+++ L
Sbjct: 762 INNLVTEKNTEMC--NVMMQLRKMANHPL 788
Score = 34.3 bits (77), Expect = 1.0
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 367 LGGILADEMGLGKTVEVLALI 387
L GILADEMGLGKT++ +A +
Sbjct: 516 LNGILADEMGLGKTIQAIAFL 536
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 60.5 bits (145), Expect = 1e-08
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFE 493
K K PP +I AV + GVS+ ++ K +++ YDV++N S +K LK L+ +
Sbjct: 33 KRKASGPPVSELITKAVAASKERSGVSLAALKKALAAA-GYDVEKNNSRIKLGLKSLVSK 91
Query: 494 GLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRK 533
G + Q KG G SG+F L K + K KK PRK
Sbjct: 92 GTLVQTKGTGASGSFKLNKKAASGEGKPKAKKAGAAKPRK 131
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 60.5 bits (145), Expect = 1e-08
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 1510 GSHSTKVEAVVRTLMKIQ--LRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKT 1567
G H T+ + L K+ L G + L+FS +LDI+ + + ++
Sbjct: 339 GDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVR 398
Query: 1568 FQENLSAFKRDPQ--INILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRI 1625
+E A K Q I + LL G G+ + A V+ V+ NP ++LQA R HRI
Sbjct: 399 GEERHLAIKNFGQQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 458
Query: 1626 GQTKPTIVHRFLIKATIEE 1644
GQ K V R + + T+EE
Sbjct: 459 GQNKSVKVIRLIGRDTVEE 477
Score = 40.8 bits (94), Expect = 0.011
Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 40/224 (17%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQD---IVIITYDVL 775
LI+ P S+ W +E+ R + L + Y G K++ L ++ +++ TY++
Sbjct: 99 LILCPLSVLSNWKEEMQRF--APGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEIC 156
Query: 776 RSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMA 835
+ ++ L + W + +DEA ++ + +
Sbjct: 157 LKDASF--------------------------LKSFPWSVLVVDEAHRLKNQSSLLHKTL 190
Query: 836 QRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC-----KKNPQ 890
S + ++GTP+Q L++L+ L+ F +EP V + Y ++
Sbjct: 191 SEFSVVFSLLLTGTPIQNSLQELYSLLSF--VEPDLFSKEEVGDFIQRYQDIEKESESAS 248
Query: 891 HLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY 934
L+ + L R K +V ++P +TE + + S +++ +Y
Sbjct: 249 ELHKLLQPFLLRRVKAEV--ATELPKKTEVVIYHGMSALQKKYY 290
Score = 31.6 bits (70), Expect = 6.7
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 352 TGCIIREYPNSGPQLL--------GGILADEMGLGKTVEVLALIL 388
TG +R Y G L G IL DEMGLGKT + +AL +
Sbjct: 42 TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFI 86
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 58.9 bits (141), Expect = 4e-08
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFE 493
K K PP +I AV + G+S+ ++ K +++ YDV++N S +K LK L+ +
Sbjct: 35 KRKATGPPVSELITKAVAASKERNGLSLAALKKALAA-GGYDVEKNNSRIKLGLKSLVSK 93
Query: 494 GLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRKSGNKDTDSEYLPS 553
G + Q KG G SG+F L K + K KK +K T K K ++
Sbjct: 94 GTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVK 153
Query: 554 DTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKS 589
T K+++ + KK+ S KK K+
Sbjct: 154 KTPK----------KAKKPAAAGVKKVAKSPKKAKA 179
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 58.2 bits (139), Expect = 7e-08
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 1526 IQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RVKTFQENLSAFKRDPQIN 1582
I+LR+ G + L+FS +LDI+++ L F ++ + + ++ L F + +
Sbjct: 798 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 857
Query: 1583 I-LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKAT 1641
LL G G+ + A V++ + NP ++LQA R HRIGQ K ++R + K +
Sbjct: 858 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 917
Query: 1642 IEE 1644
+EE
Sbjct: 918 VEE 920
Score = 34.3 bits (77), Expect = 1.0
Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 47/228 (20%)
Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQG-VKKDGFLQPHFLAEQ-------DIVII 770
L++ P S W EI +S + +VY G + ++ H +I++
Sbjct: 534 LLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLT 591
Query: 771 TYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVK 830
TY++L + + L + W I +DEA ++
Sbjct: 592 TYEILLKDKAF--------------------------LGGLNWAFIGVDEAHRLKNDDSL 625
Query: 831 AAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQ 890
+ +R I+GTP+Q L++L+ L+ F I P W + K +
Sbjct: 626 LYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF--IMPEKFSSWED---FEEEHGKGRE 680
Query: 891 HLYSFIAK----ILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY 934
+ Y+ + K L R KKDV + +P + E+I + S +++ +Y
Sbjct: 681 YGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSALQKQYY 726
Score = 31.2 bits (69), Expect = 8.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 347 YYNPYTGCIIREYPNSGPQLLGG--------ILADEMGLGKTVEVLALI--LTHTRQ 393
Y + G +R+Y +G L ILADEMGLGKT++ ++ + L H Q
Sbjct: 472 YIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQ 528
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 57.4 bits (137), Expect = 1e-07
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFE 493
K K PP +I AV + GVS+ ++ K +++ YDV++N S +K LK L+ +
Sbjct: 32 KRKASGPPVSELITKAVAASKERSGVSLAALKKALAAA-GYDVEKNNSRIKLGLKSLVSK 90
Query: 494 GLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRK 533
G + Q KG G SG+F L K + K KK +K
Sbjct: 91 GTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKK 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,413,027
Number of Sequences: 37866
Number of extensions: 2967471
Number of successful extensions: 10531
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 10086
Number of HSP's gapped (non-prelim): 528
length of query: 1659
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1543
effective length of database: 13,855,062
effective search space: 21378360666
effective search space used: 21378360666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.