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Search of human proteins with 24308079
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
(366 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195972903 zinc finger protein 385A isoform a [Homo sapiens] 750 0.0
gi|24308079 zinc finger protein 385A isoform c [Homo sapiens] 750 0.0
gi|195972905 zinc finger protein 385A isoform b [Homo sapiens] 521 e-148
gi|13375981 zinc finger protein 385D [Homo sapiens] 329 3e-90
gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens] 325 5e-89
gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens] 325 5e-89
gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens] 325 5e-89
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 264 1e-70
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 264 1e-70
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 264 1e-70
gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens] 55 1e-07
gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens] 55 1e-07
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 54 2e-07
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 52 1e-06
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 52 1e-06
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 52 1e-06
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 51 2e-06
gi|116256475 zinc finger protein 827 [Homo sapiens] 46 6e-05
gi|156416026 zinc finger protein 219 [Homo sapiens] 46 6e-05
gi|156415998 zinc finger protein 219 [Homo sapiens] 46 6e-05
gi|156415996 zinc finger protein 219 [Homo sapiens] 46 6e-05
gi|13994287 BTE-binding protein 4 [Homo sapiens] 45 1e-04
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 45 1e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 45 1e-04
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 45 1e-04
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 45 1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 2e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 44 2e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 44 2e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 44 2e-04
>gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
Length = 386
Score = 750 bits (1937), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ
Sbjct: 21 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 80
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 120
IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP
Sbjct: 81 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 140
Query: 121 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 180
VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL
Sbjct: 141 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 200
Query: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 240
LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT
Sbjct: 201 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 260
Query: 241 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 300
FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP
Sbjct: 261 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 320
Query: 301 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 360
KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP
Sbjct: 321 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 380
Query: 361 ILFSPY 366
ILFSPY
Sbjct: 381 ILFSPY 386
>gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
Length = 366
Score = 750 bits (1937), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ
Sbjct: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 120
IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP
Sbjct: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 120
Query: 121 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 180
VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL
Sbjct: 121 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 180
Query: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 240
LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT
Sbjct: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 240
Query: 241 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 300
FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP
Sbjct: 241 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 300
Query: 301 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 360
KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP
Sbjct: 301 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 360
Query: 361 ILFSPY 366
ILFSPY
Sbjct: 361 ILFSPY 366
>gi|195972905 zinc finger protein 385A isoform b [Homo sapiens]
Length = 305
Score = 521 bits (1341), Expect = e-148
Identities = 275/366 (75%), Positives = 277/366 (75%), Gaps = 81/366 (22%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ
Sbjct: 21 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 80
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 120
IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP
Sbjct: 81 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP-------------------- 120
Query: 121 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 180
G P+PP G T G+G P P
Sbjct: 121 ------------------GDPAPP-----GSTPTNGDGVAPRP----------------- 140
Query: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 240
GTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT
Sbjct: 141 ---------------------GTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 179
Query: 241 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 300
FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP
Sbjct: 180 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 239
Query: 301 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 360
KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP
Sbjct: 240 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 299
Query: 361 ILFSPY 366
ILFSPY
Sbjct: 300 ILFSPY 305
>gi|13375981 zinc finger protein 385D [Homo sapiens]
Length = 395
Score = 329 bits (843), Expect = 3e-90
Identities = 189/373 (50%), Positives = 233/373 (62%), Gaps = 11/373 (2%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
+QP LD+K LPFPL+ A + LF N++ MDP+QKAV++HTFG PL ++ +ISCNICQ
Sbjct: 27 LQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVINHTFGVPLPHRRKQIISCNICQ 86
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 120
+RFNS SQA AHYKG +HA+++K +EA K + + + D A T + +
Sbjct: 87 LRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAK---DSAKTTFTSITTNTINTSS 143
Query: 121 VSMENGLG-PAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKR 179
+ G PA + S E V K +S P ++ EEEKAKR
Sbjct: 144 DKTDGTAGTPAISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCP-STETEEEKAKR 202
Query: 180 LLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPG---EPEAPA 236
LLYC+LCKVAVNS SQLEAHN GTKHKT+LEAR+G G IKA+PR G G +
Sbjct: 203 LLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGVKGKGPVNKGNTGL 262
Query: 237 QDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGK-PNPLLSRHKK-SRGAGELAGTLT 294
Q++TFHCEIC+V VNSE QLKQHISSRRH+D AGK P P S + K + A L L
Sbjct: 263 QNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKTAHPLGVKLV 322
Query: 295 FSKELPKSLAGGLLPSPLAVAAVMAA-AAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGP 353
FSKE K LA +LP+PLA AA AA A SP SLR APAA L Q + LL PAPGP
Sbjct: 323 FSKEPSKPLAPRILPNPLAAAAAAAAVAVSSPFSLRTAPAATLFQTSALPPALLRPAPGP 382
Query: 354 IRTAHGPILFSPY 366
IRTAH P+LF+PY
Sbjct: 383 IRTAHTPVLFAPY 395
>gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens]
Length = 369
Score = 325 bits (832), Expect = 5e-89
Identities = 189/384 (49%), Positives = 238/384 (61%), Gaps = 34/384 (8%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
MQP LD+K + FP++ + +GLF N++TMDPVQKAV++HTFG + K+ VISCN+CQ
Sbjct: 2 MQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQ 61
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGS-TPTNGDGVAPR 119
+RFNS SQAEAHYKG++HA++VK ++A K + + ++ P S TP G
Sbjct: 62 LRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITG------ 115
Query: 120 PVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAP---ASLPGGS------ 170
N + + + S S PS E+G + K G TP P A+ P S
Sbjct: 116 -----NNSDKSEDKGKLKASSSSQPSSSESGSFLLK-SGTTPLPPGAATSPSKSTNGAPG 169
Query: 171 ---KEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPP 227
+ EEEKAK+LLYC+LCKVAVNSLSQLEAHN G+KHKT++EAR+G GPIK+YPR G
Sbjct: 170 TVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSR 229
Query: 228 TP---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKP-NPLLSRHKK- 282
G + Q++TFHCEIC+V VNSE+QLKQHISSRRH+D VAGKP P S + K
Sbjct: 230 LKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYSPYNKL 289
Query: 283 SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPI 342
R LA L F K++ K LA L SPLA AAA S LSL P P+A L Q P I
Sbjct: 290 QRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA----AAAVSSALSLPPRPSASLFQAPAI 345
Query: 343 THPLLHPAPGPIRTAHGPILFSPY 366
LL P GPIR ILF+PY
Sbjct: 346 PPALLRPGHGPIRATPASILFAPY 369
>gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens]
Length = 395
Score = 325 bits (832), Expect = 5e-89
Identities = 189/384 (49%), Positives = 238/384 (61%), Gaps = 34/384 (8%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
MQP LD+K + FP++ + +GLF N++TMDPVQKAV++HTFG + K+ VISCN+CQ
Sbjct: 28 MQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQ 87
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGS-TPTNGDGVAPR 119
+RFNS SQAEAHYKG++HA++VK ++A K + + ++ P S TP G
Sbjct: 88 LRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITG------ 141
Query: 120 PVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAP---ASLPGGS------ 170
N + + + S S PS E+G + K G TP P A+ P S
Sbjct: 142 -----NNSDKSEDKGKLKASSSSQPSSSESGSFLLK-SGTTPLPPGAATSPSKSTNGAPG 195
Query: 171 ---KEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPP 227
+ EEEKAK+LLYC+LCKVAVNSLSQLEAHN G+KHKT++EAR+G GPIK+YPR G
Sbjct: 196 TVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSR 255
Query: 228 TP---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKP-NPLLSRHKK- 282
G + Q++TFHCEIC+V VNSE+QLKQHISSRRH+D VAGKP P S + K
Sbjct: 256 LKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYSPYNKL 315
Query: 283 SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPI 342
R LA L F K++ K LA L SPLA AAA S LSL P P+A L Q P I
Sbjct: 316 QRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA----AAAVSSALSLPPRPSASLFQAPAI 371
Query: 343 THPLLHPAPGPIRTAHGPILFSPY 366
LL P GPIR ILF+PY
Sbjct: 372 PPALLRPGHGPIRATPASILFAPY 395
>gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens]
Length = 471
Score = 325 bits (832), Expect = 5e-89
Identities = 189/384 (49%), Positives = 238/384 (61%), Gaps = 34/384 (8%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
MQP LD+K + FP++ + +GLF N++TMDPVQKAV++HTFG + K+ VISCN+CQ
Sbjct: 104 MQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQ 163
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGS-TPTNGDGVAPR 119
+RFNS SQAEAHYKG++HA++VK ++A K + + ++ P S TP G
Sbjct: 164 LRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITG------ 217
Query: 120 PVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAP---ASLPGGS------ 170
N + + + S S PS E+G + K G TP P A+ P S
Sbjct: 218 -----NNSDKSEDKGKLKASSSSQPSSSESGSFLLK-SGTTPLPPGAATSPSKSTNGAPG 271
Query: 171 ---KEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPP 227
+ EEEKAK+LLYC+LCKVAVNSLSQLEAHN G+KHKT++EAR+G GPIK+YPR G
Sbjct: 272 TVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSR 331
Query: 228 TP---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKP-NPLLSRHKK- 282
G + Q++TFHCEIC+V VNSE+QLKQHISSRRH+D VAGKP P S + K
Sbjct: 332 LKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYSPYNKL 391
Query: 283 SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPI 342
R LA L F K++ K LA L SPLA AAA S LSL P P+A L Q P I
Sbjct: 392 QRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA----AAAVSSALSLPPRPSASLFQAPAI 447
Query: 343 THPLLHPAPGPIRTAHGPILFSPY 366
LL P GPIR ILF+PY
Sbjct: 448 PPALLRPGHGPIRATPASILFAPY 471
Score = 55.8 bits (133), Expect = 6e-08
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 46 LLKTKRPVIS--CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDP 103
L K K+ ++ C +C I+ NS +QA+ H G H +RVK + + + P P
Sbjct: 24 LSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVK--QLSDGQPPPPAQASPSSN 81
Query: 104 APPGST--PTNGDGVAPRP-VSMENGLGPAPGSPEKQPGSPSPPSIP--ETGQGVTKGEG 158
+ GST T + P + M+ L P S + P T V K
Sbjct: 82 SSTGSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVI 141
Query: 159 GTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPI 218
S+P K K+++ C +C++ NS SQ EAH KG+KH ++A L
Sbjct: 142 NHTFGVSIP-------PKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKA---LDAT 191
Query: 219 KAYPRLGP 226
K P++ P
Sbjct: 192 KNKPKMVP 199
Score = 33.1 bits (74), Expect = 0.40
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 243 CEICNVKVNSEVQLKQHISSRRHRDGVA----GKPNP 275
CE+CN+++NS Q + H + + HR V G+P P
Sbjct: 36 CEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPPP 72
Score = 32.3 bits (72), Expect = 0.69
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 167 PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KTILEARSGLGPIKAYPRLG 225
P +E+K +C +C + +NS +Q + H+ G H K + + G P
Sbjct: 20 PEDQLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPP-------- 71
Query: 226 PPTPGEPEA 234
PP P +
Sbjct: 72 PPAQASPSS 80
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 264 bits (674), Expect = 1e-70
Identities = 166/402 (41%), Positives = 207/402 (51%), Gaps = 39/402 (9%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
+QPPLD K +L F A L LF N+STMDPVQKAV+SHTFG P K+ ISCNIC
Sbjct: 684 LQPPLDFKHLLAFHFNGAAPLSLFPNFSTMDPVQKAVISHTFGVPSPLKKKLFISCNICH 743
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGR--------------------EPGVREP 100
+RFNS +QAEAHYKG++HAR++K +EAAK++ R PG +
Sbjct: 744 LRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAPGEPQS 803
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 160
PA P P P P E + S PP PE G+ + G
Sbjct: 804 KVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGR---EAPGPE 860
Query: 161 PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL----- 215
PA A++ E K LYC CKV VNS SQL+AHN G KH+ ++E + G
Sbjct: 861 PAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGAPRRSR 920
Query: 216 -GPIK---AYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAG 271
P+ A + T G FHC +C ++VNSE QLKQH+SSRRH+D +AG
Sbjct: 921 GRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHKDRLAG 980
Query: 272 KPNPLLSRHKKSRGAGELA-----GTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPL 326
K S+H K + LA L K+L K+LA LPSPL AA A PL
Sbjct: 981 KTPKPSSQHSKLQKHAALAVSILKSKLALQKQLTKTLAARFLPSPLPTAATAICALPGPL 1040
Query: 327 SLRPAP-AAPLLQGPPITHPLLHPAP-GPIRTAHGPILFSPY 366
+LRPAP AA L PI P L P G +R A GPI+ +PY
Sbjct: 1041 ALRPAPTAATTLFPAPILGPALFRTPAGAVRPATGPIVLAPY 1082
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 264 bits (674), Expect = 1e-70
Identities = 166/402 (41%), Positives = 207/402 (51%), Gaps = 39/402 (9%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
+QPPLD K +L F A L LF N+STMDPVQKAV+SHTFG P K+ ISCNIC
Sbjct: 684 LQPPLDFKHLLAFHFNGAAPLSLFPNFSTMDPVQKAVISHTFGVPSPLKKKLFISCNICH 743
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGR--------------------EPGVREP 100
+RFNS +QAEAHYKG++HAR++K +EAAK++ R PG +
Sbjct: 744 LRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAPGEPQS 803
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 160
PA P P P P E + S PP PE G+ + G
Sbjct: 804 KVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGR---EAPGPE 860
Query: 161 PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL----- 215
PA A++ E K LYC CKV VNS SQL+AHN G KH+ ++E + G
Sbjct: 861 PAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGAPRRSR 920
Query: 216 -GPIK---AYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAG 271
P+ A + T G FHC +C ++VNSE QLKQH+SSRRH+D +AG
Sbjct: 921 GRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHKDRLAG 980
Query: 272 KPNPLLSRHKKSRGAGELA-----GTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPL 326
K S+H K + LA L K+L K+LA LPSPL AA A PL
Sbjct: 981 KTPKPSSQHSKLQKHAALAVSILKSKLALQKQLTKTLAARFLPSPLPTAATAICALPGPL 1040
Query: 327 SLRPAP-AAPLLQGPPITHPLLHPAP-GPIRTAHGPILFSPY 366
+LRPAP AA L PI P L P G +R A GPI+ +PY
Sbjct: 1041 ALRPAPTAATTLFPAPILGPALFRTPAGAVRPATGPIVLAPY 1082
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 264 bits (674), Expect = 1e-70
Identities = 166/402 (41%), Positives = 207/402 (51%), Gaps = 39/402 (9%)
Query: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
+QPPLD K +L F A L LF N+STMDPVQKAV+SHTFG P K+ ISCNIC
Sbjct: 684 LQPPLDFKHLLAFHFNGAAPLSLFPNFSTMDPVQKAVISHTFGVPSPLKKKLFISCNICH 743
Query: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGR--------------------EPGVREP 100
+RFNS +QAEAHYKG++HAR++K +EAAK++ R PG +
Sbjct: 744 LRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAPGEPQS 803
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 160
PA P P P P E + S PP PE G+ + G
Sbjct: 804 KVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGR---EAPGPE 860
Query: 161 PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL----- 215
PA A++ E K LYC CKV VNS SQL+AHN G KH+ ++E + G
Sbjct: 861 PAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGAPRRSR 920
Query: 216 -GPIK---AYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAG 271
P+ A + T G FHC +C ++VNSE QLKQH+SSRRH+D +AG
Sbjct: 921 GRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHKDRLAG 980
Query: 272 KPNPLLSRHKKSRGAGELA-----GTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPL 326
K S+H K + LA L K+L K+LA LPSPL AA A PL
Sbjct: 981 KTPKPSSQHSKLQKHAALAVSILKSKLALQKQLTKTLAARFLPSPLPTAATAICALPGPL 1040
Query: 327 SLRPAP-AAPLLQGPPITHPLLHPAP-GPIRTAHGPILFSPY 366
+LRPAP AA L PI P L P G +R A GPI+ +PY
Sbjct: 1041 ALRPAPTAATTLFPAPILGPALFRTPAGAVRPATGPIVLAPY 1082
>gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens]
Length = 289
Score = 54.7 bits (130), Expect = 1e-07
Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 39/229 (17%)
Query: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG 115
C +C + NS QA+AHY+G H ++++ AA + PP + +N
Sbjct: 72 CKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANS-------------CPPPARMSNVVE 118
Query: 116 VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEE 175
A PV P P+ P I T K + + ++ + +
Sbjct: 119 PAATPV--------VPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKN 170
Query: 176 KAKRLLYCALCKVAVNSLS------QLEAHNKGTKHKTILEARS-------GLGPIKAYP 222
AKRL L + NS S Q A +G + K + R+ GP P
Sbjct: 171 HAKRL---RLAEAQSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPY-FNP 226
Query: 223 RLGPPTPGE-PEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVA 270
R P + F+C +CNV E++ +QH+ S++H+ V+
Sbjct: 227 RSRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVS 275
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 134 PEKQPGSPSPP-SIPETGQGVTKGEGGTP--APASLPGGSKEEEEKAK----------RL 180
P KQP SPSPP S+ G + P ASLP +EE K +
Sbjct: 11 PPKQP-SPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQDCALEELCKP 69
Query: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILE---ARSGLGP---------------IKAYP 222
LYC LC V +NS Q +AH +G H L A + P + P
Sbjct: 70 LYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPP 129
Query: 223 RLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 265
++G PG A + + C++C+ +S + H + H
Sbjct: 130 QMGSFKPGGRVILATENDY-CKLCDASFSSPAVAQAHYQGKNH 171
>gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens]
Length = 288
Score = 54.7 bits (130), Expect = 1e-07
Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 38/228 (16%)
Query: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG 115
C +C + NS QA+AHY+G H ++++ AA + PP + +N
Sbjct: 72 CKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANS-------------CPPPARMSNVVE 118
Query: 116 VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEE 175
A PV P P+ P I T K + + ++ + +
Sbjct: 119 PAATPV--------VPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKN 170
Query: 176 KAKRLLYCALCKVAVNSLS------QLEAHNKGTKHKTILEARS------GLGPIKAYPR 223
AKRL L + NS S Q A +G + K + R+ GP PR
Sbjct: 171 HAKRL---RLAEAQSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSGPY-FNPR 226
Query: 224 LGPPTPGE-PEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVA 270
P + F+C +CNV E++ +QH+ S++H+ V+
Sbjct: 227 SRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVS 274
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 134 PEKQPGSPSPP-SIPETGQGVTKGEGGTP--APASLPGGSKEEEEKAK----------RL 180
P KQP SPSPP S+ G + P ASLP +EE K +
Sbjct: 11 PPKQP-SPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQDCALEELCKP 69
Query: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILE---ARSGLGP---------------IKAYP 222
LYC LC V +NS Q +AH +G H L A + P + P
Sbjct: 70 LYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPP 129
Query: 223 RLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 265
++G PG A + + C++C+ +S + H + H
Sbjct: 130 QMGSFKPGGRVILATENDY-CKLCDASFSSPAVAQAHYQGKNH 171
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 53.9 bits (128), Expect = 2e-07
Identities = 44/121 (36%), Positives = 54/121 (44%), Gaps = 28/121 (23%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--ENGLGPAPGSPEKQPGS-PSPPSIPE--- 148
PGV E PA G +P +P+P S +GLGP P P PG PSP + PE
Sbjct: 888 PGV-EARTPADRGPSPAPAPAASPQPGSRGPRDGLGPEPQEPP--PGPPPSPAAAPEAVP 944
Query: 149 --------TGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHN 200
+ +GV GTPAP LP G+ YC LC + +SLS AH
Sbjct: 945 PPPAPPSYSDKGVQTPSKGTPAP--LPNGNHR---------YCRLCNIKFSSLSTFIAHK 993
Query: 201 K 201
K
Sbjct: 994 K 994
Score = 48.5 bits (114), Expect = 9e-06
Identities = 80/317 (25%), Positives = 103/317 (32%), Gaps = 51/317 (16%)
Query: 56 CNICQIRFNSQSQAEAH---YKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN 112
C C IRF+ H Y +RH + PG PG APP +P
Sbjct: 685 CEACNIRFSRHETYTVHKRYYCASRHD------PPPRRPAAPPG--PPGPAAPPAPSPAA 736
Query: 113 GDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPA--PASLPGGS 170
R E AP P PG P P G G G G PA P G
Sbjct: 737 PVRTRRRRKLYELHAAGAP--PPPPPGHAPAPESPRPGSGSGSGPGLAPARSPGPAADGP 794
Query: 171 KEEEEKAKRLL------------YCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPI 218
+ +K +R L C C+V+ +SL AH K + GL P
Sbjct: 795 IDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYLAHKKYSCPAAPPPGALGL-PA 853
Query: 219 KAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD-GVAGKPNPLL 277
A P P P + R H + + + +R D G + P P
Sbjct: 854 AACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAG-----PGVEARTPADRGPSPAPAPAA 908
Query: 278 SRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLL 337
S SRG + G P+ G PSP A +P ++ P PA P
Sbjct: 909 SPQPGSRGPRDGLG------PEPQEPPPGPPPSP----------AAAPEAVPPPPAPPSY 952
Query: 338 QGPPITHPLL-HPAPGP 353
+ P PAP P
Sbjct: 953 SDKGVQTPSKGTPAPLP 969
Score = 39.7 bits (91), Expect = 0.004
Identities = 53/229 (23%), Positives = 70/229 (30%), Gaps = 57/229 (24%)
Query: 131 PGSPEKQPGSPSPPSIPETGQGV---TKGEGGTPAP-----------ASLPGGSKEEEEK 176
PG PG P+ P P + G +G GG P + PG S ++ E
Sbjct: 619 PGPARAPPGQPAEPDAPRSSPGPGAREEGAGGAATPEDGAGGRGSEGSQSPGSSVDDAED 678
Query: 177 AKRLLYCALCKVAVNSLSQLEAHNKGTKHKT-ILEARSGLGPIKAYPRLGPPTPGEPEAP 235
C C + + H T HK +R P + GPP P P AP
Sbjct: 679 DPSRTLCEACNI------RFSRHETYTVHKRYYCASRHDPPPRRPAAPPGPPGPAAPPAP 732
Query: 236 AQDRTFHCEICNVKVNSEVQLKQHISSRRHRD----GVAGKPNPLLSRHKKSRGAGELAG 291
+ + +RR R AG P P H
Sbjct: 733 SP-------------------AAPVRTRRRRKLYELHAAGAPPPPPPGHAP--------- 764
Query: 292 TLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP 340
+ E P+ +G LA A AA P+ L P PL P
Sbjct: 765 ----APESPRPGSGSGSGPGLAPARSPGPAADGPIDLSKKPRRPLPGAP 809
Score = 28.5 bits (62), Expect = 9.9
Identities = 56/230 (24%), Positives = 75/230 (32%), Gaps = 26/230 (11%)
Query: 79 ARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQ 137
A G A+ + G EP PA P S + P+ GP S
Sbjct: 434 AEATNGEARAEPLAQNGGSSEP--PAAPRSIKVEAVEEPEAAPILGPGEPGPQAPSRTPS 491
Query: 138 PGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLE 197
P SP+P + K E +P P S P + A L A S++
Sbjct: 492 PRSPAPARV--------KAELSSPTPGSSPVPGELGLAGALFLPQYVFGPDAAPPASEIL 543
Query: 198 AHNKGTKHKTILE-ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNS-EVQ 255
A H + + A +G G G T P AP F CEI VN+ V
Sbjct: 544 AKMSELVHSRLQQGAGAGAG--------GAQTGLFPGAPKGATCFECEITFSNVNNYYVH 595
Query: 256 LKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAG 305
+ + S RR A + P R K G + P+S G
Sbjct: 596 KRLYCSGRR-----APEDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPG 640
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/281 (21%), Positives = 88/281 (31%), Gaps = 73/281 (25%)
Query: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN--- 112
C +C N H +H + V + G PG+ PG P PPG+TPT+
Sbjct: 655 CKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGLMGPGPPPPPGATPTSPPE 714
Query: 113 ------------------GDGVAP-RPVSME---NGL----GPAPGSPEKQPGSPSPPSI 146
G G+ P +P+ + NG PA P PGS SP +
Sbjct: 715 LFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLLLNGFHHVGAPARKFPTSAPGSLSPDAH 774
Query: 147 PETGQGVTKGEGGTPAP-----------------------------------ASLPGGSK 171
Q + P SLP
Sbjct: 775 LPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLELLLYHCSIGRSLP--EA 832
Query: 172 EEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTP-- 229
E +E A C LC + + H K KH + + L + +G P+P
Sbjct: 833 EWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLR--EGGGAMGTPSPAS 890
Query: 230 ---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD 267
G P C IC+ + NS+ +++ H H +
Sbjct: 891 LGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAHEE 931
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 156 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 215
G GTP+PASL G+ L C +C NS +++ H +G H E S +
Sbjct: 881 GAMGTPSPASLGDGAPYGSVSPLHLR-CNICDFESNSKEKMQLHARGAAH----EENSQI 935
Query: 216 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNP 275
++ LG +HC +C + S + + QH+ + HRD A +
Sbjct: 936 YKVRLGAELG--------------LYHCLLCAWETPSRLAVLQHLRTPAHRDAQAQRRLQ 981
Query: 276 LLSRHKKS-RGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGS 324
LL + G L L+FS G L +P A V+ A AG+
Sbjct: 982 LLQNGPTTEEGLAALQSILSFSH--------GQLRTP---AEVVPAEAGN 1020
Score = 43.1 bits (100), Expect = 4e-04
Identities = 68/285 (23%), Positives = 99/285 (34%), Gaps = 53/285 (18%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG-SPEKQPGSPS-----PPSIPE 148
P + P P P V +P S G P+P SP +P + + PP++ E
Sbjct: 1308 PNLTPEASPDPLPEPPLASVEVPDKP-SGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAE 1366
Query: 149 TGQGVTKGEGGTPAPASLPGGSKEEEEKAK-------------RLLYCALCKVAVNSLSQ 195
+G T GE + PA P S+ K R C +CK + +
Sbjct: 1367 EEEGTT-GELRSAEPA--PADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNI 1423
Query: 196 LEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP-----AQDRTFHCEICNVKV 250
L H H ++ ++ + P P GE AP A D+ F C +C V
Sbjct: 1424 LLVHYNSVSHLHKMK-KAAIDP-------SAPARGEAGAPPTTTAATDKPFKCTVCRVSY 1475
Query: 251 NSEVQLKQHISSRRHRDGVAGKPNPLL----SRHKKSRGAGELAGTLTFSKELPKSLAGG 306
N L+ H+ S H+ G R ++ GE G + K+ P +
Sbjct: 1476 NQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDT---- 1531
Query: 307 LLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAP 351
S + PL L PA P T P+L P P
Sbjct: 1532 ---SGFISGLPFLSPPPPPLDLHRFPA------PLFTPPVLPPFP 1567
Score = 42.7 bits (99), Expect = 5e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 151 QGVTKGEGG--TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KT 207
QG G GG +P ASLP + ++E K K C +C N L H KH +
Sbjct: 621 QGFQAGPGGQGSPTEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQN 680
Query: 208 ILEARSGLGPIKAYPRL---GPPTP--GEPEAPAQ 237
+L GL P+ P L GPP P P +P +
Sbjct: 681 VLMLHQGL-PLGLPPGLMGPGPPPPPGATPTSPPE 714
Score = 41.6 bits (96), Expect = 0.001
Identities = 69/282 (24%), Positives = 99/282 (35%), Gaps = 52/282 (18%)
Query: 96 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 155
G E G PP + + P S E G PAP GSP PS P Q
Sbjct: 462 GQEEDGGLCPPLNQSS--------PTSKEGGTLPAP------VGSPEDPSDPP--QPYRL 505
Query: 156 GEGGTPAPASLPGGSKEEE------EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTIL 209
+ TPAPA+ G S + + L C C L+ H + KH
Sbjct: 506 ADDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKCPKCNWHYKYQQTLDVHMR-EKHPESN 564
Query: 210 EARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH---- 265
S A+PRL GE + + C++CN ++ L H+ S +H
Sbjct: 565 SHCSYCSAGGAHPRLAR---GESYNCGY-KPYRCDVCNYSTTTKGNLSIHMQSDKHLANL 620
Query: 266 ---RDGVAGKPNPLLSRHKKSRGAGE-------LAGTLTFSKELPKSLAGGLLPSPLAVA 315
+ G G+ +P + S G E ++ + ++L + S +
Sbjct: 621 QGFQAGPGGQGSPTEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIH-MTSEKHMQ 679
Query: 316 AVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTA 357
V+ G PL L P P GPP P PG T+
Sbjct: 680 NVLMLHQGLPLGLPPGLMGP---GPP-------PPPGATPTS 711
Score = 38.9 bits (89), Expect = 0.007
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 43/277 (15%)
Query: 92 GREPGVREPGDPAP--PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 149
G+E P P P P P+ +G P + + + + S S + PE+
Sbjct: 2202 GKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAEPES 2261
Query: 150 -GQGVTKGE--GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTK-- 204
G G T G GGT P + + + +L C A + + E G +
Sbjct: 2262 PGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIG 2321
Query: 205 -HKTILE-----ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQ 258
K +++ AR+ K T G E + C C+VK + V +
Sbjct: 2322 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRG 2381
Query: 259 HISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVM 318
H+ SR+H L++ K++ A + +S L P+P A A+
Sbjct: 2382 HLFSRQH-----------LAKLKEAVRA----------QLKSESKCYDLAPAPEAPPALK 2420
Query: 319 AAAAGSPLSLRPAPAAP--------LLQGPPITHPLL 347
A A +P S+ P AAP LL GP + P L
Sbjct: 2421 APPATTPASM-PLGAAPTLPRLAPVLLSGPALAQPPL 2456
Score = 36.2 bits (82), Expect = 0.048
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 49 TKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEA-AKTRGREPGVREPGDPAPPG 107
T +P C +C++ +N S E H + H R +G + +K G E EP + G
Sbjct: 1462 TDKP-FKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEG 1520
Query: 108 STPTNGDG------------VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 149
T G ++P P ++ PAP P P P +PE+
Sbjct: 1521 EVGTEKKGPDTSGFISGLPFLSPPPPPLDLHRFPAP--LFTPPVLPPFPLVPES 1572
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 127 LGPAPGSPEKQPGSP-SPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCAL 185
L P P PE +P PP +P G+G E G L G + C
Sbjct: 2619 LQPPPQPPEPTATAPPKPPELPAPGEG----EAGE-VDELLTGSTGISTVDVTHRYLCRQ 2673
Query: 186 CKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEI 245
CK+A + + AH + R G + PP P T+HC
Sbjct: 2674 CKMAFDGEAPATAHQRSF----CFFGRGSGGSM-------PPPLRVPIC-----TYHCLA 2717
Query: 246 CNVKVNSEVQLKQHISSRRHR 266
C V ++ L H+ S HR
Sbjct: 2718 CEVLLSGREALASHLRSSAHR 2738
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/281 (21%), Positives = 88/281 (31%), Gaps = 73/281 (25%)
Query: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN--- 112
C +C N H +H + V + G PG+ PG P PPG+TPT+
Sbjct: 571 CKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGLMGPGPPPPPGATPTSPPE 630
Query: 113 ------------------GDGVAP-RPVSME---NGL----GPAPGSPEKQPGSPSPPSI 146
G G+ P +P+ + NG PA P PGS SP +
Sbjct: 631 LFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLLLNGFHHVGAPARKFPTSAPGSLSPDAH 690
Query: 147 PETGQGVTKGEGGTPAP-----------------------------------ASLPGGSK 171
Q + P SLP
Sbjct: 691 LPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLELLLYHCSIGRSLP--EA 748
Query: 172 EEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTP-- 229
E +E A C LC + + H K KH + + L + +G P+P
Sbjct: 749 EWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLR--EGGGAMGTPSPAS 806
Query: 230 ---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD 267
G P C IC+ + NS+ +++ H H +
Sbjct: 807 LGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAHEE 847
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 156 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 215
G GTP+PASL G+ L C +C NS +++ H +G H E S +
Sbjct: 797 GAMGTPSPASLGDGAPYGSVSPLHLR-CNICDFESNSKEKMQLHARGAAH----EENSQI 851
Query: 216 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNP 275
++ LG +HC +C + S + + QH+ + HRD A +
Sbjct: 852 YKVRLGAELG--------------LYHCLLCAWETPSRLAVLQHLRTPAHRDAQAQRRLQ 897
Query: 276 LLSRHKKS-RGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGS 324
LL + G L L+FS G L +P A V+ A AG+
Sbjct: 898 LLQNGPTTEEGLAALQSILSFSH--------GQLRTP---AEVVPAEAGN 936
Score = 43.1 bits (100), Expect = 4e-04
Identities = 68/285 (23%), Positives = 99/285 (34%), Gaps = 53/285 (18%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG-SPEKQPGSPS-----PPSIPE 148
P + P P P V +P S G P+P SP +P + + PP++ E
Sbjct: 1224 PNLTPEASPDPLPEPPLASVEVPDKP-SGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAE 1282
Query: 149 TGQGVTKGEGGTPAPASLPGGSKEEEEKAK-------------RLLYCALCKVAVNSLSQ 195
+G T GE + PA P S+ K R C +CK + +
Sbjct: 1283 EEEGTT-GELRSAEPA--PADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNI 1339
Query: 196 LEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP-----AQDRTFHCEICNVKV 250
L H H ++ ++ + P P GE AP A D+ F C +C V
Sbjct: 1340 LLVHYNSVSHLHKMK-KAAIDP-------SAPARGEAGAPPTTTAATDKPFKCTVCRVSY 1391
Query: 251 NSEVQLKQHISSRRHRDGVAGKPNPLL----SRHKKSRGAGELAGTLTFSKELPKSLAGG 306
N L+ H+ S H+ G R ++ GE G + K+ P +
Sbjct: 1392 NQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDT---- 1447
Query: 307 LLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAP 351
S + PL L PA P T P+L P P
Sbjct: 1448 ---SGFISGLPFLSPPPPPLDLHRFPA------PLFTPPVLPPFP 1483
Score = 42.4 bits (98), Expect = 7e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 151 QGVTKGEGG--TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KT 207
QG G GG +P ASLP + ++E K K C +C N L H KH +
Sbjct: 537 QGFQAGPGGQGSPPEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQN 596
Query: 208 ILEARSGLGPIKAYPRL---GPPTP--GEPEAPAQ 237
+L GL P+ P L GPP P P +P +
Sbjct: 597 VLMLHQGL-PLGLPPGLMGPGPPPPPGATPTSPPE 630
Score = 41.2 bits (95), Expect = 0.001
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 27/182 (14%)
Query: 96 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 155
G E G PP + + P S E G PAP GSP PS P Q
Sbjct: 378 GQEEDGGLCPPLNQSS--------PTSKEGGTLPAP------VGSPEDPSDPP--QPYRL 421
Query: 156 GEGGTPAPASLPGGSKEEE------EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTIL 209
+ TPAPA+ G S + + L C C L+ H + KH
Sbjct: 422 ADDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKCPKCNWHYKYQQTLDVHMR-EKHPESN 480
Query: 210 EARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGV 269
S A+PRL GE + + C++CN ++ L H+ S +H +
Sbjct: 481 SHCSYCSAGGAHPRLAR---GESYNCGY-KPYRCDVCNYSTTTKGNLSIHMQSDKHLANL 536
Query: 270 AG 271
G
Sbjct: 537 QG 538
Score = 38.9 bits (89), Expect = 0.007
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 43/277 (15%)
Query: 92 GREPGVREPGDPAP--PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 149
G+E P P P P P+ +G P + + + + S S + PE+
Sbjct: 2118 GKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAEPES 2177
Query: 150 -GQGVTKGE--GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTK-- 204
G G T G GGT P + + + +L C A + + E G +
Sbjct: 2178 PGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIG 2237
Query: 205 -HKTILE-----ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQ 258
K +++ AR+ K T G E + C C+VK + V +
Sbjct: 2238 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRG 2297
Query: 259 HISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVM 318
H+ SR+H L++ K++ A + +S L P+P A A+
Sbjct: 2298 HLFSRQH-----------LAKLKEAVRA----------QLKSESKCYDLAPAPEAPPALK 2336
Query: 319 AAAAGSPLSLRPAPAAP--------LLQGPPITHPLL 347
A A +P S+ P AAP LL GP + P L
Sbjct: 2337 APPATTPASM-PLGAAPTLPRLAPVLLSGPALAQPPL 2372
Score = 36.2 bits (82), Expect = 0.048
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 49 TKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEA-AKTRGREPGVREPGDPAPPG 107
T +P C +C++ +N S E H + H R +G + +K G E EP + G
Sbjct: 1378 TDKP-FKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEG 1436
Query: 108 STPTNGDG------------VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 149
T G ++P P ++ PAP P P P +PE+
Sbjct: 1437 EVGTEKKGPDTSGFISGLPFLSPPPPPLDLHRFPAP--LFTPPVLPPFPLVPES 1488
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 127 LGPAPGSPEKQPGSP-SPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCAL 185
L P P PE +P PP +P G+G E G L G + C
Sbjct: 2535 LQPPPQPPEPTATAPPKPPELPAPGEG----EAGE-VDELLTGSTGISTVDVTHRYLCRQ 2589
Query: 186 CKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEI 245
CK+A + + AH + R G + PP P T+HC
Sbjct: 2590 CKMAFDGEAPATAHQRSF----CFFGRGSGGSM-------PPPLRVPIC-----TYHCLA 2633
Query: 246 CNVKVNSEVQLKQHISSRRHR 266
C V ++ L H+ S HR
Sbjct: 2634 CEVLLSGREALASHLRSSAHR 2654
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/281 (21%), Positives = 88/281 (31%), Gaps = 73/281 (25%)
Query: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN--- 112
C +C N H +H + V + G PG+ PG P PPG+TPT+
Sbjct: 571 CKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGLMGPGPPPPPGATPTSPPE 630
Query: 113 ------------------GDGVAP-RPVSME---NGL----GPAPGSPEKQPGSPSPPSI 146
G G+ P +P+ + NG PA P PGS SP +
Sbjct: 631 LFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLLLNGFHHVGAPARKFPTSAPGSLSPDAH 690
Query: 147 PETGQGVTKGEGGTPAP-----------------------------------ASLPGGSK 171
Q + P SLP
Sbjct: 691 LPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLELLLYHCSIGRSLP--EA 748
Query: 172 EEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTP-- 229
E +E A C LC + + H K KH + + L + +G P+P
Sbjct: 749 EWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLR--EGGGAMGTPSPAS 806
Query: 230 ---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD 267
G P C IC+ + NS+ +++ H H +
Sbjct: 807 LGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAHEE 847
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 156 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 215
G GTP+PASL G+ L C +C NS +++ H +G H E S +
Sbjct: 797 GAMGTPSPASLGDGAPYGSVSPLHLR-CNICDFESNSKEKMQLHARGAAH----EENSQI 851
Query: 216 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNP 275
++ LG +HC +C + S + + QH+ + HRD A +
Sbjct: 852 YKVRLGAELG--------------LYHCLLCAWETPSRLAVLQHLRTPAHRDAQAQRRLQ 897
Query: 276 LLSRHKKS-RGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGS 324
LL + G L L+FS G L +P A V+ A AG+
Sbjct: 898 LLQNGPTTEEGLAALQSILSFSH--------GQLRTP---AEVVPAEAGN 936
Score = 43.1 bits (100), Expect = 4e-04
Identities = 68/285 (23%), Positives = 99/285 (34%), Gaps = 53/285 (18%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG-SPEKQPGSPS-----PPSIPE 148
P + P P P V +P S G P+P SP +P + + PP++ E
Sbjct: 1224 PNLTPEASPDPLPEPPLASVEVPDKP-SGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAE 1282
Query: 149 TGQGVTKGEGGTPAPASLPGGSKEEEEKAK-------------RLLYCALCKVAVNSLSQ 195
+G T GE + PA P S+ K R C +CK + +
Sbjct: 1283 EEEGTT-GELRSAEPA--PADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNI 1339
Query: 196 LEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP-----AQDRTFHCEICNVKV 250
L H H ++ ++ + P P GE AP A D+ F C +C V
Sbjct: 1340 LLVHYNSVSHLHKMK-KAAIDP-------SAPARGEAGAPPTTTAATDKPFKCTVCRVSY 1391
Query: 251 NSEVQLKQHISSRRHRDGVAGKPNPLL----SRHKKSRGAGELAGTLTFSKELPKSLAGG 306
N L+ H+ S H+ G R ++ GE G + K+ P +
Sbjct: 1392 NQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDT---- 1447
Query: 307 LLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAP 351
S + PL L PA P T P+L P P
Sbjct: 1448 ---SGFISGLPFLSPPPPPLDLHRFPA------PLFTPPVLPPFP 1483
Score = 42.4 bits (98), Expect = 7e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 151 QGVTKGEGG--TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KT 207
QG G GG +P ASLP + ++E K K C +C N L H KH +
Sbjct: 537 QGFQAGPGGQGSPPEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQN 596
Query: 208 ILEARSGLGPIKAYPRL---GPPTP--GEPEAPAQ 237
+L GL P+ P L GPP P P +P +
Sbjct: 597 VLMLHQGL-PLGLPPGLMGPGPPPPPGATPTSPPE 630
Score = 41.2 bits (95), Expect = 0.001
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 27/182 (14%)
Query: 96 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 155
G E G PP + + P S E G PAP GSP PS P Q
Sbjct: 378 GQEEDGGLCPPLNQSS--------PTSKEGGTLPAP------VGSPEDPSDPP--QPYRL 421
Query: 156 GEGGTPAPASLPGGSKEEE------EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTIL 209
+ TPAPA+ G S + + L C C L+ H + KH
Sbjct: 422 ADDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKCPKCNWHYKYQQTLDVHMR-EKHPESN 480
Query: 210 EARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGV 269
S A+PRL GE + + C++CN ++ L H+ S +H +
Sbjct: 481 SHCSYCSAGGAHPRLAR---GESYNCGY-KPYRCDVCNYSTTTKGNLSIHMQSDKHLANL 536
Query: 270 AG 271
G
Sbjct: 537 QG 538
Score = 38.9 bits (89), Expect = 0.007
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 43/277 (15%)
Query: 92 GREPGVREPGDPAP--PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 149
G+E P P P P P+ +G P + + + + S S + PE+
Sbjct: 2118 GKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAEPES 2177
Query: 150 -GQGVTKGE--GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTK-- 204
G G T G GGT P + + + +L C A + + E G +
Sbjct: 2178 PGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIG 2237
Query: 205 -HKTILE-----ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQ 258
K +++ AR+ K T G E + C C+VK + V +
Sbjct: 2238 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRG 2297
Query: 259 HISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVM 318
H+ SR+H L++ K++ A + +S L P+P A A+
Sbjct: 2298 HLFSRQH-----------LAKLKEAVRA----------QLKSESKCYDLAPAPEAPPALK 2336
Query: 319 AAAAGSPLSLRPAPAAP--------LLQGPPITHPLL 347
A A +P S+ P AAP LL GP + P L
Sbjct: 2337 APPATTPASM-PLGAAPTLPRLAPVLLSGPALAQPPL 2372
Score = 36.2 bits (82), Expect = 0.048
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 49 TKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEA-AKTRGREPGVREPGDPAPPG 107
T +P C +C++ +N S E H + H R +G + +K G E EP + G
Sbjct: 1378 TDKP-FKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEG 1436
Query: 108 STPTNGDG------------VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 149
T G ++P P ++ PAP P P P +PE+
Sbjct: 1437 EVGTEKKGPDTSGFISGLPFLSPPPPPLDLHRFPAP--LFTPPVLPPFPLVPES 1488
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 127 LGPAPGSPEKQPGSP-SPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCAL 185
L P P PE +P PP +P G+G E G L G + C
Sbjct: 2535 LQPPPQPPEPTATAPPKPPELPAPGEG----EAGE-VDELLTGSTGISTVDVTHRYLCRQ 2589
Query: 186 CKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEI 245
CK+A + + AH + R G + PP P T+HC
Sbjct: 2590 CKMAFDGEAPATAHQRSF----CFFGRGSGGSM-------PPPLRVPIC-----TYHCLA 2633
Query: 246 CNVKVNSEVQLKQHISSRRHR 266
C V ++ L H+ S HR
Sbjct: 2634 CEVLLSGREALASHLRSSAHR 2654
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 50.8 bits (120), Expect = 2e-06
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 54 ISCNICQIRFNSQSQAEAHYKGNRHARRVK----------GIEAAKTRGREPGVR-EPGD 102
+ C++C + AH +G++H + K +E A PG +P
Sbjct: 319 LHCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTS 378
Query: 103 PAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----QPGSPSPPSIPETGQGVTKGE 157
P P ++ +A RPV+ + L P P+ Q G P+ P + G G
Sbjct: 379 PTGPSVCASSRPALAKRPVASK-ALCEGPPEPQAAGCRPQWGKPAQPKLEGPGAPTQGGS 437
Query: 158 GGTPAPAS--LPGGSKEEEEKAK---RLL--YCALCKVAVNSLSQLEAHNKGTKHKTILE 210
PA S P G + EE R+L +C LC+ + N L+ + H +G +H+ L+
Sbjct: 438 KEAPAGCSDAQPVGPEYVEEVFSDEGRVLRFHCKLCECSFNDLNAKDLHVRGRRHR--LQ 495
Query: 211 ARSGLGP 217
R + P
Sbjct: 496 YRKKVNP 502
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/252 (22%), Positives = 80/252 (31%), Gaps = 47/252 (18%)
Query: 105 PPGSTPTNGDGVAPR----PVSMENGLGP--APGSPEKQPGSPS---PPSIPETGQGVTK 155
PP PT AP S+ + P P P PG P PP P +
Sbjct: 188 PPSYNPTCTAYTAPSYPNYDASVYSAASPFYPPAQPPPPPGPPQQLPPPPAPAGSGSSPR 247
Query: 156 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 215
+ P P+ LP + + +L YC +CK++ H G KH+
Sbjct: 248 ADSKPPLPSKLP--RPKAGPRQLQLHYCDICKISCAGPQTYREHLGGQKHRKK------- 298
Query: 216 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHR-----DGVA 270
+A + G G P HC++C V HI +H+
Sbjct: 299 ---EAAQKTGVQPNGSPRGVQAQ--LHCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKL 353
Query: 271 GKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSP-LSLR 329
GKP P T L G P + A+ P L+ R
Sbjct: 354 GKPIP------------------TLEPALATESPPGAEAKPTSPTGPSVCASSRPALAKR 395
Query: 330 PAPAAPLLQGPP 341
P + L +GPP
Sbjct: 396 PVASKALCEGPP 407
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 45.8 bits (107), Expect = 6e-05
Identities = 62/246 (25%), Positives = 86/246 (34%), Gaps = 39/246 (15%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGG 159
P DP PP + + V P P P P P P P P S+ V KG
Sbjct: 311 PEDPLPPPPSEKKPEKVTPPP--------PPPPPP---PPPPPPQSLELLLLPVPKGR-- 357
Query: 160 TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIK 219
S P S EEE K C +C + + S + H H + + L P +
Sbjct: 358 ----VSKPSNSASEEESGKPF-QCPICGLVIKRKSYWKRHM--VIHTGLKSHQCPLCPFR 410
Query: 220 AYPRLGPPTPGEPEAPAQDR--TFHCEICNVKVNSEVQLKQHISSRRH------------ 265
+ + + QDR TF C++C + LK H+ +H
Sbjct: 411 CARKDNLKSHMKVHQH-QDRGETFQCQLCPFTSSRHFSLKLHMRCHQHFLRTEAKVKEEI 469
Query: 266 -RDGVAGKPNPLLSR---HKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAA 321
V G P+ S ++ G EL GT+ S ++ GG SPL V
Sbjct: 470 PDPDVKGSPHLSDSACLGQQREGGGTELVGTMMTSNTPERTSQGGAGVSPLLVKEEPKED 529
Query: 322 AGSPLS 327
G P S
Sbjct: 530 NGLPTS 535
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 45.8 bits (107), Expect = 6e-05
Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 92 GREPGVREPGDPAPP---GSTPTNGDGVAPRPVS-MENGLGPAPGSPEKQPGSPSPPSIP 147
G PG P +P PP GS P +G +P+P + +E P P S PGS P+ P
Sbjct: 555 GAGPG--PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 148 ETGQGVTKGEGGTPAPASL-----PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKG 202
G+ + G GG P L PGG R L+C A +L A +
Sbjct: 613 --GRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGA----PELMALHLQ 666
Query: 203 TKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 238
H R + P P+ P +P+Q+
Sbjct: 667 VHHSRRARGRRPPQADASPPYARVPSGETPPSPSQE 702
Score = 31.6 bits (70), Expect = 1.2
Identities = 46/188 (24%), Positives = 66/188 (35%), Gaps = 37/188 (19%)
Query: 3 PPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQIR 62
PP + +P P EP P +P ++A + P P C +C
Sbjct: 235 PPQPEPRSVPQP-EPEP-----------EPEREATPTPAPAAPEEPPAPPEFRCQVCGQS 282
Query: 63 FNSQSQAEAHYKGNR----HARRVKGI---------EAAKTRGREPG-VREPGDPAPPGS 108
F + H + ++ HA V G K + G +R PG + P
Sbjct: 283 FTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPAR 342
Query: 109 TPTNGDG--VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIP-----ETGQGVTKGEGGTP 161
P D +A P+ L PAP E++ PPS+ G+G GEG P
Sbjct: 343 APQPPDLGLLAYEPLGPALLLAPAPTPAERR----EPPSLLGYLSLRAGEGRPNGEGAEP 398
Query: 162 APASLPGG 169
P GG
Sbjct: 399 GPGRSFGG 406
Score = 30.8 bits (68), Expect = 2.0
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 227 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRR----HRDGVAGK--PNPLLSRH 280
P P PE P F C++C LK H+ + H V G+ P ++
Sbjct: 260 PAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKN 319
Query: 281 KKSRGAGELAGTLTFSKELPKSLAG-GLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG 339
A +L G L P +G P P + + G L L PAP +
Sbjct: 320 HMKVHASKL-GPL----RAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERRE 374
Query: 340 PP 341
PP
Sbjct: 375 PP 376
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 115 GVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEE 174
G RP++ + P P+ P P P S+P+ TP PA + EE
Sbjct: 213 GAPERPLAATSAAPPPQPQPQPPP-QPEPRSVPQPEPEPEPEREATPTPAP----AAPEE 267
Query: 175 EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 206
A C +C + L+ H + KHK
Sbjct: 268 PPAPPEFRCQVCGQSFTQSWFLKGHMR--KHK 297
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 45.8 bits (107), Expect = 6e-05
Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 92 GREPGVREPGDPAPP---GSTPTNGDGVAPRPVS-MENGLGPAPGSPEKQPGSPSPPSIP 147
G PG P +P PP GS P +G +P+P + +E P P S PGS P+ P
Sbjct: 555 GAGPG--PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 148 ETGQGVTKGEGGTPAPASL-----PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKG 202
G+ + G GG P L PGG R L+C A +L A +
Sbjct: 613 --GRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGA----PELMALHLQ 666
Query: 203 TKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 238
H R + P P+ P +P+Q+
Sbjct: 667 VHHSRRARGRRPPQADASPPYARVPSGETPPSPSQE 702
Score = 31.6 bits (70), Expect = 1.2
Identities = 46/188 (24%), Positives = 66/188 (35%), Gaps = 37/188 (19%)
Query: 3 PPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQIR 62
PP + +P P EP P +P ++A + P P C +C
Sbjct: 235 PPQPEPRSVPQP-EPEP-----------EPEREATPTPAPAAPEEPPAPPEFRCQVCGQS 282
Query: 63 FNSQSQAEAHYKGNR----HARRVKGI---------EAAKTRGREPG-VREPGDPAPPGS 108
F + H + ++ HA V G K + G +R PG + P
Sbjct: 283 FTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPAR 342
Query: 109 TPTNGDG--VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIP-----ETGQGVTKGEGGTP 161
P D +A P+ L PAP E++ PPS+ G+G GEG P
Sbjct: 343 APQPPDLGLLAYEPLGPALLLAPAPTPAERR----EPPSLLGYLSLRAGEGRPNGEGAEP 398
Query: 162 APASLPGG 169
P GG
Sbjct: 399 GPGRSFGG 406
Score = 30.8 bits (68), Expect = 2.0
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 227 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRR----HRDGVAGK--PNPLLSRH 280
P P PE P F C++C LK H+ + H V G+ P ++
Sbjct: 260 PAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKN 319
Query: 281 KKSRGAGELAGTLTFSKELPKSLAG-GLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG 339
A +L G L P +G P P + + G L L PAP +
Sbjct: 320 HMKVHASKL-GPL----RAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERRE 374
Query: 340 PP 341
PP
Sbjct: 375 PP 376
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 115 GVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEE 174
G RP++ + P P+ P P P S+P+ TP PA + EE
Sbjct: 213 GAPERPLAATSAAPPPQPQPQPPP-QPEPRSVPQPEPEPEPEREATPTPAP----AAPEE 267
Query: 175 EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 206
A C +C + L+ H + KHK
Sbjct: 268 PPAPPEFRCQVCGQSFTQSWFLKGHMR--KHK 297
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 45.8 bits (107), Expect = 6e-05
Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 92 GREPGVREPGDPAPP---GSTPTNGDGVAPRPVS-MENGLGPAPGSPEKQPGSPSPPSIP 147
G PG P +P PP GS P +G +P+P + +E P P S PGS P+ P
Sbjct: 555 GAGPG--PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 148 ETGQGVTKGEGGTPAPASL-----PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKG 202
G+ + G GG P L PGG R L+C A +L A +
Sbjct: 613 --GRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGA----PELMALHLQ 666
Query: 203 TKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 238
H R + P P+ P +P+Q+
Sbjct: 667 VHHSRRARGRRPPQADASPPYARVPSGETPPSPSQE 702
Score = 31.6 bits (70), Expect = 1.2
Identities = 46/188 (24%), Positives = 66/188 (35%), Gaps = 37/188 (19%)
Query: 3 PPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQIR 62
PP + +P P EP P +P ++A + P P C +C
Sbjct: 235 PPQPEPRSVPQP-EPEP-----------EPEREATPTPAPAAPEEPPAPPEFRCQVCGQS 282
Query: 63 FNSQSQAEAHYKGNR----HARRVKGI---------EAAKTRGREPG-VREPGDPAPPGS 108
F + H + ++ HA V G K + G +R PG + P
Sbjct: 283 FTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPAR 342
Query: 109 TPTNGDG--VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIP-----ETGQGVTKGEGGTP 161
P D +A P+ L PAP E++ PPS+ G+G GEG P
Sbjct: 343 APQPPDLGLLAYEPLGPALLLAPAPTPAERR----EPPSLLGYLSLRAGEGRPNGEGAEP 398
Query: 162 APASLPGG 169
P GG
Sbjct: 399 GPGRSFGG 406
Score = 30.8 bits (68), Expect = 2.0
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 227 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRR----HRDGVAGK--PNPLLSRH 280
P P PE P F C++C LK H+ + H V G+ P ++
Sbjct: 260 PAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKN 319
Query: 281 KKSRGAGELAGTLTFSKELPKSLAG-GLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG 339
A +L G L P +G P P + + G L L PAP +
Sbjct: 320 HMKVHASKL-GPL----RAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERRE 374
Query: 340 PP 341
PP
Sbjct: 375 PP 376
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 115 GVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEE 174
G RP++ + P P+ P P P S+P+ TP PA + EE
Sbjct: 213 GAPERPLAATSAAPPPQPQPQPPP-QPEPRSVPQPEPEPEPEREATPTPAP----AAPEE 267
Query: 175 EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 206
A C +C + L+ H + KHK
Sbjct: 268 PPAPPEFRCQVCGQSFTQSWFLKGHMR--KHK 297
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 45.1 bits (105), Expect = 1e-04
Identities = 58/238 (24%), Positives = 84/238 (35%), Gaps = 48/238 (20%)
Query: 85 IEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP-VSMENGLGPAPGSPEKQPGSPSP 143
+ AA+ PG PG P PP + G G A P + + L G P PG SP
Sbjct: 43 VRAARREAASPGT--PGPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASP 100
Query: 144 PSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLY--CALCKVAVNSLSQLEAHNK 201
S + +P+ PG + K+ R + CA +A+ K
Sbjct: 101 AS--------SSSAASSPSSGRAPGAAPSAAAKSHRCPFPDCA------------KAYYK 140
Query: 202 GTKHKTILEARSGLGPI--------KAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSE 253
+ K+ L +G P K + R ++ F C +C+ +
Sbjct: 141 SSHLKSHLRTHTGERPFACDWQGCDKKFAR-SDELARHHRTHTGEKRFSCPLCSKRFTRS 199
Query: 254 VQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSP 311
L +H +RRH +P L R +R S LP SLAG PSP
Sbjct: 200 DHLAKH--ARRHPGF-----HPDLLRRPGARSTSP-------SDSLPCSLAGSPAPSP 243
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 45.1 bits (105), Expect = 1e-04
Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
GN + G+ K G PG+ PG P P G +G P GPA
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 134 PEKQPGSPSPPSIPE----------TGQGVTKGEGGTPAPASLPG 168
P+ PG PP P G G KGE G P LPG
Sbjct: 1250 PKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1294
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 94 EPGVREPGDPAPPG------STPTNGDGVAPRPVSM--ENGLGPAPG-----SPEKQPGS 140
EPG PG P PPG + GD P P GL PG P QPG
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP 809
Query: 141 PSPPSIPETGQGVTKGEGGTPAPASLPG 168
PP +P G G G P P PG
Sbjct: 810 MGPPGLPGIGVQGPPGPPGIPGPIGQPG 837
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 84 GIEAAKTRGREPGVREPGDPAP---PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ--- 137
GI +K PG+ PG P P PG G P + +E GP PG P +
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGP-PGFPGPKGEP 751
Query: 138 ----PGSPSPPSIPE-TGQGVTKGEGGTPAPASLPG 168
PG P PP +P G KG+ G P P PG
Sbjct: 752 GFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 92 GREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 150
GR+ V PGDP PG G G P GL P P P+ PG P PP P T
Sbjct: 672 GRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTP 730
Query: 151 QGVTKGEGGTPAPASLPGGSKE 172
+ G G P P PG E
Sbjct: 731 GRI--GLEGPPGPPGFPGPKGE 750
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVRE-PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG 132
KG + R G+E PG+ PG PPG GD P P + GP PG
Sbjct: 44 KGEKGERGFPGLEG------HPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-PG 96
Query: 133 SPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG--GSKEE 173
P PG+P P +P G G P P +PG G+K E
Sbjct: 97 LP-GFPGTPGLPGMP--------GHDGAPGPQGIPGCNGTKGE 130
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 99 EPGDPAPPGSTPTNG----DGV-APRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 149
EPG P PPGS G GV + + N +G P QPG P P P +
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
Query: 150 GQGVTKGEGGTPAPASLPG 168
GQ KG+ G P LPG
Sbjct: 512 GQKGEKGQAGATGPKGLPG 530
Score = 42.0 bits (97), Expect = 9e-04
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
KG + G K +PG PG P PG + GDG P + GL G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLP-GIPGNPGLPGPKGE 1224
Query: 134 P--EKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 168
P PG PP P + +G G P P PG
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 96 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 155
G PG P PPG G P P + PG P G+P PP +P G K
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQKG----EPGQPGF--GNPGPPGLP--GLSGQK 1204
Query: 156 GEGGTPAPASLPG 168
G+GG P PG
Sbjct: 1205 GDGGLPGIPGNPG 1217
Score = 37.4 bits (85), Expect = 0.021
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 94 EPGVR----EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS-PPSIPE 148
+PG+ E GDP PPG G P G+ APG P PGSP P
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSP-----GIPGAPG-PIGPPGSPGLPGKAGA 888
Query: 149 TGQGVTKGEGGTPAPASLPG 168
+G TKGE G P PG
Sbjct: 889 SGFPGTKGEMGMMGPPGPPG 908
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 99 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG 158
+PG PPG T GD P P +E P P PG P P +P GQ KG+
Sbjct: 1016 QPGLIGPPGLKGTIGDMGFPGPQGVE-----GPPGPSGVPGQPGSPGLP--GQ---KGDK 1065
Query: 159 GTPAPAS--LPG 168
G P +S LPG
Sbjct: 1066 GDPGISSIGLPG 1077
Score = 36.6 bits (83), Expect = 0.037
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGD--GVAPRPVSMEN--GLGPA 130
G + R GI+ PG G P PPG G P +S+ GL
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQ 427
Query: 131 PGSPEKQPGSPSP--PSIPETGQGVTKGEGGTPAPASLPG 168
PG+P PG P P P IP + + E G P P PG
Sbjct: 428 PGAP-GLPGPPGPAGPHIPPSDEIC---EPGPPGPPGSPG 463
Score = 36.6 bits (83), Expect = 0.037
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP--------EKQPGSPSPPSIPETGQG 152
G P PPG G P + ++GL PG P + +PG P PP +
Sbjct: 902 GPPGPPGPLGIPGRSGVPG-LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 153 VTKGEGGTPAPASLPGGS 170
+KGE G P +PG S
Sbjct: 961 GSKGEKGEPGLPGIPGVS 978
Score = 36.2 bits (82), Expect = 0.048
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----------QPG 139
+G + EPG PG NG P GL PG P + G
Sbjct: 285 KGEKGEQGEPGKRGKPGKDGENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTG 337
Query: 140 SPSPPS--IPETGQGVTKGEGGTPAPASLPGGSKE 172
P PP IP G G+T GE G LPG E
Sbjct: 338 PPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Score = 36.2 bits (82), Expect = 0.048
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 84 GIEAAKTRGREPGVREPGDPAPPG----STPTNGDGVAPRPVSMENGLGPAPGSPEKQPG 139
G AK + PG PG P PPG S P G+ P GP G PG
Sbjct: 1110 GTPGAKGQPGLPGF--PGTPGPPGPKGISGPPGNPGLPGEP-------GPVGGGGH--PG 1158
Query: 140 SPSPPSIPETGQGVTKGEGGTPAPASLPG 168
P PP G+ G+ G P PA G
Sbjct: 1159 QPGPP-----GEKGKPGQDGIPGPAGQKG 1182
Score = 35.4 bits (80), Expect = 0.081
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--------ENGLGPAPGSPEKQPGSPSPPSI 146
PG+ PG P PG G AP P + E G +PG P Q G P PP I
Sbjct: 95 PGL--PGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQ-GPPGPPGI 151
Query: 147 P----ETGQGVT------KGEGGTPAPASLPG 168
P E G + KG G P P + G
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG 183
Score = 35.4 bits (80), Expect = 0.081
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 95 PGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 149
PG + PG P PPG G P P+ GP PG P G P PP +P
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPI------GP-PGPPGLM-GPPGPPGLPGPKGNM 218
Query: 150 -----GQGVTKGEGGTPAPASLPGGSKEEE 174
G KGE G P PG E++
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Score = 35.4 bits (80), Expect = 0.081
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQP---------------- 138
PG P P G+ N G P+ E GL PG P +K+P
Sbjct: 209 PGLPGPKGNMGLNFQG--PKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDR 266
Query: 139 GSPSPPSI-----PETGQGVTKGEGGTPAPASLPGGSKE 172
G P PP I P G+ KGE G P PG E
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 35.4 bits (80), Expect = 0.081
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK--------QPGSPSPPSIP---- 147
PGD PPG G P E G PG K QPG P P P
Sbjct: 263 PGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPG 322
Query: 148 ETGQGVTKGEGGTPAPASLPG 168
E G+ KG+ G P PG
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPG 343
Score = 35.4 bits (80), Expect = 0.081
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREP-------GDPAPPGSTPTNGDGV------APRP 120
KG+ V G K PG P G P PPG +G + P
Sbjct: 1320 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1379
Query: 121 VSMENGLG--PAPGSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 168
+ + GL P P P+ PG PP P G G GG LPG
Sbjct: 1380 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG 1430
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 99 EPGDPAPPG-STPTNGDGVAPRP----VSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 152
EPG P PG S P G+ P +S + GL P P P+ PG P P I G
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL-PGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 153 VTKGEGGTPAPASLPG 168
T G+ G P P + G
Sbjct: 1027 GTIGDMGFPGPQGVEG 1042
Score = 33.9 bits (76), Expect = 0.24
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVR----EPGD----PAPPGSTPTNGDGVAPRPVSMEN 125
KG A KG+ PG EPGD P G G AP
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAP------- 569
Query: 126 GLGPAPGSPEKQ--PGSPSPPSIPETGQGVT-KGEGGTPAPASLPG 168
GL PG+P + PG P P P G+T KGE G P LPG
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEP---GGITFKGERGPPGNPGLPG 612
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVT 154
PG+ G P PPG P P+ + GL PG + G P PP + G
Sbjct: 816 PGIGVQGPPGPPG---------IPGPIG-QPGLHGIPG----EKGDPGPPGLDVPG---P 858
Query: 155 KGEGGTPAPASLPG 168
GE G+P PG
Sbjct: 859 PGERGSPGIPGAPG 872
Score = 33.1 bits (74), Expect = 0.40
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 92 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG--SPEKQPGSPSPPSIPET 149
G + EPG P PPG P + + + + E GL PG P+ G P P P
Sbjct: 938 GEKGSKGEPGLPGPPG--PMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP-- 993
Query: 150 GQGVTKGEGGTPAPASLPG 168
G G G P P PG
Sbjct: 994 GLSGQPGLPGPPGPKGNPG 1012
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 99 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIPETGQGV 153
+PG P P G + G+ P P P P P + + G P P IP G
Sbjct: 930 QPGLPGPTGEKGSKGEPGLPGP--------PGPMDPNLLGSKGEKGEPGLPGIP--GVSG 979
Query: 154 TKGEGGTPAPASLPG 168
KG G P PG
Sbjct: 980 PKGYQGLPGDPGQPG 994
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 94 EPGVREPGDPAPPG------STPTNGDGVAPRPVSM--ENGLGPAPG-----SPEKQPGS 140
EPG PG P PPG + GD P P GL PG P QPG
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP 809
Query: 141 PSPPSIPETGQGVTKGEGGTPAPASLPG 168
PP +P G G G P P PG
Sbjct: 810 MGPPGLPGIGVQGPPGPPGIPGPIGQPG 837
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 84 GIEAAKTRGREPGVREPGDPAP---PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ--- 137
GI +K PG+ PG P P PG G P + +E GP PG P +
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGP-PGFPGPKGEP 751
Query: 138 ----PGSPSPPSIPE-TGQGVTKGEGGTPAPASLPG 168
PG P PP +P G KG+ G P P PG
Sbjct: 752 GFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 92 GREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 150
GR+ V PGDP PG G G P GL P P P+ PG P PP P T
Sbjct: 672 GRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTP 730
Query: 151 QGVTKGEGGTPAPASLPGGSKE 172
+ G G P P PG E
Sbjct: 731 GRI--GLEGPPGPPGFPGPKGE 750
Score = 42.7 bits (99), Expect = 5e-04
Identities = 33/111 (29%), Positives = 38/111 (34%), Gaps = 17/111 (15%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
GN + G+ K G PG+ PG P P G +G P GPA
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 134 PEKQPGSPSPPSIPE----------------TGQGVTKGEGGTPAPASLPG 168
P+ PG PP P G G KGE G P LPG
Sbjct: 1250 PKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1300
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVRE-PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG 132
KG + R G+E PG+ PG PPG GD P P + GP PG
Sbjct: 44 KGEKGERGFPGLEG------HPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-PG 96
Query: 133 SPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG--GSKEE 173
P PG+P P +P G G P P +PG G+K E
Sbjct: 97 LP-GFPGTPGLPGMP--------GHDGAPGPQGIPGCNGTKGE 130
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 99 EPGDPAPPGSTPTNG----DGV-APRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 149
EPG P PPGS G GV + + N +G P QPG P P P +
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
Query: 150 GQGVTKGEGGTPAPASLPG 168
GQ KG+ G P LPG
Sbjct: 512 GQKGEKGQAGATGPKGLPG 530
Score = 42.0 bits (97), Expect = 9e-04
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
KG + G K +PG PG P PG + GDG P + GL G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLP-GIPGNPGLPGPKGE 1224
Query: 134 P--EKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 168
P PG PP P + +G G P P PG
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 96 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 155
G PG P PPG G P P + PG P G+P PP +P G K
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQKG----EPGQPGF--GNPGPPGLP--GLSGQK 1204
Query: 156 GEGGTPAPASLPG 168
G+GG P PG
Sbjct: 1205 GDGGLPGIPGNPG 1217
Score = 37.4 bits (85), Expect = 0.021
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 94 EPGVR----EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS-PPSIPE 148
+PG+ E GDP PPG G P G+ APG P PGSP P
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSP-----GIPGAPG-PIGPPGSPGLPGKAGA 888
Query: 149 TGQGVTKGEGGTPAPASLPG 168
+G TKGE G P PG
Sbjct: 889 SGFPGTKGEMGMMGPPGPPG 908
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 99 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG 158
+PG PPG T GD P P +E P P PG P P +P GQ KG+
Sbjct: 1016 QPGLIGPPGLKGTIGDMGFPGPQGVE-----GPPGPSGVPGQPGSPGLP--GQ---KGDK 1065
Query: 159 GTPAPAS--LPG 168
G P +S LPG
Sbjct: 1066 GDPGISSIGLPG 1077
Score = 36.6 bits (83), Expect = 0.037
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGD--GVAPRPVSMEN--GLGPA 130
G + R GI+ PG G P PPG G P +S+ GL
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQ 427
Query: 131 PGSPEKQPGSPSP--PSIPETGQGVTKGEGGTPAPASLPG 168
PG+P PG P P P IP + + E G P P PG
Sbjct: 428 PGAP-GLPGPPGPAGPHIPPSDEIC---EPGPPGPPGSPG 463
Score = 36.6 bits (83), Expect = 0.037
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP--------EKQPGSPSPPSIPETGQG 152
G P PPG G P + ++GL PG P + +PG P PP +
Sbjct: 902 GPPGPPGPLGIPGRSGVPG-LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 153 VTKGEGGTPAPASLPGGS 170
+KGE G P +PG S
Sbjct: 961 GSKGEKGEPGLPGIPGVS 978
Score = 36.2 bits (82), Expect = 0.048
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----------QPG 139
+G + EPG PG NG P GL PG P + G
Sbjct: 285 KGEKGEQGEPGKRGKPGKDGENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTG 337
Query: 140 SPSPPS--IPETGQGVTKGEGGTPAPASLPGGSKE 172
P PP IP G G+T GE G LPG E
Sbjct: 338 PPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Score = 36.2 bits (82), Expect = 0.048
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 84 GIEAAKTRGREPGVREPGDPAPPG----STPTNGDGVAPRPVSMENGLGPAPGSPEKQPG 139
G AK + PG PG P PPG S P G+ P GP G PG
Sbjct: 1110 GTPGAKGQPGLPGF--PGTPGPPGPKGISGPPGNPGLPGEP-------GPVGGGGH--PG 1158
Query: 140 SPSPPSIPETGQGVTKGEGGTPAPASLPG 168
P PP G+ G+ G P PA G
Sbjct: 1159 QPGPP-----GEKGKPGQDGIPGPAGQKG 1182
Score = 35.4 bits (80), Expect = 0.081
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--------ENGLGPAPGSPEKQPGSPSPPSI 146
PG+ PG P PG G AP P + E G +PG P Q G P PP I
Sbjct: 95 PGL--PGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQ-GPPGPPGI 151
Query: 147 P----ETGQGVT------KGEGGTPAPASLPG 168
P E G + KG G P P + G
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG 183
Score = 35.4 bits (80), Expect = 0.081
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 95 PGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 149
PG + PG P PPG G P P+ GP PG P G P PP +P
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPI------GP-PGPPGLM-GPPGPPGLPGPKGNM 218
Query: 150 -----GQGVTKGEGGTPAPASLPGGSKEEE 174
G KGE G P PG E++
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Score = 35.4 bits (80), Expect = 0.081
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQP---------------- 138
PG P P G+ N G P+ E GL PG P +K+P
Sbjct: 209 PGLPGPKGNMGLNFQG--PKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDR 266
Query: 139 GSPSPPSI-----PETGQGVTKGEGGTPAPASLPGGSKE 172
G P PP I P G+ KGE G P PG E
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 35.4 bits (80), Expect = 0.081
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK--------QPGSPSPPSIP---- 147
PGD PPG G P E G PG K QPG P P P
Sbjct: 263 PGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPG 322
Query: 148 ETGQGVTKGEGGTPAPASLPG 168
E G+ KG+ G P PG
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPG 343
Score = 35.4 bits (80), Expect = 0.081
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREP-------GDPAPPGSTPTNGDGV------APRP 120
KG+ V G K PG P G P PPG +G + P
Sbjct: 1326 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1385
Query: 121 VSMENGLG--PAPGSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 168
+ + GL P P P+ PG PP P G G GG LPG
Sbjct: 1386 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG 1436
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 99 EPGDPAPPG-STPTNGDGVAPRP----VSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 152
EPG P PG S P G+ P +S + GL P P P+ PG P P I G
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL-PGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 153 VTKGEGGTPAPASLPG 168
T G+ G P P + G
Sbjct: 1027 GTIGDMGFPGPQGVEG 1042
Score = 33.9 bits (76), Expect = 0.24
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVR----EPGD----PAPPGSTPTNGDGVAPRPVSMEN 125
KG A KG+ PG EPGD P G G AP
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAP------- 569
Query: 126 GLGPAPGSPEKQ--PGSPSPPSIPETGQGVT-KGEGGTPAPASLPG 168
GL PG+P + PG P P P G+T KGE G P LPG
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEP---GGITFKGERGPPGNPGLPG 612
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVT 154
PG+ G P PPG P P+ + GL PG + G P PP + G
Sbjct: 816 PGIGVQGPPGPPG---------IPGPIG-QPGLHGIPG----EKGDPGPPGLDVPG---P 858
Query: 155 KGEGGTPAPASLPG 168
GE G+P PG
Sbjct: 859 PGERGSPGIPGAPG 872
Score = 33.1 bits (74), Expect = 0.40
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 92 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG--SPEKQPGSPSPPSIPET 149
G + EPG P PPG P + + + + E GL PG P+ G P P P
Sbjct: 938 GEKGSKGEPGLPGPPG--PMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP-- 993
Query: 150 GQGVTKGEGGTPAPASLPG 168
G G G P P PG
Sbjct: 994 GLSGQPGLPGPPGPKGNPG 1012
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 99 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIPETGQGV 153
+PG P P G + G+ P P P P P + + G P P IP G
Sbjct: 930 QPGLPGPTGEKGSKGEPGLPGP--------PGPMDPNLLGSKGEKGEPGLPGIP--GVSG 979
Query: 154 TKGEGGTPAPASLPG 168
KG G P PG
Sbjct: 980 PKGYQGLPGDPGQPG 994
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 94 EPGVREPGDPAPPG------STPTNGDGVAPRPVSM--ENGLGPAPG-----SPEKQPGS 140
EPG PG P PPG + GD P P GL PG P QPG
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP 809
Query: 141 PSPPSIPETGQGVTKGEGGTPAPASLPG 168
PP +P G G G P P PG
Sbjct: 810 MGPPGLPGIGVQGPPGPPGIPGPIGQPG 837
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 84 GIEAAKTRGREPGVREPGDPAP---PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ--- 137
GI +K PG+ PG P P PG G P + +E GP PG P +
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGP-PGFPGPKGEP 751
Query: 138 ----PGSPSPPSIPE-TGQGVTKGEGGTPAPASLPG 168
PG P PP +P G KG+ G P P PG
Sbjct: 752 GFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
GN + G+ K G PG+ PG P P G +G P GPA
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 134 PEKQPGSPSPPSIPE-------------TGQGVTKGEGGTPAPASLPG 168
P+ PG PP P G G KGE G P LPG
Sbjct: 1250 PKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1297
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 92 GREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 150
GR+ V PGDP PG G G P GL P P P+ PG P PP P T
Sbjct: 672 GRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTP 730
Query: 151 QGVTKGEGGTPAPASLPGGSKE 172
+ G G P P PG E
Sbjct: 731 GRI--GLEGPPGPPGFPGPKGE 750
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVRE-PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG 132
KG + R G+E PG+ PG PPG GD P P + GP PG
Sbjct: 44 KGEKGERGFPGLEG------HPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-PG 96
Query: 133 SPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG--GSKEE 173
P PG+P P +P G G P P +PG G+K E
Sbjct: 97 LP-GFPGTPGLPGMP--------GHDGAPGPQGIPGCNGTKGE 130
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 99 EPGDPAPPGSTPTNG----DGV-APRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 149
EPG P PPGS G GV + + N +G P QPG P P P +
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
Query: 150 GQGVTKGEGGTPAPASLPG 168
GQ KG+ G P LPG
Sbjct: 512 GQKGEKGQAGATGPKGLPG 530
Score = 42.0 bits (97), Expect = 9e-04
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
KG + G K +PG PG P PG + GDG P + GL G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLP-GIPGNPGLPGPKGE 1224
Query: 134 P--EKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 168
P PG PP P + +G G P P PG
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 96 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 155
G PG P PPG G P P + PG P G+P PP +P G K
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQKG----EPGQPGF--GNPGPPGLP--GLSGQK 1204
Query: 156 GEGGTPAPASLPG 168
G+GG P PG
Sbjct: 1205 GDGGLPGIPGNPG 1217
Score = 37.4 bits (85), Expect = 0.021
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 94 EPGVR----EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS-PPSIPE 148
+PG+ E GDP PPG G P G+ APG P PGSP P
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSP-----GIPGAPG-PIGPPGSPGLPGKAGA 888
Query: 149 TGQGVTKGEGGTPAPASLPG 168
+G TKGE G P PG
Sbjct: 889 SGFPGTKGEMGMMGPPGPPG 908
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 99 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG 158
+PG PPG T GD P P +E P P PG P P +P GQ KG+
Sbjct: 1016 QPGLIGPPGLKGTIGDMGFPGPQGVE-----GPPGPSGVPGQPGSPGLP--GQ---KGDK 1065
Query: 159 GTPAPAS--LPG 168
G P +S LPG
Sbjct: 1066 GDPGISSIGLPG 1077
Score = 36.6 bits (83), Expect = 0.037
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGD--GVAPRPVSMEN--GLGPA 130
G + R GI+ PG G P PPG G P +S+ GL
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQ 427
Query: 131 PGSPEKQPGSPSP--PSIPETGQGVTKGEGGTPAPASLPG 168
PG+P PG P P P IP + + E G P P PG
Sbjct: 428 PGAP-GLPGPPGPAGPHIPPSDEIC---EPGPPGPPGSPG 463
Score = 36.6 bits (83), Expect = 0.037
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP--------EKQPGSPSPPSIPETGQG 152
G P PPG G P + ++GL PG P + +PG P PP +
Sbjct: 902 GPPGPPGPLGIPGRSGVPG-LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 153 VTKGEGGTPAPASLPGGS 170
+KGE G P +PG S
Sbjct: 961 GSKGEKGEPGLPGIPGVS 978
Score = 36.2 bits (82), Expect = 0.048
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----------QPG 139
+G + EPG PG NG P GL PG P + G
Sbjct: 285 KGEKGEQGEPGKRGKPGKDGENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTG 337
Query: 140 SPSPPS--IPETGQGVTKGEGGTPAPASLPGGSKE 172
P PP IP G G+T GE G LPG E
Sbjct: 338 PPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Score = 36.2 bits (82), Expect = 0.048
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 84 GIEAAKTRGREPGVREPGDPAPPG----STPTNGDGVAPRPVSMENGLGPAPGSPEKQPG 139
G AK + PG PG P PPG S P G+ P GP G PG
Sbjct: 1110 GTPGAKGQPGLPGF--PGTPGPPGPKGISGPPGNPGLPGEP-------GPVGGGGH--PG 1158
Query: 140 SPSPPSIPETGQGVTKGEGGTPAPASLPG 168
P PP G+ G+ G P PA G
Sbjct: 1159 QPGPP-----GEKGKPGQDGIPGPAGQKG 1182
Score = 35.4 bits (80), Expect = 0.081
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--------ENGLGPAPGSPEKQPGSPSPPSI 146
PG+ PG P PG G AP P + E G +PG P Q G P PP I
Sbjct: 95 PGL--PGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQ-GPPGPPGI 151
Query: 147 P----ETGQGVT------KGEGGTPAPASLPG 168
P E G + KG G P P + G
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG 183
Score = 35.4 bits (80), Expect = 0.081
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 95 PGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 149
PG + PG P PPG G P P+ GP PG P G P PP +P
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPI------GP-PGPPGLM-GPPGPPGLPGPKGNM 218
Query: 150 -----GQGVTKGEGGTPAPASLPGGSKEEE 174
G KGE G P PG E++
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Score = 35.4 bits (80), Expect = 0.081
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQP---------------- 138
PG P P G+ N G P+ E GL PG P +K+P
Sbjct: 209 PGLPGPKGNMGLNFQG--PKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDR 266
Query: 139 GSPSPPSI-----PETGQGVTKGEGGTPAPASLPGGSKE 172
G P PP I P G+ KGE G P PG E
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 35.4 bits (80), Expect = 0.081
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK--------QPGSPSPPSIP---- 147
PGD PPG G P E G PG K QPG P P P
Sbjct: 263 PGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPG 322
Query: 148 ETGQGVTKGEGGTPAPASLPG 168
E G+ KG+ G P PG
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPG 343
Score = 35.4 bits (80), Expect = 0.081
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREP-------GDPAPPGSTPTNGDGV------APRP 120
KG+ V G K PG P G P PPG +G + P
Sbjct: 1323 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1382
Query: 121 VSMENGLG--PAPGSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 168
+ + GL P P P+ PG PP P G G GG LPG
Sbjct: 1383 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG 1433
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 99 EPGDPAPPG-STPTNGDGVAPRP----VSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 152
EPG P PG S P G+ P +S + GL P P P+ PG P P I G
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL-PGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 153 VTKGEGGTPAPASLPG 168
T G+ G P P + G
Sbjct: 1027 GTIGDMGFPGPQGVEG 1042
Score = 33.9 bits (76), Expect = 0.24
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVR----EPGD----PAPPGSTPTNGDGVAPRPVSMEN 125
KG A KG+ PG EPGD P G G AP
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAP------- 569
Query: 126 GLGPAPGSPEKQ--PGSPSPPSIPETGQGVT-KGEGGTPAPASLPG 168
GL PG+P + PG P P P G+T KGE G P LPG
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEP---GGITFKGERGPPGNPGLPG 612
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 95 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVT 154
PG+ G P PPG P P+ + GL PG + G P PP + G
Sbjct: 816 PGIGVQGPPGPPG---------IPGPIG-QPGLHGIPG----EKGDPGPPGLDVPG---P 858
Query: 155 KGEGGTPAPASLPG 168
GE G+P PG
Sbjct: 859 PGERGSPGIPGAPG 872
Score = 33.1 bits (74), Expect = 0.40
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 92 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG--SPEKQPGSPSPPSIPET 149
G + EPG P PPG P + + + + E GL PG P+ G P P P
Sbjct: 938 GEKGSKGEPGLPGPPG--PMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP-- 993
Query: 150 GQGVTKGEGGTPAPASLPG 168
G G G P P PG
Sbjct: 994 GLSGQPGLPGPPGPKGNPG 1012
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 99 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIPETGQGV 153
+PG P P G + G+ P P P P P + + G P P IP G
Sbjct: 930 QPGLPGPTGEKGSKGEPGLPGP--------PGPMDPNLLGSKGEKGEPGLPGIP--GVSG 979
Query: 154 TKGEGGTPAPASLPG 168
KG G P PG
Sbjct: 980 PKGYQGLPGDPGQPG 994
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 44.7 bits (104), Expect = 1e-04
Identities = 55/224 (24%), Positives = 84/224 (37%), Gaps = 39/224 (17%)
Query: 147 PETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH- 205
PE G + G P P G S K R C +C + + L H + KH
Sbjct: 668 PEPGGSCVYCKTGQPHPRLARGESYTCGYKPFR---CEVCNYSTTTKGNLSIHMQSDKHL 724
Query: 206 KTILEARSGLG----------PIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQ 255
+ ++G G P + G P+P +P+ Q T+ CE+C+ + N
Sbjct: 725 NNVQNLQNGNGEQVFGHSAPAPNTSLSGCGTPSPSKPK---QKPTWRCEVCDYETNVARN 781
Query: 256 LKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPK-------SLAGGLL 308
L+ H++S +H + LL ++ K G EL + L G L
Sbjct: 782 LRIHMTSEKHMHNMM-----LLQQNMKQIQHNLHLGLAPAEAELYQYYLAQNIGLTGMKL 836
Query: 309 PSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG-----PPITHPLL 347
+P ++ +P L PA AA L G P I+ P L
Sbjct: 837 ENPADPQLMI-----NPFQLDPATAAALAPGLGELSPYISDPAL 875
Score = 40.8 bits (94), Expect = 0.002
Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 20/179 (11%)
Query: 108 STPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG-GTPAPASL 166
++ + A P + G + +P + +PS P P G + G G P ++
Sbjct: 562 ASASKDSATAAHPSEIARGDEDSSATPHQHGFTPSTPGTPGPGGDGSPGSGIECPKCDTV 621
Query: 167 PGGSKE--------EEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPI 218
G S+ + + L C C LEAH K E G
Sbjct: 622 LGSSRSLGGHMTMMHSRNSCKTLKCPKCNWHYKYQQTLEAHMK--------EKHPEPGGS 673
Query: 219 KAYPRLGPPTPGEPEAPAQD---RTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPN 274
Y + G P P + + F CE+CN ++ L H+ S +H + V N
Sbjct: 674 CVYCKTGQPHPRLARGESYTCGYKPFRCEVCNYSTTTKGNLSIHMQSDKHLNNVQNLQN 732
Score = 39.3 bits (90), Expect = 0.006
Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 18/192 (9%)
Query: 167 PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGP 226
P + E+ R C +CK + + L H H L+ K
Sbjct: 1482 PNFTMEKFLDPSRPYKCTVCKESFTQKNILLVHYNSVSHLHKLK--------KVLQEASS 1533
Query: 227 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGA 286
P P E + ++ + C ICNV + L+ H+ S H+ +R K +
Sbjct: 1534 PVPQETNSNTDNKPYKCSICNVAYSQSSTLEIHMRSVLHQ---------TKARAAKLEPS 1584
Query: 287 GELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPL 346
G +AG + + + S G+L S A L L+ P HP
Sbjct: 1585 GHVAGGHSIAANV-NSPGQGMLDSMSLAAVNSKDTHLDAKELNKKQTPDLISAQPAHHPP 1643
Query: 347 LHPAPGPIRTAH 358
PA ++ H
Sbjct: 1644 QSPAQIQMQLQH 1655
Score = 33.1 bits (74), Expect = 0.40
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 164 ASLPGGSKEEEEKAKRL-------LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLG 216
A + G K E + K + L C C NS+ +L H +H+ L
Sbjct: 949 AHIKEGGKSNEWRLKCIAIGNPVHLKCNACDYYTNSVDKLRLHTTNHRHEAAL------- 1001
Query: 217 PIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHR 266
K Y L E + ++C +C+ ++ L QH+ S +H+
Sbjct: 1002 --KLYKHLQKQ---EGAVNPESCYYYCAVCDYTTKVKLNLVQHVRSVKHQ 1046
Score = 30.0 bits (66), Expect = 3.4
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 300 PKSLAG------GLLPSPLAVAAVMAAAAGSP-LSLRPAPAAPLLQGPPITHPLLHPAP 351
P SL G L P + +A SP LSL AP PLLQ PP P P P
Sbjct: 3070 PSSLPGFPQNSNTLTPPGAGMLGFPTSATSSPALSLSSAPTKPLLQTPPPPPPPPPPPP 3128
Score = 28.9 bits (63), Expect = 7.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 243 CEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHK 281
C +C VK ++ + ++ HI S++H V L R K
Sbjct: 2964 CTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQLDREK 3002
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 133
+G + A+ G+E G+ + G P PG G P PV E GL +PG
Sbjct: 1404 QGEKGAKGEAGLEGPP--GKTGPIGPQGAPGKPGPDGLRG---IPGPVG-EQGLPGSPG- 1456
Query: 134 PEKQPGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 179
P+ PG PP +P G KGE G P L G E+ EK R
Sbjct: 1457 PDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDR 1503
Score = 42.7 bits (99), Expect = 5e-04
Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 131
KG+R + G+ K +PG G P PPG GD V PR + E G
Sbjct: 627 KGDRGFDGLAGLPGEKGHRGDPG--PSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLL 684
Query: 132 GSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 168
G P+ PG P PP + TG G G P PG
Sbjct: 685 G-PKGPPGPPGPPGV--TGMDGQPGPKGNVGPQGEPG 718
Score = 39.7 bits (91), Expect = 0.004
Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 65 SQSQAEAHYKGNRHARRVKGIEAAKTRGREPG-VREPGDPAPPGSTPTNGDGVAPRPVSM 123
S + E +G + KG E + PG V G P PPG GD P
Sbjct: 1194 SGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP 1253
Query: 124 ENGLGP--APGS--PEKQPGS-PSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAK 178
GP APG+ P+ PG +P ++ E G+ GE G P PG E EK +
Sbjct: 1254 PGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGE 1313
Score = 38.1 bits (87), Expect = 0.013
Identities = 34/99 (34%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGL-GPA-PGSP 134
+KG K PG+ G PPG GD P P E G+ GP+ P P
Sbjct: 1472 LKGDSGPKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGP 1529
Query: 135 EKQPGSPSPPSIPETGQGVT-----KGEGGTPAPASLPG 168
PG P PP P+ +G + KGE G P P PG
Sbjct: 1530 PGPPGLPGPPG-PKGAKGSSGPTGPKGEAGHPGPPGPPG 1567
Score = 37.4 bits (85), Expect = 0.021
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPA----PGSPEKQPGSPSPPS---IPETGQG 152
PG P G T G P P + GP P PG P PP +P G
Sbjct: 975 PGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP--GLA 1032
Query: 153 VTKGEGGTPAPASLPG 168
+G G P PA LPG
Sbjct: 1033 GKEGTKGDPGPAGLPG 1048
Score = 37.4 bits (85), Expect = 0.021
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 100 PGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSP--PSIPETGQGVTKG 156
PG P P GS G A P+ + GP P P + G+P P P G+ +G
Sbjct: 1080 PGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGP-AGRDGLQG 1138
Query: 157 EGGTPAPASLPGGSKEEEEKAK 178
G P PA G E+ +K +
Sbjct: 1139 PVGLPGPAGPVGPPGEDGDKGE 1160
Score = 36.6 bits (83), Expect = 0.037
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 150
+G V PGDP PPG G P + G PG Q GSP P E G
Sbjct: 1335 KGSPGPVGFPGDPGPPGEPGPAGQDGPPG----DKGDDGEPG----QTGSPGPTG--EPG 1384
Query: 151 QGVTKGEGGTPAPASLPGGSKEEEEKAK 178
G+ G P PA G E+ K +
Sbjct: 1385 PSGPPGKRGPPGPAGPEGRQGEKGAKGE 1412
Score = 35.4 bits (80), Expect = 0.081
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 92 GREPGVREPGDPAPPGSTPTNGD-------GVAPRPVSMENGLGPAPGSP--EKQPGSPS 142
G + G PG P P G G G+ +P N G P P E+ P P
Sbjct: 895 GEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQ 954
Query: 143 PPSIPETGQGVTKGEGGTPAPASLPG 168
P TG KG G P LPG
Sbjct: 955 GP----TGFPGPKGPPGPPGKDGLPG 976
Score = 33.9 bits (76), Expect = 0.24
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 94 EPGVR-------EPGDPAPPGSTPTNGDGVAPRPVSMENGLGP--APGSPEKQPGSPSPP 144
EPG R PG P PPG T +G P P + +GP PG P +Q G+P
Sbjct: 677 EPGPRGLLGPKGPPGPPGPPGVTGMDGQ---PGP---KGNVGPQGEPGPPGQQ-GNPGAQ 729
Query: 145 SIP----ETGQGVTKGEGGTPAPASLPG 168
+P G KG G P +PG
Sbjct: 730 GLPGPQGAIGPPGEKGPLGKPGLPGMPG 757
Score = 33.9 bits (76), Expect = 0.24
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 95 PGVREPGDPAPP----GSTPTNGDGVAPRPVSMENGLGP--APGSPEKQPGSPSPPSIPE 148
PG R P PA P G G+ P +GP APG P P + E
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448
Query: 149 TGQGVTKGEGGTPAPASLPG 168
G + G G P P PG
Sbjct: 1449 QGLPGSPGPDGPPGPMGPPG 1468
Score = 33.5 bits (75), Expect = 0.31
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 92 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEKQ--------- 137
G V E G+P G G+G P P E+G A G P +
Sbjct: 1276 GNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPK 1335
Query: 138 --------PGSPSPPSIP----ETGQGVTKGEGGTPAPASLPGGSKE 172
PG P PP P + G KG+ G P PG + E
Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE 1382
Score = 33.1 bits (74), Expect = 0.40
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 110 PTNGDGVAPRPVSMENG-LGPAPGSPEKQPGSPSPP-SIPETGQGVTKGEGGTPAPASLP 167
P G P +E G L P PE G P PP ++ TGQ GE G P LP
Sbjct: 448 PRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLP 507
Query: 168 G 168
G
Sbjct: 508 G 508
Score = 33.1 bits (74), Expect = 0.40
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 92 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP--------APGSPEKQPGSPSP 143
G + V G+P PPG G P P + +GP PG P PG+ P
Sbjct: 706 GPKGNVGPQGEPGPPGQQGNPGAQGLPGP---QGAIGPPGEKGPLGKPGLP-GMPGADGP 761
Query: 144 PSIP-ETGQGVTKGEGGTPAP 163
P P + G KG G P P
Sbjct: 762 PGHPGKEGPPGEKGGQGPPGP 782
Score = 33.1 bits (74), Expect = 0.40
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 90 TRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLG----PAPGSPEKQPGSPSPPS 145
T+G PG PPG GD P PV G P P P PG P
Sbjct: 1037 TKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP-- 1094
Query: 146 IPETGQGVTKGEGGTPAPASLPGGSKEE 173
G G G P P PG + E+
Sbjct: 1095 ---AGAAGPIGIPGRPGPQGPPGPAGEK 1119
Score = 32.7 bits (73), Expect = 0.53
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 92 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLG-PAPGSPEKQPGSPSPPSI-PET 149
G + E G+P GS G+ P P + +G P P + +PG + +
Sbjct: 1153 GEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK 1212
Query: 150 GQGVTKGEGGTPAPASLPG 168
G +G G P P L G
Sbjct: 1213 GDEGPRGFPGPPGPVGLQG 1231
Score = 32.0 bits (71), Expect = 0.90
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 43 GGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGD 102
GG +K P++S +SQA+A + R A R T GR PG
Sbjct: 528 GGGDAGSKGPMVSAQ--------ESQAQAILQQARLALRGPAGPMGLT-GR------PGP 572
Query: 103 PAPPGSTPTNGD--GVAPR-PVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGG 159
PPGS G+ V P+ P ++ GPA G P ++ + S + GQ KG+ G
Sbjct: 573 VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPA-GKPGRRGRAGSDGARGMPGQTGPKGDRG 631
Query: 160 TPAPASLPG 168
A LPG
Sbjct: 632 FDGLAGLPG 640
Score = 30.4 bits (67), Expect = 2.6
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 27/101 (26%)
Query: 94 EPGVR----EPGDPAPPGST----------PTNGDGVAPRPVSMENGLG----------P 129
EPG + + G+ PPG T P+ DG P P + G P
Sbjct: 1163 EPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG-EPGPRGQQGLFGQKGDEGPRGFP 1221
Query: 130 APGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGS 170
P P G P PP E G+ G+ G P P G S
Sbjct: 1222 GPPGPVGLQGLPGPPG--EKGETGDVGQMGPPGPPGPRGPS 1260
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 68 QAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGL 127
Q E KG R R KG +PG EPG P P G T +G P PV
Sbjct: 1138 QGEPGVKGPRGERGEKG------ESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1189
Query: 128 G-PAPGSPEKQPGS---------PSPPSIP-ETGQGVTKGEGGTPAPASLPGGSKEEEEK 176
G P G P Q G+ P P P TG+ G G PA PG + K
Sbjct: 1190 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 177 AKR 179
+
Sbjct: 1250 GAK 1252
Score = 40.0 bits (92), Expect = 0.003
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 131
KG+R + G+ K + G + G P PPG GD + PR + E+G
Sbjct: 469 KGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLL 526
Query: 132 GSPEKQPGSPSPP-------------SIPETGQGVTKGEGGTPAPASLPG 168
G P+ PG P PP S+ G+ G+ GTP LPG
Sbjct: 527 G-PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 575
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ-PGSPSPPSIPET 149
+G E PG PG G G P GP + EK PG P I T
Sbjct: 916 KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPT 973
Query: 150 GQGVTKGEGGTPAPASLPGGSKEEEEKAK 178
G+ +G G P PA PG + E+ +K +
Sbjct: 974 GRDGVQGPVGLPGPAGPPGVAGEDGDKGE 1002
Score = 38.9 bits (89), Expect = 0.007
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 90 TRGREPGVREPGDPAP---PGST-PTNGDGVAPRPVSMENGLGPAPGSPEKQ-------- 137
+ GR+ G GDP PG T P G A +P +GL PGS +Q
Sbjct: 1242 SEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP--DGLRGLPGSVGQQGRPGATGQ 1299
Query: 138 ---PGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 179
PG PP +P G KGE G P L G E+ EK R
Sbjct: 1300 AGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1345
Score = 37.0 bits (84), Expect = 0.028
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 83 KGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS 142
+G + AK E G EPG P PG T NG P P+ G +PGS +Q G +
Sbjct: 1198 RGQDGAKGDRGEDG--EPGQPGSPGPTGENGP---PGPLGKRGPAG-SPGSEGRQGGKGA 1251
Query: 143 PPSIPETGQGVTKGEGGTPAPASLPG 168
G G G PA PG
Sbjct: 1252 KGDPGAIGAPGKTGPVGPAGPAGKPG 1277
Score = 36.6 bits (83), Expect = 0.037
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEK 136
V+G++ + G + + G+P PPG T G P P E G PG P
Sbjct: 540 VRGMDGPQ--GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-G 596
Query: 137 QPGSPSPPSIP-ETGQGVTKGEGGTPAP 163
PGS PP P + G TKG G P
Sbjct: 597 MPGSDGPPGHPGKEGPPGTKGNQGPSGP 624
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP---------VSMENGLGP-AP 131
++G AK PG+ G PPG GD P P + + GP P
Sbjct: 1314 LRGDAGAKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1371
Query: 132 GSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 168
G P PG P TG G KGE G P PG
Sbjct: 1372 GGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1409
Score = 35.8 bits (81), Expect = 0.062
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIP----ETGQ 151
GDP PPG+ +G R E GL G P E G P P P G
Sbjct: 881 GDPGPPGAPGKDGP-AGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGS 939
Query: 152 GVTKGEGGTPAPASLPGGSKEE 173
G G G P P PG + E+
Sbjct: 940 GGPIGPPGRPGPQGPPGAAGEK 961
Score = 33.9 bits (76), Expect = 0.24
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSPPSIP-- 147
+G V G P PPG G A P G+G P + +PG P I
Sbjct: 1081 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1140
Query: 148 -----ETGQGVTKGEGGTPAPASLPG 168
G+ KGE G P PG
Sbjct: 1141 PGVKGPRGERGEKGESGQPGEPGPPG 1166
Score = 32.0 bits (71), Expect = 0.90
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-----DGVAPRPVSMENGLGP 129
G + AR + G + G R G P G+T +G G P E GL P
Sbjct: 737 GEKGARGLSGKSGPRGERGPTGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-P 793
Query: 130 APGSPEKQPGSPSPPSIP----------ETGQGVTKGEGGTPAPASLPG 168
P P PG PP P + G+ +G+ G P P + G
Sbjct: 794 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 842
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 94 EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 152
E GV PG+ P G PT DGV PV + P P P G + + GQ
Sbjct: 960 EKGV--PGEKGPIG--PTGRDGVQG-PVGL-----PGPAGPPGVAGEDGDKGEVGDPGQK 1009
Query: 153 VTKGEGGTPAPASLPG 168
TKG G P PG
Sbjct: 1010 GTKGNKGEHGPPGPPG 1025
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 68 QAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGL 127
Q E KG R R KG +PG EPG P P G T +G P PV
Sbjct: 1117 QGEPGVKGPRGERGEKG------ESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1168
Query: 128 G-PAPGSPEKQPGS---------PSPPSIP-ETGQGVTKGEGGTPAPASLPGGSKEEEEK 176
G P G P Q G+ P P P TG+ G G PA PG + K
Sbjct: 1169 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 177 AKR 179
+
Sbjct: 1229 GAK 1231
Score = 40.0 bits (92), Expect = 0.003
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 131
KG+R + G+ K + G + G P PPG GD + PR + E+G
Sbjct: 448 KGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLL 505
Query: 132 GSPEKQPGSPSPP-------------SIPETGQGVTKGEGGTPAPASLPG 168
G P+ PG P PP S+ G+ G+ GTP LPG
Sbjct: 506 G-PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 554
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ-PGSPSPPSIPET 149
+G E PG PG G G P GP + EK PG P I T
Sbjct: 895 KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPT 952
Query: 150 GQGVTKGEGGTPAPASLPGGSKEEEEKAK 178
G+ +G G P PA PG + E+ +K +
Sbjct: 953 GRDGVQGPVGLPGPAGPPGVAGEDGDKGE 981
Score = 38.9 bits (89), Expect = 0.007
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 90 TRGREPGVREPGDPAP---PGST-PTNGDGVAPRPVSMENGLGPAPGSPEKQ-------- 137
+ GR+ G GDP PG T P G A +P +GL PGS +Q
Sbjct: 1221 SEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP--DGLRGLPGSVGQQGRPGATGQ 1278
Query: 138 ---PGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 179
PG PP +P G KGE G P L G E+ EK R
Sbjct: 1279 AGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1324
Score = 37.0 bits (84), Expect = 0.028
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 83 KGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS 142
+G + AK E G EPG P PG T NG P P+ G +PGS +Q G +
Sbjct: 1177 RGQDGAKGDRGEDG--EPGQPGSPGPTGENGP---PGPLGKRGPAG-SPGSEGRQGGKGA 1230
Query: 143 PPSIPETGQGVTKGEGGTPAPASLPG 168
G G G PA PG
Sbjct: 1231 KGDPGAIGAPGKTGPVGPAGPAGKPG 1256
Score = 36.6 bits (83), Expect = 0.037
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEK 136
V+G++ + G + + G+P PPG T G P P E G PG P
Sbjct: 519 VRGMDGPQ--GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-G 575
Query: 137 QPGSPSPPSIP-ETGQGVTKGEGGTPAP 163
PGS PP P + G TKG G P
Sbjct: 576 MPGSDGPPGHPGKEGPPGTKGNQGPSGP 603
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP---------VSMENGLGP-AP 131
++G AK PG+ G PPG GD P P + + GP P
Sbjct: 1293 LRGDAGAKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1350
Query: 132 GSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 168
G P PG P TG G KGE G P PG
Sbjct: 1351 GGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1388
Score = 35.8 bits (81), Expect = 0.062
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIP----ETGQ 151
GDP PPG+ +G R E GL G P E G P P P G
Sbjct: 860 GDPGPPGAPGKDGP-AGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGS 918
Query: 152 GVTKGEGGTPAPASLPGGSKEE 173
G G G P P PG + E+
Sbjct: 919 GGPIGPPGRPGPQGPPGAAGEK 940
Score = 33.9 bits (76), Expect = 0.24
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSPPSIP-- 147
+G V G P PPG G A P G+G P + +PG P I
Sbjct: 1060 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1119
Query: 148 -----ETGQGVTKGEGGTPAPASLPG 168
G+ KGE G P PG
Sbjct: 1120 PGVKGPRGERGEKGESGQPGEPGPPG 1145
Score = 32.0 bits (71), Expect = 0.90
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-----DGVAPRPVSMENGLGP 129
G + AR + G + G R G P G+T +G G P E GL P
Sbjct: 716 GEKGARGLSGKSGPRGERGPTGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-P 772
Query: 130 APGSPEKQPGSPSPPSIP----------ETGQGVTKGEGGTPAPASLPG 168
P P PG PP P + G+ +G+ G P P + G
Sbjct: 773 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 821
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 94 EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 152
E GV PG+ P G PT DGV PV + P P P G + + GQ
Sbjct: 939 EKGV--PGEKGPIG--PTGRDGVQG-PVGL-----PGPAGPPGVAGEDGDKGEVGDPGQK 988
Query: 153 VTKGEGGTPAPASLPG 168
TKG G P PG
Sbjct: 989 GTKGNKGEHGPPGPPG 1004
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 68 QAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGL 127
Q E KG R R KG +PG EPG P P G T +G P PV
Sbjct: 1224 QGEPGVKGPRGERGEKG------ESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1275
Query: 128 G-PAPGSPEKQPGS---------PSPPSIP-ETGQGVTKGEGGTPAPASLPGGSKEEEEK 176
G P G P Q G+ P P P TG+ G G PA PG + K
Sbjct: 1276 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 177 AKR 179
+
Sbjct: 1336 GAK 1338
Score = 40.0 bits (92), Expect = 0.003
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 74 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 131
KG+R + G+ K + G + G P PPG GD + PR + E+G
Sbjct: 555 KGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLL 612
Query: 132 GSPEKQPGSPSPP-------------SIPETGQGVTKGEGGTPAPASLPG 168
G P+ PG P PP S+ G+ G+ GTP LPG
Sbjct: 613 G-PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 661
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ-PGSPSPPSIPET 149
+G E PG PG G G P GP + EK PG P I T
Sbjct: 1002 KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPT 1059
Query: 150 GQGVTKGEGGTPAPASLPGGSKEEEEKAK 178
G+ +G G P PA PG + E+ +K +
Sbjct: 1060 GRDGVQGPVGLPGPAGPPGVAGEDGDKGE 1088
Score = 38.9 bits (89), Expect = 0.007
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 90 TRGREPGVREPGDPAP---PGST-PTNGDGVAPRPVSMENGLGPAPGSPEKQ-------- 137
+ GR+ G GDP PG T P G A +P +GL PGS +Q
Sbjct: 1328 SEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP--DGLRGLPGSVGQQGRPGATGQ 1385
Query: 138 ---PGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 179
PG PP +P G KGE G P L G E+ EK R
Sbjct: 1386 AGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1431
Score = 37.0 bits (84), Expect = 0.028
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 83 KGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS 142
+G + AK E G EPG P PG T NG P P+ G +PGS +Q G +
Sbjct: 1284 RGQDGAKGDRGEDG--EPGQPGSPGPTGENGP---PGPLGKRGPAG-SPGSEGRQGGKGA 1337
Query: 143 PPSIPETGQGVTKGEGGTPAPASLPG 168
G G G PA PG
Sbjct: 1338 KGDPGAIGAPGKTGPVGPAGPAGKPG 1363
Score = 36.6 bits (83), Expect = 0.037
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEK 136
V+G++ + G + + G+P PPG T G P P E G PG P
Sbjct: 626 VRGMDGPQ--GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-G 682
Query: 137 QPGSPSPPSIP-ETGQGVTKGEGGTPAP 163
PGS PP P + G TKG G P
Sbjct: 683 MPGSDGPPGHPGKEGPPGTKGNQGPSGP 710
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 82 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP---------VSMENGLGP-AP 131
++G AK PG+ G PPG GD P P + + GP P
Sbjct: 1400 LRGDAGAKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1457
Query: 132 GSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 168
G P PG P TG G KGE G P PG
Sbjct: 1458 GGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1495
Score = 35.8 bits (81), Expect = 0.062
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 101 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIP----ETGQ 151
GDP PPG+ +G R E GL G P E G P P P G
Sbjct: 967 GDPGPPGAPGKDGP-AGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGS 1025
Query: 152 GVTKGEGGTPAPASLPGGSKEE 173
G G G P P PG + E+
Sbjct: 1026 GGPIGPPGRPGPQGPPGAAGEK 1047
Score = 33.9 bits (76), Expect = 0.24
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 91 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSPPSIP-- 147
+G V G P PPG G A P G+G P + +PG P I
Sbjct: 1167 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1226
Query: 148 -----ETGQGVTKGEGGTPAPASLPG 168
G+ KGE G P PG
Sbjct: 1227 PGVKGPRGERGEKGESGQPGEPGPPG 1252
Score = 32.0 bits (71), Expect = 0.90
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 75 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-----DGVAPRPVSMENGLGP 129
G + AR + G + G R G P G+T +G G P E GL P
Sbjct: 823 GEKGARGLSGKSGPRGERGPTGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-P 879
Query: 130 APGSPEKQPGSPSPPSIP----------ETGQGVTKGEGGTPAPASLPG 168
P P PG PP P + G+ +G+ G P P + G
Sbjct: 880 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 928
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 94 EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 152
E GV PG+ P G PT DGV PV + P P P G + + GQ
Sbjct: 1046 EKGV--PGEKGPIG--PTGRDGVQG-PVGL-----PGPAGPPGVAGEDGDKGEVGDPGQK 1095
Query: 153 VTKGEGGTPAPASLPG 168
TKG G P PG
Sbjct: 1096 GTKGNKGEHGPPGPPG 1111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,282,240
Number of Sequences: 37866
Number of extensions: 1383083
Number of successful extensions: 14982
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 1034
Number of HSP's that attempted gapping in prelim test: 8970
Number of HSP's gapped (non-prelim): 5508
length of query: 366
length of database: 18,247,518
effective HSP length: 104
effective length of query: 262
effective length of database: 14,309,454
effective search space: 3749076948
effective search space used: 3749076948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.