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Search of human proteins with 239757987
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 913 0.0
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 722 0.0
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 507 e-144
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 201 8e-52
gi|163965366 nascent polypeptide-associated complex alpha subuni... 68 2e-11
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 64 3e-10
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 63 6e-10
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 62 1e-09
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 61 2e-09
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 60 4e-09
gi|118402590 myosin XV [Homo sapiens] 59 7e-09
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 59 7e-09
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 59 7e-09
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 59 7e-09
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 59 7e-09
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 59 9e-09
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 59 1e-08
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 59 1e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 58 2e-08
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 57 3e-08
gi|18959210 WIRE protein [Homo sapiens] 56 6e-08
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-07
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 55 1e-07
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 55 1e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 55 1e-07
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 55 1e-07
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 55 1e-07
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 55 1e-07
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 55 1e-07
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 55 1e-07
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 913 bits (2359), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MEEFTEGATFLTPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENAD 60
MEEFTEGATFLTPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENAD
Sbjct: 1 MEEFTEGATFLTPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENAD 60
Query: 61 TARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAP 120
TARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAP
Sbjct: 61 TARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAP 120
Query: 121 GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGR 180
GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGR
Sbjct: 121 GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGR 180
Query: 181 RLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLR 240
RLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLR
Sbjct: 181 RLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLR 240
Query: 241 PARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCA 300
PARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCA
Sbjct: 241 PARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCA 300
Query: 301 LPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPL 360
LPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPL
Sbjct: 301 LPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPL 360
Query: 361 PRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPA 420
PRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPA
Sbjct: 361 PRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPA 420
Query: 421 SLSLPDLVFTSVGSSLVICLVPTPL 445
SLSLPDLVFTSVGSSLVICLVPTPL
Sbjct: 421 SLSLPDLVFTSVGSSLVICLVPTPL 445
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 722 bits (1864), Expect = 0.0
Identities = 358/389 (92%), Positives = 361/389 (92%)
Query: 57 ENADTARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEG 116
ENADTARLFGT VYTFEVLGALPPDRSPTPRSRVSPGVT LAVGPGNP RCQRSGVPYEG
Sbjct: 10 ENADTARLFGTAVYTFEVLGALPPDRSPTPRSRVSPGVTSLAVGPGNPTRCQRSGVPYEG 69
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGA 176
PGAPGGQQLRKSRARLPRTR GREDA V RNRDPAEPGSLRPTSLGFPARAGQG+VQGA
Sbjct: 70 PGAPGGQQLRKSRARLPRTRQGREDAGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGA 129
Query: 177 APGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPG 236
APGR+LRGEPKTPPGRSGPSGGVRSGAGHRAA AEHQLGAGFSVRNGPGPPARLPPAPPG
Sbjct: 130 APGRKLRGEPKTPPGRSGPSGGVRSGAGHRAAAAEHQLGAGFSVRNGPGPPARLPPAPPG 189
Query: 237 PPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFT 296
P LRPARP P P TCEPPSRKLPPPLPLCRSRWVLAPPP VRPRLRVLTPP
Sbjct: 190 PLLRPARPPRPYFPRPRTPPTCEPPSRKLPPPLPLCRSRWVLAPPPPVRPRLRVLTPPLA 249
Query: 297 LLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCS 356
L CALPERGSRTPSTRSAVL RVAGLGTELTLTPSSRRAHGSH LSSERQAAPTRAFCS
Sbjct: 250 LRCALPERGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHALSSERQAAPTRAFCS 309
Query: 357 ADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLT 416
ADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALA GAPRGRTPSP PGPAPALQPY+LT
Sbjct: 310 ADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALARGAPRGRTPSPRPGPAPALQPYALT 369
Query: 417 RFPASLSLPDLVFTSVGSSLVICLVPTPL 445
RFPASLSLPDLVFTSVGSSLVICLVPTPL
Sbjct: 370 RFPASLSLPDLVFTSVGSSLVICLVPTPL 398
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 507 bits (1306), Expect = e-144
Identities = 285/452 (63%), Positives = 301/452 (66%), Gaps = 57/452 (12%)
Query: 1 MEEFTEGATFLTPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENAD 60
MEEF EGATFLTPYKVLATCQAPFPY+VS QLPTLDKQETLVAEEKRGWKQRGRNG
Sbjct: 1 MEEFREGATFLTPYKVLATCQAPFPYLVSVQLPTLDKQETLVAEEKRGWKQRGRNG---- 56
Query: 61 TARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAP 120
PG + + G P
Sbjct: 57 ---------------------------------------APGTQRGVREVGSPTRDQELR 77
Query: 121 GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGF---PARAG-QGQVQGA 176
G ++ P G + G P PG P +L P +AG + ++QG
Sbjct: 78 AGSSCGRAARGFPEPGRGGKTQKWGGGTGTPQSPGPCAPQALASLLGPGKAGCRTRLQGG 137
Query: 177 APGRRLRGEPKTPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPG-PPARLPPA 233
+ G P+ PG GP+ V G G R L PG PPA L P
Sbjct: 138 SSG----ASPRRLPGGRGPAAAFAVEPGTGQRPRNT--SLAQASRSGTVPGLPPASLQPL 191
Query: 234 PPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTP 293
P L P PH+PTSRGPGRLLTCEPPSRKLPPPLP CRSRWVLAPPPTVRPRLRVLTP
Sbjct: 192 RL-PYLAPPGPHDPTSRGPGRLLTCEPPSRKLPPPLPPCRSRWVLAPPPTVRPRLRVLTP 250
Query: 294 PFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRA 353
P L ALPERGSRTPSTRSAVL RVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRA
Sbjct: 251 PLALRRALPERGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRA 310
Query: 354 FCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPY 413
FCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPY
Sbjct: 311 FCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPY 370
Query: 414 SLTRFPASLSLPDLVFTSVGSSLVICLVPTPL 445
+LTRFPASLSLPDLVFTSVGSSLVICLVPTPL
Sbjct: 371 TLTRFPASLSLPDLVFTSVGSSLVICLVPTPL 402
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 201 bits (512), Expect = 8e-52
Identities = 129/293 (44%), Positives = 144/293 (49%), Gaps = 57/293 (19%)
Query: 1 MEEFTEGATFLTPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENAD 60
MEEF EGATFLTPYKVLATCQAPFPYIVS QLPTLDKQETLVAEE+RGWKQRGRNG
Sbjct: 1 MEEFREGATFLTPYKVLATCQAPFPYIVSVQLPTLDKQETLVAEERRGWKQRGRNG---- 56
Query: 61 TARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAP 120
PG + + G P
Sbjct: 57 ---------------------------------------APGTQRGVREVGSPTRDQEIR 77
Query: 121 GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGF---PARAG-QGQVQGA 176
G ++ P G + G P PG P +L P +AG + ++QG
Sbjct: 78 AGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGG 137
Query: 177 APGRRLRGEPKTPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPG-PPARLPPA 233
+ G P+ PG GP+ V G G R L PG PPA L P
Sbjct: 138 SSG----ASPRRLPGGRGPAAAFAVEPGTGQRPRNT--SLAQASRSGTVPGLPPASLQPL 191
Query: 234 PPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRP 286
P P PH+PTSRGPGRLLT EPPSRKLPPPLPLCRSRWVLAPPP P
Sbjct: 192 RV-PYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
Score = 49.3 bits (116), Expect = 7e-06
Identities = 84/297 (28%), Positives = 106/297 (35%), Gaps = 53/297 (17%)
Query: 145 RGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAG 204
RGRN P +R +G P R + + G++ GR RG P+ PGR G + G G
Sbjct: 52 RGRNGAPGTQRGVR--EVGSPTRDQEIRA-GSSCGRAARGFPE--PGRGGKTQEWGGGTG 106
Query: 205 HRAATAEHQLGAGFSVRNGPGPP---ARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPP 261
+ A S+ GPG ARL G R P RGP EP
Sbjct: 107 TPQSPGPCAPQALASLL-GPGKAGCRARLQGGSSGASPRRL----PGGRGPAAAFAVEPG 161
Query: 262 SRKLPPPLPLC---RSRWVLAPPPTVRPRLRV--LTPPFTLLCALPERGSRTPSTRSAVL 316
+ + P L RS V PP LRV PP G P++R
Sbjct: 162 TGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPP----------GPHDPTSR---- 207
Query: 317 VDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQ 376
G G LT P SR+ PL R P PP P+ P P A
Sbjct: 208 -----GPGRLLTREPPSRKLPPPLPLCRSRWVLA----------PPPP---PAPPGPNAA 249
Query: 377 GQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPASLSLPDLVFTSVG 433
+P RA L R P GP P ++ + P LP +VF + G
Sbjct: 250 AHPPLRPP--RARLQDPVDPERCPG-GPSRGPGHGTHAHSELPTCTRLPSVVFRASG 303
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 67.8 bits (164), Expect = 2e-11
Identities = 97/372 (26%), Positives = 130/372 (34%), Gaps = 57/372 (15%)
Query: 80 PDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGR 139
P +PTP + P G GP P P P +P G S P T P
Sbjct: 936 PKGAPTPPAATPPSPKG---GPATPSPKWAPTPPAATPPSPKGGPATPSPKGAP-TPPAA 991
Query: 140 EDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRL--RGEPKTPPGRSGPSG 197
+ +G P+ G+ P ++ P+ G G P +P G +
Sbjct: 992 TPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATP 1051
Query: 198 GVRSGAGHRAATAEHQLG--AGFSVRNGPGPPARLPPAPPGPPLRPA---RPHNPTSRGP 252
+ AAT G A S++ P PPA PP+P G P P+ P P + P
Sbjct: 1052 LPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPP 1111
Query: 253 ---GRLLTCEPPSRKLP------PPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPE 303
G L T PP + P PP P + PPP P TPP P+
Sbjct: 1112 SPKGGLAT--PPHKGAPTTPAATPPSP---KGGLATPPPKGAPTTPAATPP------SPK 1160
Query: 304 RGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRP 363
G TP + G T TP S + + P + APT P P
Sbjct: 1161 GGLATPPPK---------GAPTTPAATPPSPKGGLATP---SPKGAPT------TPAATP 1202
Query: 364 PSFVPSLPSPQAQG---QAVRQPRLLRAALALGAPRG--RTPS---PGPGPAPALQPYSL 415
PS L +P +G P + LA +P+G TP+ P P PA P
Sbjct: 1203 PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKG 1262
Query: 416 TRFPASLSLPDL 427
P + + P L
Sbjct: 1263 APTPPAATPPSL 1274
Score = 61.2 bits (147), Expect = 2e-09
Identities = 95/390 (24%), Positives = 140/390 (35%), Gaps = 65/390 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP +PTP + P + G G P P +P G P T P
Sbjct: 1259 PPKGAPTPPAATPPSLKG---GLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAP-TPPA 1314
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGG 198
+ +G P G+ P ++ P+ G + P + G P TP + GP+
Sbjct: 1315 ATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSK--GGPTTPSSKEGPTPP 1372
Query: 199 VRSGAGHRAATAEHQLGAGFSVRNGPGPPARLP--PAPPGPPLRPARPHNPTSRGPGRLL 256
AAT H+ G + P P R P P+P G P PA + P +
Sbjct: 1373 --------AATPSHKGGPAMT----PPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPV 1420
Query: 257 TCE----PPSRKLPPP----LPLCRSRWVLAP---PPTVR----PRLRVLTPPFTLLCAL 301
T E P L PP + L ++ AP P T P L +TPP
Sbjct: 1421 TREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPA 1480
Query: 302 PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCS----A 357
P++ + + S + A G T + PSS + + P S APT S A
Sbjct: 1481 PKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPA 1540
Query: 358 DPLPR----PPSF-------VPSLPSPQ-----AQGQAVRQPRLLRAALALGAPRGR--- 398
P+ PP+ P++P+P+ + P + + GAP +
Sbjct: 1541 TLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELL 1600
Query: 399 ------TPSPGPGPA-PALQPYSLTRFPAS 421
+PSP P PA+ P S + PA+
Sbjct: 1601 IPPAVTSPSPKEAPTPPAVTPPSPEKGPAT 1630
Score = 57.0 bits (136), Expect = 3e-08
Identities = 90/380 (23%), Positives = 121/380 (31%), Gaps = 52/380 (13%)
Query: 75 LGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPR 134
L PP +PT + P G P +PK + P P +P G S P
Sbjct: 1163 LATPPPKGAPTTPAATPPSPKGGLATP-SPKGAPTT--PAATPPSPKGGLATPSPKGAPT 1219
Query: 135 TRPGREDA-----AVRGRNRDPAEPGSLRPTSLGFPARAGQ--GQVQGAAPGRRLRGEPK 187
T + A P P + P+ G PA AA L+G
Sbjct: 1220 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLA 1279
Query: 188 TPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNP 247
TPP + P+ V + + A + P PPA PP+P G P P P
Sbjct: 1280 TPPHKGAPNPAVVTPPSPKGGPATSP------PKGAPTPPAATPPSPKGSPGTPPPKGAP 1333
Query: 248 TSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAP----------PPTVRPRLR---VLTPP 294
T PPS K P LP P PP P + +TPP
Sbjct: 1334 TPP------AVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPP 1387
Query: 295 FTLLCALPERGSRTPSTRSAVLVDRVAGLG-TELTLTPSSRRAHGSHPLSSERQAAPTRA 353
P+RG PS + V L + TP +R + A T
Sbjct: 1388 ------SPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV 1441
Query: 354 FCSADPLPRPPSFVPSLPS-------PQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGP 406
P P P+ PS P + ++P + +P+ +P P
Sbjct: 1442 SLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMG 1501
Query: 407 APALQ---PYSLTRFPASLS 423
AP L P S PA+ S
Sbjct: 1502 APTLPAVIPSSPKEVPATPS 1521
Score = 53.5 bits (127), Expect = 4e-07
Identities = 65/232 (28%), Positives = 84/232 (36%), Gaps = 46/232 (19%)
Query: 186 PKTPPGRSGPSGGVRSGAGH--RAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPAR 243
P TP + P+ + S + RA A + A S + P PPA PP+P G P P+
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959
Query: 244 PHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPE 303
PT PPS K P P P P TPP P+
Sbjct: 960 KWAPTPP------AATPPSPKGGP----------ATPSPKGAPTPPAATPP------SPK 997
Query: 304 RGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPT------RAFCSA 357
G TPS + A V PS + + + P P + +A
Sbjct: 998 GGPATPSPKGAPTPPAVT--------PPSPKGSPAATPFPKGASTPPAATPPSPKGSPAA 1049
Query: 358 DPLPR--PPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPA 407
PLP+ P + +LPSP+ G A P L A P PSP GPA
Sbjct: 1050 TPLPKGAPTTPAATLPSPKG-GPAT--PSLKGAPT---PPAATPPSPKGGPA 1095
Score = 40.0 bits (92), Expect = 0.004
Identities = 89/389 (22%), Positives = 130/389 (33%), Gaps = 70/389 (17%)
Query: 83 SPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEG--PGAPGGQQLRKSRARLPRTRPGRE 140
+P+P++ +P T L + P PK +P G PG + + A P +E
Sbjct: 711 APSPQNTCAPLAT-LVLAPEIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKE 769
Query: 141 -DAAVRGRNRDPAEPGSLR-----PTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGR-S 193
G + + G+L P+ LG + P ++ P TP G S
Sbjct: 770 CPTEDSGASATASSKGTLTYLADSPSPLGVSVSPQTKR----PPTKKGSAGPDTPIGNLS 825
Query: 194 GPSGGVRSG---------AGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARP 244
P V + G + + A S + P P A P +P G L P
Sbjct: 826 SPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKET 885
Query: 245 HNPT----------------SRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRL 288
P+ + P +T P + P P +P P P
Sbjct: 886 PTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAP---KGIPASPSPKGAPTP 942
Query: 289 RVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQA 348
TPP P+ G TPS + A T TP S + P + +
Sbjct: 943 PAATPP------SPKGGPATPSPKWA---------PTPPAATPPSPK---GGPATPSPKG 984
Query: 349 APTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSP-GPGPA 407
APT + P P P+ PSP + P + G+P TP P G
Sbjct: 985 APTPPAAT----PPSPKGGPATPSP----KGAPTPPAVTPPSPKGSP-AATPFPKGASTP 1035
Query: 408 PALQPYSLTRFPASLSLPDLVFTSVGSSL 436
PA P S PA+ LP T+ ++L
Sbjct: 1036 PAATPPSPKGSPAATPLPKGAPTTPAATL 1064
Score = 38.9 bits (89), Expect = 0.010
Identities = 71/345 (20%), Positives = 111/345 (32%), Gaps = 54/345 (15%)
Query: 78 LPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRP 137
LP P+P+ +P + +PK+ + P P P + S +P T
Sbjct: 1467 LPAVTPPSPKEPPAPKQVATS---SSPKKAPATPAPMGAPTLPA--VIPSSPKEVPATPS 1521
Query: 138 GREDA-AVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPS 196
R D A P +L P P + + P TP + S
Sbjct: 1522 SRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASS 1581
Query: 197 GGVRSGAGHRAATAEHQL-----GAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSR- 250
+ + ++ A + +L S + P PPA PP+P P PA PTS
Sbjct: 1582 PPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPP 1641
Query: 251 -GPGRL---------LTCEP-----------PSRKLPPPL------PLCRSRWVLAPPPT 283
P L +TC+ P++K P L P S ++ P
Sbjct: 1642 VTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTR 1701
Query: 284 VRPRLRVLTPPFTLLCALP--ERGSRTP-------------STRSAVLVDRVAGLGTELT 328
P+ + + +C P + GS+ P S + A +
Sbjct: 1702 KGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGP 1761
Query: 329 LTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSP 373
L P +A ++ + P S P PP +P PSP
Sbjct: 1762 LAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSP 1806
Score = 30.8 bits (68), Expect = 2.6
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 42/170 (24%)
Query: 301 LPERGSRTPSTRSAVLVDRVAGLGTE-LTLTPSSRRAHGSHPLSSERQAAP--TRAFCSA 357
LP+ + T + + A LG TL P A PLS+ QA+P + + ++
Sbjct: 16 LPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIAS 75
Query: 358 DPL------------------PRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAP---- 395
PL P P+F+P+L P + AALAL +P
Sbjct: 76 TPLEVPFPQSSSGTALPLGTAPEAPTFLPNLIGPP----------ISPAALALASPMIAP 125
Query: 396 --RGRTPSPGPGPAPALQPYSLTR---FPASL--SLPDLVFTSVGSSLVI 438
+G S P AL P+S+ + FP +L S P + GS + +
Sbjct: 126 TLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLTSPPSVAVAESGSVITL 175
Score = 29.6 bits (65), Expect = 5.8
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 364 PSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPASLS 423
P+ LP PQA+ + L ALG P G T P PAP P S +
Sbjct: 10 PATEQELPQPQAETAVLPMSSALSVTAALGQP-GPTLPPPCSPAPQQCPLSAANQASPFP 68
Query: 424 LPDLV 428
P +
Sbjct: 69 SPSTI 73
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 63.9 bits (154), Expect = 3e-10
Identities = 96/366 (26%), Positives = 136/366 (37%), Gaps = 59/366 (16%)
Query: 82 RSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGRED 141
RS TP R S T G RS P R+SR+R P R GR
Sbjct: 595 RSRTPTRRRSRSRTPARRGRS------RSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR 648
Query: 142 AAV-----RGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPP-GRSGP 195
+ R R+R PA G R + PAR G+ + P RR R +TP GRS
Sbjct: 649 SRTPARRGRSRSRTPARRGRSRSRT---PARRS-GRSRSRTPARRGRSRSRTPRRGRSRS 704
Query: 196 SGGVRSGAGH-RAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHN-------- 246
VR G H R + G+ +N R + P ++ +R +
Sbjct: 705 RSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSS 764
Query: 247 PTSRGPGRL-----LTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL 301
P S+ RL L+ P K P RSR + +P+ + TPP +
Sbjct: 765 PRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSR-----SGSSQPKAKSRTPPRRSRSSS 819
Query: 302 ---PERGSRTPSTRS-----------AVLVDRVAGL----GTELTLTPSSRRAHGSHPLS 343
P++ S+TPS +S + R + E ++TP R S P
Sbjct: 820 SPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDP 879
Query: 344 SERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPG 403
+ P+R CS PR S P SP QP++ A+ +PR R+ S
Sbjct: 880 ELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSP--QPKV----KAIISPRQRSHSGS 933
Query: 404 PGPAPA 409
P+P+
Sbjct: 934 SSPSPS 939
Score = 48.1 bits (113), Expect = 2e-05
Identities = 99/385 (25%), Positives = 135/385 (35%), Gaps = 64/385 (16%)
Query: 79 PPDRSPTP-RSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGA-------------PGGQQ 124
P RS TP R R SP V+ + P R R P P G Q
Sbjct: 1714 PETRSRTPPRHRRSPSVS--SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQ 1771
Query: 125 LRKSRARLPRTRPGRE---------DAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG 175
+SR+R +TR R + R R+R + R G+ +R+ Q
Sbjct: 1772 RSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS 1831
Query: 176 AAPGRRLRGEPKTPP-------GRSGPSGGVRSG-----AGHRAATAEHQLGAGFSVRNG 223
RR RG +TPP R+ P+ RS A HR + + L + R+
Sbjct: 1832 RTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891
Query: 224 PGPPARLPP-APPGPPLRPARPH-NPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPP 281
P +R + R +R +P SR R T R+ P R R P
Sbjct: 1892 TSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 1951
Query: 282 PTVRPRLRVLTPPFTLLCALPERGSRTPST--RSAVLVDRVAGLGTELTLTPSSRRAHGS 339
P R R R TPP T R +P T RS V + +P +RR S
Sbjct: 1952 PVTRRRSRSRTPPVT---RRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS 2008
Query: 340 H--PLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRG 397
P++ R + T R S P LP +++ R P +R R
Sbjct: 2009 RTSPVTRRRSRSRTPPAIRR----RSRSRTPLLPRKRSRS---RSPLAIRR-----RSRS 2056
Query: 398 RTPSPGPGPAPALQPYSLTRFPASL 422
RTP G SLTR P ++
Sbjct: 2057 RTPRTARGKR------SLTRSPPAI 2075
Score = 37.7 bits (86), Expect = 0.021
Identities = 90/379 (23%), Positives = 128/379 (33%), Gaps = 56/379 (14%)
Query: 83 SPTPRSRVSPGVTGLAVGPGNPKRCQ-RSGVPYE-GPGAPGGQQLRKSRA--RLPRTRPG 138
S TP R+ G + P KR + RS P + G Q R+SR+ R R+R
Sbjct: 474 SHTPSRRM-----GRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSP 528
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPAR--------------AGQGQVQGAAPGRRLRG 184
+ RGR+R P PG R + R A +G+ + P RR R
Sbjct: 529 QR----RGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRS 584
Query: 185 EPKTPPGRSGPS-----------GGVRSGAGHRAATAEHQLGAGFSVR---NGPGPPARL 230
+TP R S R G A + VR P R
Sbjct: 585 RSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644
Query: 231 PPAPPGPPLR--PARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRL 288
+ P R +R P RG R T S + P R R P R R
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRS 704
Query: 289 RVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRR----AHGSHPLSS 344
R L P+R R+ S+ R + + +P ++ + S LSS
Sbjct: 705 RSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSS 764
Query: 345 ERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGP 404
R A +R L S S P P+ + Q PR R+ + + RTP
Sbjct: 765 PRSKAKSR-------LSLRRSLSGSSPCPKQKSQT--PPRRSRSGSSQPKAKSRTPPRRS 815
Query: 405 GPAPALQPYSLTRFPASLS 423
+ + P ++ P+ S
Sbjct: 816 RSSSSPPPKQKSKTPSRQS 834
Score = 35.0 bits (79), Expect = 0.14
Identities = 73/280 (26%), Positives = 97/280 (34%), Gaps = 26/280 (9%)
Query: 126 RKSRARL-PRTRP---GREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRR 181
R+SR+R P TR R R R+R P R + P + + R
Sbjct: 1992 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 2051
Query: 182 LRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRP 241
R +TP G RS R +A G+ PPA + P
Sbjct: 2052 RRSRSRTPRTARGKRSLTRSPPAIRRRSAS---GSSSDRSRSATPPATRNHSGSRTP--- 2105
Query: 242 ARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL 301
P + R+ PS P PL CRS +L P + R + VL +
Sbjct: 2106 -----PVALNSSRMSCFSRPSMS-PTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDG 2159
Query: 302 PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLP 361
P G R P + + + A L LT S P S AA A S P P
Sbjct: 2160 P--GPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSMS---AAGLAARMSQVPAP 2214
Query: 362 RPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPS 401
P + SL + A A R P AA+ L + RTP+
Sbjct: 2215 VP---LMSLRTAPAANLASRIPAASAAAMNLAS--ARTPA 2249
Score = 32.7 bits (73), Expect = 0.68
Identities = 69/301 (22%), Positives = 101/301 (33%), Gaps = 46/301 (15%)
Query: 141 DAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVR 200
DA R +R+ + S G P + G++PG R G PS
Sbjct: 1408 DAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLR--------DGSGTPSRHSL 1459
Query: 201 SGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEP 260
SG+ G S + P LP P RP + + P C
Sbjct: 1460 SGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTP--------RPRSRSPSSPELNNKCLT 1511
Query: 261 PSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPS-------TRS 313
P R+ + V P R R A P+ S + S TR+
Sbjct: 1512 PQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRT 1571
Query: 314 AVLVDRVAGLGTEL----TLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPS 369
+ +G E+ L+P R+ GS P ++ A RA +D P P +
Sbjct: 1572 PLRQRSRSGSSPEVDSKSRLSPRRSRS-GSSPEVKDKPRAAPRAQSGSDSSPEPKA---- 1626
Query: 370 LPSPQAQGQAVRQPRLLRAALALGAPRGRTPSP----GPGPAPALQPYSLTRFPASLSLP 425
P+P+A L R + + + +GR PSP +P P S T S S P
Sbjct: 1627 -PAPRA---------LPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSP 1676
Query: 426 D 426
+
Sbjct: 1677 E 1677
Score = 31.6 bits (70), Expect = 1.5
Identities = 77/352 (21%), Positives = 116/352 (32%), Gaps = 77/352 (21%)
Query: 94 VTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAE 153
+ G + P + +R + P+ PG Q R P T + + +++D E
Sbjct: 291 LAGRSPSPASGRRGE-GDAPFSEPGTTSTQ-----RPSSPETATKQPSSPYEDKDKDKKE 344
Query: 154 PGSLRPTSLGFPARAGQG-----------QVQGAAPG----RRLRGEPKTPPGRSGPSGG 198
+ RP+ P R+ G + G +P L EP PP + P+
Sbjct: 345 KSATRPSPS--PERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRD 402
Query: 199 VRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTC 258
R+ P P +LP + + +P S P ++
Sbjct: 403 ----------------------RSPPKSPEKLPQSS-------SSESSPPSPQPTKVSRH 433
Query: 259 EPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPER---GSRTPSTRSAV 315
S + P P P S ++ PT + R P R SR+P+T
Sbjct: 434 ASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPAT---- 489
Query: 316 LVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQA 375
A G + TP+ R S R + R S P R S SPQ
Sbjct: 490 -----AKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRS-----RSPQR 539
Query: 376 QGQAVRQPRLLRAALALGAPRGRTPSPGPGP-------APALQPYSLTRFPA 420
G + R R + A RGR+ S P PA + S +R PA
Sbjct: 540 PGWS-RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPA 590
Score = 29.6 bits (65), Expect = 5.8
Identities = 71/309 (22%), Positives = 104/309 (33%), Gaps = 49/309 (15%)
Query: 87 RSRVSPGVTGLAVGPGNPK-RCQRSGVPYEGPGAPGGQQLRKSR----ARLPRTRPGRED 141
+SR++ +T +++G P +G+ P L R A L P
Sbjct: 2178 QSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASA 2237
Query: 142 AAVR-GRNRDPAEPGSLRPTSLGFPARAGQGQVQG----AAPGRRLRGEPKTPPGRSGPS 196
AA+ R PA P ++ PA A + AP +P+TP +
Sbjct: 2238 AAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPTAPAVNL 2297
Query: 197 GGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLL 256
G R+ A A A G+G PP P P P S
Sbjct: 2298 AGARTPA---ALAALSLTGSG------------TPPTAANYPSSSRTPQAPASAN----- 2337
Query: 257 TCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVL 316
P S P+ + SR A P R + P + G+ S R +
Sbjct: 2338 LVGPRSAHATAPVNIAGSRTAAALAPASLTSAR-MAPALS--------GANLTSPRVPLS 2388
Query: 317 V-DRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQA 375
+RV+G T P RA P S AP+++ +++ P P S + PS
Sbjct: 2389 AYERVSGR----TSPPLLDRARSRTPPS-----APSQSRMTSERAPSPSSRMGQAPSQSL 2439
Query: 376 QGQAVRQPR 384
A QPR
Sbjct: 2440 LPPAQDQPR 2448
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 62.8 bits (151), Expect = 6e-10
Identities = 105/372 (28%), Positives = 135/372 (36%), Gaps = 85/372 (22%)
Query: 80 PDRSPTPRSRVSPG---VTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR 136
P SP P V+P V G A G +R+G GG + +S R TR
Sbjct: 29 PPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAG-------GIGGATIPESAPRAGPTR 81
Query: 137 PGREDAAVRGRNRDPAE---PGSL----RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP 189
R A+ RG PA+ PG + R + P GQ ++ +A RG+
Sbjct: 82 TSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEA 141
Query: 190 PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTS 249
P RS S G R R+ GP P P P + AR S
Sbjct: 142 PKRSALSAGAR--------------------RDTSGP----TPGTPSPAM--AR----RS 171
Query: 250 RGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTP 309
R G + LP P P R R PPT PR V S
Sbjct: 172 RAAGTEV-------GLPRPAPSARPR-----PPTEGPRKSV------------SSASEHS 207
Query: 310 STRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPS 369
+T + R G L S + + PLSS P R+ SA PR P+ PS
Sbjct: 208 TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS-----PARSGPSARGTPRAPAH-PS 261
Query: 370 LPSPQAQGQAVRQPRLL----RAALALGAPRG---RTPSPGPGPAPALQPYSLTRFPASL 422
P P+ QA+R P++ AA ALG TPSP P+P+ P T
Sbjct: 262 QPKPKGL-QALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPA 320
Query: 423 SLPDLVFTSVGS 434
+ P TS+GS
Sbjct: 321 TPPSQATTSLGS 332
Score = 57.0 bits (136), Expect = 3e-08
Identities = 94/376 (25%), Positives = 124/376 (32%), Gaps = 78/376 (20%)
Query: 78 LPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRP 137
L P +P P++ + + L P P S + P AP + +A
Sbjct: 347 LSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPS 406
Query: 138 GREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG 197
A P P + P+ A QV + P TPP ++ P
Sbjct: 407 PPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP- 465
Query: 198 GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLR-----PAR-----PHNP 247
A QL PP + PPA PPL+ PA P +P
Sbjct: 466 ---------LAAPPLQLAK---------PPPQAPPALATPPLQALPSPPASFPGQAPFSP 507
Query: 248 TSRGPGRLLTCEPPSR---------KLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLL 298
++ P L PP ++PP P + PPT P V P TL
Sbjct: 508 SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLA 567
Query: 299 CAL--PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGS----------------- 339
A P SR+PS S + +AG + T TP R + S
Sbjct: 568 LAPGPPPPPSRSPS--STLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELA 625
Query: 340 --HPLSSERQAAPTRAFCSAD--PLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAP 395
HP + R AP AF A PLP PP+ P A G L P
Sbjct: 626 ACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPG----SADG--------LCTIYETEGP 673
Query: 396 RGRTPSPG---PGPAP 408
TP+PG PGP+P
Sbjct: 674 ESATPAPGALDPGPSP 689
Score = 46.6 bits (109), Expect = 5e-05
Identities = 94/399 (23%), Positives = 116/399 (29%), Gaps = 96/399 (24%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGP--------------------- 117
P +P+P G VG P R P EGP
Sbjct: 158 PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARR 217
Query: 118 --GAPGGQQLRKSRA----RLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGF------- 164
A GG Q SR+ P + P R + RG R PA P +P L
Sbjct: 218 RPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVT 277
Query: 165 PARAGQGQVQG-------AAPGRRLRGEPKTPPGR-------SGPSGGVRSGAGHRAATA 210
P R G A P P PP + P + G A
Sbjct: 278 PPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA 337
Query: 211 EHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
H + PP + PPA PPL+ A P P S L T PS + P L
Sbjct: 338 THSFLPSPPLSPLATPPPQAPPALALPPLQ-APPSPPASPPLSPLAT---PSPQAPNALA 393
Query: 271 LCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLT 330
+ + +PPP+ PP + P +PS T
Sbjct: 394 VHLLQAPFSPPPS---------PPVQAPFSPPASPPVSPSA------------------T 426
Query: 331 PSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVP----SLPSPQAQGQAVRQPRLL 386
P S QA P+ A P PP+ P + P PQA P L
Sbjct: 427 PPS-------------QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQL 473
Query: 387 RAALALGAPRGRTPSPGPGPAPALQPYSLTRFPASLSLP 425
P TP P+P F S SLP
Sbjct: 474 AKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLP 512
Score = 37.0 bits (84), Expect = 0.036
Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 15/170 (8%)
Query: 242 ARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL 301
A P +R PG LLT PP PPP + VL V + +
Sbjct: 12 AAARTPAARAPG-LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 302 PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLP 361
PE R TR++ R G P+ + G P+SS +A+ T PL
Sbjct: 71 PESAPRAGPTRTS----RPPASGRGERAPPAKNTSPG--PVSSPGRASGT---TRPGPLG 121
Query: 362 RPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG-PAPAL 410
+ + S A+G+A P+ R+AL+ GA R T P PG P+PA+
Sbjct: 122 QKGLRI-SAEETVARGKATEAPK--RSALSAGARRD-TSGPTPGTPSPAM 167
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 62.0 bits (149), Expect = 1e-09
Identities = 102/417 (24%), Positives = 137/417 (32%), Gaps = 101/417 (24%)
Query: 113 PYEGPGAP--GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQ 170
P GPG P GGQ R R R R G ++ +R A+ + SLG + GQ
Sbjct: 272 PGPGPGTPRRGGQSSRGGRGGRGRGRGGGLPFVIKFVSR--AKKVKMGQLSLGLESGQGQ 329
Query: 171 GQVQGA---APGRRL-RGEPKTP--------------PGRSGPSGGVRSGAGHRAATAEH 212
GQ + + P RR+ G+ +P + A AE
Sbjct: 330 GQHEESWQDVPQRRVGSGQGGSPCWKKQEQKLDDEEEEKKEEEEKDKEGEEKEERAVAEE 389
Query: 213 QLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLC 272
+ A PP PPAP PP P P S P L PP PPPLP
Sbjct: 390 MMPAAEKEEAKLPPPPLTPPAPSPPPPLP-----PPSTSPPPPLCPPPPPPVSPPPLP-- 442
Query: 273 RSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTL--T 330
+PPP + +PP + + R P T S A G E T T
Sbjct: 443 ------SPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGTSPPT 496
Query: 331 PSSRRAHGSHPLSSERQAAPTRAFC----------------------------------- 355
P+ A G P S A + F
Sbjct: 497 PTPSTATGGPPEDSPTVAPKSTTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPK 556
Query: 356 ------------SADPLPRPPSFVPS-----------LPSPQAQGQAVRQPRLLRAALAL 392
++ P+P+ P+ VPS +P P+ + +R+P +L
Sbjct: 557 VEVSPVLRPPITTSPPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTR 616
Query: 393 GAPRGR-TPSPGPGPAPALQPYSLTRFPASLSLPDLVFTSVGSSLVI---CLVPTPL 445
P P P P P+P P + +R P L P FT + L I L P PL
Sbjct: 617 ELPPPPPAPPPPPAPSPPPAPATSSRRPLLLRAPQ--FTPSEAHLKIYESVLTPPPL 671
Score = 36.6 bits (83), Expect = 0.047
Identities = 59/225 (26%), Positives = 75/225 (33%), Gaps = 36/225 (16%)
Query: 226 PPARLPPAP-PGPPLRPARPHNPTSRGPGRLLTCEPPS-------RKLPPPLPLCRSRWV 277
PP PAP P PP P P P R P+ R+LPPP P
Sbjct: 571 PPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPA 630
Query: 278 LAPPP----TVRPRLRVLTPPFT-----------LLCALPERGSRTPSTRSAVLVDRVAG 322
+PPP + R L + P FT +L P P D A
Sbjct: 631 PSPPPAPATSSRRPLLLRAPQFTPSEAHLKIYESVLTPPPLGAPEAPEPEPPPADDSPA- 689
Query: 323 LGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPS-PQAQGQAVR 381
E R H S P + P +A S P P+L + PQ Q Q ++
Sbjct: 690 ---EPEPRAVGRTNHLSLPRFAPVVTTPVKAEVS-------PHGAPALSNGPQTQAQLLQ 739
Query: 382 QPRLLRAALALGAPRGRTPSPGPGPAP-ALQPYSLTRFPASLSLP 425
+ L+ L A P P P+P + P R SLP
Sbjct: 740 PLQALQTQLLPQALPPPQPQLQPPPSPQQMPPLEKARIAGVGSLP 784
Score = 35.0 bits (79), Expect = 0.14
Identities = 54/190 (28%), Positives = 64/190 (33%), Gaps = 48/190 (25%)
Query: 224 PGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPT 283
P PPA PP P PP PA +SR P LL P L + S VL PPP
Sbjct: 620 PPPPAPPPPPAPSPPPAPA----TSSRRP--LLLRAPQFTPSEAHLKIYES--VLTPPPL 671
Query: 284 VRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLS 343
P PP P S AV R H S P
Sbjct: 672 GAPEAPEPEPP-------PADDSPAEPEPRAV-----------------GRTNHLSLPRF 707
Query: 344 SERQAAPTRAFCSADPLPRPPSFVPSLPS-PQAQGQAVRQPRLLRAALALGAPRGRTPSP 402
+ P +A S P P+L + PQ Q Q ++ + L+ L P
Sbjct: 708 APVVTTPVKAEVS-------PHGAPALSNGPQTQAQLLQPLQALQTQL--------LPQA 752
Query: 403 GPGPAPALQP 412
P P P LQP
Sbjct: 753 LPPPQPQLQP 762
Score = 34.3 bits (77), Expect = 0.23
Identities = 57/218 (26%), Positives = 71/218 (32%), Gaps = 44/218 (20%)
Query: 198 GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRP--ARPHNPTSRGPGRL 255
G R H A E+Q ++ + P P + PP PPL P P P +
Sbjct: 1787 GPREEPAHLEAAEENQ-----TIVHSPAPSSE-PPGGEDPPLDTDVLVPGAPERHSPIQN 1840
Query: 256 LT--CEPPSRKLPPPLPLCRSRWVLAPP---PTVRPRLRVLTPPFTLLCALPERGSRTPS 310
L P S PPP P S + P P+ RP V P LP GS
Sbjct: 1841 LDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRRPLGGVSFGP------LPSPGS---- 1890
Query: 311 TRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSL 370
PSS H + A P R+ + PRPP +
Sbjct: 1891 --------------------PSSLTHHIPTVGDPDFPAPPRRSRRPSPLAPRPPPSRWAS 1930
Query: 371 PSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAP 408
P P +R P AL G PGP P+P
Sbjct: 1931 P-PLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAPSP 1967
Score = 30.4 bits (67), Expect = 3.4
Identities = 74/299 (24%), Positives = 95/299 (31%), Gaps = 89/299 (29%)
Query: 183 RGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLG--AGFSVRNGPGP--------PARLPP 232
RG+ P G GV AG RA E F ++N GP LPP
Sbjct: 2079 RGQGTPPSGPGVVRAGVLGAAGDRARPPEDLPSEIVDFVLKNLGGPGDGGAGPREESLPP 2138
Query: 233 APP---------GPPLRPARPHNPTSRGPG----RLLTC----EPP-------------- 261
APP G PA P + PG R+L+ EPP
Sbjct: 2139 APPLANGSQPSQGLTASPADPTRTFAWLPGAPGVRVLSLGPAPEPPKPATSKIILVNKLG 2198
Query: 262 ---------SRKLPPPL----------PLCRSRWVLAPPP---------TVRPRLRVLTP 293
+PPP+ P + W L P P VRP P
Sbjct: 2199 QVFVKMAGEGEPVPPPVKQPPLPPTISPTAPTSWTLPPGPLLGVLPVVGVVRPAPPPPPP 2258
Query: 294 PFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRA 353
P TL+ + G +P R A+ V RV+ T S R P + R A
Sbjct: 2259 PLTLVLS---SGPASP-PRQAIRVKRVS--------TFSGRSPPAPPPYKAPRLDEDGEA 2306
Query: 354 FCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQP 412
++ P+ VP L S ++ P +R L L P PGP P
Sbjct: 2307 ---SEDTPQ----VPGLGSGGFSRVRMKTP-TVRGVLDLDRPGEPAGEESPGPLQERSP 2357
Score = 29.3 bits (64), Expect = 7.5
Identities = 46/176 (26%), Positives = 60/176 (34%), Gaps = 32/176 (18%)
Query: 96 GLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPG 155
G GPG+ R + G P G G GG+ R + A R R A +P E
Sbjct: 8 GSCPGPGSA-RGRFPGRP-RGAGGGGGRGGRGNGAERVRVALRRGGGATGPGGAEPGEDT 65
Query: 156 SL-----------RPTSLGFPARA----GQGQVQGAAPGRRLRGEPKTPPGRSGPS---- 196
+L R L R G+G+ +G P R E ++ G S
Sbjct: 66 ALLRLLGLRRGLRRLRRLWAGPRVQRGRGRGRGRGWGPSRGCVPEEESSDGESDEEEFQG 125
Query: 197 ---------GGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPAR 243
+RS + A G G + P PP RL P PP PAR
Sbjct: 126 FHSDEDVAPSSLRSALRSQRGRAPR--GRGRKHKTTPLPPPRLADVAPTPPKTPAR 179
Score = 29.3 bits (64), Expect = 7.5
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 125 LRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRG 184
L ++RA +P P +R R E S + P+R+ +G+V+ A PG G
Sbjct: 879 LGQARAMVPEDVPRLSALPLRDRQDLATEDTSSASETESVPSRSRRGKVEAAGPG----G 934
Query: 185 EPKTPPGRSGPSGGVRSGAGHRAATAEH 212
E + P G SGG + R+ + H
Sbjct: 935 ESE-PTG----SGGTLAHTPRRSLPSHH 957
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 61.2 bits (147), Expect = 2e-09
Identities = 107/394 (27%), Positives = 136/394 (34%), Gaps = 104/394 (26%)
Query: 76 GALPPDRS------PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSR 129
G+ PP+R P P +P T A PG+ R + P GP PG + S
Sbjct: 296 GSAPPERQEQRHSLPHPYPYPAPAYT--AHPPGH--RLVPAAPPGPGPRPPGAE----SH 347
Query: 130 ARLPRTRPG----REDAAVRGR------------------NRDPAEPGSLRPTSLGFPAR 167
LP TRP RE R R +R P PG+ +S +
Sbjct: 348 GCLPATRPPGSDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSN 407
Query: 168 AGQGQVQGAAPGRRLRGEP--KTPP------GRSGPSG--GVRSGAGHRAATAEHQLGAG 217
G ++G P + G +TP GR GPS + G AAT L G
Sbjct: 408 TG---LRGVEPNPGIPGADHYQTPALEVSHHGRLGPSAHSSRKPFLGAPAATPHLSLPPG 464
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLT-----CEPPSRKLPPPLPLC 272
S + P PP PP PP P +R G +L E P R PPPLP
Sbjct: 465 PS--SPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAPPPLP-- 520
Query: 273 RSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPS 332
L PP + R V T + S TP T + S
Sbjct: 521 HREGFLGPPAS---RFSVGT-----------QDSHTPPTPPTPTTSS----------SNS 556
Query: 333 SRRAHGSHPLSSERQAAPTRAFCSADPLPRPPS----------------FVPSLPSP--Q 374
+ +H S P P S DPLPRPPS P+ PS Q
Sbjct: 557 NSGSHSSSPAGPVSFPPPPYLARSIDPLPRPPSPAQNPQDPPLVPLTLALPPAPPSSCHQ 616
Query: 375 AQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAP 408
+ R+P R ++ +TP GPGP P
Sbjct: 617 NTSGSFRRPESPRPRVSF----PKTPEVGPGPPP 646
Score = 42.7 bits (99), Expect = 7e-04
Identities = 88/330 (26%), Positives = 113/330 (34%), Gaps = 50/330 (15%)
Query: 106 RCQRSGVPYEGPGAPGGQQL-RKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGF 164
RC S + Y G A G ++ R +A+L G R + P E L
Sbjct: 128 RCYHSALRYGGSFAELGPRIGRLQQAQLWNFHTG--SCQHRAKVLPPLEQVW---NLLHL 182
Query: 165 PARAGQGQVQGAAPGRRLRG----EPKTPPGRSGPSG--GVRSGAGHRAATAEHQLGAGF 218
+ G +G P +R +P P SGPSG G+ G R Q G
Sbjct: 183 EHKRNYGAKRGGPPVKRAAEPPVVQPVPPAALSGPSGEEGLSPGGKRRRGCNSEQTGLPP 242
Query: 219 SVRNGPGPPARLPPAPPGPP--------LRPARPHNPTSRGPGRLLTCEP--PSRKLPPP 268
+ P PP LPP PP PP L + P T G L + P RK P
Sbjct: 243 GL---PLPPPPLPPPPPPPPPPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPERKGSAP 299
Query: 269 LPLCRSRWVLAPP-PTVRPRLRVLTPPFTLL-CALPERGSRTPSTRSAVLVDRVAGLGTE 326
R L P P P P L+ A P G R P S + G++
Sbjct: 300 PERQEQRHSLPHPYPYPAPAYTAHPPGHRLVPAAPPGPGPRPPGAESHGCLPATRPPGSD 359
Query: 327 LTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLL 386
L R S SS AA T +P PS P LP +
Sbjct: 360 L----RESRVQRSRMDSSVSPAATTAC------VPYAPSRPPGLPGTTTSSSS------- 402
Query: 387 RAALALGAPRGRTPSPG-PG----PAPALQ 411
++ + RG P+PG PG PAL+
Sbjct: 403 -SSSSNTGLRGVEPNPGIPGADHYQTPALE 431
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 60.1 bits (144), Expect = 4e-09
Identities = 66/219 (30%), Positives = 84/219 (38%), Gaps = 32/219 (14%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP R P + G P P G P EGP GG Q ++ P RPG
Sbjct: 92 PPPRPGKPEGQPPQGGNQSQGPPPRP------GKP-EGPPPQGGNQ-----SQGPPPRPG 139
Query: 139 R-EDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG 197
+ E +G N+ P RP P G Q QG P G+P+ PP P G
Sbjct: 140 KPEGPPPQGGNQSQGPPP--RPGKPEGPPPQGGNQSQGPPPHP---GKPEGPP----PQG 190
Query: 198 GVRS-GAGHRAATAEHQLGAGFSVRNGP--------GPPARLPPAPPGPPLRPARPHNPT 248
G +S G R E G + GP GPP++ P GPP P +P P
Sbjct: 191 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPP 250
Query: 249 SRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPR 287
+ + PP R PP P + L PPP +P+
Sbjct: 251 PQEGNKPQRPPPPGRPQGPPPPGGNPQQPL-PPPAGKPQ 288
Score = 48.9 bits (115), Expect = 9e-06
Identities = 52/198 (26%), Positives = 69/198 (34%), Gaps = 26/198 (13%)
Query: 100 GPGNPKRCQRSGVPYEGPGAPGGQQLRK----SRARLPRTRPGREDAAVRGRNRDPAEPG 155
G +R Q P P PG + R ++++ P RPG+ + P + G
Sbjct: 34 GKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGP-------PPQGG 86
Query: 156 SLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGP---SGGVRSGAGHRAATAEH 212
+ S G P R G+ + Q G + +G P P GP G G R E
Sbjct: 87 N---QSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEG 143
Query: 213 QLGAGFSVRNGPGPPARLPPAPP--------GPPLRPARPHNPTSRGPGRLLTCEPPSRK 264
G + GP P P PP GPP P +P P +G G PP
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQG-GNQSQGPPPRPG 202
Query: 265 LPPPLPLCRSRWVLAPPP 282
P P PPP
Sbjct: 203 KPEGPPPQGGNQSQGPPP 220
Score = 48.9 bits (115), Expect = 9e-06
Identities = 61/198 (30%), Positives = 71/198 (35%), Gaps = 29/198 (14%)
Query: 84 PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGR-EDA 142
P P P G G P R G P EGP GG Q ++ P RPG+ E
Sbjct: 115 PRPGKPEGPPPQGGNQSQGPPPR---PGKP-EGPPPQGGNQ-----SQGPPPRPGKPEGP 165
Query: 143 AVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRS- 201
+G N+ P P P G Q QG P G+P+ PP P GG +S
Sbjct: 166 PPQGGNQSQGPPP--HPGKPEGPPPQGGNQSQGPPPRP---GKPEGPP----PQGGNQSQ 216
Query: 202 GAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGP-------PLRPARPHNPTSRGPGR 254
G R E G + GP P P PP P P RP P G
Sbjct: 217 GPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNP 276
Query: 255 LLTCEPPSRKL--PPPLP 270
PP+ K PPP P
Sbjct: 277 QQPLPPPAGKPQGPPPPP 294
Score = 42.7 bits (99), Expect = 7e-04
Identities = 52/181 (28%), Positives = 64/181 (35%), Gaps = 35/181 (19%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP R P G P +P G P EGP GG Q ++ P RPG
Sbjct: 155 PPPRPGKPEGPPPQGGNQSQGPPPHP------GKP-EGPPPQGGNQ-----SQGPPPRPG 202
Query: 139 R-EDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSG--- 194
+ E +G N+ P RP P G + QG P G+P+ PP + G
Sbjct: 203 KPEGPPPQGGNQSQGPPP--RPGKPEGPPSQGGNKPQGPPPHP---GKPQGPPPQEGNKP 257
Query: 195 ---PSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG 251
P G G + L PPA P PP PP + RPH P
Sbjct: 258 QRPPPPGRPQGPPPPGGNPQQPLP----------PPAGKPQGPPPPP-QGGRPHRPPQGQ 306
Query: 252 P 252
P
Sbjct: 307 P 307
Score = 33.1 bits (74), Expect = 0.52
Identities = 64/251 (25%), Positives = 79/251 (31%), Gaps = 54/251 (21%)
Query: 173 VQGAAPGRRLRG---EPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPAR 229
+ G GRR +G +TPP P G G GP P
Sbjct: 32 ISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQS---------------QGPPPRPG 76
Query: 230 LPPAPP--------GPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPP 281
P PP GPP RP +P +G G PP P P PP
Sbjct: 77 KPEGPPPQGGNQSQGPPPRPGKPEGQPPQG-GNQSQGPPPRPGKPEGPPPQGGNQSQGPP 135
Query: 282 PTVRPRLRVLTPPFTLLCALPERG--SRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGS 339
P RP + PP P+ G S+ P R E ++ G
Sbjct: 136 P--RPG-KPEGPP-------PQGGNQSQGPPPRPG---------KPEGPPPQGGNQSQGP 176
Query: 340 HPLSSERQAAPTR-AFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAP-RG 397
P + + P + S P PRP P P PQ Q+ P R G P +G
Sbjct: 177 PPHPGKPEGPPPQGGNQSQGPPPRPGK--PEGPPPQGGNQSQGPPP--RPGKPEGPPSQG 232
Query: 398 RTPSPGPGPAP 408
GP P P
Sbjct: 233 GNKPQGPPPHP 243
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 59.3 bits (142), Expect = 7e-09
Identities = 86/289 (29%), Positives = 107/289 (37%), Gaps = 47/289 (16%)
Query: 166 ARAGQGQVQGAAP---GRRLRGEPKTPPG------RSGPSGGVRSGAGHRAAT--AEHQL 214
ARAG V+ AA G +L G PG R+ P + A A A L
Sbjct: 595 ARAGGPAVREAAYKRFGYKLAGMDPEKPGTPIVLRRAQPRARSSNDARRPPAPQPAPRTL 654
Query: 215 GAGFSVRNGPGPPARLPPA---PPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLP---PP 268
++ + P PP PP+ PP PPL PA P P L PP P PP
Sbjct: 655 SHWSALLSPPVPPR--PPSSGPPPAPPLSPALSGLPRPASPYGSLRRHPPPWAAPAHVPP 712
Query: 269 LPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELT 328
P S W PP V P + PP L P R R A A
Sbjct: 713 APQA-SWWAFVEPPAVSPEV----PPDLLAFPGPRPSFRGSRRRGAAFGFPGA------- 760
Query: 329 LTPSSRRAHGSHPLSSER---QAAPTRAFCSADPLPRP-------PSFVPSLPSPQAQGQ 378
+P + R PL+S + +++P +CS P P P P LP +
Sbjct: 761 -SPRASRRRAWSPLASPQPSLRSSPGLGYCSPLAPPSPQLSLRTGPFQPPFLPPARRPRS 819
Query: 379 AVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFP--ASLSLP 425
P RAA LG P +P PG P P P L P +SL+LP
Sbjct: 820 LQESPAPRRAAGRLGPP--GSPLPG-SPRPPSPPLGLCHSPRRSSLNLP 865
Score = 44.3 bits (103), Expect = 2e-04
Identities = 92/365 (25%), Positives = 121/365 (33%), Gaps = 61/365 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPG--APGGQQLRKSRARLPRTR 136
PP P P +SP ++GL +R P+ P P Q + P
Sbjct: 669 PPSSGPPPAPPLSPALSGLPRPASPYGSLRRHPPPWAAPAHVPPAPQASWWAFVEPPAVS 728
Query: 137 PGREDAAVRGRNRDPAEPGS-LRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGP 195
P + P+ GS R + GFP GA+P R R +P P
Sbjct: 729 PEVPPDLLAFPGPRPSFRGSRRRGAAFGFP---------GASP-RASRRRAWSPLASPQP 778
Query: 196 SGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA--------------------PP 235
S G G+ + A S+R GP P LPPA PP
Sbjct: 779 SLRSSPGLGYCSPLAPP--SPQLSLRTGPFQPPFLPPARRPRSLQESPAPRRAAGRLGPP 836
Query: 236 GPPLRPARPHNPTSRGPGRLLTCEPPSR---KLPPPLPLCRSRWVLAPPPT--VRPRLRV 290
G PL P P P+ L C P R LP LP R L+ PPT V+P++R+
Sbjct: 837 GSPL-PGSPRPPSP----PLGLCHSPRRSSLNLPSRLPHTWRR--LSEPPTRAVKPQVRL 889
Query: 291 --LTPPFTLLCALP---ERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSE 345
PP P R P ++ + P+ R P
Sbjct: 890 PFHRPPRAGAWRAPLEHRESPREPEDSETPWTVPPLAPSWDVDMPPTQR-----PPSPWP 944
Query: 346 RQAAPTRAFCSADPLPRPP--SFVPSLPSP--QAQGQAVRQPRLLRAALALGAPRGRTPS 401
A R F P+P P + +PSP Q + A R+ P T S
Sbjct: 945 GGAGSRRGFSRPPPVPENPFLQLLGPVPSPTLQPEDPAADMTRVFLGRHHEPGPGQLTKS 1004
Query: 402 PGPGP 406
GP P
Sbjct: 1005 AGPTP 1009
Score = 38.5 bits (88), Expect = 0.012
Identities = 83/340 (24%), Positives = 110/340 (32%), Gaps = 46/340 (13%)
Query: 108 QRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPAR 167
+R G + PGA R++ + L +P + G L P S R
Sbjct: 749 RRRGAAFGFPGASPRASRRRAWSPLASPQPSLRSSPGLGYC------SPLAPPSPQLSLR 802
Query: 168 AGQGQVQGAAPGRRLRG-----EPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRN 222
G Q P RR R P+ GR GP G G+ + LG S R
Sbjct: 803 TGPFQPPFLPPARRPRSLQESPAPRRAAGRLGPPGSPLPGSPRPPSPP---LGLCHSPRR 859
Query: 223 GP-GPPARLPPA---PPGPPLRPARP------HNPTSRGPGRL------LTCEPPSRKLP 266
P+RLP PP R +P H P G R EP + P
Sbjct: 860 SSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPLEHRESPREPEDSETP 919
Query: 267 PPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTE 326
+P W + PPT RP P+ SR P + ++ G
Sbjct: 920 WTVPPLAPSWDVDMPPTQRP-----PSPWPGGAGSRRGFSRPPPVPENPFL-QLLGPVPS 973
Query: 327 LTLTPSSRRAHGSHP-LSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRL 385
TL P A + L + P + SA P P P +L PQ + + P
Sbjct: 974 PTLQPEDPAADMTRVFLGRHHEPGPGQLTKSAGPTPEKPEEEATLGDPQLPAE-TKPP-- 1030
Query: 386 LRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPASLSLP 425
P+ TP P + P T P SLS P
Sbjct: 1031 -----TPAPPKDVTPPKDITPPKDVLPEQKTLRP-SLSYP 1064
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 59.3 bits (142), Expect = 7e-09
Identities = 68/205 (33%), Positives = 74/205 (36%), Gaps = 33/205 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLA--VGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR 136
PP R+ P S PG GL V P P VP GP P G R
Sbjct: 765 PPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVP--GPQGPPGPPGRDGT------- 815
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTS-LGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRS 193
PGR+ G DP E G T GFP G +G PG RG PPG
Sbjct: 816 PGRD-----GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERG----PPGPQ 866
Query: 194 GPSGGVRSGAGHRAATAEHQLGAGFS--------VRNGPGPPARLPPAPPGPPLRPARPH 245
GP G H T G+GF R PGPP PP PG P P R
Sbjct: 867 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPG--PPGVPGLPGEPGRFG 924
Query: 246 NPTSRGPGRLLTCEPPSRKLPPPLP 270
+S PG P R+ PP P
Sbjct: 925 VNSSDVPGPAGLPGVPGREGPPGFP 949
Score = 52.0 bits (123), Expect = 1e-06
Identities = 68/235 (28%), Positives = 80/235 (34%), Gaps = 52/235 (22%)
Query: 52 RGRNGENADTARLFGTTVYTFEVLGALPPDRSPTP-------RSRVSPGVTGLAVGPGNP 104
+G GE D + FG PP TP PG GL PGN
Sbjct: 1235 KGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGL---PGNQ 1291
Query: 105 KRCQRSGVPYE-GPGAPGGQ---QLRKSRARLPRTRPGREDAAVRGRNRDPAEPG---SL 157
G E GP P GQ + A + + R DA +G +P G S
Sbjct: 1292 GPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 1351
Query: 158 RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAG 217
P G P G + G G +RG+P PPG GP G G
Sbjct: 1352 LPGPPGPPGPRGYPGIPGPK-GESIRGQPG-PPGPQGPPG------------------IG 1391
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPA--RPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
+ R GP P PPGPP P+ PH T PG PP PP P
Sbjct: 1392 YEGRQGP-------PGPPGPPGPPSFPGPHRQTISVPG------PPGPPGPPGPP 1433
Score = 51.2 bits (121), Expect = 2e-06
Identities = 60/216 (27%), Positives = 67/216 (31%), Gaps = 40/216 (18%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRA-----------------RLP 133
+PG G G+P +R +GP P G R + R P
Sbjct: 842 TPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGP 901
Query: 134 RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPG 191
R PG G P EPG S P AG V G PG P PPG
Sbjct: 902 RGFPGPPGPP--GVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 959
Query: 192 RSGPSG-----------------GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP 234
R GP G G + G A E L PGPP PP P
Sbjct: 960 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPG--PPGP 1017
Query: 235 PGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
PGP L S GP + PP LP
Sbjct: 1018 PGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLP 1053
Score = 43.9 bits (102), Expect = 3e-04
Identities = 77/266 (28%), Positives = 93/266 (34%), Gaps = 54/266 (20%)
Query: 84 PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR-----PG 138
P P R PG G PG P R +G+ E G PG L +P PG
Sbjct: 1208 PGPYGR--PGYKGEIGFPGRPGRPGMNGLKGE-KGEPGDASLGFGMRGMPGPPGPPGPPG 1264
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGE--PKTPPGR---- 192
V N S RP G P G +GA +GE P PPG+
Sbjct: 1265 PPGTPVYDSN---VFAESSRPGPPGLPGNQGPPGPKGA------KGEVGPPGPPGQFPFD 1315
Query: 193 --------SGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPA-- 242
G G R AG + E G GF + PGPP PP P G P P
Sbjct: 1316 FLQLEAEMKGEKGD-RGDAGQKGERGEPG-GGGFFGSSLPGPPG--PPGPRGYPGIPGPK 1371
Query: 243 ------RPHNPTSRGP------GRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRV 290
+P P +GP GR PP PP P + + P P P
Sbjct: 1372 GESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP--GP 1429
Query: 291 LTPPFTLLCALPERGSRTPSTRSAVL 316
PP T+ + G R +TR A+L
Sbjct: 1430 PGPPGTMGAS---SGVRLWATRQAML 1452
Score = 40.4 bits (93), Expect = 0.003
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 27/168 (16%)
Query: 93 GVTGLAVGPGNPKRC----QRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRN 148
G GL PG P ++ G PG G R A P + + +G
Sbjct: 1113 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG----RPGFAGFPGPAGPKGNLGSKGER 1168
Query: 149 RDPAEPGSL-RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG---------- 197
P G P S+ P G Q A G P P GR G G
Sbjct: 1169 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 1228
Query: 198 -GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARP 244
G+ G + + LG F +R PGPP PPGPP P P
Sbjct: 1229 PGMNGLKGEKGEPGDASLG--FGMRGMPGPPG-----PPGPPGPPGTP 1269
Score = 34.3 bits (77), Expect = 0.23
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 154 PGSLRPTSLGFPARAGQGQV-QGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAGHRAATA 210
PGS ++ R G+V +G G++ GEP P PGR+GP G
Sbjct: 729 PGSDSVSTWDGSVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSP-------CLPG 779
Query: 211 EHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG-PG 253
L S GP + P P GPP P R P G PG
Sbjct: 780 PPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPG 823
Score = 34.3 bits (77), Expect = 0.23
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG---------------AAPGRR 181
PG + ++RG+ P PG P +G+ R G G + PG
Sbjct: 1368 PGPKGESIRGQ---PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPP 1424
Query: 182 LRGEPKTPPGRSGPSGGVRSGAGHRAATAE-HQLGAGFSV 220
P PPG G S GVR A +A + H++ G+ +
Sbjct: 1425 GPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLI 1464
Score = 32.3 bits (72), Expect = 0.89
Identities = 51/176 (28%), Positives = 57/176 (32%), Gaps = 48/176 (27%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVP-----YEGPGAPGGQQLRKSRARLPRTRPGREDAAVR 145
+PG G GP P G+P EG G P R + P+ PG +
Sbjct: 1002 APGPAG-PPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG--PQGPPG-----LP 1053
Query: 146 GRNRDPAEPGSLR----------PTSLGFPARAGQGQVQGAAPGRRLRGEPKTP------ 189
G DP PG P G P R G QG R RGE P
Sbjct: 1054 GLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVG 1113
Query: 190 ----PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLP----PAPPGP 237
PG GP G V Q G+ SV PGP R P P GP
Sbjct: 1114 QPGLPGPPGPPGPV--------VYVSEQDGSVLSV---PGPEGRPGFAGFPGPAGP 1158
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 157 LRPTSLGFPARAGQG---QVQGAAPGRRLRGEPKTPP---------GRSGPSGGVRSGAG 204
L P + F A+AG + QG ++R +P+ P G SG SG G
Sbjct: 612 LEPGAGLFVAQAGGADPDKFQGVIAELKVRRDPQVSPMHCLDEEGDDSDGASGDSGSGLG 671
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPAR 243
+ GA R PP PP G +R
Sbjct: 672 DARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSR 710
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 59.3 bits (142), Expect = 7e-09
Identities = 68/205 (33%), Positives = 74/205 (36%), Gaps = 33/205 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLA--VGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR 136
PP R+ P S PG GL V P P VP GP P G R
Sbjct: 350 PPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVP--GPQGPPGPPGRDGT------- 400
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTS-LGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRS 193
PGR+ G DP E G T GFP G +G PG RG PPG
Sbjct: 401 PGRD-----GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERG----PPGPQ 451
Query: 194 GPSGGVRSGAGHRAATAEHQLGAGFS--------VRNGPGPPARLPPAPPGPPLRPARPH 245
GP G H T G+GF R PGPP PP PG P P R
Sbjct: 452 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPG--PPGVPGLPGEPGRFG 509
Query: 246 NPTSRGPGRLLTCEPPSRKLPPPLP 270
+S PG P R+ PP P
Sbjct: 510 VNSSDVPGPAGLPGVPGREGPPGFP 534
Score = 52.0 bits (123), Expect = 1e-06
Identities = 68/235 (28%), Positives = 80/235 (34%), Gaps = 52/235 (22%)
Query: 52 RGRNGENADTARLFGTTVYTFEVLGALPPDRSPTP-------RSRVSPGVTGLAVGPGNP 104
+G GE D + FG PP TP PG GL PGN
Sbjct: 820 KGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGL---PGNQ 876
Query: 105 KRCQRSGVPYE-GPGAPGGQ---QLRKSRARLPRTRPGREDAAVRGRNRDPAEPG---SL 157
G E GP P GQ + A + + R DA +G +P G S
Sbjct: 877 GPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 936
Query: 158 RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAG 217
P G P G + G G +RG+P PPG GP G G
Sbjct: 937 LPGPPGPPGPRGYPGIPGPK-GESIRGQPG-PPGPQGPPG------------------IG 976
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPA--RPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
+ R GP P PPGPP P+ PH T PG PP PP P
Sbjct: 977 YEGRQGP-------PGPPGPPGPPSFPGPHRQTISVPG------PPGPPGPPGPP 1018
Score = 51.2 bits (121), Expect = 2e-06
Identities = 60/216 (27%), Positives = 67/216 (31%), Gaps = 40/216 (18%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRA-----------------RLP 133
+PG G G+P +R +GP P G R + R P
Sbjct: 427 TPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGP 486
Query: 134 RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPG 191
R PG G P EPG S P AG V G PG P PPG
Sbjct: 487 RGFPGPPGPP--GVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 544
Query: 192 RSGPSG-----------------GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP 234
R GP G G + G A E L PGPP PP P
Sbjct: 545 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPG--PPGP 602
Query: 235 PGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
PGP L S GP + PP LP
Sbjct: 603 PGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLP 638
Score = 43.9 bits (102), Expect = 3e-04
Identities = 77/266 (28%), Positives = 93/266 (34%), Gaps = 54/266 (20%)
Query: 84 PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR-----PG 138
P P R PG G PG P R +G+ E G PG L +P PG
Sbjct: 793 PGPYGR--PGYKGEIGFPGRPGRPGMNGLKGE-KGEPGDASLGFGMRGMPGPPGPPGPPG 849
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGE--PKTPPGR---- 192
V N S RP G P G +GA +GE P PPG+
Sbjct: 850 PPGTPVYDSN---VFAESSRPGPPGLPGNQGPPGPKGA------KGEVGPPGPPGQFPFD 900
Query: 193 --------SGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPA-- 242
G G R AG + E G GF + PGPP PP P G P P
Sbjct: 901 FLQLEAEMKGEKGD-RGDAGQKGERGEPG-GGGFFGSSLPGPPG--PPGPRGYPGIPGPK 956
Query: 243 ------RPHNPTSRGP------GRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRV 290
+P P +GP GR PP PP P + + P P P
Sbjct: 957 GESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP--GP 1014
Query: 291 LTPPFTLLCALPERGSRTPSTRSAVL 316
PP T+ + G R +TR A+L
Sbjct: 1015 PGPPGTMGAS---SGVRLWATRQAML 1037
Score = 40.4 bits (93), Expect = 0.003
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 27/168 (16%)
Query: 93 GVTGLAVGPGNPKRC----QRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRN 148
G GL PG P ++ G PG G R A P + + +G
Sbjct: 698 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG----RPGFAGFPGPAGPKGNLGSKGER 753
Query: 149 RDPAEPGSL-RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG---------- 197
P G P S+ P G Q A G P P GR G G
Sbjct: 754 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 813
Query: 198 -GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARP 244
G+ G + + LG F +R PGPP PPGPP P P
Sbjct: 814 PGMNGLKGEKGEPGDASLG--FGMRGMPGPPG-----PPGPPGPPGTP 854
Score = 34.3 bits (77), Expect = 0.23
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 154 PGSLRPTSLGFPARAGQGQV-QGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAGHRAATA 210
PGS ++ R G+V +G G++ GEP P PGR+GP G
Sbjct: 314 PGSDSVSTWDGSVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSP-------CLPG 364
Query: 211 EHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG-PG 253
L S GP + P P GPP P R P G PG
Sbjct: 365 PPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPG 408
Score = 34.3 bits (77), Expect = 0.23
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG---------------AAPGRR 181
PG + ++RG+ P PG P +G+ R G G + PG
Sbjct: 953 PGPKGESIRGQ---PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPP 1009
Query: 182 LRGEPKTPPGRSGPSGGVRSGAGHRAATAE-HQLGAGFSV 220
P PPG G S GVR A +A + H++ G+ +
Sbjct: 1010 GPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLI 1049
Score = 32.3 bits (72), Expect = 0.89
Identities = 51/176 (28%), Positives = 57/176 (32%), Gaps = 48/176 (27%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVP-----YEGPGAPGGQQLRKSRARLPRTRPGREDAAVR 145
+PG G GP P G+P EG G P R + P+ PG +
Sbjct: 587 APGPAG-PPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG--PQGPPG-----LP 638
Query: 146 GRNRDPAEPGSLR----------PTSLGFPARAGQGQVQGAAPGRRLRGEPKTP------ 189
G DP PG P G P R G QG R RGE P
Sbjct: 639 GLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVG 698
Query: 190 ----PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLP----PAPPGP 237
PG GP G V Q G+ SV PGP R P P GP
Sbjct: 699 QPGLPGPPGPPGPV--------VYVSEQDGSVLSV---PGPEGRPGFAGFPGPAGP 743
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 157 LRPTSLGFPARAGQG---QVQGAAPGRRLRGEPKTPP---------GRSGPSGGVRSGAG 204
L P + F A+AG + QG ++R +P+ P G SG SG G
Sbjct: 197 LEPGAGLFVAQAGGADPDKFQGVIAELKVRRDPQVSPMHCLDEEGDDSDGASGDSGSGLG 256
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPAR 243
+ GA R PP PP G +R
Sbjct: 257 DARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSR 295
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 59.3 bits (142), Expect = 7e-09
Identities = 68/205 (33%), Positives = 74/205 (36%), Gaps = 33/205 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLA--VGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR 136
PP R+ P S PG GL V P P VP GP P G R
Sbjct: 530 PPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVP--GPQGPPGPPGRDGT------- 580
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTS-LGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRS 193
PGR+ G DP E G T GFP G +G PG RG PPG
Sbjct: 581 PGRD-----GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERG----PPGPQ 631
Query: 194 GPSGGVRSGAGHRAATAEHQLGAGFS--------VRNGPGPPARLPPAPPGPPLRPARPH 245
GP G H T G+GF R PGPP PP PG P P R
Sbjct: 632 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPG--PPGVPGLPGEPGRFG 689
Query: 246 NPTSRGPGRLLTCEPPSRKLPPPLP 270
+S PG P R+ PP P
Sbjct: 690 VNSSDVPGPAGLPGVPGREGPPGFP 714
Score = 52.0 bits (123), Expect = 1e-06
Identities = 68/235 (28%), Positives = 80/235 (34%), Gaps = 52/235 (22%)
Query: 52 RGRNGENADTARLFGTTVYTFEVLGALPPDRSPTP-------RSRVSPGVTGLAVGPGNP 104
+G GE D + FG PP TP PG GL PGN
Sbjct: 1000 KGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGL---PGNQ 1056
Query: 105 KRCQRSGVPYE-GPGAPGGQ---QLRKSRARLPRTRPGREDAAVRGRNRDPAEPG---SL 157
G E GP P GQ + A + + R DA +G +P G S
Sbjct: 1057 GPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 1116
Query: 158 RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAG 217
P G P G + G G +RG+P PPG GP G G
Sbjct: 1117 LPGPPGPPGPRGYPGIPGPK-GESIRGQPG-PPGPQGPPG------------------IG 1156
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPA--RPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
+ R GP P PPGPP P+ PH T PG PP PP P
Sbjct: 1157 YEGRQGP-------PGPPGPPGPPSFPGPHRQTISVPG------PPGPPGPPGPP 1198
Score = 51.2 bits (121), Expect = 2e-06
Identities = 60/216 (27%), Positives = 67/216 (31%), Gaps = 40/216 (18%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRA-----------------RLP 133
+PG G G+P +R +GP P G R + R P
Sbjct: 607 TPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGP 666
Query: 134 RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPG 191
R PG G P EPG S P AG V G PG P PPG
Sbjct: 667 RGFPGPPGPP--GVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 724
Query: 192 RSGPSG-----------------GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP 234
R GP G G + G A E L PGPP PP P
Sbjct: 725 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPG--PPGP 782
Query: 235 PGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLP 270
PGP L S GP + PP LP
Sbjct: 783 PGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLP 818
Score = 43.9 bits (102), Expect = 3e-04
Identities = 77/266 (28%), Positives = 93/266 (34%), Gaps = 54/266 (20%)
Query: 84 PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTR-----PG 138
P P R PG G PG P R +G+ E G PG L +P PG
Sbjct: 973 PGPYGR--PGYKGEIGFPGRPGRPGMNGLKGE-KGEPGDASLGFGMRGMPGPPGPPGPPG 1029
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGE--PKTPPGR---- 192
V N S RP G P G +GA +GE P PPG+
Sbjct: 1030 PPGTPVYDSN---VFAESSRPGPPGLPGNQGPPGPKGA------KGEVGPPGPPGQFPFD 1080
Query: 193 --------SGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPA-- 242
G G R AG + E G GF + PGPP PP P G P P
Sbjct: 1081 FLQLEAEMKGEKGD-RGDAGQKGERGEPG-GGGFFGSSLPGPPG--PPGPRGYPGIPGPK 1136
Query: 243 ------RPHNPTSRGP------GRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRV 290
+P P +GP GR PP PP P + + P P P
Sbjct: 1137 GESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP--GP 1194
Query: 291 LTPPFTLLCALPERGSRTPSTRSAVL 316
PP T+ + G R +TR A+L
Sbjct: 1195 PGPPGTMGAS---SGVRLWATRQAML 1217
Score = 40.4 bits (93), Expect = 0.003
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 27/168 (16%)
Query: 93 GVTGLAVGPGNPKRC----QRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRN 148
G GL PG P ++ G PG G R A P + + +G
Sbjct: 878 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG----RPGFAGFPGPAGPKGNLGSKGER 933
Query: 149 RDPAEPGSL-RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG---------- 197
P G P S+ P G Q A G P P GR G G
Sbjct: 934 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 993
Query: 198 -GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARP 244
G+ G + + LG F +R PGPP PPGPP P P
Sbjct: 994 PGMNGLKGEKGEPGDASLG--FGMRGMPGPPG-----PPGPPGPPGTP 1034
Score = 34.3 bits (77), Expect = 0.23
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 154 PGSLRPTSLGFPARAGQGQV-QGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAGHRAATA 210
PGS ++ R G+V +G G++ GEP P PGR+GP G
Sbjct: 494 PGSDSVSTWDGSVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSP-------CLPG 544
Query: 211 EHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG-PG 253
L S GP + P P GPP P R P G PG
Sbjct: 545 PPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPG 588
Score = 34.3 bits (77), Expect = 0.23
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG---------------AAPGRR 181
PG + ++RG+ P PG P +G+ R G G + PG
Sbjct: 1133 PGPKGESIRGQ---PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPP 1189
Query: 182 LRGEPKTPPGRSGPSGGVRSGAGHRAATAE-HQLGAGFSV 220
P PPG G S GVR A +A + H++ G+ +
Sbjct: 1190 GPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLI 1229
Score = 32.3 bits (72), Expect = 0.89
Identities = 51/176 (28%), Positives = 57/176 (32%), Gaps = 48/176 (27%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVP-----YEGPGAPGGQQLRKSRARLPRTRPGREDAAVR 145
+PG G GP P G+P EG G P R + P+ PG +
Sbjct: 767 APGPAG-PPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG--PQGPPG-----LP 818
Query: 146 GRNRDPAEPGSLR----------PTSLGFPARAGQGQVQGAAPGRRLRGEPKTP------ 189
G DP PG P G P R G QG R RGE P
Sbjct: 819 GLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVG 878
Query: 190 ----PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLP----PAPPGP 237
PG GP G V Q G+ SV PGP R P P GP
Sbjct: 879 QPGLPGPPGPPGPV--------VYVSEQDGSVLSV---PGPEGRPGFAGFPGPAGP 923
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 157 LRPTSLGFPARAGQG---QVQGAAPGRRLRGEPKTPP---------GRSGPSGGVRSGAG 204
L P + F A+AG + QG ++R +P+ P G SG SG G
Sbjct: 377 LEPGAGLFVAQAGGADPDKFQGVIAELKVRRDPQVSPMHCLDEEGDDSDGASGDSGSGLG 436
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPAR 243
+ GA R PP PP G +R
Sbjct: 437 DARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSR 475
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 59.3 bits (142), Expect = 7e-09
Identities = 72/234 (30%), Positives = 88/234 (37%), Gaps = 57/234 (24%)
Query: 78 LPPDRSPTPRSRVSPGVTGL--AVGP----GNPKRCQRSGVPYEGPGAPG--------GQ 123
LP D+ P S PG +G+ A GP G+P P PG+PG G+
Sbjct: 1046 LPGDQGE-PGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGE 1104
Query: 124 QLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSL----GFPARAGQGQVQGAAPG 179
Q + PR PGR P PGS P G P GQ G
Sbjct: 1105 QGLPG-IQGPRGSPGR-----------PGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGP 1152
Query: 180 RRLRGEP--KTPPGRSGPSG--------GVRSGAGHRAATAEHQLGAGFSV--------R 221
R L+G+P PPG GPSG G++ G + A+ H +G V R
Sbjct: 1153 RGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGER 1212
Query: 222 NGPGPPARLPP------APPGPP--LRPARPHNPTSRGPGRLLTCEPPSRKLPP 267
PG P PP PPGPP P P T R P + PP + PP
Sbjct: 1213 GDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPP 1266
Score = 51.2 bits (121), Expect = 2e-06
Identities = 57/196 (29%), Positives = 71/196 (36%), Gaps = 16/196 (8%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP P R G G+ G P R Y PG G+ K + P
Sbjct: 979 PPGDDGFPGERGDKGTPGMQGRRGEPGR-------YGPPGFHRGEPGEKGQPGPPGPPGP 1031
Query: 139 REDAAVRGRNRDPAEPGSL-RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG 197
+RG P PG P S G P +G + GA + +G+P + G GP G
Sbjct: 1032 PGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSG---IDGARGPKGNKGDPASHFGPPGPKG 1088
Query: 198 --GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG-PGR 254
G GH A+ E L R PG P PP GPP P P RG PG
Sbjct: 1089 EPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPG--PPGSSGPPGCPGDHGMPGLRGQPGE 1146
Query: 255 LLTCEPPSRKLPPPLP 270
+ P + P +P
Sbjct: 1147 MGDPGPRGLQGDPGIP 1162
Score = 48.1 bits (113), Expect = 2e-05
Identities = 73/256 (28%), Positives = 82/256 (32%), Gaps = 63/256 (24%)
Query: 52 RGRNGENADTARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSG 111
RG G D A FG E P + PG+ G PG P SG
Sbjct: 1068 RGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSG 1127
Query: 112 VPYEGPGAPGGQQLRKSRARLPRTRPGRE-DAAVRGRNRDPAEPG-------SLRPTSLG 163
P G PG + R + PG D RG DP PG S P G
Sbjct: 1128 PP----GCPGDHGMPGLRGQ-----PGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNG 1178
Query: 164 FPARAGQGQVQGAA------------------------------PGRRLRGEPKTPPGRS 193
GQ +GA+ PG R + P PPG S
Sbjct: 1179 LHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSS 1238
Query: 194 GPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPA-RLPPAPPGPPLRPARPHNPTSRGP 252
GP G +GA RA PGPP + PP P GP P P P G
Sbjct: 1239 GPPG--PAGATGRAPKDIPD----------PGPPGDQGPPGPDGPRGAPGPPGLP---GS 1283
Query: 253 GRLLTCEPPSRKLPPP 268
LL EP LP P
Sbjct: 1284 VDLLRGEPGDCGLPGP 1299
Score = 47.4 bits (111), Expect = 3e-05
Identities = 59/205 (28%), Positives = 69/205 (33%), Gaps = 31/205 (15%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYEGPGAPG--GQQLRKSRARLPRTRPGREDAAVRGRNR 149
PG G GN C P PG PG G+Q K LP + D G
Sbjct: 477 PGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEG 536
Query: 150 DPAEPGSLRPTSLGFPARAGQ--GQVQGAAPGRRLRGEPKTPPGRSGPSG-----GVRSG 202
P PG + + G P G V G + P PPG G G G
Sbjct: 537 PPGLPG--KHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGE 594
Query: 203 AGHRAATAEHQL----GAGFSVRNGP-------GPPARLPPAPPGPPLRPARPHNPTSRG 251
G +H+ G GF GP GPP P PPG P P +P RG
Sbjct: 595 KGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRG 654
Query: 252 P-------GRLLTCEP--PSRKLPP 267
P G ++C P R PP
Sbjct: 655 PDGLKGQKGDTISCNVTYPGRHGPP 679
Score = 47.0 bits (110), Expect = 3e-05
Identities = 61/205 (29%), Positives = 67/205 (32%), Gaps = 42/205 (20%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRD 150
SPG+ GL G SG+ GP P G K P + PG RG+
Sbjct: 1173 SPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGS-PGISPPGPRGKKGP 1231
Query: 151 PAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKT-PPGRSGPSGGVRSGAGHRAAT 209
P PGS P P AG A GR + P PPG GP G G R A
Sbjct: 1232 PGPPGSSGP-----PGPAG-------ATGRAPKDIPDPGPPGDQGPPGP----DGPRGAP 1275
Query: 210 AEHQLGAGFSVRNGPGPPARLP--PAPPGPPLRPARPHNPTSRG---------------- 251
L + G LP P PPGPP P P G
Sbjct: 1276 GPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGP 1335
Query: 252 ------PGRLLTCEPPSRKLPPPLP 270
PG PP RK P LP
Sbjct: 1336 HGFPGPPGEKGLPGPPGRKGPTGLP 1360
Score = 40.8 bits (94), Expect = 0.003
Identities = 57/188 (30%), Positives = 68/188 (36%), Gaps = 39/188 (20%)
Query: 84 PTPRSRVSP-GVTGLAVGPGN-------PKRCQRSGVPYE-GPGAPGGQQLRKSRARLP- 133
P PR + P G G + PG PK G P + GP P G + LP
Sbjct: 1223 PGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPG 1282
Query: 134 -----RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAA--PGRRLRGEP 186
R PG D + G P PG P GFP G+ +G PG P
Sbjct: 1283 SVDLLRGEPG--DCGLPGPPGPPGPPGP--PGYKGFPGCDGKDGQKGPVGFPG------P 1332
Query: 187 KTPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARP 244
+ P G GP G G+ G + T R PGPPA + P P L P
Sbjct: 1333 QGPHGFPGPPGEKGLPGPPGRKGPTGLP------GPRGEPGPPADVDDCPRIPGL----P 1382
Query: 245 HNPTSRGP 252
P RGP
Sbjct: 1383 GAPGMRGP 1390
Score = 40.4 bits (93), Expect = 0.003
Identities = 59/205 (28%), Positives = 71/205 (34%), Gaps = 53/205 (25%)
Query: 82 RSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGRED 141
R TP + PG G G+P G GP P G PG
Sbjct: 708 RPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGS-------------PG--- 751
Query: 142 AAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG---- 197
V G+ P +P LG P + G V G + RG+P PG GP+G
Sbjct: 752 --VNGQKGIPGDPAF---GHLGPPGKRGLSGVPGI---KGPRGDPGC-PGAEGPAGIPGF 802
Query: 198 ----GVRSGAGHRAATAEHQLGAGFSVRNGPGPPA----RLPPAPPGPPLRPARPHNPTS 249
G + GH AGF PGPP R P PG P P P +P +
Sbjct: 803 LGLKGPKGREGH----------AGFP--GVPGPPGHSCERGAPGIPGQPGLPGYPGSPGA 850
Query: 250 RG----PGRLLTCEPPSRKLPPPLP 270
G PG + P K P LP
Sbjct: 851 PGGKGQPGDVGPPGPAGMKGLPGLP 875
Score = 38.9 bits (89), Expect = 0.010
Identities = 59/219 (26%), Positives = 72/219 (32%), Gaps = 37/219 (16%)
Query: 86 PRSRVSPGVTGLAVGPGNPKRCQRSGVPYE----------GPGAPGGQQLRKSRARLPRT 135
P R PG G G P SG+P + GP G+ S+ P
Sbjct: 917 PGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGE 976
Query: 136 RPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGP 195
D G D PG G P R G PG + + P PPG G
Sbjct: 977 PGPPGDDGFPGERGDKGTPGM--QGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPG- 1033
Query: 196 SGGVRSGAGHRAATAEH-QLGA----GFSVRNG-------PGPPARL--PPAPPGPPLRP 241
S G+R G + + G+ GFS +G G PA PP P G P P
Sbjct: 1034 STGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSP 1093
Query: 242 ARPHN---------PTSRGP-GRLLTCEPPSRKLPPPLP 270
P + P +GP G PP PP P
Sbjct: 1094 GCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCP 1132
Score = 38.1 bits (87), Expect = 0.016
Identities = 50/169 (29%), Positives = 60/169 (35%), Gaps = 30/169 (17%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVP-YEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRD 150
PG+ G PG P +G+P + G P G R+ A P + RG
Sbjct: 779 PGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKG---REGHAGFPGVPGPPGHSCERGAPGI 835
Query: 151 PAEPGSLR-PTSLGFPARAGQGQVQGAAPGRRLRGEPKTP--PGRSGPSG--GVRSGAGH 205
P +PG P S G P GQ G ++G P P PG GP G G+ G
Sbjct: 836 PGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGD 895
Query: 206 RAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG-PG 253
PGPP P GP P P P RG PG
Sbjct: 896 DGL---------------PGPPG-----PKGPRGLPGFPGFPGERGKPG 924
Score = 37.4 bits (85), Expect = 0.028
Identities = 47/164 (28%), Positives = 56/164 (34%), Gaps = 20/164 (12%)
Query: 84 PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEG-PGAPGGQQLRKSRARLPRTRPGRED- 141
P +PG G G P + G P G PG PG R PG
Sbjct: 601 PGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPG-----------ERGHPGVPGH 649
Query: 142 AAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRS 201
VRG + + G ++ +P R G G PG + P+ PG SG G
Sbjct: 650 PGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGP-PGPKGFPGPQGAPGLSGSDG--HK 706
Query: 202 GAGHRAATAEHQLGAGFSVRNGP----GPPARLPPAPPGPPLRP 241
G TAE GF G G P PPGPP P
Sbjct: 707 GRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSP 750
Score = 36.6 bits (83), Expect = 0.047
Identities = 53/217 (24%), Positives = 67/217 (30%), Gaps = 44/217 (20%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYEGPGAPG-----------------------------G 122
PG G PG P G P PG PG G
Sbjct: 407 PGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPG 466
Query: 123 QQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTS-LGFPARAGQGQVQGAAPGRR 181
Q K + P R + + G EPG + P G P R G G
Sbjct: 467 PQGIKGKVGPPGGRGPKGEKGNEG--LCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLG 524
Query: 182 LRGEPKTPPGRSGPSG-----GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPG 236
+G+P PPG GP G G G++ A + + + GP PP PG
Sbjct: 525 TKGDP-GPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDG--PPGFPG 581
Query: 237 PPLRPARPHNPTSRG----PGRLLTCEPPSRKLPPPL 269
P R + +G PG P + P PL
Sbjct: 582 QPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPL 618
Score = 34.3 bits (77), Expect = 0.23
Identities = 60/226 (26%), Positives = 75/226 (33%), Gaps = 71/226 (31%)
Query: 86 PRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGP-GAPGGQQLRKSRARLPRTRPGREDAAV 144
P +R PG G+ V P +P +GP G PG PGR
Sbjct: 346 PGNRGHPGPPGVLVTPP---------LPLKGPPGDPGF--------------PGRY---- 378
Query: 145 RGRNRDPAEPGSLRPTSLGFPARAGQGQV-----QG-----AAPGRR-LRGEPKTPPGRS 193
G D PG P LG P A G + QG PG + G P + PG+
Sbjct: 379 -GETGDVGPPGP--PGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKP 435
Query: 194 GPSG--GVRSGAGHRAATAEHQLGAGF------SVRNGPGPP--------------ARLP 231
G G G+ G + + ++ GPP
Sbjct: 436 GKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACE 495
Query: 232 PAPPGPPLRPARPHNPTSRG----PGRLLT---CEPPSRKLPPPLP 270
P P GPP P P S+G PG L T PP + PP LP
Sbjct: 496 PGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLP 541
Score = 29.3 bits (64), Expect = 7.5
Identities = 53/192 (27%), Positives = 62/192 (32%), Gaps = 61/192 (31%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDP 151
PG GL PG P R PG G PG V+G+ DP
Sbjct: 213 PGEPGLVGPPGQPGR----------PGLKG--------------NPG---VGVKGQMGDP 245
Query: 152 AE---PGSLRPTSL----GFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG------- 197
E GS PT L F G+ ++G PG + G P PPGR G SG
Sbjct: 246 GEVGQQGSPGPTLLVEPPDFCLYKGEKGIKG-IPG--MVGLP-GPPGRKGESGIGAKGEK 301
Query: 198 ------GVRSGAGHRAATAEHQLGAGFSVRNGPG----------PPARLPPAPPGPPLRP 241
G R G + L + PG P R P PPG + P
Sbjct: 302 GIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTP 361
Query: 242 ARPHNPTSRGPG 253
P PG
Sbjct: 362 PLPLKGPPGDPG 373
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 58.9 bits (141), Expect = 9e-09
Identities = 96/369 (26%), Positives = 126/369 (34%), Gaps = 50/369 (13%)
Query: 80 PDRSPTPRSRVSPG---VTGLAVGPGNPKRCQRSG----------VPYEGPGAPGGQQLR 126
P SP P V+P V G A G +R+G P GP G R
Sbjct: 29 PPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSR 88
Query: 127 KSRARLPRTRPGREDAAVRGRNRDP---AEPGSLRPTSLGFPARAGQGQVQGAAPGRRLR 183
+R P + GR + A +N P + PG T+ P GQ ++ +A R
Sbjct: 89 NPASRPPAS--GRGERAPPAKNTSPGPVSSPGRASGTTR--PGPLGQKGLRISAEETVAR 144
Query: 184 GEPKTPPGRSGPSGGVRSGAGHRA------ATAEHQLGAGFSVRNGPGPPARLPPAPPGP 237
G+ P RS S G R A A AG V G P P A P P
Sbjct: 145 GKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEV----GLPRPAPSARPRP 200
Query: 238 PLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTL 297
P + GP + ++ P P R R A RP R L+ T
Sbjct: 201 P----------TEGPRKSVS-SASEHSTTEPSPAARRR-PSAGGGLQRPASRSLSSSATP 248
Query: 298 LCALPERGS------RTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPT 351
L + G R P+ S + L P A PLSS A P+
Sbjct: 249 LSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPS 308
Query: 352 RAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRT-PSPGPGPAPAL 410
+ A P+P P + LP+ + P L P +T PSP P P+
Sbjct: 309 PSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSP-PATPPSQ 367
Query: 411 QPYSLTRFP 419
P S+T P
Sbjct: 368 APPSMTTPP 376
Score = 58.9 bits (141), Expect = 9e-09
Identities = 87/278 (31%), Positives = 108/278 (38%), Gaps = 49/278 (17%)
Query: 186 PKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPG-PPLRPARP 244
P +PP S A A H L A FS P PP + P +PP PP+ P+
Sbjct: 633 PPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPP--PSPPVQAPFSPPASPPVSPSA- 689
Query: 245 HNPTSRGPGRLLTCE---PPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL 301
P S+ P L PPS PP+ + APPP P L+V P +
Sbjct: 690 -TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSP---PASP 745
Query: 302 PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSS-ERQAAPTRAFCSADPL 360
P S TP R L+ L + PS + PL+ QA P A L
Sbjct: 746 PMSPSATPPPRVPPLL-----AAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQAL 800
Query: 361 PRPPSFVP---------SLP-----SPQAQGQAVRQPRLLR------AALALGAPRGRTP 400
P PP+ P SLP +P Q V LL+ A+ L APR R P
Sbjct: 801 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR-RPP 859
Query: 401 SPGP-----GPAPAL-----QPYSLTRFPAS-LSLPDL 427
+PGP GP L P +R P+S LS PDL
Sbjct: 860 TPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 897
Score = 55.5 bits (132), Expect = 1e-07
Identities = 104/411 (25%), Positives = 132/411 (32%), Gaps = 118/411 (28%)
Query: 77 ALPPDRSPTPRSRVSPGVTGLAV---------------GPGNPKRCQRSGVPYEGPGAPG 121
ALPP ++P P SP ++ LA P +P P+ P +P
Sbjct: 626 ALPPLQAP-PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP 684
Query: 122 -------GQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQ 174
Q S A P P A+ P P + P P A QV
Sbjct: 685 VSPSATPPSQAPPSLAAPPLQVPPSPPAS------PPMSPSATPPPQAPPPLAAPPLQVP 738
Query: 175 GAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP 234
+ P TPP R P L A ++ P PPA LP +P
Sbjct: 739 PSPPASPPMSPSATPPPRVPP------------------LLAAPPLQVPPSPPASLPMSP 780
Query: 235 ---PGPPLRPA-------------------RPHNPTSRGPGRLLTCEPPSR--------- 263
P P PA P +P++ P L PP
Sbjct: 781 LAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLL 840
Query: 264 KLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL--PERGSRTPSTRSAVLVDRVA 321
++PP P + PPT P V P TL A P SR+PS S + +A
Sbjct: 841 QVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPS--STLSGPDLA 898
Query: 322 GLGTELTLTPSSRRAHGS-------------------HPLSSERQAAPTRAFCSAD--PL 360
G + T TP R + S HP + R AP AF A PL
Sbjct: 899 GHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPL 958
Query: 361 PRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPG---PGPAP 408
P PP+ P A G L P TP+PG PGP+P
Sbjct: 959 PWPPATGPG----SADG--------LCTIYETEGPESATPAPGALDPGPSP 997
Score = 54.3 bits (129), Expect = 2e-07
Identities = 101/408 (24%), Positives = 140/408 (34%), Gaps = 98/408 (24%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGP--------------------- 117
P +P+P G VG P R P EGP
Sbjct: 167 PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARR 226
Query: 118 --GAPGGQQLRKSRA----RLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQG 171
A GG Q SR+ P + P R + RG R PA P +P L
Sbjct: 227 RPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGL--------- 277
Query: 172 QVQGAAPGRRLRGEPKTPPGR-SGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGP---- 226
+ LR TPP + + P+ G S + + +G R P P
Sbjct: 278 --------QALRPPQVTPPRKDAAPALGPLSSSPLATPSP-----SGTKARPVPPPDNAA 324
Query: 227 ---PARLPPAPP-------GPP---------LRPARPHNPTSRGPGRLLT---CEPPSRK 264
PA LPP+PP PP P+ P P S+ P + T PPS +
Sbjct: 325 TPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQ 384
Query: 265 LPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTL--LCALPERGSRTPSTRSAVLVDRVAG 322
PP+ + P P L+ P L L A GS T + L ++
Sbjct: 385 TIPPIQV--------PHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLT--MSP 434
Query: 323 LGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQ 382
T+ +LT SR P S+ + P +A S P + + SP + +
Sbjct: 435 RQTQASLTSPSR------PASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTI-H 487
Query: 383 PRLLRAALALGAPRGRTPS---PGPGPAPALQPYSLTRFPASLSLPDL 427
P ++LA +P+ S P +L P SL PASL+ P L
Sbjct: 488 PLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPL 535
Score = 40.0 bits (92), Expect = 0.004
Identities = 51/174 (29%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 242 ARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL 301
A P +R PG LLT PP PPP + VL V + +
Sbjct: 12 AAARTPAARAPG-LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 302 PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQ---AAPTRAFCSAD 358
PE R TRSA R + P+S R + P + ++P RA +
Sbjct: 71 PESAPRAGPTRSAGTSSR-----NPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTR 125
Query: 359 PLPRPPSFVP-SLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG-PAPAL 410
P P + S A+G+A P+ R+AL+ GA R T P PG P+PA+
Sbjct: 126 PGPLGQKGLRISAEETVARGKATEAPK--RSALSAGARRD-TSGPTPGTPSPAM 176
Score = 31.2 bits (69), Expect = 2.0
Identities = 69/263 (26%), Positives = 80/263 (30%), Gaps = 66/263 (25%)
Query: 224 PGPPARLPPAPP---GPPLRPARPHNPTSRGPG-----RLLTCEP-------PSRKLPPP 268
P PA PP P P PA P TS P LT P S P
Sbjct: 444 PSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAP 503
Query: 269 L-----PLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRT-------------PS 310
L P ++ LAPP P + TPP L +L +T P
Sbjct: 504 LSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPC 563
Query: 311 TRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSL 370
L + L T TPSS + QA P A LP PP +
Sbjct: 564 PAPCPLQAPPSPLTTPPPETPSSIA-------TPPPQAPPALASPPLQGLPSPPLSPLAT 616
Query: 371 PSPQAQG-------QAVRQPRLLRAALALGAPRGRTP------------SPGPGP----- 406
P PQA QA P L P + P SP P P
Sbjct: 617 PPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP 676
Query: 407 --APALQPYSLTRFPASLSLPDL 427
PA P S + P S + P L
Sbjct: 677 FSPPASPPVSPSATPPSQAPPSL 699
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 58.5 bits (140), Expect = 1e-08
Identities = 90/325 (27%), Positives = 109/325 (33%), Gaps = 60/325 (18%)
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEP------------GSLRPTSLGF 164
P P G + ++ P + PGR G P EP GS +P S+
Sbjct: 127 PLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGS-KPDSIPP 185
Query: 165 PARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSG--AGHRAATAEHQLGAGFSVRN 222
P + +Q + RG P P G PS G G+R LG G S+R
Sbjct: 186 PVPSTPRPIQSSPHN---RGSPPVPGGPRQPSPGPTPPPFPGNRGTA----LGGG-SIRQ 237
Query: 223 GP----GPPARLPPAPPGPPL----RPARPHNPTSRGPG---RLLTCEPPSRKLPP---- 267
P P + PP PP P +P P P P + PP PP
Sbjct: 238 SPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPST 297
Query: 268 PLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTEL 327
P P S+ PPP RP PP LP S T L R L +
Sbjct: 298 PRPSASSQAPPPPPPPSRP-----GPP-----PLPPSSSGNDETPR--LPQRNLSLSSST 345
Query: 328 TLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLR 387
PS R+ P SER P R PP LP P + R L
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVR---------DPPGRSGPLPPPPPVSRNGSTSRALP 396
Query: 388 AALALGAPRGRTPSPGPGPAPALQP 412
A L + R SP GP P L P
Sbjct: 397 ATPQLPS-RSGVDSPRSGPRPPLPP 420
Score = 50.8 bits (120), Expect = 2e-06
Identities = 67/243 (27%), Positives = 85/243 (34%), Gaps = 30/243 (12%)
Query: 191 GRSGPSGGVRSGAGHRAATAEHQLGA----GFSVRNGPGPPARLPPAPPGPPLRPARPHN 246
G G GG G G Q G + R+ +R P PPG A+P +
Sbjct: 83 GGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFS 142
Query: 247 PTSRGPGRLLT---------CEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTL 297
P S GPGR EP ++PPP P S+ PPP + + P
Sbjct: 143 PPS-GPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNR 201
Query: 298 LCALPERGSRTPS---TRSAVLVDRVAGL-GTELTLTPSSRRAHGSHPLSSERQAAPTRA 353
G R PS T +R L G + +P S S P S+ PT +
Sbjct: 202 GSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLS----SSSPFSNRPPLPPTPS 257
Query: 354 FCSADPLPRPPSFV---PSL-----PSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG 405
D P PP V PS+ P P Q P R + + AP P PG
Sbjct: 258 RALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPG 317
Query: 406 PAP 408
P P
Sbjct: 318 PPP 320
Score = 50.4 bits (119), Expect = 3e-06
Identities = 74/263 (28%), Positives = 96/263 (36%), Gaps = 33/263 (12%)
Query: 179 GRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGP-PARLPPAPPGP 237
GR +P +PP SGP GHR+ E Q R G P +PP P
Sbjct: 133 GRSTSAKPFSPP--SGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPST 190
Query: 238 PLRPAR--PHN----PTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVL 291
P RP + PHN P GP +P PPP P +R ++R
Sbjct: 191 P-RPIQSSPHNRGSPPVPGGPR-----QPSPGPTPPPFP--GNRGTALGGGSIRQSPLSS 242
Query: 292 TPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPS-SRRAHGSHPLSSERQAAP 350
+ PF+ LP SR L D+ + PS R A P + + P
Sbjct: 243 SSPFSNRPPLPPTPSRA-------LDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 351 TR----AFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG- 405
+ A A P P PPS P P + PRL + L+L + PSPG
Sbjct: 296 STPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSG 355
Query: 406 ---PAPALQPYSLTRFPASLSLP 425
P P+ +P R P S P
Sbjct: 356 PLPPPPSERPPPPVRDPPGRSGP 378
Score = 45.4 bits (106), Expect = 1e-04
Identities = 63/221 (28%), Positives = 81/221 (36%), Gaps = 37/221 (16%)
Query: 77 ALPPDRSPTPRS-RVSPGVTGLAVGPGNPKRCQRSGVPYEGPG----APGGQQLRKS--- 128
++PP TPR + SP G PG P++ P PG A GG +R+S
Sbjct: 182 SIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLS 241
Query: 129 -------RARLPRTRPGREDAAVRGRNRDPAEPGSLRPT----SLGFPARAGQGQVQGAA 177
R LP T P R A+ + P P RP+ ++ P +
Sbjct: 242 SSSPFSNRPPLPPT-PSR---ALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPST 297
Query: 178 PGRRLRGE---PKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGP-PARLPPA 233
P + P PP R GP S +G+ Q S P P P R P
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPL 357
Query: 234 PPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRS 274
PP P RP P PGR S LPPP P+ R+
Sbjct: 358 PPPPS---ERPPPPVRDPPGR-------SGPLPPPPPVSRN 388
Score = 38.5 bits (88), Expect = 0.012
Identities = 59/211 (27%), Positives = 76/211 (36%), Gaps = 47/211 (22%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP ++ P +P + + P P R G P P + G + RLP+
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDET----PRLPQ---- 336
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGG 198
R+ + S P L P R+G P R + PPGRSGP
Sbjct: 337 ----------RNLSLSSSTPP--LPSPGRSGP---LPPPPSERPPPPVRDPPGRSGPLPP 381
Query: 199 V----RSGAGHRAATAEHQLGAGFSV---RNGPGPPARLPPAPPGPPLRPARPHNPTS-- 249
R+G+ RA A QL + V R+GP PP PP P A P P S
Sbjct: 382 PPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPL-----PPDRPSAGAPPPPPPSTS 436
Query: 250 -RGPGRLLTCEP---------PSRKLPPPLP 270
R + CE P LPPP P
Sbjct: 437 IRNGFQDSPCEDEWESRFYFHPISDLPPPEP 467
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 58.5 bits (140), Expect = 1e-08
Identities = 90/325 (27%), Positives = 109/325 (33%), Gaps = 60/325 (18%)
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEP------------GSLRPTSLGF 164
P P G + ++ P + PGR G P EP GS +P S+
Sbjct: 127 PLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGS-KPDSIPP 185
Query: 165 PARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSG--AGHRAATAEHQLGAGFSVRN 222
P + +Q + RG P P G PS G G+R LG G S+R
Sbjct: 186 PVPSTPRPIQSSPHN---RGSPPVPGGPRQPSPGPTPPPFPGNRGTA----LGGG-SIRQ 237
Query: 223 GP----GPPARLPPAPPGPPL----RPARPHNPTSRGPG---RLLTCEPPSRKLPP---- 267
P P + PP PP P +P P P P + PP PP
Sbjct: 238 SPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPST 297
Query: 268 PLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTEL 327
P P S+ PPP RP PP LP S T L R L +
Sbjct: 298 PRPSASSQAPPPPPPPSRP-----GPP-----PLPPSSSGNDETPR--LPQRNLSLSSST 345
Query: 328 TLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLR 387
PS R+ P SER P R PP LP P + R L
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVR---------DPPGRSGPLPPPPPVSRNGSTSRALP 396
Query: 388 AALALGAPRGRTPSPGPGPAPALQP 412
A L + R SP GP P L P
Sbjct: 397 ATPQLPS-RSGVDSPRSGPRPPLPP 420
Score = 50.8 bits (120), Expect = 2e-06
Identities = 67/243 (27%), Positives = 85/243 (34%), Gaps = 30/243 (12%)
Query: 191 GRSGPSGGVRSGAGHRAATAEHQLGA----GFSVRNGPGPPARLPPAPPGPPLRPARPHN 246
G G GG G G Q G + R+ +R P PPG A+P +
Sbjct: 83 GGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFS 142
Query: 247 PTSRGPGRLLT---------CEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTL 297
P S GPGR EP ++PPP P S+ PPP + + P
Sbjct: 143 PPS-GPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNR 201
Query: 298 LCALPERGSRTPS---TRSAVLVDRVAGL-GTELTLTPSSRRAHGSHPLSSERQAAPTRA 353
G R PS T +R L G + +P S S P S+ PT +
Sbjct: 202 GSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLS----SSSPFSNRPPLPPTPS 257
Query: 354 FCSADPLPRPPSFV---PSL-----PSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG 405
D P PP V PS+ P P Q P R + + AP P PG
Sbjct: 258 RALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPG 317
Query: 406 PAP 408
P P
Sbjct: 318 PPP 320
Score = 50.4 bits (119), Expect = 3e-06
Identities = 74/263 (28%), Positives = 96/263 (36%), Gaps = 33/263 (12%)
Query: 179 GRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGP-PARLPPAPPGP 237
GR +P +PP SGP GHR+ E Q R G P +PP P
Sbjct: 133 GRSTSAKPFSPP--SGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPST 190
Query: 238 PLRPAR--PHN----PTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVL 291
P RP + PHN P GP +P PPP P +R ++R
Sbjct: 191 P-RPIQSSPHNRGSPPVPGGPR-----QPSPGPTPPPFP--GNRGTALGGGSIRQSPLSS 242
Query: 292 TPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPS-SRRAHGSHPLSSERQAAP 350
+ PF+ LP SR L D+ + PS R A P + + P
Sbjct: 243 SSPFSNRPPLPPTPSRA-------LDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 351 TR----AFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG- 405
+ A A P P PPS P P + PRL + L+L + PSPG
Sbjct: 296 STPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSG 355
Query: 406 ---PAPALQPYSLTRFPASLSLP 425
P P+ +P R P S P
Sbjct: 356 PLPPPPSERPPPPVRDPPGRSGP 378
Score = 45.4 bits (106), Expect = 1e-04
Identities = 63/221 (28%), Positives = 81/221 (36%), Gaps = 37/221 (16%)
Query: 77 ALPPDRSPTPRS-RVSPGVTGLAVGPGNPKRCQRSGVPYEGPG----APGGQQLRKS--- 128
++PP TPR + SP G PG P++ P PG A GG +R+S
Sbjct: 182 SIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLS 241
Query: 129 -------RARLPRTRPGREDAAVRGRNRDPAEPGSLRPT----SLGFPARAGQGQVQGAA 177
R LP T P R A+ + P P RP+ ++ P +
Sbjct: 242 SSSPFSNRPPLPPT-PSR---ALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPST 297
Query: 178 PGRRLRGE---PKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGP-PARLPPA 233
P + P PP R GP S +G+ Q S P P P R P
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPL 357
Query: 234 PPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRS 274
PP P RP P PGR S LPPP P+ R+
Sbjct: 358 PPPPS---ERPPPPVRDPPGR-------SGPLPPPPPVSRN 388
Score = 38.5 bits (88), Expect = 0.012
Identities = 59/211 (27%), Positives = 76/211 (36%), Gaps = 47/211 (22%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP ++ P +P + + P P R G P P + G + RLP+
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDET----PRLPQ---- 336
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGG 198
R+ + S P L P R+G P R + PPGRSGP
Sbjct: 337 ----------RNLSLSSSTPP--LPSPGRSGP---LPPPPSERPPPPVRDPPGRSGPLPP 381
Query: 199 V----RSGAGHRAATAEHQLGAGFSV---RNGPGPPARLPPAPPGPPLRPARPHNPTS-- 249
R+G+ RA A QL + V R+GP PP PP P A P P S
Sbjct: 382 PPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPL-----PPDRPSAGAPPPPPPSTS 436
Query: 250 -RGPGRLLTCEP---------PSRKLPPPLP 270
R + CE P LPPP P
Sbjct: 437 IRNGFQDSPCEDEWESRFYFHPISDLPPPEP 467
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 57.8 bits (138), Expect = 2e-08
Identities = 61/201 (30%), Positives = 73/201 (36%), Gaps = 34/201 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPG------NPKRCQRSGVPYE----------GPGAPGG 122
PP + TP + PG G PG P GVP + GP P G
Sbjct: 715 PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG 774
Query: 123 QQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTS-LGFPARAGQ-----GQVQGA 176
Q K P PG + G P E G P GFP GQ G+ +
Sbjct: 775 QPGDKGEGGAPGL-PG-----IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERG 828
Query: 177 APGRRLRGEPKT---PPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPP-ARL 230
APG + G P PPG SGP+G G + G R + R PGPP +
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG 888
Query: 231 PPAPPGPPLRPARPHNPTSRG 251
P PPGP P + P G
Sbjct: 889 NPGPPGPSGSPGKDGPPGPAG 909
Score = 52.8 bits (125), Expect = 6e-07
Identities = 56/180 (31%), Positives = 69/180 (38%), Gaps = 31/180 (17%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVP--YEGPGAPG--------GQQLRKSRARLPRTRPGRED 141
PG GL G P +G P G G PG G + + A +P PG +
Sbjct: 404 PGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGV-PGAKG 462
Query: 142 AAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG--GV 199
G++ P EPG+ G P AG+ APG R P PG GP+G G
Sbjct: 463 ED--GKDGSPGEPGAN-----GLPGAAGER----GAPGFRGPAGPNGIPGEKGPAGERGA 511
Query: 200 RSGAGHRAATAE---HQLGAGFSVRNGPGPP----ARLPPAPPGPPLRPARPHNPTSRGP 252
AG R A E + G +R PG P + P PPG RP P GP
Sbjct: 512 PGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP 571
Score = 52.4 bits (124), Expect = 8e-07
Identities = 64/212 (30%), Positives = 82/212 (38%), Gaps = 30/212 (14%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGA---PGGQQLRKSRARLPRT 135
P +R P P +PG+ G A GP P+ + + P PGA PG Q + R L
Sbjct: 680 PGERGP-PGLAGAPGLRGGA-GPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSP 737
Query: 136 RPGREDAAVRGRNRD--PAEPGSLRPTS-LGFPARAGQ--GQVQGAAPGRRLRGEPKTPP 190
P + G D P + G PT +G P AGQ + +G APG P+ P
Sbjct: 738 GPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSP 797
Query: 191 GRSGPSG--------------GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPG 236
G G +G G G G R A E G V PG P PPG
Sbjct: 798 GERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG--PAGPPG 855
Query: 237 PPLRPARPHNPTSRGPGRLLTCEPPSRKLPPP 268
P + + + GPG P +R LP P
Sbjct: 856 P--QGVKGERGSPGGPG--AAGFPGARGLPGP 883
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/179 (31%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYE----GPGAPGGQQLRKSRARLPR 134
PP S P S SPG G PG P + SG P GP P G+ R P
Sbjct: 184 PPGTSGHPGSPGSPGYQG---PPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPG 240
Query: 135 TRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSG 194
R ++G P PG GF R G+ G APG L+GE PG +G
Sbjct: 241 ERGLPGPPGIKGPAGIPGFPG--MKGHRGFDGRNGEKGETG-APG--LKGE-NGLPGENG 294
Query: 195 PSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG 251
G G R G R GA + N + P PPGPP P +P ++G
Sbjct: 295 APGPMGPRGAPGERGRPG--LPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKG 351
Score = 47.0 bits (110), Expect = 3e-05
Identities = 49/160 (30%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 91 SPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRD 150
+PG+ G PG +G P GP P G + R LP R + RG +
Sbjct: 280 APGLKGENGLPGE------NGAP--GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331
Query: 151 PAEPGSLRPTSLGFPARAG-QGQV-------QGAAPGRRLRGEPKTPPGRSGPSG--GVR 200
P PG P + GFP G +G+V APG+R P+ G GP G G+
Sbjct: 332 PGPPGP--PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGIN 389
Query: 201 SGAGHRAATAEHQLGAGFSVRNGPGPP----ARLPPAPPG 236
G + AG PG P AR PP P G
Sbjct: 390 GSPGGKGEMGP----AGI-----PGAPGLMGARGPPGPAG 420
Score = 45.4 bits (106), Expect = 1e-04
Identities = 48/168 (28%), Positives = 57/168 (33%), Gaps = 33/168 (19%)
Query: 84 PTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAA 143
P P V P G P + P GAPG Q R + R A
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE----RGAAG 1104
Query: 144 VRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGE--PKTPPGRSGPSG---- 197
++G P PG+ G P AGQ G+ RG P PPG+ G SG
Sbjct: 1105 IKGHRGFPGNPGAP-----GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159
Query: 198 ----GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRP 241
G R G R + PG P + P PPGPP P
Sbjct: 1160 IGPPGPRGNRGERGS------------EGSPGHPGQ--PGPPGPPGAP 1193
Score = 42.7 bits (99), Expect = 7e-04
Identities = 53/195 (27%), Positives = 71/195 (36%), Gaps = 19/195 (9%)
Query: 76 GALPPDRSPTPRSRVSP-GVTGLAVGPGNPKRCQRSGVP----YEGP-GAPGGQQLRKSR 129
G P P P + P G G G P R G+P +GP G PG ++ R
Sbjct: 207 GQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHR 266
Query: 130 ARLPRTRPGREDAA--VRGRNRDPAEPGSLRPTS-LGFPARAGQGQVQGAAPGRRLRGEP 186
R E A ++G N P E G+ P G P G+ + GAA G R
Sbjct: 267 GFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAA-GARGNDGA 325
Query: 187 KTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPP---------APPGP 237
+ G+ GP G + + A+ ++G S + P R P PPGP
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP 385
Query: 238 PLRPARPHNPTSRGP 252
P P GP
Sbjct: 386 PGINGSPGGKGEMGP 400
Score = 42.0 bits (97), Expect = 0.001
Identities = 55/182 (30%), Positives = 61/182 (33%), Gaps = 55/182 (30%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP S +P PG G PG+P GV GP GQ
Sbjct: 892 PPGPSGSPGKDGPPGPAGNTGAPGSP------GV--SGPKGDAGQ--------------- 928
Query: 139 REDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG- 197
P E GS P + G P G + G R L G PPG GP G
Sbjct: 929 ------------PGEKGS--PGAQGPPGAPGPLGIAGITGARGLAG----PPGMPGPRGS 970
Query: 198 ----GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRG-P 252
GV+ +G A G S GP P L P G P R NP S G P
Sbjct: 971 PGPQGVKGESGKPGAN-------GLSGERGPPGPQGL-PGLAGTAGEPGRDGNPGSDGLP 1022
Query: 253 GR 254
GR
Sbjct: 1023 GR 1024
Score = 40.4 bits (93), Expect = 0.003
Identities = 89/355 (25%), Positives = 114/355 (32%), Gaps = 65/355 (18%)
Query: 78 LPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVP-YEG-PGAPGGQQLRKSRARLPRT 135
+P ++ P R +PG G G P R G P G PG+PGG
Sbjct: 499 IPGEKGPAGE-RGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPG--------SDG 549
Query: 136 RPGREDAAVRGRNRDPAEPGSLRPTS----LGFPARAGQGQVQG--------------AA 177
+PG + +G + P PG P +GFP G G
Sbjct: 550 KPGPPGS--QGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGP 607
Query: 178 PGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQL-GAGFSVRNGPGPPARL-PPAPP 235
PG+ P+ PPG +GP GG + G L G G GPP P P
Sbjct: 608 PGKNGETGPQGPPGPTGP-GGDKGDTGPPGPQGLQGLPGTG-------GPPGENGKPGEP 659
Query: 236 GPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPF 295
GP P P +G P + PP L A PP PP
Sbjct: 660 GPKGDAGAPGAPGGKG-----DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG 714
Query: 296 TLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFC 355
P + TP + + GLG +P + G P P +
Sbjct: 715 ------PPGAAGTPGLQG--MPGERGGLG-----SPGPKGDKG-EPGGPGADGVPGKDGP 760
Query: 356 SADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAP--RGRTPSPGPGPAP 408
P P P + +G A P L A G+P RG T PGP P
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGA---PGLPGIAGPRGSPGERGETGPPGPAGFP 812
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 50/138 (36%), Gaps = 38/138 (27%)
Query: 133 PRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPG- 191
P+ PG + GRN DP PG +P S G P PPG
Sbjct: 107 PKGDPG--PPGIPGRNGDPGIPG--QPGSPGSPG----------------------PPGI 140
Query: 192 -RSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSR 250
S P+G + + + + G + PGP PP PPGPP P +P S
Sbjct: 141 CESCPTGPQNYSPQYDSYDVKSGVAVG-GLAGYPGPAG--PPGPPGPPGTSGHPGSPGSP 197
Query: 251 G-------PGRLLTCEPP 261
G PG+ PP
Sbjct: 198 GYQGPPGEPGQAGPSGPP 215
Score = 32.7 bits (73), Expect = 0.68
Identities = 46/161 (28%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 76 GALPPDRSPTPR-SRVSPGVTGLAVGPGNPKRCQRSGVPYE-----GPGAPGGQQLRKSR 129
G P +P P SR +PG G G +G+ PGAPG +
Sbjct: 1068 GPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQ 1127
Query: 130 ARLPRTRPGREDAAVRGRNRDPAEPG-SLRPTSLGFPARAGQGQVQGA--APGRRLRGEP 186
+ P V G + P + G S P +G P G +G+ +PG + P
Sbjct: 1128 GAIGSPGPAGPRGPV-GPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGP 1186
Query: 187 KTPPGRSGP-SGGVRSGAGHRAATAEHQLGAGFSVRNGPGP 226
PPG GP GGV GA A + G GF+ G P
Sbjct: 1187 PGPPGAPGPCCGGV--GAAAIAGIGGEKAG-GFAPYYGDEP 1224
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 57.4 bits (137), Expect = 3e-08
Identities = 103/442 (23%), Positives = 143/442 (32%), Gaps = 82/442 (18%)
Query: 12 TPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENADTARLFGTTVYT 71
TP+ TCQ P ++ P+ + + + T + ++
Sbjct: 324 TPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQ----ATHS 379
Query: 72 FEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRAR 131
F L P +P P++ + + L P P S + P AP + +A
Sbjct: 380 FLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP 439
Query: 132 LPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPG 191
A P P + P+ A QV + P TPP
Sbjct: 440 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP 499
Query: 192 RSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLR-----PAR--- 243
++ P A QL PP + PPA PPL+ PA
Sbjct: 500 QAPPP----------LAAPPLQLAK---------PPPQAPPALATPPLQALPSPPASFPG 540
Query: 244 --PHNPTSRGPGRLLTCEPPSR---------KLPPPLPLCRSRWVLAPPPTVRPRLRVLT 292
P +P++ P L PP ++PP P + PPT P V
Sbjct: 541 QAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 600
Query: 293 PPFTLLCAL--PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGS----------- 339
P TL A P SR+PS S + +AG + T TP R + S
Sbjct: 601 PRLTLALAPGPPPPPSRSPS--STLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPP 658
Query: 340 --------HPLSSERQAAPTRAFCSAD--PLPRPPSFVPSLPSPQAQGQAVRQPRLLRAA 389
HP + R AP AF A PLP PP+ P A G L
Sbjct: 659 PDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPG----SADG--------LCTI 706
Query: 390 LALGAPRGRTPSPG---PGPAP 408
P TP+PG PGP+P
Sbjct: 707 YETEGPESATPAPGALDPGPSP 728
Score = 54.7 bits (130), Expect = 2e-07
Identities = 104/390 (26%), Positives = 128/390 (32%), Gaps = 123/390 (31%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGP--------------------- 117
P +P+P G VG P R P EGP
Sbjct: 167 PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARR 226
Query: 118 --GAPGGQQLRKSRA----RLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQG 171
A GG Q SR+ P + P R + RG R PA P +P L
Sbjct: 227 RPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGL--------- 277
Query: 172 QVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLP 231
+ LR TPP + AA A L + S P P A L
Sbjct: 278 --------QALRPPQVTPPRKD-------------AAPALGPLSS--SPLATPSPSAAL- 313
Query: 232 PAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVL 291
PP PA PH+ + LTC+ L PLPL P P+ P L+ L
Sbjct: 314 -QSQAPPTLPATPHSSS-------LTCQ-----LATPLPLA------PPSPSAPPSLQTL 354
Query: 292 TPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHG---SHPLS----S 344
P TP +++ LG +P+ + H S PLS
Sbjct: 355 PSP-----------PATPPSQA------TTSLG-----SPTLQATHSFLPSPPLSPLATP 392
Query: 345 ERQAAPTRAFCSADPLPRPPSFVP----SLPSPQAQGQAVRQPRLLRAALALGAPRGRTP 400
QA P A P PP+ P + PSPQA P L L L AP P
Sbjct: 393 PPQAPPALALPPLQAPPSPPASPPLSPLATPSPQA-------PNALAVHL-LQAPFSPPP 444
Query: 401 SP---GPGPAPALQPYSLTRFPASLSLPDL 427
SP P PA P S + P S + P L
Sbjct: 445 SPPVQAPFSPPASPPVSPSATPPSQAPPSL 474
Score = 49.3 bits (116), Expect = 7e-06
Identities = 100/389 (25%), Positives = 126/389 (32%), Gaps = 80/389 (20%)
Query: 80 PDRSPTPRSRVSPG---VTGLAVGPGNPKRCQRSG----------VPYEGPGAPGGQQLR 126
P SP P V+P V G A G +R+G P GP G R
Sbjct: 29 PPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSR 88
Query: 127 KSRARLPRTRPGREDAAVRGRNRDP---AEPGSLRPTSLGFPARAGQGQVQGAAPGRRLR 183
+R P + GR + A +N P + PG T+ P GQ ++ +A R
Sbjct: 89 NPASRPPAS--GRGERAPPAKNTSPGPVSSPGRASGTTR--PGPLGQKGLRISAEETVAR 144
Query: 184 GEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPAR 243
G+ P RS S G R R+ GP P P P +
Sbjct: 145 GKATEAPKRSALSAGAR--------------------RDTSGPT----PGTPSPAMARRS 180
Query: 244 PHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRV-------LTPPFT 296
T G LP P P R R PPT PR V T P
Sbjct: 181 RAAGTEVG-------------LPRPAPSARPR-----PPTEGPRKSVSSASEHSTTEPSP 222
Query: 297 LLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRR-----AHGSHP----LSSERQ 347
P G S L L + PS+R AH S P L + R
Sbjct: 223 AARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP 282
Query: 348 AAPTRAFCSADPLPRPPSFVP-SLPSPQAQGQAVRQPRLLRAALALGAP-RGRTPSPGPG 405
T A P P S P + PSP A Q+ P L + + TP P
Sbjct: 283 PQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAP 342
Query: 406 PAPALQPYSLTRFPASLSLPDLVFTSVGS 434
P+P+ P T + P TS+GS
Sbjct: 343 PSPSAPPSLQTLPSPPATPPSQATTSLGS 371
Score = 40.0 bits (92), Expect = 0.004
Identities = 51/174 (29%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 242 ARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCAL 301
A P +R PG LLT PP PPP + VL V + +
Sbjct: 12 AAARTPAARAPG-LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 302 PERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQ---AAPTRAFCSAD 358
PE R TRSA R + P+S R + P + ++P RA +
Sbjct: 71 PESAPRAGPTRSAGTSSR-----NPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTR 125
Query: 359 PLPRPPSFVP-SLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPG-PAPAL 410
P P + S A+G+A P+ R+AL+ GA R T P PG P+PA+
Sbjct: 126 PGPLGQKGLRISAEETVARGKATEAPK--RSALSAGARRD-TSGPTPGTPSPAM 176
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 56.2 bits (134), Expect = 6e-08
Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 26/173 (15%)
Query: 134 RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPK---TPP 190
R PGRE + P P ++R +GQ P R+ G P +P
Sbjct: 216 RLHPGREGPPAPPPVKPPPSPVNIRT------GPSGQSLAPPPPPYRQPPGVPNGPSSPT 269
Query: 191 GRSGPSGGVRSGAGHRA--------ATAEHQLGAGFSVRNGPGPPARLPP----APPGPP 238
S P R + HR A + + N P PPAR PP APP PP
Sbjct: 270 NESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPP 329
Query: 239 --LRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLR 289
+R P P R+ EPPSR PPP P SR PPP P LR
Sbjct: 330 PVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPP---SRTPAGPPPPPPPPLR 379
Score = 47.4 bits (111), Expect = 3e-05
Identities = 79/300 (26%), Positives = 102/300 (34%), Gaps = 51/300 (17%)
Query: 78 LPPDRSPTPRSRVSPGV--------TGLAVGPGNPKRCQRSGVP-YEGPGAPGGQQLRKS 128
+P R+ PR VS + A P P R QR +P P ++ S
Sbjct: 115 IPSSRAAAPRPPVSAASGRPQDDTDSSRASLPELP-RMQRPSLPDLSRPNTTSSTGMKHS 173
Query: 129 RARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKT 188
+ P PGR R A P L S PA + + PG+RL
Sbjct: 174 SSAPPPPPPGR---------RANAPPTPLPMHSSKAPAYNREKPLP-PTPGQRLH----- 218
Query: 189 PPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPP--GPPLRPARPHN 246
PGR GP A + ++R GP + PP PP PP P P +
Sbjct: 219 -PGREGPP----------APPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSS 267
Query: 247 PTSRGPGRLLTCEPP-SRKLPPPLPLCRSRWVLAPPPT-VRPRLRVLTPPFTLLCALPER 304
PT+ L RK P P+ R + PPPT P L PP P R
Sbjct: 268 PTNESAPELPQRHNSLHRKTPGPV-----RGLAPPPPTSASPSLLSNRPPPPARDP-PSR 321
Query: 305 GSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPP 364
G+ P + + P R HGS P S + P + P P PP
Sbjct: 322 GAAPPPPPPVI-----RNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPP 376
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 55.5 bits (132), Expect = 1e-07
Identities = 77/269 (28%), Positives = 100/269 (37%), Gaps = 63/269 (23%)
Query: 159 PTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPG-RSGPSGGVRSGAGHRAATAEHQLGAG 217
PT L P RA Q L+ P G S P GG A +A H+LG G
Sbjct: 14 PTGLRVPHRAPHILAQ-------LQPNETQPLGAHSTPYGGTLE-----AVSAFHRLGLG 61
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWV 277
+ G P P P P RP H S G PP+ +P P P
Sbjct: 62 LPIA---GRPKAGPSPSPAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAPTP------- 111
Query: 278 LAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTEL----TLTPSS 333
PR R P+ +L RG + +A+L+ R+ G + L PSS
Sbjct: 112 --------PRARNAETPWN-AASLLNRGCCWGA--AALLIGRLLGANQKRQRMPPLPPSS 160
Query: 334 RRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRL-------- 385
+A + + P+R RPP P+ P+P+ QG R+PR
Sbjct: 161 PKAR----MERASRKLPSRV------NSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGW 210
Query: 386 ---LRAALALGAPRGRTPSPGPGPAPALQ 411
R L PR R PGPGP PAL+
Sbjct: 211 LPPCRLRLQDSGPRRR---PGPGP-PALR 235
Score = 30.4 bits (67), Expect = 3.4
Identities = 47/186 (25%), Positives = 62/186 (33%), Gaps = 34/186 (18%)
Query: 76 GALPPDRSPTPRSRVSP-------------GVTGLAVGPGNPKRCQRSGVPYEGPGAPGG 122
G +P P R+ +P G L +G +R +P P +P
Sbjct: 104 GPVPAPTPPRARNAETPWNAASLLNRGCCWGAAALLIGRLLGANQKRQRMPPLPPSSPKA 163
Query: 123 QQLRKSRARLPR-----------TRP--------GREDAAVRGRNRDPAEPGSLRPTSLG 163
+ R SR +LP TRP GRE A G+ R P LR G
Sbjct: 164 RMERASR-KLPSRVNSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGWLPPCRLRLQDSG 222
Query: 164 FPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNG 223
R G G + R G P G +G +GG A R A A ++
Sbjct: 223 PRRRPGPGPPALRSGRSRGSGRPPDSAGAAG-TGGSGWAAALRGWPAPSSFAASSALPEE 281
Query: 224 PGPPAR 229
PP R
Sbjct: 282 CLPPRR 287
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 55.5 bits (132), Expect = 1e-07
Identities = 77/269 (28%), Positives = 100/269 (37%), Gaps = 63/269 (23%)
Query: 159 PTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPG-RSGPSGGVRSGAGHRAATAEHQLGAG 217
PT L P RA Q L+ P G S P GG A +A H+LG G
Sbjct: 14 PTGLRVPHRAPHILAQ-------LQPNETQPLGAHSTPYGGTLE-----AVSAFHRLGLG 61
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWV 277
+ G P P P P RP H S G PP+ +P P P
Sbjct: 62 LPIA---GRPKAGPSPSPAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAPTP------- 111
Query: 278 LAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTEL----TLTPSS 333
PR R P+ +L RG + +A+L+ R+ G + L PSS
Sbjct: 112 --------PRARNAETPWN-AASLLNRGCCWGA--AALLIGRLLGANQKRQRMPPLPPSS 160
Query: 334 RRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRL-------- 385
+A + + P+R RPP P+ P+P+ QG R+PR
Sbjct: 161 PKAR----MERASRKLPSRV------NSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGW 210
Query: 386 ---LRAALALGAPRGRTPSPGPGPAPALQ 411
R L PR R PGPGP PAL+
Sbjct: 211 LPPCRLRLQDSGPRRR---PGPGP-PALR 235
Score = 30.4 bits (67), Expect = 3.4
Identities = 47/186 (25%), Positives = 62/186 (33%), Gaps = 34/186 (18%)
Query: 76 GALPPDRSPTPRSRVSP-------------GVTGLAVGPGNPKRCQRSGVPYEGPGAPGG 122
G +P P R+ +P G L +G +R +P P +P
Sbjct: 104 GPVPAPTPPRARNAETPWNAASLLNRGCCWGAAALLIGRLLGANQKRQRMPPLPPSSPKA 163
Query: 123 QQLRKSRARLPR-----------TRP--------GREDAAVRGRNRDPAEPGSLRPTSLG 163
+ R SR +LP TRP GRE A G+ R P LR G
Sbjct: 164 RMERASR-KLPSRVNSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGWLPPCRLRLQDSG 222
Query: 164 FPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNG 223
R G G + R G P G +G +GG A R A A ++
Sbjct: 223 PRRRPGPGPPALRSGRSRGSGRPPDSAGAAG-TGGSGWAAALRGWPAPSSFAASSALPEE 281
Query: 224 PGPPAR 229
PP R
Sbjct: 282 CLPPRR 287
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 55.5 bits (132), Expect = 1e-07
Identities = 77/269 (28%), Positives = 100/269 (37%), Gaps = 63/269 (23%)
Query: 159 PTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPG-RSGPSGGVRSGAGHRAATAEHQLGAG 217
PT L P RA Q L+ P G S P GG A +A H+LG G
Sbjct: 14 PTGLRVPHRAPHILAQ-------LQPNETQPLGAHSTPYGGTLE-----AVSAFHRLGLG 61
Query: 218 FSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWV 277
+ G P P P P RP H S G PP+ +P P P
Sbjct: 62 LPIA---GRPKAGPSPSPAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAPTP------- 111
Query: 278 LAPPPTVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTEL----TLTPSS 333
PR R P+ +L RG + +A+L+ R+ G + L PSS
Sbjct: 112 --------PRARNAETPWN-AASLLNRGCCWGA--AALLIGRLLGANQKRQRMPPLPPSS 160
Query: 334 RRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRL-------- 385
+A + + P+R RPP P+ P+P+ QG R+PR
Sbjct: 161 PKAR----MERASRKLPSRV------NSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGW 210
Query: 386 ---LRAALALGAPRGRTPSPGPGPAPALQ 411
R L PR R PGPGP PAL+
Sbjct: 211 LPPCRLRLQDSGPRRR---PGPGP-PALR 235
Score = 30.4 bits (67), Expect = 3.4
Identities = 47/186 (25%), Positives = 62/186 (33%), Gaps = 34/186 (18%)
Query: 76 GALPPDRSPTPRSRVSP-------------GVTGLAVGPGNPKRCQRSGVPYEGPGAPGG 122
G +P P R+ +P G L +G +R +P P +P
Sbjct: 104 GPVPAPTPPRARNAETPWNAASLLNRGCCWGAAALLIGRLLGANQKRQRMPPLPPSSPKA 163
Query: 123 QQLRKSRARLPR-----------TRP--------GREDAAVRGRNRDPAEPGSLRPTSLG 163
+ R SR +LP TRP GRE A G+ R P LR G
Sbjct: 164 RMERASR-KLPSRVNSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGWLPPCRLRLQDSG 222
Query: 164 FPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNG 223
R G G + R G P G +G +GG A R A A ++
Sbjct: 223 PRRRPGPGPPALRSGRSRGSGRPPDSAGAAG-TGGSGWAAALRGWPAPSSFAASSALPEE 281
Query: 224 PGPPAR 229
PP R
Sbjct: 282 CLPPRR 287
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 55.5 bits (132), Expect = 1e-07
Identities = 60/213 (28%), Positives = 81/213 (38%), Gaps = 46/213 (21%)
Query: 82 RSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEG---------PGAPGGQQLRKSRARL 132
+ P+P+ P G PG P+ G P +G PG P G + ++R
Sbjct: 37 QGPSPQGGNKP--QGPPPPPGKPQ-----GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS 89
Query: 133 PRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGR 192
PR+ PG+ P G +P G P G+ Q G R +G P PPG+
Sbjct: 90 PRSPPGKPQG--------PPPQGGNQPQ--GPPPPPGKPQGPPPQGGNRPQGPP--PPGK 137
Query: 193 SGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA----PPGPPLRPARPHNPT 248
P G G R S R+ PG P PP P GPP P +P P
Sbjct: 138 --PQGPPPQGDKSR------------SPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 183
Query: 249 SRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPP 281
+G + PP + PP +SR +PP
Sbjct: 184 PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPP 216
Score = 51.6 bits (122), Expect = 1e-06
Identities = 53/203 (26%), Positives = 76/203 (37%), Gaps = 44/203 (21%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEG---------PGAPGGQQLRKSR 129
PP + P + G PG P+ G P +G PG P G + +
Sbjct: 93 PPGKPQGPPPQGGNQPQGPPPPPGKPQ-----GPPPQGGNRPQGPPPPGKPQGPPPQGDK 147
Query: 130 ARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP 189
+R PR+ PG+ P G +P G P G+ Q G++ +G P P
Sbjct: 148 SRSPRSPPGKPQG--------PPPQGGNQPQ--GPPPPPGKPQGPPPQGGKKPQGPP--P 195
Query: 190 PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA----PPGPPLRPARPH 245
PG+ P G G R++ ++ PG P PP P GPP P +P
Sbjct: 196 PGK--PQGPPPQGDKSRSS------------QSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 241
Query: 246 NPTSRGPGRLLTCEPPSRKLPPP 268
P +G + PP + PP
Sbjct: 242 GPPPQGGNKPQGPPPPGKPQGPP 264
Score = 47.0 bits (110), Expect = 3e-05
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 22/142 (15%)
Query: 144 VRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGA 203
+ G + P+ G +P G P G+ Q G + +G P PPG+ P G G
Sbjct: 32 IAGNPQGPSPQGGNKPQ--GPPPPPGKPQGPPPQGGNKPQGPP--PPGK--PQGPPPQGD 85
Query: 204 GHRAATAEHQLGAGFSVRNGPGPPARLPPA----PPGPPLRPARPHNPTSRGPGRLLTCE 259
R S R+ PG P PP P GPP P +P P +G R
Sbjct: 86 KSR------------SPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPP 133
Query: 260 PPSRKLPPPLPLCRSRWVLAPP 281
PP + PP +SR +PP
Sbjct: 134 PPGKPQGPPPQGDKSRSPRSPP 155
Score = 43.1 bits (100), Expect = 5e-04
Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 30/186 (16%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEG---------PGAPGGQQLRKSR 129
PP + P + G PG P+ G P +G PG P G + +
Sbjct: 154 PPGKPQGPPPQGGNQPQGPPPPPGKPQ-----GPPPQGGKKPQGPPPPGKPQGPPPQGDK 208
Query: 130 ARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP 189
+R ++ PG+ P P G P + G + QG P G+P+ P
Sbjct: 209 SRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN-KPQGPPPP----GKPQGP 263
Query: 190 PGRSGP-SGGVRSGAGHRAATAEHQLG--------AGFSVRNGPGPPARLPPAPPGPPL- 239
P + G S RS G + + AG + + PPA P PP PP
Sbjct: 264 PAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 323
Query: 240 -RPARP 244
RP+RP
Sbjct: 324 GRPSRP 329
Score = 35.8 bits (81), Expect = 0.081
Identities = 60/247 (24%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 171 GQVQGAAP--GRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPA 228
G QG +P G + +G P PPG+ P G G GP PP
Sbjct: 34 GNPQGPSPQGGNKPQGPPP-PPGK--PQGPPPQGGNKP---------------QGPPPPG 75
Query: 229 RLPPAPP------GPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPP 282
+ PP P P +P P +G + PP K P P +R PPP
Sbjct: 76 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNR-PQGPPP 134
Query: 283 TVRPRLRVLTPPFTLLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTP-SSRRAHGSHP 341
+P+ P +G ++ S RS G P + G P
Sbjct: 135 PGKPQ------------GPPPQGDKSRSPRSPP--------GKPQGPPPQGGNQPQGPPP 174
Query: 342 LSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPS 401
+ Q P + P PP P P P QG R + P+G
Sbjct: 175 PPGKPQGPPPQG--GKKPQGPPPPGKPQGPPP--QGDKSRSSQSPPGKPQGPPPQGGNQP 230
Query: 402 PGPGPAP 408
GP P P
Sbjct: 231 QGPPPPP 237
Score = 28.9 bits (63), Expect = 9.9
Identities = 42/173 (24%), Positives = 56/173 (32%), Gaps = 26/173 (15%)
Query: 237 PPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFT 296
P L P P+ +G + PP K P P ++ PPP +P+
Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKPQ--------- 78
Query: 297 LLCALPERGSRTPSTRSAVLVDRVAGLGTELTLTP-SSRRAHGSHPLSSERQAAPTRAFC 355
P +G ++ S RS G P + G P + Q P +
Sbjct: 79 ---GPPPQGDKSRSPRSPP--------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-- 125
Query: 356 SADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAP 408
P PP P P P QG R PR P+G GP P P
Sbjct: 126 GNRPQGPPPPGKPQGPPP--QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 176
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 55.1 bits (131), Expect = 1e-07
Identities = 67/220 (30%), Positives = 85/220 (38%), Gaps = 49/220 (22%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
P + S + PG+ G A GNP GVP G PG + L+ P PG
Sbjct: 944 PSEISHVIGDKGEPGLKGFA---GNPGEKGNRGVP----GMPGLKGLKGLPG--PAGPPG 994
Query: 139 -REDAAVRGRNRDPAE---PGSL----------RPTSLGFPARAGQGQVQGAAPGRRLRG 184
R D G +P PGS+ + +LGFP RAG+ + G + +G
Sbjct: 995 PRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG 1054
Query: 185 EPK----TPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA-PPGP 237
EP T PG GP+G G+ G + + PGPP L PA P G
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQ------------PGPPGHLGPAGPEGA 1102
Query: 238 PLRPARPHNPTSRGP-------GRLLTCEPPSRKLPPPLP 270
P P P P GP G PP + PP LP
Sbjct: 1103 PGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLP 1142
Score = 50.4 bits (119), Expect = 3e-06
Identities = 60/196 (30%), Positives = 74/196 (37%), Gaps = 30/196 (15%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLR--KSRARLPRTRPGRE-DAAVRG--- 146
G GL PG+P G P PGA G L+ K P + G D +RG
Sbjct: 505 GAAGLKGSPGSPGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG 563
Query: 147 RNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAG 204
R PG+ P G P G+ + G + G+P +P PG +GP+G G
Sbjct: 564 RKGLDGIPGT--PGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGP- 620
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAP--------PGPPLRPARPHNPTSRG----P 252
E L V PGPP P PGPP P P +P +G P
Sbjct: 621 ----QGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
Query: 253 GRLLTCEPPSRKLPPP 268
G L C P LP P
Sbjct: 677 GSLGKCGDPG--LPGP 690
Score = 43.5 bits (101), Expect = 4e-04
Identities = 52/183 (28%), Positives = 67/183 (36%), Gaps = 26/183 (14%)
Query: 79 PPDRSPTP-----RSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLP 133
PP S P + +PG GL PG + GVP G PG + ++ +R
Sbjct: 272 PPGPSGLPGESYGSEKGAPGDPGLQGKPG------KDGVP----GFPGSEGVKGNRGF-- 319
Query: 134 RTRPG-REDAAVRGRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAP-GRRLRGEPKTP 189
PG + ++G+ D PG PT + + +G P G R P P
Sbjct: 320 ---PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGP 376
Query: 190 PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTS 249
PG G G R G R A L R PG A P PG P P +P
Sbjct: 377 PGVPGSPGSSRPGL--RGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 250 RGP 252
GP
Sbjct: 435 PGP 437
Score = 40.8 bits (94), Expect = 0.003
Identities = 49/175 (28%), Positives = 59/175 (33%), Gaps = 30/175 (17%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE--GPGAPGGQQLRKSRARLPRT-RPGREDAAVRGRN 148
PG G GNP G+P G PG + R + R RPG + G
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP--GIHGLQ 1050
Query: 149 RDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG--GVRSGAGHR 206
D EPG T G P G + G + G+P PPG GP+G G G
Sbjct: 1051 GDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPG-PPGHLGPAGPEGAPGSPGSP 1109
Query: 207 AATAEHQLGAGFSVRNGPGPPARL----------PPAPPGPPLRPARPHNPTSRG 251
+ PGP L PP GPP P P +P G
Sbjct: 1110 GLPGK------------PGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG 1152
Score = 39.7 bits (91), Expect = 0.006
Identities = 59/217 (27%), Positives = 70/217 (32%), Gaps = 40/217 (18%)
Query: 53 GRNGENADTARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGV 112
GR G D T + F LP + PG TG PG+ G
Sbjct: 1204 GRKGAMGDAGPRGPTGIEGFPGPPGLP--------GAIIPGQTGNRGPPGSRGSPGAPGP 1255
Query: 113 PYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSL-RPTSLGFPARAGQG 171
P G PG + + PG + G D PG L P + G P G
Sbjct: 1256 P----GPPGSHVIGIKGDKGSMGHPGPKGPP--GTAGDMGPPGRLGAPGTPGLPGPRGDP 1309
Query: 172 QVQGAAPGRRLRGEPKT-----PPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGP 224
QG + +G P PPG GP G GVR G + + P
Sbjct: 1310 GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT------------LKIISLP 1357
Query: 225 GPPARLPPAPPGPPLRPARPHNPTSRG-PGRLLTCEP 260
G P PPG P P P G PG L C P
Sbjct: 1358 GSPG-----PPGTPGEPGMQGEPGPPGPPGNLGPCGP 1389
Score = 37.7 bits (86), Expect = 0.021
Identities = 54/196 (27%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPG--GQQLRKSRARLPRTR--PGREDAA-VRGR 147
G+ G + PG P +G PY G PG G + + LP T PG AA ++G+
Sbjct: 97 GLPGFSGSPGLPGTPGNTG-PYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 148 NRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRSGPSG--GVRSGA 203
PA+ + + G P G QG PG P PPG G G G R
Sbjct: 156 KGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPK 215
Query: 204 GHRAATA-EHQLGAGFSVRNGP-GPPARL------------------------PPAPPGP 237
GH H+ G GP GPP + P PPGP
Sbjct: 216 GHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGP 275
Query: 238 PLRPARPHNPTSRGPG 253
P + PG
Sbjct: 276 SGLPGESYGSEKGAPG 291
Score = 37.7 bits (86), Expect = 0.021
Identities = 60/202 (29%), Positives = 65/202 (32%), Gaps = 45/202 (22%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE----GPGAPGGQQLRKSRAR-----------LPRTR 136
PG G PG P G P GPG PG R + LP T
Sbjct: 723 PGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGT- 781
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQ--VQG--------AAPGRRLRGEP 186
PG E + G DP +PG P G P R +G QG GRR + P
Sbjct: 782 PGNE--GLDGPRGDPGQPGP--PGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGP 837
Query: 187 KTPPGRSGPSGGVRSGAGHRAATAEHQLGAG-FSVRNGPGPPARLPPAPP---------- 235
K PG G G HQ G R PG P L P
Sbjct: 838 KGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFP 897
Query: 236 ---GPPLRPARPHNPTSRG-PG 253
GPP P P P RG PG
Sbjct: 898 GAIGPPGPPGNPGTPGQRGSPG 919
Score = 37.4 bits (85), Expect = 0.028
Identities = 56/213 (26%), Positives = 76/213 (35%), Gaps = 32/213 (15%)
Query: 79 PPDRSPT--PRSRVSPGVTGLAVGPGN--PKRCQRSGVPYEGP-GAPG--GQQLRKSRAR 131
PP P P + + GV G PG P+ P GP G PG G +
Sbjct: 615 PPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG 674
Query: 132 LPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--------AAPGRR-- 181
+P + D + G + +P PG +GFP G QG PG+
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPG------IGFPGPPGPKGDQGFPGTKGSLGCPGKMGE 728
Query: 182 --LRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP----- 234
L G+P P + P+ + G G E PG P LP P
Sbjct: 729 PGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG-LPGTPGNEGL 787
Query: 235 PGPPLRPARPHNPTSRG-PGRLLTCEPPSRKLP 266
GP P +P P +G PGR + ++ LP
Sbjct: 788 DGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLP 820
Score = 36.2 bits (82), Expect = 0.062
Identities = 40/138 (28%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGA 176
PG PG P PG + +G DP G +P G P G V+G
Sbjct: 270 PGPPG-----------PSGLPGESYGSEKGAPGDPGLQG--KPGKDGVPGFPGSEGVKGN 316
Query: 177 APGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPA-RLPPAPP 235
L GE G G G + G R T + PGPP R P
Sbjct: 317 RGFPGLMGED----GIKGQKGDI-GPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQ 371
Query: 236 GPPLRPARPHNPTSRGPG 253
GP P P +P S PG
Sbjct: 372 GPSGPPGVPGSPGSSRPG 389
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 55.1 bits (131), Expect = 1e-07
Identities = 67/220 (30%), Positives = 85/220 (38%), Gaps = 49/220 (22%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
P + S + PG+ G A GNP GVP G PG + L+ P PG
Sbjct: 944 PSEISHVIGDKGEPGLKGFA---GNPGEKGNRGVP----GMPGLKGLKGLPG--PAGPPG 994
Query: 139 -REDAAVRGRNRDPAE---PGSL----------RPTSLGFPARAGQGQVQGAAPGRRLRG 184
R D G +P PGS+ + +LGFP RAG+ + G + +G
Sbjct: 995 PRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG 1054
Query: 185 EPK----TPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA-PPGP 237
EP T PG GP+G G+ G + + PGPP L PA P G
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQ------------PGPPGHLGPAGPEGA 1102
Query: 238 PLRPARPHNPTSRGP-------GRLLTCEPPSRKLPPPLP 270
P P P P GP G PP + PP LP
Sbjct: 1103 PGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLP 1142
Score = 50.4 bits (119), Expect = 3e-06
Identities = 60/196 (30%), Positives = 74/196 (37%), Gaps = 30/196 (15%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLR--KSRARLPRTRPGRE-DAAVRG--- 146
G GL PG+P G P PGA G L+ K P + G D +RG
Sbjct: 505 GAAGLKGSPGSPGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG 563
Query: 147 RNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAG 204
R PG+ P G P G+ + G + G+P +P PG +GP+G G
Sbjct: 564 RKGLDGIPGT--PGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGP- 620
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAP--------PGPPLRPARPHNPTSRG----P 252
E L V PGPP P PGPP P P +P +G P
Sbjct: 621 ----QGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
Query: 253 GRLLTCEPPSRKLPPP 268
G L C P LP P
Sbjct: 677 GSLGKCGDPG--LPGP 690
Score = 43.5 bits (101), Expect = 4e-04
Identities = 52/183 (28%), Positives = 67/183 (36%), Gaps = 26/183 (14%)
Query: 79 PPDRSPTP-----RSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLP 133
PP S P + +PG GL PG + GVP G PG + ++ +R
Sbjct: 272 PPGPSGLPGESYGSEKGAPGDPGLQGKPG------KDGVP----GFPGSEGVKGNRGF-- 319
Query: 134 RTRPG-REDAAVRGRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAP-GRRLRGEPKTP 189
PG + ++G+ D PG PT + + +G P G R P P
Sbjct: 320 ---PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGP 376
Query: 190 PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTS 249
PG G G R G R A L R PG A P PG P P +P
Sbjct: 377 PGVPGSPGSSRPGL--RGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 250 RGP 252
GP
Sbjct: 435 PGP 437
Score = 40.8 bits (94), Expect = 0.003
Identities = 49/175 (28%), Positives = 59/175 (33%), Gaps = 30/175 (17%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE--GPGAPGGQQLRKSRARLPRT-RPGREDAAVRGRN 148
PG G GNP G+P G PG + R + R RPG + G
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP--GIHGLQ 1050
Query: 149 RDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG--GVRSGAGHR 206
D EPG T G P G + G + G+P PPG GP+G G G
Sbjct: 1051 GDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPG-PPGHLGPAGPEGAPGSPGSP 1109
Query: 207 AATAEHQLGAGFSVRNGPGPPARL----------PPAPPGPPLRPARPHNPTSRG 251
+ PGP L PP GPP P P +P G
Sbjct: 1110 GLPGK------------PGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG 1152
Score = 39.7 bits (91), Expect = 0.006
Identities = 59/217 (27%), Positives = 70/217 (32%), Gaps = 40/217 (18%)
Query: 53 GRNGENADTARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGV 112
GR G D T + F LP + PG TG PG+ G
Sbjct: 1204 GRKGAMGDAGPRGPTGIEGFPGPPGLP--------GAIIPGQTGNRGPPGSRGSPGAPGP 1255
Query: 113 PYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSL-RPTSLGFPARAGQG 171
P G PG + + PG + G D PG L P + G P G
Sbjct: 1256 P----GPPGSHVIGIKGDKGSMGHPGPKGPP--GTAGDMGPPGRLGAPGTPGLPGPRGDP 1309
Query: 172 QVQGAAPGRRLRGEPKT-----PPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGP 224
QG + +G P PPG GP G GVR G + + P
Sbjct: 1310 GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT------------LKIISLP 1357
Query: 225 GPPARLPPAPPGPPLRPARPHNPTSRG-PGRLLTCEP 260
G P PPG P P P G PG L C P
Sbjct: 1358 GSPG-----PPGTPGEPGMQGEPGPPGPPGNLGPCGP 1389
Score = 37.7 bits (86), Expect = 0.021
Identities = 54/196 (27%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPG--GQQLRKSRARLPRTR--PGREDAA-VRGR 147
G+ G + PG P +G PY G PG G + + LP T PG AA ++G+
Sbjct: 97 GLPGFSGSPGLPGTPGNTG-PYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 148 NRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRSGPSG--GVRSGA 203
PA+ + + G P G QG PG P PPG G G G R
Sbjct: 156 KGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPK 215
Query: 204 GHRAATA-EHQLGAGFSVRNGP-GPPARL------------------------PPAPPGP 237
GH H+ G GP GPP + P PPGP
Sbjct: 216 GHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGP 275
Query: 238 PLRPARPHNPTSRGPG 253
P + PG
Sbjct: 276 SGLPGESYGSEKGAPG 291
Score = 37.7 bits (86), Expect = 0.021
Identities = 60/202 (29%), Positives = 65/202 (32%), Gaps = 45/202 (22%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE----GPGAPGGQQLRKSRAR-----------LPRTR 136
PG G PG P G P GPG PG R + LP T
Sbjct: 723 PGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGT- 781
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQ--VQG--------AAPGRRLRGEP 186
PG E + G DP +PG P G P R +G QG GRR + P
Sbjct: 782 PGNE--GLDGPRGDPGQPGP--PGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGP 837
Query: 187 KTPPGRSGPSGGVRSGAGHRAATAEHQLGAG-FSVRNGPGPPARLPPAPP---------- 235
K PG G G HQ G R PG P L P
Sbjct: 838 KGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFP 897
Query: 236 ---GPPLRPARPHNPTSRG-PG 253
GPP P P P RG PG
Sbjct: 898 GAIGPPGPPGNPGTPGQRGSPG 919
Score = 37.4 bits (85), Expect = 0.028
Identities = 56/213 (26%), Positives = 76/213 (35%), Gaps = 32/213 (15%)
Query: 79 PPDRSPT--PRSRVSPGVTGLAVGPGN--PKRCQRSGVPYEGP-GAPG--GQQLRKSRAR 131
PP P P + + GV G PG P+ P GP G PG G +
Sbjct: 615 PPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG 674
Query: 132 LPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--------AAPGRR-- 181
+P + D + G + +P PG +GFP G QG PG+
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPG------IGFPGPPGPKGDQGFPGTKGSLGCPGKMGE 728
Query: 182 --LRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP----- 234
L G+P P + P+ + G G E PG P LP P
Sbjct: 729 PGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG-LPGTPGNEGL 787
Query: 235 PGPPLRPARPHNPTSRG-PGRLLTCEPPSRKLP 266
GP P +P P +G PGR + ++ LP
Sbjct: 788 DGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLP 820
Score = 36.2 bits (82), Expect = 0.062
Identities = 40/138 (28%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGA 176
PG PG P PG + +G DP G +P G P G V+G
Sbjct: 270 PGPPG-----------PSGLPGESYGSEKGAPGDPGLQG--KPGKDGVPGFPGSEGVKGN 316
Query: 177 APGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPA-RLPPAPP 235
L GE G G G + G R T + PGPP R P
Sbjct: 317 RGFPGLMGED----GIKGQKGDI-GPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQ 371
Query: 236 GPPLRPARPHNPTSRGPG 253
GP P P +P S PG
Sbjct: 372 GPSGPPGVPGSPGSSRPG 389
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 55.1 bits (131), Expect = 1e-07
Identities = 67/220 (30%), Positives = 85/220 (38%), Gaps = 49/220 (22%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
P + S + PG+ G A GNP GVP G PG + L+ P PG
Sbjct: 944 PSEISHVIGDKGEPGLKGFA---GNPGEKGNRGVP----GMPGLKGLKGLPG--PAGPPG 994
Query: 139 -REDAAVRGRNRDPAE---PGSL----------RPTSLGFPARAGQGQVQGAAPGRRLRG 184
R D G +P PGS+ + +LGFP RAG+ + G + +G
Sbjct: 995 PRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG 1054
Query: 185 EPK----TPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA-PPGP 237
EP T PG GP+G G+ G + + PGPP L PA P G
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQ------------PGPPGHLGPAGPEGA 1102
Query: 238 PLRPARPHNPTSRGP-------GRLLTCEPPSRKLPPPLP 270
P P P P GP G PP + PP LP
Sbjct: 1103 PGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLP 1142
Score = 50.4 bits (119), Expect = 3e-06
Identities = 60/196 (30%), Positives = 74/196 (37%), Gaps = 30/196 (15%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLR--KSRARLPRTRPGRE-DAAVRG--- 146
G GL PG+P G P PGA G L+ K P + G D +RG
Sbjct: 505 GAAGLKGSPGSPGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG 563
Query: 147 RNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAG 204
R PG+ P G P G+ + G + G+P +P PG +GP+G G
Sbjct: 564 RKGLDGIPGT--PGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGP- 620
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAP--------PGPPLRPARPHNPTSRG----P 252
E L V PGPP P PGPP P P +P +G P
Sbjct: 621 ----QGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
Query: 253 GRLLTCEPPSRKLPPP 268
G L C P LP P
Sbjct: 677 GSLGKCGDPG--LPGP 690
Score = 43.5 bits (101), Expect = 4e-04
Identities = 52/183 (28%), Positives = 67/183 (36%), Gaps = 26/183 (14%)
Query: 79 PPDRSPTP-----RSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLP 133
PP S P + +PG GL PG + GVP G PG + ++ +R
Sbjct: 272 PPGPSGLPGESYGSEKGAPGDPGLQGKPG------KDGVP----GFPGSEGVKGNRGF-- 319
Query: 134 RTRPG-REDAAVRGRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAP-GRRLRGEPKTP 189
PG + ++G+ D PG PT + + +G P G R P P
Sbjct: 320 ---PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGP 376
Query: 190 PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTS 249
PG G G R G R A L R PG A P PG P P +P
Sbjct: 377 PGVPGSPGSSRPGL--RGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 250 RGP 252
GP
Sbjct: 435 PGP 437
Score = 40.8 bits (94), Expect = 0.003
Identities = 49/175 (28%), Positives = 59/175 (33%), Gaps = 30/175 (17%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE--GPGAPGGQQLRKSRARLPRT-RPGREDAAVRGRN 148
PG G GNP G+P G PG + R + R RPG + G
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP--GIHGLQ 1050
Query: 149 RDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG--GVRSGAGHR 206
D EPG T G P G + G + G+P PPG GP+G G G
Sbjct: 1051 GDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPG-PPGHLGPAGPEGAPGSPGSP 1109
Query: 207 AATAEHQLGAGFSVRNGPGPPARL----------PPAPPGPPLRPARPHNPTSRG 251
+ PGP L PP GPP P P +P G
Sbjct: 1110 GLPGK------------PGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG 1152
Score = 39.7 bits (91), Expect = 0.006
Identities = 59/217 (27%), Positives = 70/217 (32%), Gaps = 40/217 (18%)
Query: 53 GRNGENADTARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGV 112
GR G D T + F LP + PG TG PG+ G
Sbjct: 1204 GRKGAMGDAGPRGPTGIEGFPGPPGLP--------GAIIPGQTGNRGPPGSRGSPGAPGP 1255
Query: 113 PYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSL-RPTSLGFPARAGQG 171
P G PG + + PG + G D PG L P + G P G
Sbjct: 1256 P----GPPGSHVIGIKGDKGSMGHPGPKGPP--GTAGDMGPPGRLGAPGTPGLPGPRGDP 1309
Query: 172 QVQGAAPGRRLRGEPKT-----PPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGP 224
QG + +G P PPG GP G GVR G + + P
Sbjct: 1310 GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT------------LKIISLP 1357
Query: 225 GPPARLPPAPPGPPLRPARPHNPTSRG-PGRLLTCEP 260
G P PPG P P P G PG L C P
Sbjct: 1358 GSPG-----PPGTPGEPGMQGEPGPPGPPGNLGPCGP 1389
Score = 37.7 bits (86), Expect = 0.021
Identities = 54/196 (27%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPG--GQQLRKSRARLPRTR--PGREDAA-VRGR 147
G+ G + PG P +G PY G PG G + + LP T PG AA ++G+
Sbjct: 97 GLPGFSGSPGLPGTPGNTG-PYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 148 NRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRSGPSG--GVRSGA 203
PA+ + + G P G QG PG P PPG G G G R
Sbjct: 156 KGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPK 215
Query: 204 GHRAATA-EHQLGAGFSVRNGP-GPPARL------------------------PPAPPGP 237
GH H+ G GP GPP + P PPGP
Sbjct: 216 GHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGP 275
Query: 238 PLRPARPHNPTSRGPG 253
P + PG
Sbjct: 276 SGLPGESYGSEKGAPG 291
Score = 37.7 bits (86), Expect = 0.021
Identities = 60/202 (29%), Positives = 65/202 (32%), Gaps = 45/202 (22%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE----GPGAPGGQQLRKSRAR-----------LPRTR 136
PG G PG P G P GPG PG R + LP T
Sbjct: 723 PGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGT- 781
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQ--VQG--------AAPGRRLRGEP 186
PG E + G DP +PG P G P R +G QG GRR + P
Sbjct: 782 PGNE--GLDGPRGDPGQPGP--PGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGP 837
Query: 187 KTPPGRSGPSGGVRSGAGHRAATAEHQLGAG-FSVRNGPGPPARLPPAPP---------- 235
K PG G G HQ G R PG P L P
Sbjct: 838 KGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFP 897
Query: 236 ---GPPLRPARPHNPTSRG-PG 253
GPP P P P RG PG
Sbjct: 898 GAIGPPGPPGNPGTPGQRGSPG 919
Score = 37.4 bits (85), Expect = 0.028
Identities = 56/213 (26%), Positives = 76/213 (35%), Gaps = 32/213 (15%)
Query: 79 PPDRSPT--PRSRVSPGVTGLAVGPGN--PKRCQRSGVPYEGP-GAPG--GQQLRKSRAR 131
PP P P + + GV G PG P+ P GP G PG G +
Sbjct: 615 PPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG 674
Query: 132 LPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--------AAPGRR-- 181
+P + D + G + +P PG +GFP G QG PG+
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPG------IGFPGPPGPKGDQGFPGTKGSLGCPGKMGE 728
Query: 182 --LRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP----- 234
L G+P P + P+ + G G E PG P LP P
Sbjct: 729 PGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG-LPGTPGNEGL 787
Query: 235 PGPPLRPARPHNPTSRG-PGRLLTCEPPSRKLP 266
GP P +P P +G PGR + ++ LP
Sbjct: 788 DGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLP 820
Score = 36.2 bits (82), Expect = 0.062
Identities = 40/138 (28%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGA 176
PG PG P PG + +G DP G +P G P G V+G
Sbjct: 270 PGPPG-----------PSGLPGESYGSEKGAPGDPGLQG--KPGKDGVPGFPGSEGVKGN 316
Query: 177 APGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPA-RLPPAPP 235
L GE G G G + G R T + PGPP R P
Sbjct: 317 RGFPGLMGED----GIKGQKGDI-GPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQ 371
Query: 236 GPPLRPARPHNPTSRGPG 253
GP P P +P S PG
Sbjct: 372 GPSGPPGVPGSPGSSRPG 389
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 55.1 bits (131), Expect = 1e-07
Identities = 67/220 (30%), Positives = 85/220 (38%), Gaps = 49/220 (22%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
P + S + PG+ G A GNP GVP G PG + L+ P PG
Sbjct: 944 PSEISHVIGDKGEPGLKGFA---GNPGEKGNRGVP----GMPGLKGLKGLPG--PAGPPG 994
Query: 139 -REDAAVRGRNRDPAE---PGSL----------RPTSLGFPARAGQGQVQGAAPGRRLRG 184
R D G +P PGS+ + +LGFP RAG+ + G + +G
Sbjct: 995 PRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG 1054
Query: 185 EPK----TPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPA-PPGP 237
EP T PG GP+G G+ G + + PGPP L PA P G
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQ------------PGPPGHLGPAGPEGA 1102
Query: 238 PLRPARPHNPTSRGP-------GRLLTCEPPSRKLPPPLP 270
P P P P GP G PP + PP LP
Sbjct: 1103 PGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLP 1142
Score = 50.4 bits (119), Expect = 3e-06
Identities = 60/196 (30%), Positives = 74/196 (37%), Gaps = 30/196 (15%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLR--KSRARLPRTRPGRE-DAAVRG--- 146
G GL PG+P G P PGA G L+ K P + G D +RG
Sbjct: 505 GAAGLKGSPGSPGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG 563
Query: 147 RNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP--PGRSGPSGGVRSGAG 204
R PG+ P G P G+ + G + G+P +P PG +GP+G G
Sbjct: 564 RKGLDGIPGT--PGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGP- 620
Query: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAP--------PGPPLRPARPHNPTSRG----P 252
E L V PGPP P PGPP P P +P +G P
Sbjct: 621 ----QGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
Query: 253 GRLLTCEPPSRKLPPP 268
G L C P LP P
Sbjct: 677 GSLGKCGDPG--LPGP 690
Score = 43.5 bits (101), Expect = 4e-04
Identities = 52/183 (28%), Positives = 67/183 (36%), Gaps = 26/183 (14%)
Query: 79 PPDRSPTP-----RSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLP 133
PP S P + +PG GL PG + GVP G PG + ++ +R
Sbjct: 272 PPGPSGLPGESYGSEKGAPGDPGLQGKPG------KDGVP----GFPGSEGVKGNRGF-- 319
Query: 134 RTRPG-REDAAVRGRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAP-GRRLRGEPKTP 189
PG + ++G+ D PG PT + + +G P G R P P
Sbjct: 320 ---PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGP 376
Query: 190 PGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTS 249
PG G G R G R A L R PG A P PG P P +P
Sbjct: 377 PGVPGSPGSSRPGL--RGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 250 RGP 252
GP
Sbjct: 435 PGP 437
Score = 40.8 bits (94), Expect = 0.003
Identities = 49/175 (28%), Positives = 59/175 (33%), Gaps = 30/175 (17%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE--GPGAPGGQQLRKSRARLPRT-RPGREDAAVRGRN 148
PG G GNP G+P G PG + R + R RPG + G
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP--GIHGLQ 1050
Query: 149 RDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG--GVRSGAGHR 206
D EPG T G P G + G + G+P PPG GP+G G G
Sbjct: 1051 GDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPG-PPGHLGPAGPEGAPGSPGSP 1109
Query: 207 AATAEHQLGAGFSVRNGPGPPARL----------PPAPPGPPLRPARPHNPTSRG 251
+ PGP L PP GPP P P +P G
Sbjct: 1110 GLPGK------------PGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG 1152
Score = 39.7 bits (91), Expect = 0.006
Identities = 59/217 (27%), Positives = 70/217 (32%), Gaps = 40/217 (18%)
Query: 53 GRNGENADTARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGV 112
GR G D T + F LP + PG TG PG+ G
Sbjct: 1204 GRKGAMGDAGPRGPTGIEGFPGPPGLP--------GAIIPGQTGNRGPPGSRGSPGAPGP 1255
Query: 113 PYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSL-RPTSLGFPARAGQG 171
P G PG + + PG + G D PG L P + G P G
Sbjct: 1256 P----GPPGSHVIGIKGDKGSMGHPGPKGPP--GTAGDMGPPGRLGAPGTPGLPGPRGDP 1309
Query: 172 QVQGAAPGRRLRGEPKT-----PPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGP 224
QG + +G P PPG GP G GVR G + + P
Sbjct: 1310 GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT------------LKIISLP 1357
Query: 225 GPPARLPPAPPGPPLRPARPHNPTSRG-PGRLLTCEP 260
G P PPG P P P G PG L C P
Sbjct: 1358 GSPG-----PPGTPGEPGMQGEPGPPGPPGNLGPCGP 1389
Score = 37.7 bits (86), Expect = 0.021
Identities = 54/196 (27%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 93 GVTGLAVGPGNPKRCQRSGVPYEGPGAPG--GQQLRKSRARLPRTR--PGREDAA-VRGR 147
G+ G + PG P +G PY G PG G + + LP T PG AA ++G+
Sbjct: 97 GLPGFSGSPGLPGTPGNTG-PYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 148 NRDPAEPGSLRPTSLGFPARAGQGQVQG--AAPGRRLRGEPKTPPGRSGPSG--GVRSGA 203
PA+ + + G P G QG PG P PPG G G G R
Sbjct: 156 KGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPK 215
Query: 204 GHRAATA-EHQLGAGFSVRNGP-GPPARL------------------------PPAPPGP 237
GH H+ G GP GPP + P PPGP
Sbjct: 216 GHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGP 275
Query: 238 PLRPARPHNPTSRGPG 253
P + PG
Sbjct: 276 SGLPGESYGSEKGAPG 291
Score = 37.7 bits (86), Expect = 0.021
Identities = 60/202 (29%), Positives = 65/202 (32%), Gaps = 45/202 (22%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYE----GPGAPGGQQLRKSRAR-----------LPRTR 136
PG G PG P G P GPG PG R + LP T
Sbjct: 723 PGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGT- 781
Query: 137 PGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQ--VQG--------AAPGRRLRGEP 186
PG E + G DP +PG P G P R +G QG GRR + P
Sbjct: 782 PGNE--GLDGPRGDPGQPGP--PGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGP 837
Query: 187 KTPPGRSGPSGGVRSGAGHRAATAEHQLGAG-FSVRNGPGPPARLPPAPP---------- 235
K PG G G HQ G R PG P L P
Sbjct: 838 KGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFP 897
Query: 236 ---GPPLRPARPHNPTSRG-PG 253
GPP P P P RG PG
Sbjct: 898 GAIGPPGPPGNPGTPGQRGSPG 919
Score = 37.4 bits (85), Expect = 0.028
Identities = 56/213 (26%), Positives = 76/213 (35%), Gaps = 32/213 (15%)
Query: 79 PPDRSPT--PRSRVSPGVTGLAVGPGN--PKRCQRSGVPYEGP-GAPG--GQQLRKSRAR 131
PP P P + + GV G PG P+ P GP G PG G +
Sbjct: 615 PPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG 674
Query: 132 LPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQG--------AAPGRR-- 181
+P + D + G + +P PG +GFP G QG PG+
Sbjct: 675 IPGSLGKCGDPGLPGPDGEPGIPG------IGFPGPPGPKGDQGFPGTKGSLGCPGKMGE 728
Query: 182 --LRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP----- 234
L G+P P + P+ + G G E PG P LP P
Sbjct: 729 PGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG-LPGTPGNEGL 787
Query: 235 PGPPLRPARPHNPTSRG-PGRLLTCEPPSRKLP 266
GP P +P P +G PGR + ++ LP
Sbjct: 788 DGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLP 820
Score = 36.2 bits (82), Expect = 0.062
Identities = 40/138 (28%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 117 PGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGA 176
PG PG P PG + +G DP G +P G P G V+G
Sbjct: 270 PGPPG-----------PSGLPGESYGSEKGAPGDPGLQG--KPGKDGVPGFPGSEGVKGN 316
Query: 177 APGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPA-RLPPAPP 235
L GE G G G + G R T + PGPP R P
Sbjct: 317 RGFPGLMGED----GIKGQKGDI-GPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQ 371
Query: 236 GPPLRPARPHNPTSRGPG 253
GP P P +P S PG
Sbjct: 372 GPSGPPGVPGSPGSSRPG 389
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 55.1 bits (131), Expect = 1e-07
Identities = 61/205 (29%), Positives = 77/205 (37%), Gaps = 34/205 (16%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDP 151
PG+ GL G P GP P G Q + L PG G + DP
Sbjct: 724 PGMRGLPGAVGEP-----GAKGAMGPAGPDGHQGPRGEQGLTGM-PGIRGPP--GPSGDP 775
Query: 152 AEPGSLRPTS-LGFPARAGQGQVQG--AAPGRRLRGE---------PKTPPGRSGPSG-- 197
+PG P G P G+ ++G APG+ + E P PPG GP G
Sbjct: 776 GKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPP 835
Query: 198 GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPGRLLT 257
G AG ++ +++ PGPP P PPGP + P P RGP
Sbjct: 836 GAPGPAGPAGLPGHQEV---LNLQGPPGPPG--PRGPPGPSI----PGPPGPRGPPGEGL 886
Query: 258 CEPPSRKLPPPLPLCRSRWVLAPPP 282
PP PP L S L+ PP
Sbjct: 887 PGPPG---PPGSFLSNSETFLSGPP 908
Score = 51.2 bits (121), Expect = 2e-06
Identities = 58/185 (31%), Positives = 67/185 (36%), Gaps = 37/185 (20%)
Query: 79 PPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPG 138
PP S P PG+TG G P R G+ E PGAPG ++ S T PG
Sbjct: 768 PPGPSGDPGK---PGLTGPQGPQGLPGTPGRPGIKGE-PGAPG--KIVTSEGSSMLTVPG 821
Query: 139 REDAAVRGRNRDPAEPGSLRPTSL-GFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG 197
P PG++ P G P AG + G L+G P PPG GP G
Sbjct: 822 -----------PPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPG-PPGPRGPPG 869
Query: 198 -GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARL----------PPAPPGPPLRPARPHN 246
+ G R E G PGPP PP PPGPP
Sbjct: 870 PSIPGPPGPRGPPGEGLPGP-------PGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGP 922
Query: 247 PTSRG 251
P RG
Sbjct: 923 PGPRG 927
Score = 45.4 bits (106), Expect = 1e-04
Identities = 62/206 (30%), Positives = 79/206 (38%), Gaps = 27/206 (13%)
Query: 87 RSRVSP-GVTGLAVGPGNPKRCQRSGV----PYEGPGAPGGQQLR-KSRARLPRTRPGRE 140
R R P G G A PG+ ++ +R P+ PG PG + S + P+ PG
Sbjct: 623 RGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
Query: 141 D-AAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEP--KTPPGRSGPSG 197
+RG P G P +G P G QG R L GEP + PG G G
Sbjct: 683 GLQGLRGEVGLPGVKGDKGP--MGPPGPKGD---QGEKGPRGLTGEPGMRGLPGAVGEPG 737
Query: 198 -----GVRSGAGHRAATAEHQLGAGFSVRNGPGP---PARL----PPAPPGPPLRPARPH 245
G GH+ E L +R PGP P + P P G P P RP
Sbjct: 738 AKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPG 797
Query: 246 NPTSRG-PGRLLTCEPPSRKLPPPLP 270
G PG+++T E S P P
Sbjct: 798 IKGEPGAPGKIVTSEGSSMLTVPGPP 823
Score = 45.4 bits (106), Expect = 1e-04
Identities = 55/177 (31%), Positives = 64/177 (36%), Gaps = 31/177 (17%)
Query: 73 EVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARL 132
EVL P P PR P + G P P+ G+P GP P G L S L
Sbjct: 851 EVLNLQGPPGPPGPRGPPGPSIPG----PPGPRGPPGEGLP--GPPGPPGSFLSNSETFL 904
Query: 133 --PRTRPGREDAAVRGRNRDPAEPGSL-RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTP 189
P PG G D PG G P + G ++ G L+G P P
Sbjct: 905 SGPPGPPGPP-----GPKGDQGPPGPRGHQGEQGLPGFSTSGS---SSFGLNLQGPPG-P 955
Query: 190 PGRSGPSG-----GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRP 241
PG GP G GV G + +E G S GPP PPGPP P
Sbjct: 956 PGPQGPKGDKGDPGVPGALGIPSGPSE---GGSSSTMYVSGPPG-----PPGPPGPP 1004
Score = 40.4 bits (93), Expect = 0.003
Identities = 51/196 (26%), Positives = 62/196 (31%), Gaps = 48/196 (24%)
Query: 92 PGVTGLAVGPGNPKRCQRSGVPY-EGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRD 150
PGV G +VGP SG P +GP P G Q + LP + + G D
Sbjct: 658 PGVPG-SVGPKGS-----SGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGD 711
Query: 151 PAEPGSL----RPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSG--------G 198
E G P G P G+ +GA P P G GP G G
Sbjct: 712 QGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMG-------PAGPDGHQGPRGEQGLTGMPG 764
Query: 199 VRSGAGHRAATAEHQLGAGFSVRNGPGPPAR----------------------LPPAPPG 236
+R G + L + PG P R P PPG
Sbjct: 765 IRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPG 824
Query: 237 PPLRPARPHNPTSRGP 252
PP P P + GP
Sbjct: 825 PPGAMGPPGPPGAPGP 840
Score = 36.2 bits (82), Expect = 0.062
Identities = 41/154 (26%), Positives = 49/154 (31%), Gaps = 36/154 (23%)
Query: 145 RGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAP--------GRRLRGEPKTPPGRSGPS 196
+G P PG P LG P G +G+ G+R R P P G +GP
Sbjct: 581 KGDRGFPGTPGI--PGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPP 638
Query: 197 G----GVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPPGP--------------- 237
G G R AG + + G P P PPGP
Sbjct: 639 GSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPG--PQGPPGPVGLQGLRGEVGLPGV 696
Query: 238 -----PLRPARPHNPTSRGPGRLLTCEPPSRKLP 266
P+ P P R LT EP R LP
Sbjct: 697 KGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLP 730
Score = 33.1 bits (74), Expect = 0.52
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 161 SLGFPARAGQGQVQGAA--------PGRRLRG--EPKTPPGRSGPSGGVRSGAGHRAATA 210
S+G P G + G + G RG P PPG G G V S ++
Sbjct: 1144 SIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVEDLSS 1203
Query: 211 E-HQLGAGFSVRNGPGPPARLPPAPPGP 237
H G F PGPP PP PPGP
Sbjct: 1204 YLHTAGLSFI----PGPPG--PPGPPGP 1225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,361,369
Number of Sequences: 37866
Number of extensions: 1979435
Number of successful extensions: 24696
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 1806
Number of HSP's that attempted gapping in prelim test: 12824
Number of HSP's gapped (non-prelim): 8514
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.