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Search of human proteins with 239755976
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755976 PREDICTED: hypothetical protein [Homo sapiens]
(380 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755976 PREDICTED: hypothetical protein [Homo sapiens] 794 0.0
gi|239750499 PREDICTED: hypothetical protein XP_002347422 [Homo ... 157 1e-38
gi|239744796 PREDICTED: hypothetical protein XP_002343273 [Homo ... 157 1e-38
gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ... 31 1.6
gi|239754364 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ... 31 1.6
gi|239748911 PREDICTED: hypothetical protein XP_002346854 [Homo ... 31 1.6
gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ... 31 1.6
gi|239742935 PREDICTED: hypothetical protein XP_002342692 [Homo ... 31 1.6
gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens] 30 3.6
gi|39725944 MBD2 (methyl-CpG-binding protein)-interacting zinc f... 30 4.7
gi|39725948 MBD2 (methyl-CpG-binding protein)-interacting zinc f... 30 4.7
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 30 4.7
gi|77874206 poly(A) polymerase beta (testis specific) [Homo sapi... 30 4.7
gi|16306568 poly(A) polymerase gamma [Homo sapiens] 30 4.7
gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform... 29 8.0
gi|122937215 prospero homeobox 2 [Homo sapiens] 29 8.0
>gi|239755976 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 794 bits (2051), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL
Sbjct: 1 MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
Query: 61 NHAYDLSWGSFSPSLSLLRAGCKSKWSHGPFLPGELSCLFKDREFLPGFLGLRSCQRAES 120
NHAYDLSWGSFSPSLSLLRAGCKSKWSHGPFLPGELSCLFKDREFLPGFLGLRSCQRAES
Sbjct: 61 NHAYDLSWGSFSPSLSLLRAGCKSKWSHGPFLPGELSCLFKDREFLPGFLGLRSCQRAES 120
Query: 121 GRQGNMHWGACCLQPSVYEKSCQHVTEAVYQQDEEKSEHRDLPFTNGLENRKSNSSPLVL 180
GRQGNMHWGACCLQPSVYEKSCQHVTEAVYQQDEEKSEHRDLPFTNGLENRKSNSSPLVL
Sbjct: 121 GRQGNMHWGACCLQPSVYEKSCQHVTEAVYQQDEEKSEHRDLPFTNGLENRKSNSSPLVL 180
Query: 181 PYPLHGNFDTRLSFLLENPERPQGVTCVRQDLPFLVNTVFLLASSGWQWYCPTLLATPEV 240
PYPLHGNFDTRLSFLLENPERPQGVTCVRQDLPFLVNTVFLLASSGWQWYCPTLLATPEV
Sbjct: 181 PYPLHGNFDTRLSFLLENPERPQGVTCVRQDLPFLVNTVFLLASSGWQWYCPTLLATPEV 240
Query: 241 PSVTPNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGPGGCVEGLKTRQVGMSAEIPGHT 300
PSVTPNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGPGGCVEGLKTRQVGMSAEIPGHT
Sbjct: 241 PSVTPNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGPGGCVEGLKTRQVGMSAEIPGHT 300
Query: 301 GTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGEGRTRTRRPTCGLAAV 360
GTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGEGRTRTRRPTCGLAAV
Sbjct: 301 GTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGEGRTRTRRPTCGLAAV 360
Query: 361 LPAPATKTPCSAEPSRMEVG 380
LPAPATKTPCSAEPSRMEVG
Sbjct: 361 LPAPATKTPCSAEPSRMEVG 380
>gi|239750499 PREDICTED: hypothetical protein XP_002347422 [Homo
sapiens]
Length = 90
Score = 157 bits (398), Expect = 1e-38
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL
Sbjct: 1 MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
Query: 61 NHAYDLSWGSFSPSLSLLR 79
NHAYDLSWGSFSPSLSLLR
Sbjct: 61 NHAYDLSWGSFSPSLSLLR 79
>gi|239744796 PREDICTED: hypothetical protein XP_002343273 [Homo
sapiens]
Length = 90
Score = 157 bits (398), Expect = 1e-38
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL
Sbjct: 1 MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
Query: 61 NHAYDLSWGSFSPSLSLLR 79
NHAYDLSWGSFSPSLSLLR
Sbjct: 61 NHAYDLSWGSFSPSLSLLR 79
>gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
sapiens]
Length = 237
Score = 31.2 bits (69), Expect = 1.6
Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 42/129 (32%)
Query: 197 ENPERP----QGVTCVRQDLPFLVNTVFLLASSGWQWY--------CPTLLATPEVPSVT 244
E P RP +G DLP S W W+ CP+ L TP+ P+V
Sbjct: 84 EQPYRPGRWREGWRSCSGDLP-----------SAWNWFLLCLSACGCPSALVTPQAPAV- 131
Query: 245 PNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGP-----GGCVEGL---KTRQVGMSAEI 296
P+P +P+ P P P GGC + + + VG A
Sbjct: 132 PSPG--------YVPA--PSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATC 181
Query: 297 PGHTGTPAK 305
P + +P+K
Sbjct: 182 PADSSSPSK 190
>gi|239754364 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 31.2 bits (69), Expect = 1.6
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 6/142 (4%)
Query: 231 CPT-LLATPEVPSVTPNPAEGLHLLKKLMP--SLNPLMTEPKDSLVCAKGPGGCVEGLKT 287
CPT LL T S TP P H L P S P P + A G G
Sbjct: 15 CPTTLLRTRTTQSGTPTPGAASHTPGPLFPVLSTTPAAAGPGPTCGEAAAEVGADNGAHR 74
Query: 288 RQVGMSAEIPGHTGTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGEGR 347
+ G + ++G+ +++ L KG P G+W + R A ++G+ +
Sbjct: 75 LRFG---DAGLNSGSKSRVLFRRRLWKGEPLPPLPPRQGQWPGTARVRAGGAVAGRSTRQ 131
Query: 348 TRTRRPTCGLAAVLPAPATKTP 369
+R + A P A P
Sbjct: 132 SRQGGSSASSGAAPPREAPAAP 153
>gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo
sapiens]
Length = 237
Score = 31.2 bits (69), Expect = 1.6
Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 42/129 (32%)
Query: 197 ENPERP----QGVTCVRQDLPFLVNTVFLLASSGWQWY--------CPTLLATPEVPSVT 244
E P RP +G DLP S W W+ CP+ L TP+ P+V
Sbjct: 84 EQPYRPGRWREGWRSCSGDLP-----------SAWNWFLLCLSACGCPSALVTPQAPAV- 131
Query: 245 PNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGP-----GGCVEGL---KTRQVGMSAEI 296
P+P +P+ P P P GGC + + + VG A
Sbjct: 132 PSPG--------YVPA--PSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATC 181
Query: 297 PGHTGTPAK 305
P + +P+K
Sbjct: 182 PADSSSPSK 190
>gi|239748911 PREDICTED: hypothetical protein XP_002346854 [Homo
sapiens]
Length = 189
Score = 31.2 bits (69), Expect = 1.6
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 6/142 (4%)
Query: 231 CPT-LLATPEVPSVTPNPAEGLHLLKKLMP--SLNPLMTEPKDSLVCAKGPGGCVEGLKT 287
CPT LL T S TP P H L P S P P + A G G
Sbjct: 15 CPTTLLRTRTTQSGTPTPGAASHTPGPLFPVLSTTPAAAGPGPTCGEAAAEVGADNGAHR 74
Query: 288 RQVGMSAEIPGHTGTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGEGR 347
+ G + ++G+ +++ L KG P G+W + R A ++G+ +
Sbjct: 75 LRFG---DAGLNSGSKSRVLFRRRLWKGEPLPPLPPRQGQWPGTARVRAGGAVAGRSTRQ 131
Query: 348 TRTRRPTCGLAAVLPAPATKTP 369
+R + A P A P
Sbjct: 132 SRQGGSSASSGAAPPREAPAAP 153
>gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo
sapiens]
Length = 237
Score = 31.2 bits (69), Expect = 1.6
Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 42/129 (32%)
Query: 197 ENPERP----QGVTCVRQDLPFLVNTVFLLASSGWQWY--------CPTLLATPEVPSVT 244
E P RP +G DLP S W W+ CP+ L TP+ P+V
Sbjct: 84 EQPYRPGRWREGWRSCSGDLP-----------SAWNWFLLCLSACGCPSALVTPQAPAV- 131
Query: 245 PNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGP-----GGCVEGL---KTRQVGMSAEI 296
P+P +P+ P P P GGC + + + VG A
Sbjct: 132 PSPG--------YVPA--PSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATC 181
Query: 297 PGHTGTPAK 305
P + +P+K
Sbjct: 182 PADSSSPSK 190
>gi|239742935 PREDICTED: hypothetical protein XP_002342692 [Homo
sapiens]
Length = 189
Score = 31.2 bits (69), Expect = 1.6
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 6/142 (4%)
Query: 231 CPT-LLATPEVPSVTPNPAEGLHLLKKLMP--SLNPLMTEPKDSLVCAKGPGGCVEGLKT 287
CPT LL T S TP P H L P S P P + A G G
Sbjct: 15 CPTTLLRTRTTQSGTPTPGAASHTPGPLFPVLSTTPAAAGPGPTCGEAAAEVGADNGAHR 74
Query: 288 RQVGMSAEIPGHTGTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGEGR 347
+ G + ++G+ +++ L KG P G+W + R A ++G+ +
Sbjct: 75 LRFG---DAGLNSGSKSRVLFRRRLWKGEPLPPLPPRQGQWPGTARVRAGGAVAGRSTRQ 131
Query: 348 TRTRRPTCGLAAVLPAPATKTP 369
+R + A P A P
Sbjct: 132 SRQGGSSASSGAAPPREAPAAP 153
>gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 3.6
Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 230 YCP----TLLATPEVPSVTPNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGPGGCVEGL 285
+CP +L TP PS++P+P G+ + + P + +S + P +
Sbjct: 203 HCPLHPSSLPLTPPSPSLSPSPLHGIFQVIIIQPQVQTQPESTAESRPPTEEPSQGAQAT 262
Query: 286 KTRQVGMSAEIPGHTGTPAKLFLLCTLGKGTTSQPWWYGGGEWYRSDRNNATVLLSGKGE 345
K ++ + P P K+ + LG TT R R+ A SG E
Sbjct: 263 KKKK----EDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLE 318
Query: 346 -GRTRTRRPTCGLAAVLPAPATKTPC 370
R R L A A + PC
Sbjct: 319 TERKRLASNYLNNPLFLTARANEDPC 344
>gi|39725944 MBD2 (methyl-CpG-binding protein)-interacting zinc
finger protein [Homo sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 128 WGACCLQPSVYEKSCQHVTEAVYQQ-----DEEKSEHRDLP 163
WG+C S EK +HVT+ + Q +EE+ E D P
Sbjct: 19 WGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDP 59
>gi|39725948 MBD2 (methyl-CpG-binding protein)-interacting zinc
finger protein [Homo sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 128 WGACCLQPSVYEKSCQHVTEAVYQQ-----DEEKSEHRDLP 163
WG+C S EK +HVT+ + Q +EE+ E D P
Sbjct: 19 WGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDP 59
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 29.6 bits (65), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 220 FLLASSGWQWYCPTLLATPE-----VPSVTP--NPAEGLHLLKKLMPS 260
F L S W+W P LL PE +P P NP++ HL+ + P+
Sbjct: 272 FFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319
>gi|77874206 poly(A) polymerase beta (testis specific) [Homo
sapiens]
Length = 637
Score = 29.6 bits (65), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 220 FLLASSGWQWYCPTLLATPE-----VPSVTP--NPAEGLHLLKKLMPS 260
F L S W+W P LL PE +P P NP++ HL+ + P+
Sbjct: 273 FFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPA 320
>gi|16306568 poly(A) polymerase gamma [Homo sapiens]
Length = 736
Score = 29.6 bits (65), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 220 FLLASSGWQWYCPTLLATPE-----VPSVTP--NPAEGLHLLKKLMPS 260
F L S W+W P LL PE +P P NP++ HL+ + P+
Sbjct: 271 FFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPA 318
>gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform 1
[Homo sapiens]
Length = 1170
Score = 28.9 bits (63), Expect = 8.0
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 208 VRQDLPFLVNTVFLLASSGWQWYCPTLLATPEVPSVTPNPAEGLHLLKKLMPSLNPLMTE 267
+R LP +V+ + T A VP NP L L L + L+
Sbjct: 664 IRNQLPLVVDAIC------------TRGADMSVPDEKGNPPLWLALANNLEDIASTLVRH 711
Query: 268 PKDSLVCAKGPGGCVEGLKTRQVGMSAE 295
D+ GPGGC++ L R + + E
Sbjct: 712 GCDATCWGPGPGGCLQTLLHRAIDENNE 739
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 28.9 bits (63), Expect = 8.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 245 PNPAEGLHLLKKLMPSLNPLMTEPKDSLVCAKGPGGCVEG 284
P E LHLLK+ + L + + A+GPGGC G
Sbjct: 130 PRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTG 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,690,246
Number of Sequences: 37866
Number of extensions: 948480
Number of successful extensions: 2183
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2178
Number of HSP's gapped (non-prelim): 18
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.