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Search of human proteins with 239753867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 454 e-128
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 454 e-128
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 454 e-128
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 44 1e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 40 0.001
gi|239754297 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo ... 40 0.002
gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo ... 40 0.002
gi|126352608 elastin isoform e precursor [Homo sapiens] 39 0.003
gi|126352440 elastin isoform a precursor [Homo sapiens] 39 0.003
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 38 0.007
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 38 0.007
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 38 0.007
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 38 0.007
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.010
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.010
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 37 0.010
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ... 37 0.010
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 37 0.010
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ... 37 0.010
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 37 0.013
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 37 0.013
gi|126352700 elastin isoform b precursor [Homo sapiens] 36 0.022
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 36 0.022
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 36 0.022
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.022
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 36 0.022
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.022
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 454 bits (1167), Expect = e-128
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA
Sbjct: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
Query: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL
Sbjct: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL
Sbjct: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
Query: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS
Sbjct: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 454 bits (1167), Expect = e-128
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA
Sbjct: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
Query: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL
Sbjct: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL
Sbjct: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
Query: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS
Sbjct: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 454 bits (1167), Expect = e-128
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA
Sbjct: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
Query: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL
Sbjct: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL
Sbjct: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
Query: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS
Sbjct: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/189 (28%), Positives = 68/189 (35%), Gaps = 35/189 (18%)
Query: 4 SEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRL 63
++ G RGCG G P P G G R R G G R G GAAL +
Sbjct: 44 ADTGVRGCGARG---------PAPLLASAG--GGRARDG---TWGVRTKGSGAALPS--- 86
Query: 64 RPRRRWAPGAGPVAACRPRAAAAGG---PTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
RP R AP + P A GG P G+ RG+ V R R
Sbjct: 87 RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR------------ 134
Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
S S + K SR+ T R A T +GR+ + PG E + R R
Sbjct: 135 ---SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSS 191
Query: 181 AARLGSRPS 189
++ S S
Sbjct: 192 SSSSSSSSS 200
Score = 30.8 bits (68), Expect = 0.91
Identities = 48/145 (33%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 45 EAQGARWPGGGAALLAGRLRPRRRWAPGAGPVAACRPRAA----AAGGPTDGKGRGS--- 97
E G GGA GRL PR APGA + AC RAA AA T +G G+
Sbjct: 2 ERAGPAGEEGGAR--EGRLLPR---APGAWVLRACAERAALEVGAASADTGVRGCGARGP 56
Query: 98 --CQRVAGPLRWRNLLFLPRLAG---ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHART 152
AG R R+ + R G AL S S P P E R +
Sbjct: 57 APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA-RGGLSGP 115
Query: 153 QRGREVGSLPGVGEARTSRGAVRPR 177
Q GR G++ VG + SR R R
Sbjct: 116 QGGRARGAMAHVGSRKRSRSRSRSR 140
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 40.4 bits (93), Expect = 0.001
Identities = 49/163 (30%), Positives = 60/163 (36%), Gaps = 35/163 (21%)
Query: 4 SEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRL 63
++ G RGCG G P P G G R R G G R G GAAL +
Sbjct: 44 ADTGVRGCGARG---------PAPLLASAG--GGRARDG---TWGVRTKGSGAALPS--- 86
Query: 64 RPRRRWAPGAGPVAACRPRAAAAGG---PTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
RP R AP + P A GG P G+ RG+ V R R
Sbjct: 87 RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR------------ 134
Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPG 163
S S + K SR+ T R A T +GR+ + PG
Sbjct: 135 ---SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPG 174
Score = 30.8 bits (68), Expect = 0.91
Identities = 48/145 (33%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 45 EAQGARWPGGGAALLAGRLRPRRRWAPGAGPVAACRPRAA----AAGGPTDGKGRGS--- 97
E G GGA GRL PR APGA + AC RAA AA T +G G+
Sbjct: 2 ERAGPAGEEGGAR--EGRLLPR---APGAWVLRACAERAALEVGAASADTGVRGCGARGP 56
Query: 98 --CQRVAGPLRWRNLLFLPRLAG---ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHART 152
AG R R+ + R G AL S S P P E R +
Sbjct: 57 APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA-RGGLSGP 115
Query: 153 QRGREVGSLPGVGEARTSRGAVRPR 177
Q GR G++ VG + SR R R
Sbjct: 116 QGGRARGAMAHVGSRKRSRSRSRSR 140
>gi|239754297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 39.7 bits (91), Expect = 0.002
Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 11 CGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA 70
C GRTWA SPE G R R RWP G A L P
Sbjct: 49 CSAPAGRTWA--------SPETFSSGSRRAR--------RWPCGAPACTR-TLSPALAAR 91
Query: 71 P-GAGPVAACRPRAAAAGGPTDGKGRGSC--QRVAGPLR 106
P G GP A RPR P D + RG C QR+ PLR
Sbjct: 92 PAGRGPCAG-RPRRCGCRDPADSRARGCCQPQRLDVPLR 129
>gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo
sapiens]
Length = 175
Score = 39.7 bits (91), Expect = 0.002
Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 11 CGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA 70
C GRTWA SPE G R R RWP G A L P
Sbjct: 49 CSAPAGRTWA--------SPETFSSGSRRAR--------RWPCGAPACTR-TLSPALAAR 91
Query: 71 P-GAGPVAACRPRAAAAGGPTDGKGRGSC--QRVAGPLR 106
P G GP A RPR P D + RG C QR+ PLR
Sbjct: 92 PAGRGPCAG-RPRRCGCRDPADSRARGCCQPQRLDVPLR 129
>gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo
sapiens]
Length = 175
Score = 39.7 bits (91), Expect = 0.002
Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 11 CGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA 70
C GRTWA SPE G R R RWP G A L P
Sbjct: 49 CSAPAGRTWA--------SPETFSSGSRRAR--------RWPCGAPACTR-TLSPALAAR 91
Query: 71 P-GAGPVAACRPRAAAAGGPTDGKGRGSC--QRVAGPLR 106
P G GP A RPR P D + RG C QR+ PLR
Sbjct: 92 PAGRGPCAG-RPRRCGCRDPADSRARGCCQPQRLDVPLR 129
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 22/158 (13%)
Query: 52 PGGGAALLAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLL 111
PGG + G + P + PGAG A GG G G + V G L
Sbjct: 26 PGGVPGAIPGGV-PGGVFYPGAG--------LGALGGGALGPGGKPLKPVPGGLAG---- 72
Query: 112 FLPRLAGALLSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSR 171
AG L ++ PG P + + + G +G +PGVG S
Sbjct: 73 -----AGLGAGLGAFPAVTFPGALVPGGVADAA--AAYKAAKAGAGLGGVPGVGGLGVSA 125
Query: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209
GAV P+PG + G P L G G + PG R P
Sbjct: 126 GAVVPQPGAGVKPGKVPGVGLPGVYPGGVL--PGARFP 161
Score = 33.5 bits (75), Expect = 0.14
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 7 GWRGCGGLGGRTWATRPLPGP-----HSPEFGLPGWRVRRGRREAQGARWPGGG---AAL 58
G G GGLG A P PG P GLPG V G GAR+PG G
Sbjct: 114 GVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPG--VYPG-GVLPGARFPGVGVLPGVP 170
Query: 59 LAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDG 92
++P+ APG G A P GGP G
Sbjct: 171 TGAGVKPK---APGVGGAFAGIPGVGPFGGPQPG 201
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 22/158 (13%)
Query: 52 PGGGAALLAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLL 111
PGG + G + P + PGAG A GG G G + V G L
Sbjct: 26 PGGVPGAIPGGV-PGGVFYPGAG--------LGALGGGALGPGGKPLKPVPGGLAG---- 72
Query: 112 FLPRLAGALLSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSR 171
AG L ++ PG P + + + G +G +PGVG S
Sbjct: 73 -----AGLGAGLGAFPAVTFPGALVPGGVADAA--AAYKAAKAGAGLGGVPGVGGLGVSA 125
Query: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209
GAV P+PG + G P L G G + PG R P
Sbjct: 126 GAVVPQPGAGVKPGKVPGVGLPGVYPGGVL--PGARFP 161
Score = 33.5 bits (75), Expect = 0.14
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 7 GWRGCGGLGGRTWATRPLPGP-----HSPEFGLPGWRVRRGRREAQGARWPGGG---AAL 58
G G GGLG A P PG P GLPG V G GAR+PG G
Sbjct: 114 GVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPG--VYPG-GVLPGARFPGVGVLPGVP 170
Query: 59 LAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDG 92
++P+ APG G A P GGP G
Sbjct: 171 TGAGVKPK---APGVGGAFAGIPGVGPFGGPQPG 201
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 37.7 bits (86), Expect = 0.007
Identities = 58/201 (28%), Positives = 70/201 (34%), Gaps = 25/201 (12%)
Query: 7 GWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGAR--WPGGGAALLAGRLR 64
G + CGG + RPL + G GR G R PGGG + AG R
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGG--------GRASHSGPRAGTPGGGRSSRAGARR 180
Query: 65 PRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPR--LAGALLS 122
P++ C P G +G GS +G L+ AGA
Sbjct: 181 KT--------PLSLC-PLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQ 231
Query: 123 LSVSLTLSLPGWKFP----LTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRP 178
+ S + PG P L T R H QR R ART R RP
Sbjct: 232 VRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARP 291
Query: 179 GLAARLGSRPSGPLRGAGRGA 199
G A GS P LRG G G+
Sbjct: 292 GKPAPRGSAPPARLRGGGGGS 312
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 37.7 bits (86), Expect = 0.007
Identities = 59/205 (28%), Positives = 72/205 (35%), Gaps = 36/205 (17%)
Query: 16 GRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWAPGAGP 75
G P P SP LPG Q A P G R RP W+P A
Sbjct: 707 GEAERRHPPPCHKSPALKLPGMTTGA---TTQTATLPDGQT----DRARP---WSPPAPG 756
Query: 76 VAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTLSLPGWK 135
+ R R A GP G G +R R R+ R LT S G +
Sbjct: 757 ESRDRARGAGQPGPGSGSG---AERAGPERRARDTQTRTR--------RDKLTDSARGGR 805
Query: 136 FPLTS----REHTDRRTHARTQRG--REVGSLPGVGEARTSRGAVRPRPGLAARLGSRPS 189
LT+ R + RR T +G R S GE+R RP P +A + PS
Sbjct: 806 ARLTAGRRVRRESGRRRAGATSQGAIRRAASRARKGESR------RPLPANSAGRPALPS 859
Query: 190 GPLRGAGRGA---RVRRPGRRGPCG 211
+ RG+ R RP R P G
Sbjct: 860 PAAARSARGSWGLRASRPSRAAPRG 884
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 37.7 bits (86), Expect = 0.007
Identities = 54/194 (27%), Positives = 67/194 (34%), Gaps = 8/194 (4%)
Query: 17 RTWATRPLPGPHSPEFGLPGWRV---RRGRREAQGARWPGGGAALLAGRLRPRRRWAPGA 73
R A +P GPH+P P R A A P +L A PR W P A
Sbjct: 9 RRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEA 68
Query: 74 GPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTLSLPG 133
C+ + G + +GR S ++ GP PR A L L SLP
Sbjct: 69 MGTGGCQGKVKFFLGIRE-RGRSS-RKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPF 126
Query: 134 WKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLR 193
F S A + R PG G +R A +PGL+A G
Sbjct: 127 TPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDP---N 183
Query: 194 GAGRGARVRRPGRR 207
G R RPG R
Sbjct: 184 AVAAGPRPGRPGLR 197
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 37.7 bits (86), Expect = 0.007
Identities = 35/96 (36%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 10 GCGGLGGRTWATRPLPGPHS-PEFGLPGWRVRRGRREAQGARWPGGGA-ALLAGRLRPRR 67
GCG G RP PG + P G RRG+ G+ P GA L G PRR
Sbjct: 26 GCGSPGRGRRGPRPGPGDEAAPALG------RRGK----GSGGPEAGADGLSRGERGPRR 75
Query: 68 RWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
P A PRA+ AG +DG G G R +G
Sbjct: 76 AAVPELSAQPAGSPRASLAG--SDGGGGGGSARSSG 109
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/101 (34%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 3 KSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGR 62
K E G G G G PGP P GLPG R R G A GAR G G
Sbjct: 299 KGEAGAPGVKGESGSP-GENGSPGPMGPR-GLPGERGRTGPAGAAGARGNDG----QPGP 352
Query: 63 LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
P P GP P A GPT +G Q G
Sbjct: 353 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRG 393
Score = 33.5 bits (75), Expect = 0.14
Identities = 71/228 (31%), Positives = 79/228 (34%), Gaps = 49/228 (21%)
Query: 7 GWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPR 66
G RG G G T A P PGP P G R QGA P G L P
Sbjct: 627 GLRGLPGKDGETGAAGP-PGPAGPA----------GERGEQGAPGPSGFQGLPGPPGPPG 675
Query: 67 RRWAPGAGPVAACRPRAAAAG--GPTDGKG----RGS--CQRVAGPLRWRNLLFLPRLAG 118
PG V A A G GP +G RGS Q + GP LP G
Sbjct: 676 EGGKPGDQGVPG---EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG------LPGTPG 726
Query: 119 ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHA-----RTQRGREVGS-----LPGVGEAR 168
S PG + P + R A + RG +VG PG R
Sbjct: 727 TDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG-DVGEKGPEGAPGKDGGR 785
Query: 169 TSRGAVRPRPGLAARLGSR----PSGPLRGAG-RGARVRRPGRRGPCG 211
G + P PG A G + P GP AG RGA PG RG G
Sbjct: 786 GLTGPIGP-PGPAGANGEKGEVGPPGPAGSAGARGA----PGERGETG 828
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/101 (34%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 3 KSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGR 62
K E G G G G PGP P GLPG R R G A GAR G G
Sbjct: 230 KGEAGAPGVKGESGSP-GENGSPGPMGPR-GLPGERGRTGPAGAAGARGNDG----QPGP 283
Query: 63 LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
P P GP P A GPT +G Q G
Sbjct: 284 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRG 324
Score = 33.5 bits (75), Expect = 0.14
Identities = 71/228 (31%), Positives = 79/228 (34%), Gaps = 49/228 (21%)
Query: 7 GWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPR 66
G RG G G T A P PGP P G R QGA P G L P
Sbjct: 558 GLRGLPGKDGETGAAGP-PGPAGPA----------GERGEQGAPGPSGFQGLPGPPGPPG 606
Query: 67 RRWAPGAGPVAACRPRAAAAG--GPTDGKG----RGS--CQRVAGPLRWRNLLFLPRLAG 118
PG V A A G GP +G RGS Q + GP LP G
Sbjct: 607 EGGKPGDQGVPG---EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG------LPGTPG 657
Query: 119 ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHA-----RTQRGREVGS-----LPGVGEAR 168
S PG + P + R A + RG +VG PG R
Sbjct: 658 TDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG-DVGEKGPEGAPGKDGGR 716
Query: 169 TSRGAVRPRPGLAARLGSR----PSGPLRGAG-RGARVRRPGRRGPCG 211
G + P PG A G + P GP AG RGA PG RG G
Sbjct: 717 GLTGPIGP-PGPAGANGEKGEVGPPGPAGSAGARGA----PGERGETG 759
>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 37.4 bits (85), Expect = 0.010
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
Query: 89 PTDGKG 94
DG+G
Sbjct: 83 SRDGEG 88
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 2 RKSEWGWRGCG--GLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALL 59
R+ G RG G G G R A LP P P F R GR E G G A +
Sbjct: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPP--PPF-------RTGRGEGGGG---GSRADVT 371
Query: 60 AGRLRP-RRRWAPGAGPVAACRPRAAA 85
AGR RP RRRW P + RP A A
Sbjct: 372 AGRARPRRRRWEPLRAQRSGARPGAPA 398
>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
sapiens]
Length = 95
Score = 37.4 bits (85), Expect = 0.010
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
Query: 89 PTDGKG 94
DG+G
Sbjct: 83 SRDGEG 88
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 2 RKSEWGWRGCG--GLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALL 59
R+ G RG G G G R A LP P P F R GR E G G A +
Sbjct: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPP--PPF-------RTGRGEGGGG---GSRADVT 371
Query: 60 AGRLRP-RRRWAPGAGPVAACRPRAAA 85
AGR RP RRRW P + RP A A
Sbjct: 372 AGRARPRRRRWEPLRAQRSGARPGAPA 398
>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
sapiens]
Length = 95
Score = 37.4 bits (85), Expect = 0.010
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
Query: 89 PTDGKG 94
DG+G
Sbjct: 83 SRDGEG 88
>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 37.4 bits (85), Expect = 0.010
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
Query: 89 PTDGKG 94
DG+G
Sbjct: 83 SRDGEG 88
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 37.0 bits (84), Expect = 0.013
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 155 GREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPG--RRGPCGA 212
G +PG+ R +R PRP AR+ PS P G G R+ RPG R CGA
Sbjct: 476 GAPATCVPGLSPVRAARPG--PRPWGLARVARTPSAPRAGGGSWGRLHRPGGQTRVRCGA 533
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 37.0 bits (84), Expect = 0.013
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 155 GREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPG--RRGPCGA 212
G +PG+ R +R PRP AR+ PS P G G R+ RPG R CGA
Sbjct: 476 GAPATCVPGLSPVRAARPG--PRPWGLARVARTPSAPRAGGGSWGRLHRPGGQTRVRCGA 533
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 36.2 bits (82), Expect = 0.022
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 155 GREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209
G +G +PGVG S GAV P+PG + G P L G G + PG R P
Sbjct: 99 GAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVL--PGARFP 151
Score = 33.5 bits (75), Expect = 0.14
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 7 GWRGCGGLGGRTWATRPLPGP-----HSPEFGLPGWRVRRGRREAQGARWPGGG---AAL 58
G G GGLG A P PG P GLPG V G GAR+PG G
Sbjct: 104 GVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPG--VYPG-GVLPGARFPGVGVLPGVP 160
Query: 59 LAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDG 92
++P+ APG G A P GGP G
Sbjct: 161 TGAGVKPK---APGVGGAFAGIPGVGPFGGPQPG 191
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 36.2 bits (82), Expect = 0.022
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 151 RTQRGREVGSLPGVGEARTSRGAVRPRP-GLAARLGSRPSGPLRGAGRGARVRR-----P 204
RT+ GRE ++ G G++RP G AR G G ++GA G R+R P
Sbjct: 134 RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQ---GQVQGAAPGRRLRGEPKTPP 190
Query: 205 GRRGPCGALAS 215
GR GP G + S
Sbjct: 191 GRSGPSGGVRS 201
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 36.2 bits (82), Expect = 0.022
Identities = 64/227 (28%), Positives = 76/227 (33%), Gaps = 58/227 (25%)
Query: 35 PGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA----------------------PG 72
P R RG R G GGG A + R R WA PG
Sbjct: 30 PAARSPRGPRAGGGGGDAGGGGAPVR-RARGGGCWARAYQDARCFGRGEGGDLQVSSGPG 88
Query: 73 AGPVAACRPRAAAAGGPTD-GKGRGSCQRVAGP-----------LRWRNLLFLPRLAGAL 120
A P A R A +A G D G G R+ P LR R+ LP A L
Sbjct: 89 AAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALP--APRL 146
Query: 121 LSLSVSLTLSLPGWKFP----------------LTSREHTDR-RTHARTQRGREVG---- 159
S S PG + P L +R+ R+ + GR+
Sbjct: 147 CPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACA 206
Query: 160 SLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGR 206
LP +R +R R G R RP GP R RGAR RP R
Sbjct: 207 QLPRRPRGAGARRGMRRRLGAGERPAPRPRGPPRAPARGARWLRPRR 253
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.022
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 12 GGLGGR----------TWATRPLPGPHSPEFGLPGWRVR---RGRREAQG------ARWP 52
G GGR T A P PGP +P P + R RGR E++G A P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247
Query: 53 GGGAALLAGRLRPRRRWAPGAGPVAACRPR------AAAAGGPTDGKGRGSCQR 100
G A P R G A RPR A +G T G RG C R
Sbjct: 248 LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDR 301
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 36.2 bits (82), Expect = 0.022
Identities = 64/227 (28%), Positives = 76/227 (33%), Gaps = 58/227 (25%)
Query: 35 PGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA----------------------PG 72
P R RG R G GGG A + R R WA PG
Sbjct: 30 PAARSPRGPRAGGGGGDAGGGGAPVR-RARGGGCWARAYQDARCFGRGEGGDLQVSSGPG 88
Query: 73 AGPVAACRPRAAAAGGPTD-GKGRGSCQRVAGP-----------LRWRNLLFLPRLAGAL 120
A P A R A +A G D G G R+ P LR R+ LP A L
Sbjct: 89 AAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALP--APRL 146
Query: 121 LSLSVSLTLSLPGWKFP----------------LTSREHTDR-RTHARTQRGREVG---- 159
S S PG + P L +R+ R+ + GR+
Sbjct: 147 CPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACA 206
Query: 160 SLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGR 206
LP +R +R R G R RP GP R RGAR RP R
Sbjct: 207 QLPRRPRGAGARRGMRRRLGAGERPAPRPRGPPRAPARGARWLRPRR 253
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.022
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 12 GGLGGR----------TWATRPLPGPHSPEFGLPGWRVR---RGRREAQG------ARWP 52
G GGR T A P PGP +P P + R RGR E++G A P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247
Query: 53 GGGAALLAGRLRPRRRWAPGAGPVAACRPR------AAAAGGPTDGKGRGSCQR 100
G A P R G A RPR A +G T G RG C R
Sbjct: 248 LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDR 301
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,087,826
Number of Sequences: 37866
Number of extensions: 663707
Number of successful extensions: 4177
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 3528
Number of HSP's gapped (non-prelim): 955
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.