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Search of human proteins with 239751925
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751925 PREDICTED: similar to signal-regulatory protein
alpha [Homo sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751925 PREDICTED: similar to signal-regulatory protein alp... 177 2e-45
gi|209529703 signal-regulatory protein beta 1 isoform 3 precurso... 177 2e-45
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso... 127 2e-30
gi|18426911 signal-regulatory protein alpha precursor [Homo sapi... 104 2e-23
gi|91105767 signal-regulatory protein alpha precursor [Homo sapi... 104 2e-23
gi|91105764 signal-regulatory protein alpha precursor [Homo sapi... 104 2e-23
gi|94538335 signal-regulatory protein gamma isoform 1 precursor ... 91 3e-19
gi|144953878 signal-regulatory protein beta 1 isoform 2 precurso... 57 3e-09
gi|27734915 hypothetical protein LOC170393 [Homo sapiens] 36 0.006
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 35 0.013
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 35 0.013
gi|239746419 PREDICTED: hypothetical protein XP_002344218 [Homo ... 35 0.013
gi|94538339 signal-regulatory protein gamma isoform 3 precursor ... 31 0.18
gi|94538337 signal-regulatory protein gamma isoform 2 precursor ... 31 0.24
gi|91208420 bassoon protein [Homo sapiens] 28 1.2
gi|154800453 tastin isoform 1 [Homo sapiens] 28 1.2
gi|91982767 semaphorin 5B isoform 1 [Homo sapiens] 28 1.6
gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [H... 27 3.5
gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [H... 27 3.5
gi|23510323 nephroretinin [Homo sapiens] 27 4.5
gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens] 27 4.5
gi|7662486 ring finger protein 44 [Homo sapiens] 27 4.5
gi|169194706 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor... 26 7.7
gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor... 26 7.7
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 26 7.7
gi|66348148 zona pellucida glycoprotein 1 [Homo sapiens] 26 7.7
gi|142976733 surface glycoprotein, Ig superfamily member [Homo s... 26 7.7
>gi|239751925 PREDICTED: similar to signal-regulatory protein
alpha [Homo sapiens]
Length = 87
Score = 177 bits (448), Expect = 2e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL 60
MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL
Sbjct: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL 60
Query: 61 LIAFLLGPKVLLVVGVSVIYVYWKQKA 87
LIAFLLGPKVLLVVGVSVIYVYWKQKA
Sbjct: 61 LIAFLLGPKVLLVVGVSVIYVYWKQKA 87
>gi|209529703 signal-regulatory protein beta 1 isoform 3 precursor
[Homo sapiens]
Length = 398
Score = 177 bits (448), Expect = 2e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL 60
MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL
Sbjct: 312 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL 371
Query: 61 LIAFLLGPKVLLVVGVSVIYVYWKQKA 87
LIAFLLGPKVLLVVGVSVIYVYWKQKA
Sbjct: 372 LIAFLLGPKVLLVVGVSVIYVYWKQKA 398
>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
[Homo sapiens]
Length = 398
Score = 127 bits (319), Expect = 2e-30
Identities = 63/87 (72%), Positives = 70/87 (80%)
Query: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPL 60
MSWLLVN AHRDDV LTCQVEHDGQ AVSKS+ L++SAH KE GS+ ALA APL
Sbjct: 312 MSWLLVNTCAHRDDVVLTCQVEHDGQQAVSKSYALEISAHQKEHGSDITHEAALAPTAPL 371
Query: 61 LIAFLLGPKVLLVVGVSVIYVYWKQKA 87
L+A LLGPK+LLVVGVS IY+ WKQKA
Sbjct: 372 LVALLLGPKLLLVVGVSAIYICWKQKA 398
>gi|18426911 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 104 bits (259), Expect = 2e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 49
MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA
Sbjct: 313 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 361
>gi|91105767 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 104 bits (259), Expect = 2e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 49
MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA
Sbjct: 313 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 361
>gi|91105764 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 104 bits (259), Expect = 2e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 49
MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA
Sbjct: 313 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 361
>gi|94538335 signal-regulatory protein gamma isoform 1 precursor
[Homo sapiens]
Length = 387
Score = 90.5 bits (223), Expect = 3e-19
Identities = 49/85 (57%), Positives = 56/85 (65%), Gaps = 10/85 (11%)
Query: 2 SWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPLL 61
SW LVN+S RDDV LTCQV+HDGQ AVSK L+V+ H K+Q S+ PGPA + A LL
Sbjct: 312 SWFLVNISDQRDDVVLTCQVKHDGQLAVSKRLALEVTVHQKDQSSDATPGPASSLTALLL 371
Query: 62 IAFLLGPKVLLVVGVSVIYVYWKQK 86
IA LLGP IYV WKQK
Sbjct: 372 IAVLLGP----------IYVPWKQK 386
>gi|144953878 signal-regulatory protein beta 1 isoform 2 precursor
[Homo sapiens]
Length = 181
Score = 57.0 bits (136), Expect = 3e-09
Identities = 27/35 (77%), Positives = 30/35 (85%)
Query: 53 ALASAAPLLIAFLLGPKVLLVVGVSVIYVYWKQKA 87
ALA APLL+A LLGPK+LLVVGVS IY+ WKQKA
Sbjct: 147 ALAPTAPLLVALLLGPKLLLVVGVSAIYICWKQKA 181
>gi|27734915 hypothetical protein LOC170393 [Homo sapiens]
Length = 145
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 2 SWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT-----APGPALAS 56
+W+L + + + T + H GQP +++ L+ HP S + GP LA
Sbjct: 48 TWVLSFLFTEKPQTRSTSPISHQGQPQTTRALSLRQPQHPSAPASGRPRPPHSSGPDLAE 107
Query: 57 AAPLL 61
AAP++
Sbjct: 108 AAPVV 112
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 4 LLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHP--KEQGSNTAPG 51
LLVN S + LTC +EH+GQP + L +AH K GS A G
Sbjct: 371 LLVNASVQGPERVLTCMMEHEGQPPKRANLVLSTAAHTAYKPIGSTGAAG 420
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 65 LLGPKVLLVVGVSVIYVYWKQKA 87
LLG KVLL+V VS YV+ KQKA
Sbjct: 629 LLGSKVLLLVDVSAAYVHRKQKA 651
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 4 LLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHP--KEQGSNTAPG 51
LLVN S + LTC +EH+GQP + L +AH K GS A G
Sbjct: 371 LLVNASVQGPERVLTCMMEHEGQPPKRANLVLSTAAHTAYKPIGSTGAAG 420
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 65 LLGPKVLLVVGVSVIYVYWKQKA 87
LLG KVLL+V VS YV+ KQKA
Sbjct: 629 LLGSKVLLLVDVSAAYVHRKQKA 651
>gi|239746419 PREDICTED: hypothetical protein XP_002344218 [Homo
sapiens]
Length = 532
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 4 LLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHP--KEQGSNTAPG 51
LLVN S + LTC +EH+GQP + L +AH K GS A G
Sbjct: 371 LLVNASVQGPERVLTCMMEHEGQPPKRANLVLSTAAHTAYKPIGSTGAAG 420
>gi|94538339 signal-regulatory protein gamma isoform 3 precursor
[Homo sapiens]
Length = 276
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
Query: 46 SNTAPGPALASAAPLLIAFLLGPKVLLVVGVSVIYVYWKQK 86
S GPA + A LLIA LLGP IYV WKQK
Sbjct: 245 SEAIRGPASSLTALLLIAVLLGP----------IYVPWKQK 275
>gi|94538337 signal-regulatory protein gamma isoform 2 precursor
[Homo sapiens]
Length = 170
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 51 GPALASAAPLLIAFLLGPKVLLVVGVSVIYVYWKQK 86
GPA + A LLIA LLGP IYV WKQK
Sbjct: 144 GPASSLTALLLIAVLLGP----------IYVPWKQK 169
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 20 QVEHDGQPAVSKS------HDLKVSAHPKEQGSNTAPGPA 53
+ + GQPA SK +D A PK GS PGPA
Sbjct: 370 EADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPA 409
>gi|154800453 tastin isoform 1 [Homo sapiens]
Length = 778
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 41 PKEQGSNTAPGPALASAAPLLIAFLLGPKVLLVV 74
P +G N PGP + AP I F+ P L +
Sbjct: 97 PSPRGQNVGPGPPAQTEAPGTIEFVADPAALATI 130
>gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]
Length = 1151
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 45 GSNTAPGPALASAAPLLIAFLLGPKVLLVVGVS 77
G+ TA GP + A PL ++ LL LLV +S
Sbjct: 50 GARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLS 82
>gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [Homo
sapiens]
Length = 533
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 4 LLVNVSAHRDDVKLTCQVE--HDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPLL 61
L V+ +R+ + L VE G P + L + PK G APGP S L
Sbjct: 297 LEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEELC 356
Query: 62 IA 63
+A
Sbjct: 357 LA 358
>gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [Homo
sapiens]
Length = 539
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 4 LLVNVSAHRDDVKLTCQVE--HDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPLL 61
L V+ +R+ + L VE G P + L + PK G APGP S L
Sbjct: 303 LEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEELC 362
Query: 62 IA 63
+A
Sbjct: 363 LA 364
>gi|23510323 nephroretinin [Homo sapiens]
Length = 1426
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 20 QVEH---DGQPAVSKSHDLKVSAHPKEQGSNTAPGPAL 54
Q++H G+PAV SH+L+V A EQ + G L
Sbjct: 766 QMKHLLRQGRPAVQASHELEVVATEYEQDNMVVSGDML 803
>gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]
Length = 1021
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 54 LASAAPLLIAFLLGPKVLLVVG-VSVIYVYWKQK 86
+ S+APLL + P VLL++ +S++ +YWK +
Sbjct: 949 ICSSAPLLYFLFICPFVLLLLLLISLLCLYWKAR 982
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 17 LTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT----APGPALASAAPL 60
++ Q +H P +D+ + GS T APGPAL+ + PL
Sbjct: 204 VSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPL 251
>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 35 LKVSAHPKEQGSNTAPGPALASAAPLLIAFLL 66
L++ A QGS AP P A AP A+LL
Sbjct: 66 LQIQASLHSQGSRKAPFPPRAQEAPAPAAWLL 97
>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 35 LKVSAHPKEQGSNTAPGPALASAAPLLIAFLL 66
L++ A QGS AP P A AP A+LL
Sbjct: 66 LQIQASLHSQGSRKAPFPPRAQEAPAPAAWLL 97
>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 35 LKVSAHPKEQGSNTAPGPALASAAPLLIAFLL 66
L++ A QGS AP P A AP A+LL
Sbjct: 66 LQIQASLHSQGSRKAPFPPRAQEAPAPAAWLL 97
>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 1 [Homo sapiens]
Length = 956
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 51 GPALASAAPLLIAFLLGPKVLLVVGVSVIYVYWKQK 86
GP+ PLL+ GP+ +L V + V WKQ+
Sbjct: 858 GPSQNLTHPLLLQVGEGPEAVLTVKGHQVPVVWKQR 893
>gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 2 [Homo sapiens]
Length = 742
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 51 GPALASAAPLLIAFLLGPKVLLVVGVSVIYVYWKQK 86
GP+ PLL+ GP+ +L V + V WKQ+
Sbjct: 644 GPSQNLTHPLLLQVGEGPEAVLTVKGHQVPVVWKQR 679
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 7 NVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASA 57
+V R+D++L + H P V+ H + HP G++ AP P++ S+
Sbjct: 80 DVKPGREDLQLGAIIHHRS-PHVA--HHSPHTNHPNAWGASPAPNPSITSS 127
>gi|66348148 zona pellucida glycoprotein 1 [Homo sapiens]
Length = 638
Score = 25.8 bits (55), Expect = 7.7
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 9 SAHRDDVKLTCQ-VEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAPLLIAFLLG 67
S HR+D V G S+ + + P + N+ S PLL A LL
Sbjct: 557 SGHRNDTARPQDIVSSPGPVGFEDSYGQEPTLGPTDSNGNS-------SLRPLLWAVLLL 609
Query: 68 PKVLLVVGVSV---IYVYWKQK 86
P V LV+G V + W QK
Sbjct: 610 PAVALVLGFGVFVGLSQTWAQK 631
>gi|142976733 surface glycoprotein, Ig superfamily member [Homo
sapiens]
Length = 1264
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 17 LTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAPGPALASAAP-----LLIAFLLGPKVL 71
+ C+ + P S+ +S P GS GPA + A L++ +LG VL
Sbjct: 919 MICETKVKRVPGASEYPVKDLSTPPNSLGSGGNVGPATSPARSSDMLYLIVGCVLGVMVL 978
Query: 72 LVVGVSVIYVYWKQK 86
+++ V + WK +
Sbjct: 979 ILM-VFIAMCLWKNR 992
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,710,044
Number of Sequences: 37866
Number of extensions: 147223
Number of successful extensions: 664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 39
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.