Search of human proteins with 118582284

Search of human proteins with 118582284

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|118582284 msh homeobox 1 [Homo sapiens]
         (303 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|118582284 msh homeobox 1 [Homo sapiens]                            600   e-172
gi|27886557 msh homeobox 2 [Homo sapiens]                             268   6e-72
gi|4758168 distal-less homeobox 2 [Homo sapiens]                       95   9e-20
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             94   2e-19
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  94   2e-19
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  94   2e-19
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  94   2e-19
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]            89   5e-18
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]    87   2e-17
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...    86   3e-17
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    86   4e-17
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]                   85   7e-17
gi|94536800 empty spiracles homolog 1 [Homo sapiens]                   84   1e-16
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]            83   3e-16
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  82   4e-16
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...    82   4e-16
gi|89257348 homeo box HB9 [Homo sapiens]                               82   4e-16
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]            82   6e-16
gi|147901462 brain specific homeobox [Homo sapiens]                    82   8e-16
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]                   82   8e-16
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       81   1e-15
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                81   1e-15
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]                  81   1e-15
gi|70608170 H6 family homeobox 2 [Homo sapiens]                        81   1e-15
gi|4885187 distal-less homeobox 5 [Homo sapiens]                       80   2e-15
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi...    80   2e-15
gi|82659115 distal-less homeobox 6 [Homo sapiens]                      80   3e-15
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    80   3e-15
gi|4504465 homeobox B2 [Homo sapiens]                                  80   3e-15
gi|4885185 distal-less homeobox 3 [Homo sapiens]                       79   5e-15

>gi|118582284 msh homeobox 1 [Homo sapiens]
          Length = 303

 Score =  600 bits (1548), Expect = e-172
 Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1   MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP 60
           MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP
Sbjct: 1   MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP 60

Query: 61  FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 120
           FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV
Sbjct: 61  FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 120

Query: 121 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT 180
           GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT
Sbjct: 121 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT 180

Query: 181 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM 240
           TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM
Sbjct: 181 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM 240

Query: 241 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY 300
           AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY
Sbjct: 241 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY 300

Query: 301 HLT 303
           HLT
Sbjct: 301 HLT 303


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score =  268 bits (684), Expect = 6e-72
 Identities = 161/275 (58%), Positives = 189/275 (68%), Gaps = 25/275 (9%)

Query: 31  QAPSAAAATAAAMGADEEGAKPK-VSPSLLPFSVEALMADHRKPGAKESALAPSEGVQAA 89
           + P+  A      G  E  A+ + V  S LPFSVEALM+D + P  KE++  P+E   +A
Sbjct: 16  EGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPP--KEASPLPAESA-SA 72

Query: 90  GGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSP 149
           G + +PL +     GA +A S          G L+K  E A VK+E+ E  +   WMQ P
Sbjct: 73  GATLRPLLL--SGHGAREAHSP---------GPLVKPFETASVKSENSE--DGAAWMQEP 119

Query: 150 -RFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSS 208
            R+SPPP R +SP  CTLRKHKTNRKPRTPFTT+QLLALERKFRQKQYLSIAERAEFSSS
Sbjct: 120 GRYSPPP-RHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSS 178

Query: 209 LSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAG 268
           L+LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML P++F L FP+  P        
Sbjct: 179 LNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML-PSSFSLPFPISSP-----LQA 232

Query: 269 ASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT 303
           AS+YGAS PF R  LP+ PVGLY   VGY MYHL+
Sbjct: 233 ASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS 267


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score = 94.7 bits (234), Expect = 9e-20
 Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 37/287 (12%)

Query: 24  PAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPS 83
           P+GGGAG   +++++++          KP+ SP+L P S            A +S+   +
Sbjct: 30  PSGGGAGPGGNSSSSSSLH--------KPQESPTL-PVST-----------ATDSSYYTN 69

Query: 84  EGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERT 143
           +   A GG     G P   +G+    +S      +S      L   A   + +P      
Sbjct: 70  QQHPAGGGGGG--GSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTS-- 125

Query: 144 PWMQSPRFSPPPARRLSPPACTLR-KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202
               SP  + P    L P    +  K K  RKPRT +++ QL AL+R+F++ QYL++ ER
Sbjct: 126 ---SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPER 182

Query: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQE-----AELEKLKMAAKPML-PPAAFGLSFP 256
           AE ++SL LT+TQVKIWFQNRR+K K++ +     +E      A+ P   PP +   S+ 
Sbjct: 183 AELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWD 242

Query: 257 LGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT 303
            G P  +A   G    G SG     + P +    +  +  Y  YH T
Sbjct: 243 FGVPQRMAGGGGPG-SGGSGAGSSGSSPSSAASAFLGN--YPWYHQT 286


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%)

Query: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
           AG GAGQA     + A     +EE A+    P L   +   L    R P A   ALA  E
Sbjct: 74  AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 129

Query: 85  GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144
             +  GG   P+  PPGS G                                        
Sbjct: 130 PCEDGGGG--PVRSPPGSPG---------------------------------------- 147

Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204
                  SP P RR   P C        R+ RT FT  QL+ALE KFR  +YLS+ ER  
Sbjct: 148 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 195

Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261
            + SLSLTETQVKIWFQNRR K K+                  P A G +   GG   P 
Sbjct: 196 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 239

Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293
           A     G    G+ GP    AL       Y+A
Sbjct: 240 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 271


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%)

Query: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
           AG GAGQA     + A     +EE A+    P L   +   L    R P A   ALA  E
Sbjct: 96  AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151

Query: 85  GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144
             +  GG   P+  PPGS G                                        
Sbjct: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169

Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204
                  SP P RR   P C        R+ RT FT  QL+ALE KFR  +YLS+ ER  
Sbjct: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217

Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261
            + SLSLTETQVKIWFQNRR K K+                  P A G +   GG   P 
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261

Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293
           A     G    G+ GP    AL       Y+A
Sbjct: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%)

Query: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
           AG GAGQA     + A     +EE A+    P L   +   L    R P A   ALA  E
Sbjct: 96  AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151

Query: 85  GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144
             +  GG   P+  PPGS G                                        
Sbjct: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169

Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204
                  SP P RR   P C        R+ RT FT  QL+ALE KFR  +YLS+ ER  
Sbjct: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217

Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261
            + SLSLTETQVKIWFQNRR K K+                  P A G +   GG   P 
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261

Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293
           A     G    G+ GP    AL       Y+A
Sbjct: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%)

Query: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
           AG GAGQA     + A     +EE A+    P L   +   L    R P A   ALA  E
Sbjct: 96  AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151

Query: 85  GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144
             +  GG   P+  PPGS G                                        
Sbjct: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169

Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204
                  SP P RR   P C        R+ RT FT  QL+ALE KFR  +YLS+ ER  
Sbjct: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217

Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261
            + SLSLTETQVKIWFQNRR K K+                  P A G +   GG   P 
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261

Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293
           A     G    G+ GP    AL       Y+A
Sbjct: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293


>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
          Length = 240

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 37/204 (18%)

Query: 80  LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHF----------------SVGGL 123
           LAP   V AA     PLG+ P +  +P+   S RP GH                 S    
Sbjct: 21  LAPVPSVAAA----YPLGLSPTTAASPNLSYS-RPYGHLLSYPYTEPANPGDSYLSCQQP 75

Query: 124 LKLPEDALVKAESPEKPERTPWMQSPRFSPPPA-RRLSPPACTLRKHKTNRKPRTPFTTA 182
             L +     AE P++ E     + PR SP P+ RR   PA      K  RKPRT +++ 
Sbjct: 76  AALSQPLCGPAEHPQELEADS--EKPRLSPEPSERRPQAPA------KKLRKPRTIYSSL 127

Query: 183 QLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL-------QEAEL 235
           QL  L ++F+  QYL++ ERA+ ++ L LT+TQVKIWFQN+R+K K+L       QE + 
Sbjct: 128 QLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDF 187

Query: 236 EKLKMAAKPMLPPAAFGLSFPLGG 259
                +  P  PP       P  G
Sbjct: 188 PGRTFSVSPCSPPLPSLWDLPKAG 211


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 81/271 (29%), Positives = 119/271 (43%), Gaps = 30/271 (11%)

Query: 52  PKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQA--AGGSAQPLGVPPGSLGAPDAP 109
           P ++P+  PFSV+ ++   ++  +  +A   S  ++A  A  S       P +   P+A 
Sbjct: 5   PALTPT--PFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPEAA 62

Query: 110 SSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKH 169
           +   P     +G   + P  A   +  P  P   P   S        R      C L+K 
Sbjct: 63  APGLPELRAELG---RAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKA 119

Query: 170 ----------------KTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE 213
                           +  RKPR  F+ AQ+  LER+F+Q++YLS  ER + +S L LT 
Sbjct: 120 VELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 179

Query: 214 TQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPL----GGPAAVAAAAGA 269
           TQVKIWFQNRR K KR ++ +  +L +   P  PP A  ++ P+    G P    +A  A
Sbjct: 180 TQVKIWFQNRRYKCKRQRQDQTLEL-VGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYA 238

Query: 270 SLYGAS-GPFQRAALPVAP-VGLYTAHVGYS 298
             YG    P+   A P  P  G      GYS
Sbjct: 239 PAYGVGLNPYGYNAYPAYPGYGGAACSPGYS 269


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 10/131 (7%)

Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227
           K +  RKPR  F+ AQ+LALER+F+Q++YLS  ER   +S+L LT TQVKIWFQNRR K 
Sbjct: 46  KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105

Query: 228 KRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAP 287
           KR  + + + L++A  P+ P           G   +    GA  +    P+  A  P   
Sbjct: 106 KR--QRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAPAF--PSPYSAAVSP--- 158

Query: 288 VGLYTAHVGYS 298
              Y+ + GYS
Sbjct: 159 ---YSCYGGYS 166


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 80/244 (32%), Positives = 108/244 (44%), Gaps = 31/244 (12%)

Query: 71  RKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDA 130
           R PG   S L   E +         LG  P   GA  A    R LG  +     K PE+ 
Sbjct: 23  RSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGAKERDRRLG--ARPACPKAPEEG 80

Query: 131 LVKAESPEKPERTPWMQSPR-FSP--PPARRLSP-----PACTLRK-------HKTNRKP 175
             +   P  P   P  ++PR + P  P   R SP     PA    K        K +R+ 
Sbjct: 81  S-EPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRN 139

Query: 176 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAEL 235
           RT FTT QL  LER F +  Y  +  R E +  ++L E +V++WFQNRRAK +R ++ E+
Sbjct: 140 RTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEV 199

Query: 236 EKLKMAAKPML-----PPAAFGLSFPLG-GPAAVAAAAGASLYGASGPFQRAALPVAPVG 289
             +K+   P+L     PP+A     PLG GP +    AG +L     P +    P  P G
Sbjct: 200 SSMKLQDSPLLSFSRSPPSA--TLSPLGAGPGSGGGPAGGAL-----PLESWLGPPLPGG 252

Query: 290 LYTA 293
             TA
Sbjct: 253 GATA 256


>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
          Length = 330

 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 70/244 (28%), Positives = 100/244 (40%), Gaps = 50/244 (20%)

Query: 27  GGAGQAPSAAAATAAAMGADEEGAKP---------KVSPSLLPFSVEALMADHRKPGAKE 77
           GG G A +  A  A A G    G             + P    ++V   +A    PG   
Sbjct: 58  GGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGG 117

Query: 78  SALAPSEGVQAAGGSAQPLGVP---------PGSLGAPDAPSSPRPLGHFSVGGLLKLPE 128
            +   +  + AAG    P   P         P + G P  PS P   G  ++ GL     
Sbjct: 118 GSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLT---- 173

Query: 129 DALVKAESPEKPERTPWMQS------PRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTA 182
                          PWM+S       RF+  P +  +PP          +KPRT FT  
Sbjct: 174 --------------FPWMESNRRYTKDRFTGHPYQNRTPPK--------KKKPRTSFTRL 211

Query: 183 QLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 242
           Q+  LE++F +++YL+ AERA  + +L +T+ QVK WFQNRR K +R    E E  +  A
Sbjct: 212 QICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQA 271

Query: 243 KPML 246
             +L
Sbjct: 272 NRIL 275


>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
          Length = 290

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 78/236 (33%), Positives = 101/236 (42%), Gaps = 22/236 (9%)

Query: 2   APAADMTSLPLGVK--VEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLL 59
           APAA     P   +    +S   K  G G G     A +   A  A EE  +P       
Sbjct: 28  APAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGGAGSHLLAAAASEEPLRPT------ 81

Query: 60  PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGH-- 117
                AL   H  P A E+A        AA G+ + L   P  L  P+A + P    H  
Sbjct: 82  -----ALNYPH--PSAAEAAFVSGFPAAAAAGAGRSLYGGP-ELVFPEAMNHPALTVHPA 133

Query: 118 FSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKT-NRKP- 175
             +G     P  +   A+  +     PW+   RF     +    P   L  H    RKP 
Sbjct: 134 HQLGASPLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFARKPK 193

Query: 176 --RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 229
             RT F+ +QLL LER F +  Y+  AER + + SLSL+ETQVK+WFQNRR K KR
Sbjct: 194 RIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKR 249



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/41 (46%), Positives = 22/41 (53%)

Query: 233 AELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYG 273
           A  E L+  A     P+A   +F  G PAA AA AG SLYG
Sbjct: 73  ASEEPLRPTALNYPHPSAAEAAFVSGFPAAAAAGAGRSLYG 113


>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
          Length = 255

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 46/191 (24%)

Query: 104 GAPDAPSSPRPL--GHFSVGGLLKL----PEDALVKAESPEKPERTPWMQS--------- 148
           G P+   SP P+  GH+S+  L       P+ A   A S  +P   P++ S         
Sbjct: 24  GPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPY 83

Query: 149 -------PRFSPPPARRLSPPACTLRKH--------------KTNRKPRTPFTTAQLLAL 187
                  P  +     RL  P     K               K  RKPRT +++ QL AL
Sbjct: 84  ISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGKKIRKPRTIYSSLQLQAL 143

Query: 188 ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE---AELE-------K 237
            R+F+Q QYL++ ERAE ++SL LT+TQVKIWFQN+R+K K+L +   A LE       +
Sbjct: 144 NRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAALEGSALANGR 203

Query: 238 LKMAAKPMLPP 248
              A  P +PP
Sbjct: 204 ALSAGSPPVPP 214


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 79/268 (29%), Positives = 105/268 (39%), Gaps = 42/268 (15%)

Query: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
           + GG G +PSA +        DE+  + +   +      E         GA+ S    + 
Sbjct: 540 SSGGGGHSPSADSGDEVP--DDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAA 597

Query: 85  GVQAAGGSAQPLGVPPGSL-GAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERT 143
              A+ G+       PG    +P AP  P   G  + GG    P+     A    KP+R 
Sbjct: 598 ETDASPGATVDEAAAPGPRENSPVAPGPPG--GAAAPGGAGTTPQGTATAA----KPKRK 651

Query: 144 PWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERA 203
                 +   P                  R+ RT FT  QL+ALE KF+  +YLS+ ER 
Sbjct: 652 RTGSDSKSGKP------------------RRARTAFTYEQLVALENKFKATRYLSVCERL 693

Query: 204 EFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAV 263
             + SLSLTETQVKIWFQNRR K K        K    A    P    G   P  GP   
Sbjct: 694 NLALSLSLTETQVKIWFQNRRTKWK--------KQNPGADTSAPTGGGGGPGPGAGP--- 742

Query: 264 AAAAGASLYGASGPFQRAALPVAPVGLY 291
               G  L G   P   +    AP+G++
Sbjct: 743 ----GTGLPGGLSPLSPSPPMGAPLGMH 766


>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 59/145 (40%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227
           K ++ RKPR  F+ AQ+  LER+F+Q++YLS  ER   +SSL LT TQVKIWFQNRR K 
Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203

Query: 228 KRLQEAELEKLKMAAKPMLP-----PAAFGLSFPLGGPAAVAAAA----GASLYG----- 273
           KR ++ +  +L   A P  P     P       P   P+A A  A    GAS Y      
Sbjct: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFP 263

Query: 274 ASGPFQRAALPVAPVGLYTAHVGYS 298
           A G    AA   A      A   YS
Sbjct: 264 AYGYGNSAAAAAAAAAAAAAAAAYS 288



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 27/97 (27%)

Query: 2   APAADMTSLPLGVKVEDSAFG--KPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLL 59
           A AA   +         S++G   PAGGG G   ++AA TA        G  P V+ S L
Sbjct: 272 AAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNL 331

Query: 60  PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPL 96
                                    G   +GGSAQPL
Sbjct: 332 -------------------------GGFGSGGSAQPL 343


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 91/296 (30%), Positives = 120/296 (40%), Gaps = 57/296 (19%)

Query: 2   APAADMTSLPLGVKVEDSAFGKPAGGGAGQAP-------SAAAATAAAMGADEEGAKPKV 54
           A +A    L L   +  +A G   GGG G A        S A++   A  AD   A+   
Sbjct: 20  AASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPS 79

Query: 55  SPSLLPFSVEALMAD---------------------HRKPGAKESALAPSEGVQAAGGSA 93
            P LL      L                        H  PGA  +A A +    AAGG A
Sbjct: 80  PPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAA-AAGGLA 138

Query: 94  QPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQS--PRF 151
             L  P G+ G    P+     GH  V G       A +  + P      P +Q   P  
Sbjct: 139 LGLH-PGGAQGGAGLPAQAALYGH-PVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAH 196

Query: 152 SPPPAR------------RLSPPACTLRKH-------KTN-----RKPRTPFTTAQLLAL 187
              P +            R S     L K        ++N     R+PRT FT+ QLL L
Sbjct: 197 PADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLEL 256

Query: 188 ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAK 243
           E +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++A+ +  + A K
Sbjct: 257 EHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEK 312


>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
          Length = 168

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 14/124 (11%)

Query: 144 PWMQSPRFSPPPA-RRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202
           P  + PR SP P+ RR   PA      K  RKPRT +++ QL  L ++F+  QYL++ ER
Sbjct: 22  PDSEKPRLSPEPSERRPQAPA------KKLRKPRTIYSSLQLQHLNQRFQHTQYLALPER 75

Query: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPPAAFGLSF 255
           A+ ++ L LT+TQVKIWFQN+R+K K+L       QE +      +  P  PP       
Sbjct: 76  AQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL 135

Query: 256 PLGG 259
           P  G
Sbjct: 136 PKAG 139


>gi|147901462 brain specific homeobox [Homo sapiens]
          Length = 233

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 55/136 (40%), Positives = 72/136 (52%), Gaps = 8/136 (5%)

Query: 144 PWMQSPRFSPPPARRLSPPACTLR-KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202
           P+  +    P PA    P    L  KH   RK RT F+ +QL  LE++F  ++YLS  ER
Sbjct: 81  PYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPER 140

Query: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAA 262
            E +++LSL+ETQVK WFQNRR K K+      ++ K    P  P  +     P G  AA
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGS-----PRGSEAA 195

Query: 263 VAAAAGASLYGASGPF 278
            AA A  SL   +GPF
Sbjct: 196 TAAEARLSL--PAGPF 209


>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
          Length = 284

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 62/182 (34%), Positives = 85/182 (46%), Gaps = 20/182 (10%)

Query: 73  PGAKESALAPSEGVQAAG----GSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPE 128
           P    + L  S GV   G     + +PL VPP + GAP  P    P G    GGL  L  
Sbjct: 62  PAGSLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPG---PSGLGGAGGLAGLTF 118

Query: 129 DALVKAESPEKPERT----PWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQL 184
             +       K   T    P+  + R   P   R  P           +KPRT F+ +Q+
Sbjct: 119 PWMDSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTPPK---------RKKPRTSFSRSQV 169

Query: 185 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP 244
           L LER+F +++YL+ AERA  + +L +T+ QVK WFQNRR K +R    E E  +  A  
Sbjct: 170 LELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGR 229

Query: 245 ML 246
           +L
Sbjct: 230 LL 231


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 85/254 (33%), Positives = 110/254 (43%), Gaps = 61/254 (24%)

Query: 24  PAGGGAGQAPSAAAA----TAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESA 79
           PAGG   +  ++  A    ++ A G D +  +P     LL    +    D + P      
Sbjct: 124 PAGGHLPRPEASEKALLRDSSPASGTDRDSPEP-----LLKADPDHKELDSKSPDEIILE 178

Query: 80  LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLP--EDALVKAESP 137
            + SE  +  G +A      PG+ GA             SVG     P  ED    AESP
Sbjct: 179 ESDSEESKKEGEAA------PGAAGA-------------SVGAAAATPGAEDWKKGAESP 219

Query: 138 EKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYL 197
           EK                      PAC  RK KT    RT F+ +Q+  LE  F  K+YL
Sbjct: 220 EKK---------------------PAC--RKKKT----RTVFSRSQVFQLESTFDMKRYL 252

Query: 198 SIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM----AAKPMLPPAAFGL 253
           S +ERA  ++SL LTETQVKIWFQNRR K KR   AELE   +    A + +  P  +  
Sbjct: 253 SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHE 312

Query: 254 SFPLGGPAAVAAAA 267
           +    G AA AA A
Sbjct: 313 NSAAEGAAAAAAGA 326


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 81/267 (30%), Positives = 100/267 (37%), Gaps = 40/267 (14%)

Query: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
           + GG G +PSA +        D+E      +P       EA        G      A   
Sbjct: 137 SSGGGGHSPSADSGDEVP---DDEDDDEDEAPE-----TEAARGAEEARGGGGGLGARGS 188

Query: 85  GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144
           G Q A  +    G       AP  P    P+     GG           A +P     TP
Sbjct: 189 GCQGAAETDASPGATVDEAAAP-GPRENSPVAQGPPGG-----------AAAPGGAGTTP 236

Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204
              +    P   R  S       K    R+ RT FT  QL+ALE KF+  +YLS+ ER  
Sbjct: 237 QGTATAAKPKRKRTGSDS-----KSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLN 291

Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVA 264
            + SLSLTETQVKIWFQNRR K K        K    A    P    G   P  GP    
Sbjct: 292 LALSLSLTETQVKIWFQNRRTKWK--------KQNPGADTSAPTGGGGGPGPGAGP---- 339

Query: 265 AAAGASLYGASGPFQRAALPVAPVGLY 291
              G  L G   P   +    AP+G++
Sbjct: 340 ---GTGLPGGLSPLSPSPPMGAPLGMH 363


>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
          Length = 291

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 75/250 (30%), Positives = 101/250 (40%), Gaps = 40/250 (16%)

Query: 2   APAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGAD-EEGAKPKVSPSLLP 60
           +P  D    P G     S  G P GG  G    +  A+ A +GA  E+     V+ SL P
Sbjct: 26  SPDQDSAPAPRGPD-GASYLGGPPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAP 84

Query: 61  FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 120
             V  + A    PGA                       PP     P  PS P      S+
Sbjct: 85  AGVIRVPAHRPLPGAVP---------------------PPLPSALPAMPSVPTV---SSL 120

Query: 121 GGLLKLP----EDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPR 176
           GG L  P        VK         TP+  + R   P   R  P           +KPR
Sbjct: 121 GG-LNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPP---------KRKKPR 170

Query: 177 TPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELE 236
           T F+  Q+  LE++F +++YL+ AERA  + SL +T+ QVK WFQNRR K +R    E E
Sbjct: 171 TSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEERE 230

Query: 237 KLKMAAKPML 246
             +  A  ++
Sbjct: 231 AERQQASRLM 240


>gi|70608170 H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 85/261 (32%), Positives = 107/261 (40%), Gaps = 17/261 (6%)

Query: 17  EDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAK-PKVSPSLLPFSVEALMADHRKPGA 75
           ED+  G PA GG       +        A  E    P    SL   S E    D  K  A
Sbjct: 5   EDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPA 64

Query: 76  KESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAE 135
                 P +      G      +P   LG P       P      GGL + P  +   ++
Sbjct: 65  ---CFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGP------GGLERTPFLSPSHSD 115

Query: 136 SPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQ 195
             E+ ER     SP    P + R        +     +K RT F+ +Q+  LE  F  K+
Sbjct: 116 FKEEKERLLPAGSPS---PGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKR 172

Query: 196 YLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMA---AKPMLP-PAAF 251
           YLS +ERA  +SSL LTETQVK WFQNRR K KR   AELE   MA   A+ ++  P  F
Sbjct: 173 YLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVF 232

Query: 252 GLSFPLGGPAAVAAAAGASLY 272
             S  L  P   + A  A LY
Sbjct: 233 RDSSLLRVPVPRSLAFPAPLY 253


>gi|4885187 distal-less homeobox 5 [Homo sapiens]
          Length = 289

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 39/86 (45%), Positives = 61/86 (70%), Gaps = 2/86 (2%)

Query: 149 PRFSPPPARRLSPPACTL--RKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFS 206
           P  +  P + ++ P   +   K K  RKPRT +++ QL AL+R+F++ QYL++ ERAE +
Sbjct: 112 PSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 171

Query: 207 SSLSLTETQVKIWFQNRRAKAKRLQE 232
           +SL LT+TQVKIWFQN+R+K K++ +
Sbjct: 172 ASLGLTQTQVKIWFQNKRSKIKKIMK 197


>gi|28912912 NK6 transcription factor related, locus 2 [Homo
           sapiens]
          Length = 277

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 73/236 (30%), Positives = 106/236 (44%), Gaps = 42/236 (17%)

Query: 33  PSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQAAG-- 90
           P A   ++A + A    A+ K S  L P++++         G K  AL         G  
Sbjct: 6   PGAFVLSSAPLAALHNMAEMKTS--LFPYALQG------PAGFKAPALGGLGAQLPLGTP 57

Query: 91  -GSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVK------AESPEKP--- 140
            G +  LG P G+ G       PR  G  S  G+   P  A+ +      AE P +P   
Sbjct: 58  HGISDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIF 117

Query: 141 -----ERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQ 195
                +  PW + PR + P     +P    L K    +  R  F+  Q+ ALE+ F Q +
Sbjct: 118 WPGVVQGAPW-RDPRLAGP-----APAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTK 171

Query: 196 YLSIAERAEFSSSLSLTETQVKIWFQNRRAK-----------AKRLQEAELEKLKM 240
           YL+  ERA  + SL +TE+QVK+WFQNRR K           AK+ Q+++ EKLK+
Sbjct: 172 YLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKV 227


>gi|82659115 distal-less homeobox 6 [Homo sapiens]
          Length = 265

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 16/105 (15%)

Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227
           K K  RKPRT +++ QL AL  +F+Q QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194

Query: 228 KRLQEA-----ELEKLKMAA-----KPMLPP------AAFGLSFP 256
           K+L +      E + L+ +A      P LPP      +A G+S P
Sbjct: 195 KKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMP 239


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 59/131 (45%), Positives = 71/131 (54%), Gaps = 17/131 (12%)

Query: 173 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 232
           +K RT F+ +Q+  LE  F  K+YLS AERA  ++SL LTETQVKIWFQNRR K KR   
Sbjct: 204 KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA 263

Query: 233 AELEKL--------KMAAKPML----PPAAFGLSFPLGGPAAVAAAAGA---SLYGASG- 276
           AELE          ++   P+L    PPAA     P   P  +A AA A    L G SG 
Sbjct: 264 AELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGA 323

Query: 277 -PFQRAALPVA 286
             +  AA P A
Sbjct: 324 LAYPLAAFPAA 334


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 25/203 (12%)

Query: 72  KPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDAL 131
           +PGA  +   P    +A  G A P   PP    AP AP  P                  +
Sbjct: 57  QPGAS-TLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPW-----------------M 98

Query: 132 VKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTN----RKPRTPFTTAQLLAL 187
            + +S +KP ++    SP  S  PA  +  PA  L   +      R+ RT +T  QLL L
Sbjct: 99  KEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLEL 158

Query: 188 ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLP 247
           E++F   +YL    R E ++ L LTE QVK+WFQNRR K KR  +    +     +P  P
Sbjct: 159 EKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ---HREPPDGEPACP 215

Query: 248 PAAFGLSFPLGGPAAVAAAAGAS 270
            A   +  P   PAA      AS
Sbjct: 216 GALEDICDPAEEPAASPGGPSAS 238


>gi|4885185 distal-less homeobox 3 [Homo sapiens]
          Length = 287

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227
           K K  RKPRT +++ QL AL+R+F++ QYL++ ERAE ++ L LT+TQVKIWFQNRR+K 
Sbjct: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184

Query: 228 KRL 230
           K+L
Sbjct: 185 KKL 187


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,108,975
Number of Sequences: 37866
Number of extensions: 820207
Number of successful extensions: 6861
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 459
Number of HSP's that attempted gapping in prelim test: 5140
Number of HSP's gapped (non-prelim): 2032
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.