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Search of human proteins with 118403324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118403324 transmembrane protein 134 isoform c [Homo sapiens] 379 e-106
gi|13376701 transmembrane protein 134 isoform a [Homo sapiens] 371 e-103
gi|118403326 transmembrane protein 134 isoform b [Homo sapiens] 333 4e-92
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 41 5e-04
gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 41 5e-04
gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 41 5e-04
gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 41 5e-04
gi|239745297 PREDICTED: similar to hCG2004312 [Homo sapiens] 31 0.54
gi|239745266 PREDICTED: similar to cis-Golgi matrix protein GM13... 31 0.54
gi|13129000 meteorin, glial cell differentiation regulator [Homo... 31 0.70
gi|13899255 membrane frizzled-related protein [Homo sapiens] 30 1.2
gi|196123585 cytochrome c oxidase subunit III [Homo sapiens nean... 30 1.6
gi|251831113 cytochrome c oxidase subunit III [Homo sapiens] 30 1.6
gi|5174633 receptor for egg jelly-like protein precursor [Homo s... 29 2.0
gi|58530863 melanoma antigen family A, 10 [Homo sapiens] 28 4.6
gi|10567820 melanoma antigen family A, 10 [Homo sapiens] 28 4.6
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 28 5.9
gi|124107616 claudin 23 [Homo sapiens] 28 5.9
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 28 5.9
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 28 5.9
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 28 5.9
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 27 7.8
gi|117938328 l(3)mbt-like isoform I [Homo sapiens] 27 7.8
gi|206597541 solute carrier family 39 (metal ion transporter), m... 27 7.8
gi|206597539 solute carrier family 39 (metal ion transporter), m... 27 7.8
gi|117938330 l(3)mbt-like isoform II [Homo sapiens] 27 7.8
>gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
Length = 186
Score = 379 bits (973), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
Query: 61 ENDEDGAQASPEPDGGVGTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL 120
ENDEDGAQASPEPDGGVGTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL
Sbjct: 61 ENDEDGAQASPEPDGGVGTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL 120
Query: 121 LLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFY 180
LLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFY
Sbjct: 121 LLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFY 180
Query: 181 LPYFEK 186
LPYFEK
Sbjct: 181 LPYFEK 186
>gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
Length = 195
Score = 371 bits (953), Expect = e-103
Identities = 186/195 (95%), Positives = 186/195 (95%), Gaps = 9/195 (4%)
Query: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
Query: 61 ENDEDGAQASPEPDGGVGT---------SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 111
ENDEDGAQASPEPDGGVGT SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
Query: 112 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 171
RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 180
Query: 172 GHRGFQFFYLPYFEK 186
GHRGFQFFYLPYFEK
Sbjct: 181 GHRGFQFFYLPYFEK 195
>gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]
Length = 180
Score = 333 bits (855), Expect = 4e-92
Identities = 171/195 (87%), Positives = 171/195 (87%), Gaps = 24/195 (12%)
Query: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
Query: 61 ENDEDGAQASPEPDGGVGT---------SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 111
ENDEDGAQASPEPDGGVGT SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
Query: 112 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 171
RRVVLASFLLLLLGL GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 121 RRVVLASFLLLLLGL---------------GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 165
Query: 172 GHRGFQFFYLPYFEK 186
GHRGFQFFYLPYFEK
Sbjct: 166 GHRGFQFFYLPYFEK 180
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 113 RVVLASFLLLLLGLVLILVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCA 169
+ + + +L L+G LI++G L + G A+ + G L+ +PG YH+ Y A
Sbjct: 107 KAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYA 166
Query: 170 VKGHRGFQFFYLPYFE 185
KG+RG+ + +P F+
Sbjct: 167 SKGYRGYSYDDIPDFD 182
>gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 113 RVVLASFLLLLLGLVLILVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCA 169
+ + + +L L+G LI++G L + G A+ + G L+ +PG YH+ Y A
Sbjct: 44 KAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYA 103
Query: 170 VKGHRGFQFFYLPYFE 185
KG+RG+ + +P F+
Sbjct: 104 SKGYRGYSYDDIPDFD 119
>gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 113 RVVLASFLLLLLGLVLILVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCA 169
+ + + +L L+G LI++G L + G A+ + G L+ +PG YH+ Y A
Sbjct: 44 KAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYA 103
Query: 170 VKGHRGFQFFYLPYFE 185
KG+RG+ + +P F+
Sbjct: 104 SKGYRGYSYDDIPDFD 119
>gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 113 RVVLASFLLLLLGLVLILVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCA 169
+ + + +L L+G LI++G L + G A+ + G L+ +PG YH+ Y A
Sbjct: 44 KAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYA 103
Query: 170 VKGHRGFQFFYLPYFE 185
KG+RG+ + +P F+
Sbjct: 104 SKGYRGYSYDDIPDFD 119
>gi|239745297 PREDICTED: similar to hCG2004312 [Homo sapiens]
Length = 131
Score = 31.2 bits (69), Expect = 0.54
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 19 EDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDG-AQASPEPDGGV 77
E P PES G + FG H + E E +R + Q G QA P P G
Sbjct: 48 EVAAPAPESGGESVFGETHRALQGAMEKLQESTSARGQCQRRSTGRGGHRQAGPGPGGDE 107
Query: 78 G 78
G
Sbjct: 108 G 108
>gi|239745266 PREDICTED: similar to cis-Golgi matrix protein GM130
[Homo sapiens]
Length = 131
Score = 31.2 bits (69), Expect = 0.54
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 19 EDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDG-AQASPEPDGGV 77
E P PES G + FG H + E E +R + Q G QA P P G
Sbjct: 48 EVAAPAPESGGESVFGETHRALQGAMEKLQESTSARGQCQRRSTGRGGHRQAGPGPGGDE 107
Query: 78 G 78
G
Sbjct: 108 G 108
>gi|13129000 meteorin, glial cell differentiation regulator [Homo
sapiens]
Length = 293
Score = 30.8 bits (68), Expect = 0.70
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 13 AFELSLEDGGPGPESSGVARFGPLHFERRARFEVA--DEDKQSRLRYQNLENDEDGAQAS 70
A EL L +G PGP R+GP ERRA F A +D R+ E EDG
Sbjct: 102 ALELLLAEG-PGPAGGRCVRWGPR--ERRALFLQATPHQDISRRVAAFRFELREDGRPEL 158
Query: 71 PEPDGGVG 78
P G+G
Sbjct: 159 PPQAHGLG 166
>gi|13899255 membrane frizzled-related protein [Homo sapiens]
Length = 579
Score = 30.0 bits (66), Expect = 1.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 114 VVLASFLLLLLGLVLILVGVGLEATPSPGVS 144
++L+S LLLLLGL++ ++ L+A P G S
Sbjct: 71 LLLSSLLLLLLGLLVAIILAQLQAAPPSGAS 101
>gi|196123585 cytochrome c oxidase subunit III [Homo sapiens
neanderthalensis]
Length = 260
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 73 PDGGVGTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLL-LLLGLVLILV 131
P G+ + +++S + +W H L++ NR ++ + L+ +LLGL L+
Sbjct: 117 PPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLL 176
Query: 132 GVG----LEATPSPGVSSAIFFV 150
T S G+ + FFV
Sbjct: 177 QASEYFESPFTISDGIYGSTFFV 199
>gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 73 PDGGVGTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLL-LLLGLVLILV 131
P G+ + +++S + +W H L++ NR ++ + L+ +LLGL L+
Sbjct: 117 PPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLL 176
Query: 132 GVG----LEATPSPGVSSAIFFV 150
T S G+ + FFV
Sbjct: 177 QASEYFESPFTISDGIYGSTFFV 199
>gi|5174633 receptor for egg jelly-like protein precursor [Homo
sapiens]
Length = 2253
Score = 29.3 bits (64), Expect = 2.0
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 82 QWSFSTISSSTQRSYNTCCSWTQHPLIQKNR---RVVLASFLLLLLGLVLIL 130
+W++S + STQ ++ C S Q+ NR + L+SF+L+++ +++ L
Sbjct: 2115 EWNYSNLIHSTQTVFSYCVSAFQNTEFSNNRILGVLFLSSFMLVMICVLINL 2166
>gi|58530863 melanoma antigen family A, 10 [Homo sapiens]
Length = 369
Score = 28.1 bits (61), Expect = 4.6
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 48 DEDKQSRLRYQNLENDEDGAQA--SPEPDGGVGTSSQWSF-STISSSTQRSYNTCCSWTQ 104
+ED QS+ Q LE GAQA + E D TS+ SF S+ SS+ S ++C
Sbjct: 13 EEDLQSQSETQGLE----GAQAPLAVEEDASSSTSTSSSFPSSFPSSSSSSSSSC----- 63
Query: 105 HPLIQKNRRVVLA 117
+PLI V A
Sbjct: 64 YPLIPSTPEEVSA 76
>gi|10567820 melanoma antigen family A, 10 [Homo sapiens]
Length = 369
Score = 28.1 bits (61), Expect = 4.6
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 48 DEDKQSRLRYQNLENDEDGAQA--SPEPDGGVGTSSQWSF-STISSSTQRSYNTCCSWTQ 104
+ED QS+ Q LE GAQA + E D TS+ SF S+ SS+ S ++C
Sbjct: 13 EEDLQSQSETQGLE----GAQAPLAVEEDASSSTSTSSSFPSSFPSSSSSSSSSC----- 63
Query: 105 HPLIQKNRRVVLA 117
+PLI V A
Sbjct: 64 YPLIPSTPEEVSA 76
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 27.7 bits (60), Expect = 5.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 27 SSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTSSQWS 84
SSGV+ G LH + F + + L Q ++E GA+ + GV + WS
Sbjct: 342 SSGVS--GQLHGDHYYTFNIHKPSSHTSLANQGARSEERGARLAESRGRGVTPRASWS 397
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 27.7 bits (60), Expect = 5.9
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 83 WSFSTISSSTQRSYNTCCSW----TQHPLIQKNRRVVLASFLLLLLGLVLILVGVGL-EA 137
W SS +R W Q L+ R +++ S +LGL+L +GV +
Sbjct: 50 WDMCREQSSRERECGQTDQWGYFEAQPVLVA--RALMVTSLAATVLGLLLASLGVRCWQD 107
Query: 138 TPS---PGVSSAIFFVPGFLLLVPGVYHVIFI 166
P+ G+S + FV G L L+P ++ F+
Sbjct: 108 EPNFVLAGLSGVVLFVAGLLGLIPVSWYNHFL 139
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 29 GVARFGPLHF-------ERRARFEVADEDKQSRLRYQNLENDEDGAQASPEP 73
GV++ P H R AR E ED SRL ++ E D+D P+P
Sbjct: 193 GVSKKAPRHHLSVPCTRPREARQEA--EDSTSRLSAESGETDQDAGDVGPDP 242
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 29 GVARFGPLHF-------ERRARFEVADEDKQSRLRYQNLENDEDGAQASPEP 73
GV++ P H R AR E ED SRL ++ E D+D P+P
Sbjct: 142 GVSKKAPRHHLSVPCTRPREARQEA--EDSTSRLSAESGETDQDAGDVGPDP 191
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 27.7 bits (60), Expect = 5.9
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 19 EDGGPG-PESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGV 77
E GPG PE G P E +A E E++Q +L+ ++ + PE + G
Sbjct: 85 EPAGPGEPEGPGDPAAAPAEAEEQA-VEARQEEEQ------DLDGEKGPSSEGPEEEDGE 137
Query: 78 GTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNR 112
G S ++S + + + T + +QK +
Sbjct: 138 GFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQ 172
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 27.3 bits (59), Expect = 7.8
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 49 EDKQSRLRYQNLENDEDGAQASPEPDGGVGTSSQWSFSTISS-STQRSYNTCCSWTQ--- 104
++K+S+ + + E +ED S EP W I ++ Y T ++
Sbjct: 124 KEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQ 183
Query: 105 --HPLIQKNRRVVLASFLLLLLG 125
PLI + S ++++LG
Sbjct: 184 FVRPLIAAKNPKIAVSKMMMVLG 206
>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
Length = 772
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 35 PLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTSSQWSFSTISSSTQR 94
P+ +R ++ E++ + +E E+G +P S +WS S ++ ++
Sbjct: 147 PMKKRKRREYQSPSEEESEP---EAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKK 203
Query: 95 SYNTCCSWTQHPLIQK 110
C SW + QK
Sbjct: 204 E---CWSWESYLEEQK 216
>gi|206597541 solute carrier family 39 (metal ion transporter),
member 5 [Homo sapiens]
Length = 540
Score = 27.3 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 112 RRVVLASFLLLLLGLVLILVGVGLEATPSP------GVSSAIFFVPGFLLLVPGV 160
RR++L S + LGL ++GVGL P P GV++ +F + ++P +
Sbjct: 443 RRLLLLSLVSGALGLGGAVLGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPAL 497
>gi|206597539 solute carrier family 39 (metal ion transporter),
member 5 [Homo sapiens]
Length = 540
Score = 27.3 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 112 RRVVLASFLLLLLGLVLILVGVGLEATPSP------GVSSAIFFVPGFLLLVPGV 160
RR++L S + LGL ++GVGL P P GV++ +F + ++P +
Sbjct: 443 RRLLLLSLVSGALGLGGAVLGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPAL 497
>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
Length = 738
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 35 PLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTSSQWSFSTISSSTQR 94
P+ +R ++ E++ + +E E+G +P S +WS S ++ ++
Sbjct: 147 PMKKRKRREYQSPSEEESEP---EAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKK 203
Query: 95 SYNTCCSWTQHPLIQK 110
C SW + QK
Sbjct: 204 E---CWSWESYLEEQK 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,002,244
Number of Sequences: 37866
Number of extensions: 352058
Number of successful extensions: 1163
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 30
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.