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Search of human proteins with 239751241
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
(617 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 1283 0.0
gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 481 e-136
gi|239756746 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 476 e-134
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 136 7e-32
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 130 5e-30
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 130 5e-30
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 130 5e-30
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 129 6e-30
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 129 6e-30
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 129 6e-30
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 127 4e-29
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 125 1e-28
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 122 7e-28
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 122 7e-28
gi|7661586 TBC1 domain family, member 29 [Homo sapiens] 59 1e-08
gi|151108489 TBC1 domain family, member 28 [Homo sapiens] 54 6e-07
gi|239756750 PREDICTED: similar to TBC1 domain family, member 28... 51 4e-06
gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens] 48 3e-05
gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens] 48 3e-05
gi|148235002 TBC1 domain family, member 26 [Homo sapiens] 47 4e-05
gi|239745813 PREDICTED: hypothetical protein XP_002343595 [Homo ... 46 9e-05
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 45 2e-04
gi|164565381 TBC1 domain family, member 14 isoform b [Homo sapiens] 42 0.002
gi|164565368 TBC1 domain family, member 14 isoform a [Homo sapiens] 42 0.002
gi|164565366 TBC1 domain family, member 14 isoform a [Homo sapiens] 42 0.002
gi|239756790 PREDICTED: similar to hCG1991532 [Homo sapiens] 41 0.003
gi|29648315 small G protein signaling modulator 3 [Homo sapiens] 39 0.011
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 39 0.018
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 38 0.024
gi|148806902 TBC1 domain family, member 12 [Homo sapiens] 35 0.16
>gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 617
Score = 1283 bits (3319), Expect = 0.0
Identities = 617/617 (100%), Positives = 617/617 (100%)
Query: 1 MGLTCLASIWGSGGSRSGVLWSSRVLQSLWMTLSCRMEMDEHPDILPTQGQGNIIITKYE 60
MGLTCLASIWGSGGSRSGVLWSSRVLQSLWMTLSCRMEMDEHPDILPTQGQGNIIITKYE
Sbjct: 1 MGLTCLASIWGSGGSRSGVLWSSRVLQSLWMTLSCRMEMDEHPDILPTQGQGNIIITKYE 60
Query: 61 QDHRVKTGSPCRQDPKPFTLPLSPWPSLGHRDAELGQQWTQSMSVLTSGNSPVVSGLCGS 120
QDHRVKTGSPCRQDPKPFTLPLSPWPSLGHRDAELGQQWTQSMSVLTSGNSPVVSGLCGS
Sbjct: 61 QDHRVKTGSPCRQDPKPFTLPLSPWPSLGHRDAELGQQWTQSMSVLTSGNSPVVSGLCGS 120
Query: 121 WCLVGISSTGRPLPSFPVPSPGLRLRVDGEGWGPLMDEDGSWPRQPLSRRRTLCVVVSTL 180
WCLVGISSTGRPLPSFPVPSPGLRLRVDGEGWGPLMDEDGSWPRQPLSRRRTLCVVVSTL
Sbjct: 121 WCLVGISSTGRPLPSFPVPSPGLRLRVDGEGWGPLMDEDGSWPRQPLSRRRTLCVVVSTL 180
Query: 181 PPALVEVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFP 240
PPALVEVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFP
Sbjct: 181 PPALVEVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFP 240
Query: 241 KIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIH 300
KIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIH
Sbjct: 241 KIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIH 300
Query: 301 REHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHC 360
REHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHC
Sbjct: 301 REHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHC 360
Query: 361 CTIAWGLQSKAGKNSCTSRASGDFRAHPRTESLMXHLPAQKRRNKGQRTASKSWKEMKYQ 420
CTIAWGLQSKAGKNSCTSRASGDFRAHPRTESLM HLPAQKRRNKGQRTASKSWKEMKYQ
Sbjct: 361 CTIAWGLQSKAGKNSCTSRASGDFRAHPRTESLMXHLPAQKRRNKGQRTASKSWKEMKYQ 420
Query: 421 PVFSLDLPLPPCHALGPFMVKPGGGPPAPAPEGESPKNCCVHVPFLEPHLHVPTYLLDMP 480
PVFSLDLPLPPCHALGPFMVKPGGGPPAPAPEGESPKNCCVHVPFLEPHLHVPTYLLDMP
Sbjct: 421 PVFSLDLPLPPCHALGPFMVKPGGGPPAPAPEGESPKNCCVHVPFLEPHLHVPTYLLDMP 480
Query: 481 EPLSLSSRSRLSTAADTGCGSTTLRGAGDGCFPAALQFAEFNTYARGPVFFTWKVMSLID 540
EPLSLSSRSRLSTAADTGCGSTTLRGAGDGCFPAALQFAEFNTYARGPVFFTWKVMSLID
Sbjct: 481 EPLSLSSRSRLSTAADTGCGSTTLRGAGDGCFPAALQFAEFNTYARGPVFFTWKVMSLID 540
Query: 541 LRACLCSQLWECRQWSPLIIVSQSFKDPPLGAAIGKESCPITDNELHFLERRPLSPKLVQ 600
LRACLCSQLWECRQWSPLIIVSQSFKDPPLGAAIGKESCPITDNELHFLERRPLSPKLVQ
Sbjct: 541 LRACLCSQLWECRQWSPLIIVSQSFKDPPLGAAIGKESCPITDNELHFLERRPLSPKLVQ 600
Query: 601 ALGVAGQCLAVQLYLRT 617
ALGVAGQCLAVQLYLRT
Sbjct: 601 ALGVAGQCLAVQLYLRT 617
>gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 339
Score = 481 bits (1238), Expect = e-136
Identities = 235/237 (99%), Positives = 236/237 (99%)
Query: 186 EVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFPKIMRQ 245
EVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFPKIMRQ
Sbjct: 56 EVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFPKIMRQ 115
Query: 246 LGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHREHLM 305
LGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHREHLM
Sbjct: 116 LGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHREHLM 175
Query: 306 KLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAW 365
KLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAW
Sbjct: 176 KLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAW 235
Query: 366 GLQSKAGKNSCTSRASGDFRAHPRTESLMXHLPAQKRRNKGQRTASKSWKEMKYQPV 422
GLQSKAGKNSCTSRASGDFRAHPRTESLM HLPAQKRRNKGQRTASKSWKEMKY P+
Sbjct: 236 GLQSKAGKNSCTSRASGDFRAHPRTESLMXHLPAQKRRNKGQRTASKSWKEMKYPPL 292
Score = 103 bits (258), Expect = 4e-22
Identities = 50/55 (90%), Positives = 51/55 (92%)
Query: 563 QSFKDPPLGAAIGKESCPITDNELHFLERRPLSPKLVQALGVAGQCLAVQLYLRT 617
+ K PPLG AIGKESCPITDNELHFLERRPLSPKLVQALGVAGQCLAVQLYLRT
Sbjct: 285 KEMKYPPLGVAIGKESCPITDNELHFLERRPLSPKLVQALGVAGQCLAVQLYLRT 339
Score = 57.4 bits (137), Expect = 4e-08
Identities = 29/39 (74%), Positives = 29/39 (74%), Gaps = 7/39 (17%)
Query: 37 MEMDEHPDILPTQGQGNIIITKYEQDHRVKTGSPCRQDP 75
MEMDEHPDILPTQGQGNIIITKYEQ P QDP
Sbjct: 1 MEMDEHPDILPTQGQGNIIITKYEQ-------GPKAQDP 32
>gi|239756746 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 339
Score = 476 bits (1226), Expect = e-134
Identities = 234/237 (98%), Positives = 235/237 (99%)
Query: 186 EVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFPKIMRQ 245
EVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFPKIMRQ
Sbjct: 56 EVGYHRDLSRNTAVLLYLPEEDAFWVAGSAAGRPNTAQLRKLLSHQEQVLHKSFPKIMRQ 115
Query: 246 LGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHREHLM 305
LGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHREHLM
Sbjct: 116 LGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHREHLM 175
Query: 306 KLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAW 365
KLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAH CTIAW
Sbjct: 176 KLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHRCTIAW 235
Query: 366 GLQSKAGKNSCTSRASGDFRAHPRTESLMXHLPAQKRRNKGQRTASKSWKEMKYQPV 422
GLQSKAGKNSCTSRASGDFRAHPRTESLM HLPAQKRRNKGQRTASKSWKEMKY P+
Sbjct: 236 GLQSKAGKNSCTSRASGDFRAHPRTESLMXHLPAQKRRNKGQRTASKSWKEMKYPPL 292
Score = 105 bits (262), Expect = 1e-22
Identities = 51/55 (92%), Positives = 52/55 (94%)
Query: 563 QSFKDPPLGAAIGKESCPITDNELHFLERRPLSPKLVQALGVAGQCLAVQLYLRT 617
+ K PPLGAAIGKESCPITDNELHFLERRPLSPKLVQALGVAGQCLAVQLYLRT
Sbjct: 285 KEMKYPPLGAAIGKESCPITDNELHFLERRPLSPKLVQALGVAGQCLAVQLYLRT 339
Score = 57.4 bits (137), Expect = 4e-08
Identities = 29/39 (74%), Positives = 29/39 (74%), Gaps = 7/39 (17%)
Query: 37 MEMDEHPDILPTQGQGNIIITKYEQDHRVKTGSPCRQDP 75
MEMDEHPDILPTQGQGNIIITKYEQ P QDP
Sbjct: 1 MEMDEHPDILPTQGQGNIIITKYEQ-------GPKAQDP 32
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 136 bits (342), Expect = 7e-32
Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 12/196 (6%)
Query: 168 SRRRTLCVVVSTLPPALVEVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR------ 218
+++R L ++ EVGY RDLS TA+ LLYLPEEDAFW V A+ R
Sbjct: 164 AKQRELFYILLAYSEYNPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGF 223
Query: 219 --PNTAQLRKLLSHQEQVLHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLR 276
PN ++ L QE V+ KS PK M KEGLC + + L LL+ +DG S GLTLR
Sbjct: 224 HSPNGGTVQGLQDQQEHVVPKSQPKTMWHQDKEGLCGQCASLGCLLRNLIDGISLGLTLR 283
Query: 277 LWDVLILEGEQVLTAMAHASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQ 335
LWDV ++EGEQVL + + K+ ++ LMK S +W + + +WA+ D++VL++L+
Sbjct: 284 LWDVYLVEGEQVLMPITSIALKVQQKRLMKTSRCGLWARLRNQFFDTWAMNDDTVLKHLR 343
Query: 336 TSMKELTKKHWDLPSP 351
S K+LT+K DLP P
Sbjct: 344 ASTKKLTRKQGDLPPP 359
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 130 bits (326), Expect = 5e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S PK M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 130 bits (326), Expect = 5e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S PK M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 130 bits (326), Expect = 5e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S PK M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 129 bits (325), Expect = 6e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S PK M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 129 bits (325), Expect = 6e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S PK M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 129 bits (325), Expect = 6e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S PK M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 127 bits (318), Expect = 4e-29
Identities = 87/215 (40%), Positives = 117/215 (54%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLYLPEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S K M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 125 bits (314), Expect = 1e-28
Identities = 86/215 (40%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGR--------PNTAQLRKLLSHQEQV 234
EVGY RDLS A+ LLY PEEDAFW V A+ R PN ++ L QE V
Sbjct: 183 EVGYCRDLSHIAALFLLYFPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHV 242
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ S K M K+ LC + S L L++ +DG S GLTLRLWDV ++EGEQ L +
Sbjct: 243 VATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITR 302
Query: 295 ASFKIHREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPES 353
+FK+ ++ L K S W F R +WA ++++VL++L+ SMK+LT+K DLP P
Sbjct: 303 IAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAK 362
Query: 354 LLQNAHCCTIAWGLQSKAGKNSCTSRASGDFRAHP 388
Q + S+ GK C GD +A P
Sbjct: 363 PEQGSSASRPV--PASRGGKTLC----KGDRQAPP 391
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 122 bits (307), Expect = 7e-28
Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 186 EVGYHRDLSRNTAVLL-YLPEEDAFWVAGSAAGRPNTA----------QLRKLLSHQEQV 234
EVGY + +S+ TA+LL Y+ EEDAFW P A +L + H E++
Sbjct: 182 EVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKI 241
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
L+K K+ + L + + + QCFLD F L LR+WD+ I EGE+VLTAM++
Sbjct: 242 LNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFTLNLRIWDIYIFEGERVLTAMSY 301
Query: 295 ASFKIHREHLMKLSWSTVWE-FQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSP 351
K+H++HLMKLS + E FQE L++ + ED+ V+ LQ SM EL + DLP P
Sbjct: 302 TILKLHKKHLMKLSMEELVEFFQETLAKDFFFEDDFVIEQLQISMTELKRAKLDLPEP 359
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 122 bits (307), Expect = 7e-28
Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 186 EVGYHRDLSRNTAVLL-YLPEEDAFWVAGSAAGRPNTA----------QLRKLLSHQEQV 234
EVGY + +S+ TA+LL Y+ EEDAFW P A +L + H E++
Sbjct: 199 EVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKI 258
Query: 235 LHKSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
L+K K+ + L + + + QCFLD F L LR+WD+ I EGE+VLTAM++
Sbjct: 259 LNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFTLNLRIWDIYIFEGERVLTAMSY 318
Query: 295 ASFKIHREHLMKLSWSTVWE-FQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSP 351
K+H++HLMKLS + E FQE L++ + ED+ V+ LQ SM EL + DLP P
Sbjct: 319 TILKLHKKHLMKLSMEELVEFFQETLAKDFFFEDDFVIEQLQISMTELKRAKLDLPEP 376
>gi|7661586 TBC1 domain family, member 29 [Homo sapiens]
Length = 150
Score = 59.3 bits (142), Expect = 1e-08
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 243 MRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHR- 301
M L KEGLC +GS + LL+ DG S GLT LWD+ +LEGEQ+L + +FK+ R
Sbjct: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
Query: 302 --EHLMKLSW 309
E K +W
Sbjct: 61 LYEETNKETW 70
>gi|151108489 TBC1 domain family, member 28 [Homo sapiens]
Length = 210
Score = 53.5 bits (127), Expect = 6e-07
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 18/81 (22%)
Query: 37 MEMDEHPDILPTQGQGNIIITKYEQDHRVKTGSPCRQDPKPFTLPLSPWPSLGHRDAELG 96
MEMDE PD LP QGQGNIIITKYEQ HR LGH ++
Sbjct: 1 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAA-----------------VDLGHEQVDV- 42
Query: 97 QQWTQSMSVLTSGNSPVVSGL 117
+++T ++ ++ P VS L
Sbjct: 43 RKYTNNLGIVHEMELPRVSAL 63
>gi|239756750 PREDICTED: similar to TBC1 domain family, member 28
[Homo sapiens]
Length = 234
Score = 50.8 bits (120), Expect = 4e-06
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 20/87 (22%)
Query: 33 LSC--RMEMDEHPDILPTQGQGNIIITKYEQDHRVKTGSPCRQDPKPFTLPLSPWPSLGH 90
LSC RMEMD P LP QGQGNIIITKYEQ HR LGH
Sbjct: 19 LSCQGRMEMDGDPYNLPAQGQGNIIITKYEQGHRAGAA-----------------VDLGH 61
Query: 91 RDAELGQQWTQSMSVLTSGNSPVVSGL 117
++ +++T ++ ++ P VS L
Sbjct: 62 EQVDV-RKYTNNLGIVHEMELPHVSAL 87
>gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens]
Length = 963
Score = 47.8 bits (112), Expect = 3e-05
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGRPNTAQLRKLLSHQ------EQVLH 236
++GY + L+R AV LLYL +EDAFW V P + LL Q ++
Sbjct: 748 DIGYCQGLNRLVAVALLYLEQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLMS 807
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTR--LLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ P++ E ++ +++T L F+D + ++WD + EG +V+ A
Sbjct: 808 EKLPRLHGHF--EQYKVDYTLITFNWFLVVFVDSVVSDILFKIWDSFLYEGPKVIFRFAL 865
Query: 295 ASFKIHREHLMKL 307
A FK E ++KL
Sbjct: 866 ALFKYKEEEILKL 878
>gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens]
Length = 914
Score = 47.8 bits (112), Expect = 3e-05
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 186 EVGYHRDLSRNTAV-LLYLPEEDAFW--VAGSAAGRPNTAQLRKLLSHQ------EQVLH 236
++GY + L+R AV LLYL +EDAFW V P + LL Q ++
Sbjct: 748 DIGYCQGLNRLVAVALLYLEQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLMS 807
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTR--LLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAH 294
+ P++ E ++ +++T L F+D + ++WD + EG +V+ A
Sbjct: 808 EKLPRLHGHF--EQYKVDYTLITFNWFLVVFVDSVVSDILFKIWDSFLYEGPKVIFRFAL 865
Query: 295 ASFKIHREHLMKL 307
A FK E ++KL
Sbjct: 866 ALFKYKEEEILKL 878
>gi|148235002 TBC1 domain family, member 26 [Homo sapiens]
Length = 250
Score = 47.4 bits (111), Expect = 4e-05
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 37 MEMDEHPDILPTQGQGNIIITKYEQDHRVKTGSPCRQDPKPFTLPLSPWPSLGHRDAELG 96
MEMD P LP QGQGNIIITKYEQ HR LGH ++
Sbjct: 1 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAA-----------------VDLGHEQVDV- 42
Query: 97 QQWTQSMSVLTSGNSPVVSGL 117
+++T ++ ++ P VS L
Sbjct: 43 RKYTNNLGIVHEMELPRVSAL 63
Score = 47.4 bits (111), Expect = 4e-05
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 169 RRRTLCVVVSTLPPALVEVGYHRDLSRNTAVLLY-LPEEDAFW 210
+++ LC ++ EVGYHRDLSR TA+LL LPEEDAFW
Sbjct: 166 KQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFW 208
>gi|239745813 PREDICTED: hypothetical protein XP_002343595 [Homo
sapiens]
Length = 279
Score = 46.2 bits (108), Expect = 9e-05
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 302 EHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPE 352
+HLMK S S +W FQ++ Q+WAL+ ++VLR+LQ S+ K+ P PE
Sbjct: 110 KHLMKASRSGLWARFQDQFPQTWALDSDAVLRHLQASVLSKPKQGSSAPRPE 161
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 45.4 bits (106), Expect = 2e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 309 WSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAWGLQ 368
W+ W R +WA +D++VL++L+ SMK+LT+K DLP P Q +
Sbjct: 196 WARFWN---RFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPV--PA 250
Query: 369 SKAGKNSCTSRASGDFRAHP 388
S+ GK C GD +A P
Sbjct: 251 SRGGKTLC----KGDRQAPP 266
>gi|164565381 TBC1 domain family, member 14 isoform b [Homo sapiens]
Length = 413
Score = 41.6 bits (96), Expect = 0.002
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 186 EVGYHRDLSRNTAVL-LYLPEEDAFWVAGSAAGRP--------NTAQLRKLLSHQEQVLH 236
+VGY + +S AVL L L DAF + +P + + + E
Sbjct: 223 DVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFE 282
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHAS 296
++ PK+ K L + ++ + + L R+WDV +GE+ L A
Sbjct: 283 ENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGI 342
Query: 297 FKIHREHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHW 346
K+ + L K+ + + +F RL + E+ + ++ T + K W
Sbjct: 343 LKLFEDILTKMDFIHMAQFLTRLPEDLPAEE--LFASIATIQMQSRNKKW 390
>gi|164565368 TBC1 domain family, member 14 isoform a [Homo sapiens]
Length = 693
Score = 41.6 bits (96), Expect = 0.002
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 186 EVGYHRDLSRNTAVL-LYLPEEDAFWVAGSAAGRP--------NTAQLRKLLSHQEQVLH 236
+VGY + +S AVL L L DAF + +P + + + E
Sbjct: 503 DVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFE 562
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHAS 296
++ PK+ K L + ++ + + L R+WDV +GE+ L A
Sbjct: 563 ENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGI 622
Query: 297 FKIHREHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHW 346
K+ + L K+ + + +F RL + E+ + ++ T + K W
Sbjct: 623 LKLFEDILTKMDFIHMAQFLTRLPEDLPAEE--LFASIATIQMQSRNKKW 670
>gi|164565366 TBC1 domain family, member 14 isoform a [Homo sapiens]
Length = 693
Score = 41.6 bits (96), Expect = 0.002
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 186 EVGYHRDLSRNTAVL-LYLPEEDAFWVAGSAAGRP--------NTAQLRKLLSHQEQVLH 236
+VGY + +S AVL L L DAF + +P + + + E
Sbjct: 503 DVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFE 562
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHAS 296
++ PK+ K L + ++ + + L R+WDV +GE+ L A
Sbjct: 563 ENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGI 622
Query: 297 FKIHREHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHW 346
K+ + L K+ + + +F RL + E+ + ++ T + K W
Sbjct: 623 LKLFEDILTKMDFIHMAQFLTRLPEDLPAEE--LFASIATIQMQSRNKKW 670
>gi|239756790 PREDICTED: similar to hCG1991532 [Homo sapiens]
Length = 167
Score = 41.2 bits (95), Expect = 0.003
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 305 MKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPE 352
MK S S +W FQ++ Q+WAL+ ++VLR+LQ S+ K+ P PE
Sbjct: 1 MKASRSGLWARFQDQFPQTWALDSDAVLRHLQASVLSKPKQGSSAPRPE 49
>gi|29648315 small G protein signaling modulator 3 [Homo sapiens]
Length = 749
Score = 39.3 bits (90), Expect = 0.011
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 186 EVGYHRDLSRNTA-VLLYLPEEDAFWVAGSAAGR--PNTAQLRKLLSHQ--EQVLHKSFP 240
E+GY + A +LL+L EEDAFW+ + P + LL Q ++VL
Sbjct: 197 EIGYCQGTGMVAACLLLFLEEEDAFWMMSAIIEDLLPASYFSTTLLGVQTDQRVLRHLIV 256
Query: 241 KIMRQLGK--EGLCIEGSMLTR--LLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHAS 296
+ + +L K + IE S++T L F L LR+WD+ EG +VL +
Sbjct: 257 QYLPRLDKLLQEHDIELSLITLHWFLTAFASVVDIKLLLRIWDLFFYEGSRVLFQLTLGM 316
Query: 297 FKIHREHLMK 306
+ E L++
Sbjct: 317 LHLKEEELIQ 326
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 38.5 bits (88), Expect = 0.018
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 430 PPCHALGPFM-----VKPGGGPPAPAPEGESPKNCCVHVPFLEPHLHVPT 474
PP HA P + PG GPP P P + +H P L PH+H P+
Sbjct: 415 PPHHASNPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPS 464
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 38.1 bits (87), Expect = 0.024
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 187 VGYHRDLSRNTAVLLYLPEED--AFW--VAGSAAGRPNTAQLRKLLSHQ------EQVLH 236
+GY + L+R A+ L + EE+ AFW VA P L + Q + +L
Sbjct: 709 IGYCQGLNRLAAIALLVLEEEESAFWCLVAIVETIMPADYYCNTLTASQVDQRVLQDLLS 768
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEG 285
+ P++M LG+ + + L F D + LR+WD + EG
Sbjct: 769 EKLPRLMAHLGQHHVDLSLVTFNWFLVVFADSLISNILLRVWDAFLYEG 817
>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
Length = 775
Score = 35.4 bits (80), Expect = 0.16
Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 186 EVGYHRDLSRNTAVL-LYLPEEDAFWVAGSAAGRP--------NTAQLRKLLSHQEQVLH 236
+VGY + +S AVL L L E DAF + +P + + + K + E
Sbjct: 584 DVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFE 643
Query: 237 KSFPKIMRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHAS 296
++ K+ L + ++ + + L R+WDV +GE+ L
Sbjct: 644 ENLSKLFLHFKSYSLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGI 703
Query: 297 FKIHREHLMKLSWSTVWEFQERLSQ 321
+++ + L+++ + + +F +L +
Sbjct: 704 LRLYEDILLQMDFIHIAQFLTKLPE 728
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,053,193
Number of Sequences: 37866
Number of extensions: 1498598
Number of successful extensions: 4978
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4883
Number of HSP's gapped (non-prelim): 88
length of query: 617
length of database: 18,247,518
effective HSP length: 108
effective length of query: 509
effective length of database: 14,157,990
effective search space: 7206416910
effective search space used: 7206416910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.