Search of human proteins with 239750499

Search of human proteins with 239750499

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750499 PREDICTED: hypothetical protein XP_002347422 [Homo
sapiens]
         (90 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750499 PREDICTED: hypothetical protein XP_002347422 [Homo ...   182   4e-47
gi|239744796 PREDICTED: hypothetical protein XP_002343273 [Homo ...   182   4e-47
gi|239755976 PREDICTED: hypothetical protein [Homo sapiens]           157   1e-39
gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]      28   2.0  
gi|16975496 cortactin binding protein 2 [Homo sapiens]                 26   7.7  
gi|4501867 aconitase 2, mitochondrial precursor [Homo sapiens]         25   10.0 

>gi|239750499 PREDICTED: hypothetical protein XP_002347422 [Homo
          sapiens]
          Length = 90

 Score =  182 bits (463), Expect = 4e-47
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
          MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL
Sbjct: 1  MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60

Query: 61 NHAYDLSWGSFSPSLSLLRFYHTLLHRKPG 90
          NHAYDLSWGSFSPSLSLLRFYHTLLHRKPG
Sbjct: 61 NHAYDLSWGSFSPSLSLLRFYHTLLHRKPG 90


>gi|239744796 PREDICTED: hypothetical protein XP_002343273 [Homo
          sapiens]
          Length = 90

 Score =  182 bits (463), Expect = 4e-47
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
          MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL
Sbjct: 1  MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60

Query: 61 NHAYDLSWGSFSPSLSLLRFYHTLLHRKPG 90
          NHAYDLSWGSFSPSLSLLRFYHTLLHRKPG
Sbjct: 61 NHAYDLSWGSFSPSLSLLRFYHTLLHRKPG 90


>gi|239755976 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 380

 Score =  157 bits (398), Expect = 1e-39
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
          MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL
Sbjct: 1  MLSSAAGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60

Query: 61 NHAYDLSWGSFSPSLSLLR 79
          NHAYDLSWGSFSPSLSLLR
Sbjct: 61 NHAYDLSWGSFSPSLSLLR 79


>gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]
          Length = 570

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 6   AGLARSYAVPSENKNSGLLVQKVLRISKLTSGALAQHGPG 45
           A  AR   VPS    SGLLV KV  +   T+G+ + HG G
Sbjct: 513 ANTARHSLVPSYEGGSGLLVGKVGGLR--TAGSRSSHGGG 550


>gi|16975496 cortactin binding protein 2 [Homo sapiens]
          Length = 1663

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 33   KLTSGALAQHGPGATDATCHEAVLLCSLNHAYDLSWGSFSPSLS 76
            +++ G +     G+ D  C   +  C+LN     SW  FS ++S
Sbjct: 973  RISVGEIEPSNYGSDDLECENTI--CALNIRKQTSWDDFSKAVS 1014


>gi|4501867 aconitase 2, mitochondrial precursor [Homo sapiens]
          Length = 780

 Score = 25.4 bits (54), Expect = 10.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 16  SENKNSGLLVQKVLRISKLTSGALAQHGPGATDATCHEAVLLCSL 60
           S  K+  L V  +L +   T   +  HGPG    +C     +C++
Sbjct: 242 SSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNM 286


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,564,850
Number of Sequences: 37866
Number of extensions: 133604
Number of successful extensions: 271
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.