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Search of human proteins with 239750109
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C.
elegans) [Homo sapiens]
(529 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 1119 0.0
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 1063 0.0
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 449 e-126
gi|45580709 unc-93 homolog B1 [Homo sapiens] 418 e-117
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 390 e-108
gi|110832843 TBP-associated factor 4 [Homo sapiens] 51 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 1e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 49 1e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 48 3e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 3e-05
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 47 3e-05
gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens] 47 4e-05
gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens] 47 4e-05
gi|24308352 DMRT-like family B with proline-rich C-terminal, 1 [... 47 4e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 6e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 46 7e-05
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 46 1e-04
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 45 1e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 2e-04
gi|22027541 programmed cell death 7 [Homo sapiens] 44 4e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 44 5e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 44 5e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 44 5e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 44 5e-04
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 1119 bits (2894), Expect = 0.0
Identities = 529/529 (100%), Positives = 529/529 (100%)
Query: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA
Sbjct: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
Query: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM
Sbjct: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
Query: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA
Sbjct: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
Query: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAE 240
EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAE
Sbjct: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAE 240
Query: 241 TLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMS 300
TLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMS
Sbjct: 241 TLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMS 300
Query: 301 NKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSV 360
NKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSV
Sbjct: 301 NKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSV 360
Query: 361 GPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHP 420
GPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHP
Sbjct: 361 GPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHP 420
Query: 421 PGACVGILGPPATIPASDRVYFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPE 480
PGACVGILGPPATIPASDRVYFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPE
Sbjct: 421 PGACVGILGPPATIPASDRVYFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPE 480
Query: 481 ERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHSPQPLYP 529
ERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHSPQPLYP
Sbjct: 481 ERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHSPQPLYP 529
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 1063 bits (2749), Expect = 0.0
Identities = 500/503 (99%), Positives = 502/503 (99%)
Query: 27 VAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNNTGLSTLLGILYKDKE 86
+AGAGVHLLLTFILFFWAPVPRVLQH WILCVAAALWGVGSALNNTGLSTLLGILY+DKE
Sbjct: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
Query: 87 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 146
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP
Sbjct: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
Query: 147 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 206
QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE
Sbjct: 121 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 180
Query: 207 QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI 266
QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI
Sbjct: 181 QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI 240
Query: 267 LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 326
LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR
Sbjct: 241 LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 300
Query: 327 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 386
LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG
Sbjct: 301 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 360
Query: 387 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 446
EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV
Sbjct: 361 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 420
Query: 447 GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA 506
GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA
Sbjct: 421 GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA 480
Query: 507 PSCTPAGPGLAHTIPHSPQPLYP 529
PSCTPAGPGLAHTIPHSPQPLYP
Sbjct: 481 PSCTPAGPGLAHTIPHSPQPLYP 503
>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 312
Score = 449 bits (1154), Expect = e-126
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA
Sbjct: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
Query: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM
Sbjct: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
Query: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA
Sbjct: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
Query: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEH 217
EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEH
Sbjct: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEH 217
Score = 106 bits (265), Expect = 5e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 448 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 496
LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED
Sbjct: 218 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 266
>gi|45580709 unc-93 homolog B1 [Homo sapiens]
Length = 597
Score = 418 bits (1074), Expect = e-117
Identities = 206/217 (94%), Positives = 210/217 (96%), Gaps = 1/217 (0%)
Query: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
+AYSLG SAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWIL VAA
Sbjct: 380 VAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAA 439
Query: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
ALWGVGSALN TGLSTLLGILY+DKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+
Sbjct: 440 ALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAV 499
Query: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG 179
LLVTLVAAAVSYLRMEQKLRRGVAP QPRIPRPQHKVRGYRYL EDNS+ESDAE EHGDG
Sbjct: 500 LLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDG 559
Query: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEE 216
AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQ GDGPEE
Sbjct: 560 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEE 596
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 390 bits (1003), Expect = e-108
Identities = 213/294 (72%), Positives = 222/294 (75%), Gaps = 19/294 (6%)
Query: 3 YSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAAL 62
YSLG SA SLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWIL VAAAL
Sbjct: 22 YSLGASATSLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAAL 81
Query: 63 WGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLL 122
W VGS+LN TGLSTLLGILY+DKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+LL
Sbjct: 82 WVVGSSLNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLALLL 141
Query: 123 VTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG-- 179
VTLVAA VSYLRMEQKLRRGVAP QPRIPRPQHKVRGYRYL EDNS+ESDAE + GDG
Sbjct: 142 VTLVAATVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGDLGDGEE 201
Query: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFE--N 237
AE EAPPAGPRPGPEPAGLGRRPCPYEQAQ G G P A +
Sbjct: 202 AEAEAPPAGPRPGPEPAGLGRRPCPYEQAQGAMGRRSSEGPPGPRTQPPSSPASVYHVLG 261
Query: 238 TAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPR 291
+ LR C PL LP VG P PR + + PQ PPR
Sbjct: 262 RGDPLRV------------PRCLQRPLSPLPHVGDAP-PRAW-VTSGLPQPPPR 301
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 51.2 bits (121), Expect = 2e-06
Identities = 80/291 (27%), Positives = 101/291 (34%), Gaps = 47/291 (16%)
Query: 177 GDGAEEEAPPAGPRP----GPEPAGLGRRPCPYEQAQR-GDGPEEHPLQGGVEPWEPLGQ 231
G G + PP+ RP GP P RP P A P + G EP P G
Sbjct: 99 GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEP-APAGP 157
Query: 232 AQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVT-----ALCTSYP 286
A+ A L+ R G G G P P PA GPG T AL S+
Sbjct: 158 AKPAGPAA-----LAARAGPGPGPGPGPGPGPGPGKPA---GPGAAQTLNGSAALLNSHH 209
Query: 287 QGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGV 346
P + L +L P PG ++ P + A A P A + P P
Sbjct: 210 AAAP--AVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA-APPAPAAPSPPAAPAPAAP 266
Query: 347 GSAAPYWGRGEVSVG-PAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRD------RGG 399
+A P ++ P P PP A P +P P +GG+AG GG
Sbjct: 267 AAAPPPPPPAPATLARPPGHPAGPPTAAPAVP-----PPAAAQNGGSAGAAPAPAPAAGG 321
Query: 400 CDGVAGPPWVQRARQTP-------------EAHPPGACVGILGPPATIPAS 437
GV+G P A P +A PP A PA+ AS
Sbjct: 322 PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAAS 372
Score = 36.2 bits (82), Expect = 0.076
Identities = 71/271 (26%), Positives = 85/271 (31%), Gaps = 68/271 (25%)
Query: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTA 239
A E PAGP PA L R P G GP P G +P P G AQ +A
Sbjct: 148 AGPEPAPAGPAKPAGPAALAARAGPGP----GPGPGPGPGPGPGKPAGP-GAAQTLNGSA 202
Query: 240 ETLRA------------------------------LSTRPSAGAGS-----GSSCDPAPL 264
L + + T P GA + S AP
Sbjct: 203 ALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPA 262
Query: 265 QILPAVGRGPGPRVTALCT---SYPQGPPRATIFL------QKMSNKEILYCPYWGVPGR 315
PA P P A +P GPP A + Q + P G
Sbjct: 263 PAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP 322
Query: 316 GGRSA-PGMHARLARPLGAV-------VTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPF 367
G S PG A A P V V Q + ++ P + +GP Q
Sbjct: 323 AGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGA 382
Query: 368 LP-PEAPPPIPACLCQPQPGEGSG---GAAG 394
LP P A PP P PG +G GAAG
Sbjct: 383 LPSPAAVPP-------PAPGTPTGLPKGAAG 406
Score = 32.7 bits (73), Expect = 0.84
Identities = 54/200 (27%), Positives = 61/200 (30%), Gaps = 49/200 (24%)
Query: 321 PGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACL 380
P + A A LG V G G G AAP G P AP P PA
Sbjct: 48 PEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGA-------------PGAAPEPPPAGR 94
Query: 381 CQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRV 440
+P G G R GPP +R PP A L PP A
Sbjct: 95 ARP-------GGGGPQR------PGPPSPRRPLVPAGPAPPAAK---LRPPPEGSAG--- 135
Query: 441 YFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGP 500
SC A A P P P + PA ++ GP
Sbjct: 136 --------SCAPVPAAAAVAAGP---------EPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 501 WEGHGAPSCTPAGPGLAHTI 520
G G PAGPG A T+
Sbjct: 179 GPGPGPGPGKPAGPGAAQTL 198
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 1e-05
Identities = 88/304 (28%), Positives = 106/304 (34%), Gaps = 64/304 (21%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGD--GAEEEAPPA-----GPRPGPEPAG 197
PP P PR Q V G+ + N E G G + PP GP+ P P G
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Query: 198 LGRRPCPYEQAQRGDG--PEEHPLQGGVEPWEPLGQ-----AQGFENTAETLRALSTRPS 250
G +GD P LQG P G+ G + A A +
Sbjct: 625 PG--------GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGD 676
Query: 251 AGAGSGSSCDPAPLQILPAVGRGPGPRVT--ALCTSYPQGPPRA--TIFLQKMSNKEILY 306
AGA P L P + G GP + P GPP A T LQ
Sbjct: 677 AGAPGERG--PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQ--------- 725
Query: 307 CPYWGVPG-RGGRSAPGMHARLARPLGAVVTG-PDLGGPQG----VGSAAPYWGRGEVS- 359
G+PG RGG +PG P G G P GP+G +G P G+
Sbjct: 726 ----GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE 781
Query: 360 ---------VGPAHQPFLPPEAPPPIPACLC-----QPQPG-EGSGGAAG-RDRGGCDGV 403
GP P E PP PA +PG +G GA G + GG GV
Sbjct: 782 GGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGV 841
Query: 404 AGPP 407
AGPP
Sbjct: 842 AGPP 845
Score = 40.4 bits (93), Expect = 0.004
Identities = 79/284 (27%), Positives = 89/284 (31%), Gaps = 60/284 (21%)
Query: 169 ESDAEDEHGDGAEEEAP----PAGPRPGPEPAG-LGRRPCPYEQAQRGDGPEEHPLQGGV 223
E A G E AP PAGP P G G R P RG E P + GV
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE--PGRDGV 529
Query: 224 EPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRG--PGPRVTAL 281
P P + P + G GS P P GR PGP
Sbjct: 530 -PGGP---------------GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGP----- 568
Query: 282 CTSYPQGPPRATIFLQKMSNKEILYCPYWGVPG----RGGRSAPGMHARLAR-------- 329
S P+G P F N G PG RGG PG +
Sbjct: 569 --SGPRGQPGVMGFPGPKGND--------GAPGKNGERGGPGGPGPQGPPGKNGETGPQG 618
Query: 330 PLGAVVTGPDLG--GPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGE 387
P G G D G GP G G G GP + P E P A G+
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTG----GPPGENGKPGEPGPKGDAGAPGAPGGK 674
Query: 388 GSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPP 431
G GA G G G+AG P ++ P G GPP
Sbjct: 675 GDAGAPGER--GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Score = 38.1 bits (87), Expect = 0.020
Identities = 80/269 (29%), Positives = 94/269 (34%), Gaps = 45/269 (16%)
Query: 186 PAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL 245
P P EP G G R P E+ + G P GG P P G QG + R
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP-PGGSGPAGPPG-PQGVKGE----RGS 865
Query: 246 STRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEIL 305
P A G+ P P P PGP P G P N
Sbjct: 866 PGGPGAAGFPGARGLPGP----PGSNGNPGP-------PGPSGSPGKDGPPGPAGNTGAP 914
Query: 306 YCPYWGVPG-------RGGRSAPGMHA--RLARPLG-AVVTGP-DLGGPQGV----GSAA 350
P GV G G + +PG PLG A +TG L GP G+ GS
Sbjct: 915 GSP--GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPG 972
Query: 351 PYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG-EGSGGAAGRD-RGGCDGVAGPPW 408
P +GE A+ L E PP P Q PG G+ G GRD G DG+ G
Sbjct: 973 PQGVKGESGKPGANG--LSGERGPPGP----QGLPGLAGTAGEPGRDGNPGSDGLPGRDG 1026
Query: 409 VQRAR-QTPEAHPPGA--CVGILGPPATI 434
+ E PGA G GPP +
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPV 1055
Score = 36.6 bits (83), Expect = 0.058
Identities = 53/175 (30%), Positives = 62/175 (35%), Gaps = 30/175 (17%)
Query: 247 TRPSAGAG-SGSSCDPAPLQI--------LPAVGRGPG-PRVTALCTSYPQGPPRATIFL 296
TRP G G G DP P I +P PG P +C S P GP
Sbjct: 96 TRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP------- 148
Query: 297 QKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRG 356
Q S + Y GV G PG A P G T G P G P G
Sbjct: 149 QNYSPQYDSYDVKSGVAVGGLAGYPGP-AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207
Query: 357 EVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRD-RGGCDGVAGPPWVQ 410
+ GP+ P P P PA G G +GR R G G+ GPP ++
Sbjct: 208 QA--GPSGPPGPPGAIGPSGPA---------GKDGESGRPGRPGERGLPGPPGIK 251
Score = 35.4 bits (80), Expect = 0.13
Identities = 79/287 (27%), Positives = 91/287 (31%), Gaps = 46/287 (16%)
Query: 178 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFEN 237
+G E PAG R P PAG P DG P G+ P P G +
Sbjct: 497 NGIPGEKGPAGERGAPGPAG----PRGAAGEPGRDGVPGGPGMRGM-PGSPGGPGSDGKP 551
Query: 238 TAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGR--------------GPGPRVTALCT 283
+ S RP SG P + G GPGP+
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKN 611
Query: 284 SY--PQGPPRATIFLQKMSNKEILYCP----YWGVPGRGGRSAPGMHARLARPLGAVVTG 337
PQGPP T +K P G+PG GG PG + + P G
Sbjct: 612 GETGPQGPPGPT---GPGGDKGDTGPPGPQGLQGLPGTGG--PPGENGKPGEP-GPKGDA 665
Query: 338 PDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGR-- 395
G P G G A RG G A P L A PP P G GAAG
Sbjct: 666 GAPGAPGGKGDAGAPGERGPP--GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723
Query: 396 ------DRGGCD-----GVAGPPWVQRARQTPEAHPPGACVGILGPP 431
+RGG G G P A P P G +GPP
Sbjct: 724 LQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Score = 33.9 bits (76), Expect = 0.38
Identities = 44/130 (33%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Query: 311 GVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQG-VGSAAPYWGRGEVS-VGPAHQPFL 368
G+PGR G S G R P GP G VG A RGE GPA P
Sbjct: 1020 GLPGRDG-SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGP 1078
Query: 369 PPEAPPPIPACLCQPQPGEGSGGAAG--RDRG-----GCDGVAGPPWVQRARQTPEAHPP 421
P P + G GAAG RG G G GP Q A +P P
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGP 1138
Query: 422 GACVGILGPP 431
VG GPP
Sbjct: 1139 RGPVGPSGPP 1148
Score = 33.1 bits (74), Expect = 0.64
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 21/138 (15%)
Query: 311 GVPG-RGGRSAPGMHARLARPLGAVVTGPDLG-------GPQGVGSAAPYWG----RGEV 358
G PG G R APG R P A G D GP G A + G +GEV
Sbjct: 294 GAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV 353
Query: 359 SVGPAHQPF---LPPEAPPPIP----ACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQR 411
GPA P P + P P P P +G G+ G G+ G P +
Sbjct: 354 --GPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMG 411
Query: 412 ARQTPEAHPPGACVGILG 429
AR P G+ G
Sbjct: 412 ARGPPGPAGANGAPGLRG 429
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 48.5 bits (114), Expect = 1e-05
Identities = 108/423 (25%), Positives = 145/423 (34%), Gaps = 68/423 (16%)
Query: 151 PRPQHKVR---GYRYLEDNSEESDAEDEHGDGAEEEAPPA-GPRPG-PEPA---GLGRRP 202
P+ + KV G R+ + + G E+ P + GP P EPA L R P
Sbjct: 1026 PKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEPAPETSLERAP 1085
Query: 203 CPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQ-GFENTAETLRALSTRPSAGAGSGSSCDP 261
P +G E P G + P G + G E A P AG S
Sbjct: 1086 APSAVVSSRNGGETAP--GPLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGGR 1143
Query: 262 APLQILPAVGRGPGPRVTA----LCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGG 317
AP+ A G GPG V A + + PQ PP + + + P P
Sbjct: 1144 APVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAP 1203
Query: 318 RSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAH------------- 364
PG A +R G D G P P R + +GP
Sbjct: 1204 EGEPG--APDSRAGGDTALSGD-GDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRL 1260
Query: 365 QPFLPPEAPPPIPACLCQPQPGEGS-GGAAGRDRGGCDGVAGPPWV------QRARQTPE 417
LPP P P + P EG+ GAAG + GG G GP + + E
Sbjct: 1261 SLALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAGGA-GAPGPAEEDGEDEDEDEEEDEE 1319
Query: 418 AHPPGACVGILGP--------PATIPASDRVYFRATVGLSCDAHEKQAGGGADP------ 463
A PGA G GP P + ++D R GL K G +P
Sbjct: 1320 AAAPGAAAGPRGPGRARAAPVPVVVSSADADAARPLRGLL-----KSPRGADEPEDSELE 1374
Query: 464 LQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHS 523
+ V F + ++ +++TP + S + P EG PS PA P T PH
Sbjct: 1375 RKRKMVSFHGDVTVYLFDQETPTNELSVQ------APPEGDTDPSTPPAPP----TPPHP 1424
Query: 524 PQP 526
P
Sbjct: 1425 ATP 1427
Score = 32.3 bits (72), Expect = 1.1
Identities = 69/276 (25%), Positives = 89/276 (32%), Gaps = 47/276 (17%)
Query: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFE--- 236
A E P P RP P + + G L G W+P G+ G
Sbjct: 601 APSEVPQLVSETWASPLFPAPRPFPAQSSASGS----FLLSG----WDPEGRGAGETLAG 652
Query: 237 NTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFL 296
+ AE L T P +P + ++G GP R C + + + L
Sbjct: 653 DPAEVLGERGTAPWVEEEEEEEEGSSPGEDSSSLGGGPSRRGPLPCPLCSREGACSCLPL 712
Query: 297 QK------MSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAA 350
++ L CP+ R+ G A L P+ + P +G+AA
Sbjct: 713 ERGDAVAGWGGHPALGCPHPPEDDSSLRAERGSLADL--PMAPPASAPPEFLDPLMGAAA 770
Query: 351 P-YWGRGEVSVGPAHQPFLPPEAPPPIPAC--------------LCQPQPGEGSGG---- 391
P Y GRG PA P PP P PA L P P G G
Sbjct: 771 PQYPGRGPP---PAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETE 827
Query: 392 ----AAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
G GG G A V R R PE PGA
Sbjct: 828 TPFSPEGAFPGG--GAAEEEGVPRPRAPPEPPDPGA 861
Score = 29.3 bits (64), Expect = 9.3
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 143 VAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGR-R 201
VA P + P K Y + + G AEEE P PR PEP G R
Sbjct: 805 VASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPR-PRAPPEPPDPGAPR 863
Query: 202 PCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDP 261
P P GP E P E +LR TR G ++ +
Sbjct: 864 PPPDPGPLPLPGPREKP---------TFVVQVSTEQLLMSLREDVTRNLLGEKGATARET 914
Query: 262 APLQILPAVGRGPGPR 277
P + GRGPG R
Sbjct: 915 GPRK----AGRGPGNR 926
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 47.8 bits (112), Expect = 3e-05
Identities = 71/277 (25%), Positives = 96/277 (34%), Gaps = 35/277 (12%)
Query: 170 SDAEDEHGDGAEEEAPP--AGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPW- 226
S A++ + D ++EE+P AG GP P G + P + GP P QGG +P
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGP---PPQGGNKPQG 70
Query: 227 -EPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSY 285
P G+ QG + R+ + P G P P G+ GP +
Sbjct: 71 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG--GNR 128
Query: 286 PQGPPRATIFLQKMSNKEILYCPY------WGVPGRGGRSAPGMHARLARPLGAVVTG-- 337
PQGPP + P G P +GG G +P G G
Sbjct: 129 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGK 188
Query: 338 -----PDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPP-------EAPPPIPACLCQPQP 385
P G PQG P + S P +P PP + PPP P +PQ
Sbjct: 189 KPQGPPPPGKPQG---PPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 242
Query: 386 GEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPG 422
GG + GPP ++ PPG
Sbjct: 243 PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPG 279
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.8 bits (112), Expect = 3e-05
Identities = 95/389 (24%), Positives = 126/389 (32%), Gaps = 63/389 (16%)
Query: 184 APPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVE--PWEPLGQAQGFENTAET 241
+P P P P G P + +G P PL G P L +G T +
Sbjct: 1018 SPKGSPAATPFPKGASTPPAATPPSPKGS-PAATPLPKGAPTTPAATLPSPKGGPATP-S 1075
Query: 242 LRALSTRPSAGAGS--GSSCDPAPLQI-LPAVGRGPGPRVTALCTSYPQGPPRATIFLQK 298
L+ T P+A S G P+P +P P P+ L T +G P T
Sbjct: 1076 LKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPK-GGLATPPHKGAP-TTPAATP 1133
Query: 299 MSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEV 358
S K L P P +G + P A P G + T P G P + P G
Sbjct: 1134 PSPKGGLATP----PPKGAPTTPA--ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLA 1187
Query: 359 SVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEA 418
+ P P P PP L P P A G+A P + A TP A
Sbjct: 1188 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS-PKGAPTTPAA 1246
Query: 419 HPPGACVGILGPP----ATIPASDRVYFRATVGLSCDAHE-----------KQAGG---- 459
PP G PP T PA+ + GL+ H+ GG
Sbjct: 1247 TPPSPKGGPATPPPKGAPTPPAATPPSLKG--GLATPPHKGAPNPAVVTPPSPKGGPATS 1304
Query: 460 --------------------GADPLQGLKVPFLHPLLLWPEERDTPAMKS---SERLGED 496
G P +G P P + P + TP + + S + G
Sbjct: 1305 PPKGAPTPPAATPPSPKGSPGTPPPKGAPTP---PAVTPPSPKGTPTLPATTPSSKGGPT 1361
Query: 497 KWGPWEGHGAPSCTPAGPGLAHTIPHSPQ 525
EG P+ TP+ G P SP+
Sbjct: 1362 TPSSKEGPTPPAATPSHKGGPAMTPPSPK 1390
Score = 47.0 bits (110), Expect = 4e-05
Identities = 62/252 (24%), Positives = 80/252 (31%), Gaps = 21/252 (8%)
Query: 186 PAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL 245
PA P P P P + P+ P P P G
Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990
Query: 246 STRPSAGAGSGSSCD---PAPLQILPAVGRGPGPRVTALCTSYPQG---PPRATIFLQKM 299
+T PS G + P P + P P P+ + T +P+G PP AT K
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTP-----PSPKGSPAATPFPKGASTPPAATPPSPKG 1045
Query: 300 SNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVS 359
S P +G + P A L P G T G P + P G +
Sbjct: 1046 S-------PAATPLPKGAPTTPA--ATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Query: 360 VGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAH 419
P P +PP A PP P P +G+ G P + A TP A
Sbjct: 1097 PSPKGAP-MPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAAT 1155
Query: 420 PPGACVGILGPP 431
PP G+ PP
Sbjct: 1156 PPSPKGGLATPP 1167
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 47.4 bits (111), Expect = 3e-05
Identities = 62/243 (25%), Positives = 76/243 (31%), Gaps = 29/243 (11%)
Query: 154 QHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG 213
+H R L + S A+ H A+ PP+ P P G G P G
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP--GSF 243
Query: 214 PEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRG 273
P P G + P P + + GAG P P
Sbjct: 244 PPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPH 303
Query: 274 PGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGG----RSAPGMHARLAR 329
PG L P G L P+ G PG GG R PGM
Sbjct: 304 PGMSQMQLAHHGPHG----------------LGHPHAGPPGSGGQPPPRPPPGMPHPGPP 347
Query: 330 PLGAVVTGPDLGGPQG-VGSAAPYWGRGEVSVGPAHQPFLPPEAPP------PIPACLCQ 382
P+G GP G P G G P+ RG + P H PP PP P+P
Sbjct: 348 PMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPT 407
Query: 383 PQP 385
P+P
Sbjct: 408 PRP 410
Score = 30.8 bits (68), Expect = 3.2
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 185 PPAGPRPGPEPAGLGRRPCPYEQAQRGDGP-EEHPLQGGVEPWEPLGQAQGFENTAETLR 243
PP P PGP P G+ R P+ GP H ++G PL G+
Sbjct: 338 PPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGP----PPLMPPHGYTGPPRP-- 391
Query: 244 ALSTRPSAGAGSGSSCDPAPLQILPAVGRGP 274
P G G P P P RGP
Sbjct: 392 -----PPYGYQRGPLPPPRPTPRPPVPPRGP 417
>gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
Length = 457
Score = 47.0 bits (110), Expect = 4e-05
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 12 LLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNN 71
L G + + R V V GA H+ L W P H + V + LWGV A+
Sbjct: 309 LYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQ 365
Query: 72 TGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAA 129
T + L G+L+ ++ ++ F Y W+A+ F + G S+ + KL +LL L
Sbjct: 366 TQNNALYGVLF--EKSKEAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTM 422
Query: 130 VSY 132
V+Y
Sbjct: 423 VAY 425
>gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]
Length = 415
Score = 47.0 bits (110), Expect = 4e-05
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 12 LLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNN 71
L G + + R V V GA H+ L W P H + V + LWGV A+
Sbjct: 267 LYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQ 323
Query: 72 TGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAA 129
T + L G+L+ ++ ++ F Y W+A+ F + G S+ + KL +LL L
Sbjct: 324 TQNNALYGVLF--EKSKEAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTM 380
Query: 130 VSY 132
V+Y
Sbjct: 381 VAY 383
>gi|24308352 DMRT-like family B with proline-rich C-terminal, 1
[Homo sapiens]
Length = 342
Score = 47.0 bits (110), Expect = 4e-05
Identities = 64/210 (30%), Positives = 76/210 (36%), Gaps = 40/210 (19%)
Query: 185 PPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQ---GGVEPWEPLGQAQGFENTAET 241
P PGPE C +EQ RG P LQ GG EP E A
Sbjct: 103 PSGDADPGPEGRAAA---CFFEQPPRGRNPGPRALQPVLGGRSHVEPS------ERAAVA 153
Query: 242 LRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSN 301
+ +L+ P +GS P PL + + PGP T P RA
Sbjct: 154 MPSLAGPPFGAEAAGSGY-PGPLDLRRPMRTVPGPLFTDFVRPLNINPDRAL-------- 204
Query: 302 KEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVG--SAAPYWGRGEVS 359
G GG S MH PLG + P + QG S + Y G G VS
Sbjct: 205 ---------GPEYPGGSS---MHPYCPFPLGYLDAPPGVPLQQGFRHVSRSQYQGGGLVS 252
Query: 360 -VGPAHQP--FLPPEAP--PPIPACLCQPQ 384
G QP +LPP P PP+P QPQ
Sbjct: 253 EPGGDFQPSYYLPPPPPPLPPLPPLPPQPQ 282
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 46.6 bits (109), Expect = 6e-05
Identities = 72/263 (27%), Positives = 87/263 (33%), Gaps = 51/263 (19%)
Query: 177 GDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFE 236
G G + P GP PG P P Q Q+ P++ P Q P +P Q +
Sbjct: 37 GMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQP-PPHQPPPHPQPHQ 95
Query: 237 ---------NTAETLRALSTRPSAGAGSG----SSCDPA--PLQILPAVGRGPGPRVTA- 280
++++ + A P+ G GS SS PA P P G GPGP T
Sbjct: 96 QQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP-GSGPGPTPTPP 154
Query: 281 -LCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPD 339
TS P G P T P G A P A V GP
Sbjct: 155 PAVTSAPPGAPPPT-------------------PPSSGVPTTPPQAGGPPPPPAAVPGPG 195
Query: 340 LGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGG 399
G QG G P G+ P P L P P P G G RGG
Sbjct: 196 PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKP-----PHRG------GGEPRGG 244
Query: 400 CDGVAGPPWVQRARQTPEAHPPG 422
PP+ Q+ Q P PG
Sbjct: 245 RQ--HHPPYHQQHHQGPPPGGPG 265
Score = 30.8 bits (68), Expect = 3.2
Identities = 43/172 (25%), Positives = 49/172 (28%), Gaps = 27/172 (15%)
Query: 362 PAHQPFLPP-------EAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQ 414
P HQP PP + PPP P +P +G G A G + PP
Sbjct: 83 PPHQP--PPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSG 140
Query: 415 TPEAHPPGACVGILGPPATIPASDRVYFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHP 474
P PG PPA A QAGG P + P
Sbjct: 141 APPGSGPGPTP--TPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGP---- 194
Query: 475 LLLWPEERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHSPQP 526
P K G K G G P GPGL+ H P
Sbjct: 195 ---------GPGPKQGPGPGGPKGGKMPGGPKPG---GGPGLSTPGGHPKPP 234
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 46.2 bits (108), Expect = 7e-05
Identities = 74/276 (26%), Positives = 96/276 (34%), Gaps = 46/276 (16%)
Query: 177 GDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVE-------PWEPL 229
G+ + PP G G P G + P + + +GP P QGG + P +P
Sbjct: 44 GNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGP---PPQGGNQSQGPPPRPGKPE 100
Query: 230 GQAQGFENTAETLRALSTRPSA--GAGSGSSCDPAPLQILPA--------VGRGPGPRVT 279
GQ N ++ +P G S P P P +GP PR
Sbjct: 101 GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR-- 158
Query: 280 ALCTSYPQGPPRATIFLQKMSNKEILYCPY----WGVPGRGGRSAPGMHARLARPLGAVV 335
P+GPP + N+ P+ G P +GG + G R +P G
Sbjct: 159 ---PGKPEGPP------PQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGP-- 207
Query: 336 TGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGR 395
P GG Q G P G+ E GP Q P+ PPP P P P EG+
Sbjct: 208 --PPQGGNQSQG-PPPRPGKPE---GPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPP 261
Query: 396 DRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPP 431
G GPP Q P P G G PP
Sbjct: 262 PPG---RPQGPPPPGGNPQQPLPPPAGKPQGPPPPP 294
Score = 45.8 bits (107), Expect = 1e-04
Identities = 70/257 (27%), Positives = 92/257 (35%), Gaps = 48/257 (18%)
Query: 179 GAEEEAPPAGPRPG-PEPAGLGRRPCPYEQAQ----RGDGPEEHPLQGGVE-------PW 226
G + + PP PRPG PE G+ P Q+Q R PE P QGG + P
Sbjct: 86 GNQSQGPP--PRPGKPE----GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 139
Query: 227 EPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYP 286
+P G N ++ +P G + P P G+ GP +
Sbjct: 140 KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP---PHPGKPEGPPPQG--GNQS 194
Query: 287 QGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGG--PQ 344
QGPP + E G P +GG + G R +P G P GG PQ
Sbjct: 195 QGPP------PRPGKPE-------GPPPQGGNQSQGPPPRPGKPEGP----PSQGGNKPQ 237
Query: 345 GVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVA 404
G P+ G+ + GP Q P+ PPP P PG G G
Sbjct: 238 G---PPPHPGKPQ---GPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPP 291
Query: 405 GPPWVQRARQTPEAHPP 421
PP R + P+ PP
Sbjct: 292 PPPQGGRPHRPPQGQPP 308
Score = 30.0 bits (66), Expect = 5.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 175 EHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQ 231
+ G+ + PP P+ P P G ++P P A + GP P QGG P GQ
Sbjct: 252 QEGNKPQRPPPPGRPQGPPPPGGNPQQPLP-PPAGKPQGPPPPP-QGGRPHRPPQGQ 306
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 45.8 bits (107), Expect = 1e-04
Identities = 85/309 (27%), Positives = 112/309 (36%), Gaps = 54/309 (17%)
Query: 191 PGPEPAGLGRRPCPYE-QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRP 249
PGP A G P P + +A+ + P E+ L+ G+E L A G N +L P
Sbjct: 230 PGPAQAFPGHLPLPTKVEAKAPETPSEN-LRTGLE----LAPAPGRVNVVSP--SLEVAP 282
Query: 250 SAGAGSGSSC-DPAPLQILPAVGRGPGPR--------VTALCT-SYPQGPPRATIFLQKM 299
AG G+ SS DP PL+ + GPGP+ A T S + PPR +I +Q+M
Sbjct: 283 GAGQGASSSRPDPEPLEEGTRLTPGPGPQCPGPPGLPAQARATHSGGETPPRISIHIQEM 342
Query: 300 SNK-EILY-------------CPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQG 345
E+L P PG+ G G R L A T P P+G
Sbjct: 343 DTPGEMLMTGRGSLGPTLTTEAPAAAQPGKQGPPGTG------RCLQAPGTEPGEQTPEG 396
Query: 346 VGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAG 405
+P A + P P+ L + + GA G +G G
Sbjct: 397 ARELSPLQESSSPGGVKAEEEQRAGAEPGTRPS-LARSDDNDHEVGALGLQQGKSPGAGN 455
Query: 406 PPWVQ----RARQTPEA---HPPGACVGIL----GPPATIPASDRVY----FRATVGLSC 450
P Q RA EA PPGA G + P P RV + G
Sbjct: 456 PEPEQDCAARAPVRAEAVRRMPPGAEAGSVVLDDSPAPPAPFEHRVVSVKETSISAGYEV 515
Query: 451 DAHEKQAGG 459
HE GG
Sbjct: 516 CQHEVLGGG 524
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 145 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 199
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 200 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 257
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 258 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 316
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 317 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 370
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 371 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 423
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.7 bits (104), Expect = 2e-04
Identities = 85/288 (29%), Positives = 101/288 (35%), Gaps = 66/288 (22%)
Query: 178 DGAEEEAPPAGPRPGP-------EPAGLGRRPCPYEQAQRG-DGPE----EHPLQGGVEP 225
DGA+ +A PAGP+ P P +G R P E+ + G GP G P
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGP 333
Query: 226 WEPLGQA--QGFENTAETLRALSTRPSAGA-GSGSSCDPAPLQILPAVGRGPGPRVTALC 282
P G A GF A+ + AG G S P ++ P PGP A
Sbjct: 334 PGPTGPAGPPGFPG------AVGAKGEAGPQGPRGSEGPQGVRGEPGP---PGPAGAA-- 382
Query: 283 TSYPQGPPRATIFLQKMSNKEILYCPYWGVPG-RGGRSAPGMHARLARPLGAVVTGPD-L 340
P G P A G PG +G APG+ P +GP
Sbjct: 383 --GPAGNPGAD-----------------GQPGAKGANGAPGIAGAPGFPGARGPSGPQGP 423
Query: 341 GGPQGV----------GSAAPYWGRGE---VSV----GPAHQPFLPPEAPPPIPACLCQP 383
GGP G GS +GE V V GPA + P P L P
Sbjct: 424 GGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGP 483
Query: 384 QPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPP 431
PGE GG R G DGVAGP R +P P G G P
Sbjct: 484 -PGE-RGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP 529
Score = 35.8 bits (81), Expect = 0.099
Identities = 77/283 (27%), Positives = 90/283 (31%), Gaps = 62/283 (21%)
Query: 178 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWE-----PLGQA 232
DG P GP P PAG P ++ + G P P + P G A
Sbjct: 760 DGVRGLTGPIGP---PGPAG-----APGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPA 811
Query: 233 QGFENT--AETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQG-- 288
GF A+ P G + P P PA GP V A +G
Sbjct: 812 -GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG--PAGPPGPIGNVGAPGAKGARGSA 868
Query: 289 -PPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVG 347
PP AT G PG GR P + A P G GG G
Sbjct: 869 GPPGAT-----------------GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911
Query: 348 SAAPYWGRGEVS----VGPAHQPFLP----PEAPPPIPACLCQPQPGEGSGGAAG----R 395
P GEV GPA + P P P P PQ G G G R
Sbjct: 912 ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPG----PQGIAGQRGVVGLPGQR 967
Query: 396 DRGGCDGVAGPPWVQRARQTP-----EAHPPGAC--VGILGPP 431
G G+ GP + +Q P E PPG G+ GPP
Sbjct: 968 GERGFPGLPGPSG-EPGKQGPSGASGERGPPGPMGPPGLAGPP 1009
Score = 35.4 bits (80), Expect = 0.13
Identities = 42/134 (31%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 311 GVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGV-GSAAPYWGRGEVSV--------- 360
G G G + P A P+GA GP GPQG G +G+ +
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGA--RGP--AGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1116
Query: 361 -GPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRD-RGGCDGVAGPPWVQ-RARQTPE 417
GP P P E P + P+ GS GA G+D G G GPP + R
Sbjct: 1117 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176
Query: 418 AHPPGACVGILGPP 431
PPG G GPP
Sbjct: 1177 VGPPGP-PGPPGPP 1189
Score = 35.0 bits (79), Expect = 0.17
Identities = 73/250 (29%), Positives = 85/250 (34%), Gaps = 61/250 (24%)
Query: 186 PAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL 245
P GP P P GLG P Q G +E GG+ P+G + R L
Sbjct: 143 PPGPPGPPGPPGLGGNFAP----QLSYGYDEKS-TGGISVPGPMGPSGP--------RGL 189
Query: 246 STRPSAGAGSGSSCDPA-PLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEI 304
P A G P P + P GPR P GPP + + E
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGE--PGASGPMGPR-------GPPGPPG-----KNGDDGEA 235
Query: 305 LYCPYWGVPGR-GGRSAPGMHARLARPLGAVVTGPDLGGPQGV-------GSAAPYWGRG 356
G PGR G R PG AR L P + G +G G A P
Sbjct: 236 ------GKPGRPGERGPPGPQG--ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP----- 282
Query: 357 EVSVGPAHQPFLPPEAPPP---IPACLCQPQPGEGSGGAAG-RDRGGCDGVAGPPWVQRA 412
GP +P P E P P L + G+ G AG R G G AGPP
Sbjct: 283 ---AGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPP----- 334
Query: 413 RQTPEAHPPG 422
T A PPG
Sbjct: 335 GPTGPAGPPG 344
Score = 33.1 bits (74), Expect = 0.64
Identities = 70/266 (26%), Positives = 89/266 (33%), Gaps = 44/266 (16%)
Query: 172 AEDEHGD-GAEEEAPPAGPR-PGPEPAGLGRRPCPYEQAQRGD----GPEEHP-LQGGVE 224
A+ E GD GA+ +A P GP P P +G P + RG G P G V
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 225 PWEPLGQA--QGFENTAETLRALSTRPSAGAGSGSSCDPA--PLQILPAVGRGPGPRVTA 280
P P G A G A G G PA P ++ P GP +
Sbjct: 885 PPGPSGNAGPPGPPGPAGK--------EGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 281 LCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPG-RGGRSAPGMHARLARPLGAVVTG-- 337
P G P T Q ++ + + G+PG RG R PG+ P +G
Sbjct: 937 PGADGPAGAP-GTPGPQGIAGQRGVV----GLPGQRGERGFPGLPGPSGEPGKQGPSGAS 991
Query: 338 -----------PDLGGP------QGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACL 380
P L GP +G A GR + P PP P
Sbjct: 992 GERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 381 CQPQPGEGSGGAAGRDRGGCDGVAGP 406
P P +G + R G G AGP
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGP 1077
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 43.9 bits (102), Expect = 4e-04
Identities = 56/181 (30%), Positives = 68/181 (37%), Gaps = 34/181 (18%)
Query: 268 PAVGRG-PGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 326
P G+G PGP PQ PP A + P +P R G PG A
Sbjct: 5 PFFGQGRPGPPP-------PQPPPPAPFGCPPPPLPSPAFPP--PLPQRPG-PFPGASAP 54
Query: 327 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 386
+P A+ +G G A ++ P PP PPP P C+P PG
Sbjct: 55 FLQPPLALQPRASAEASRGGGGAGAFY------------PVPPPPLPPPPPQ--CRPFPG 100
Query: 387 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 446
+G R R G GPPW R PEA PP A +LG A DR + A
Sbjct: 101 TDAG---ERPRPPPPG-PGPPWSPR---WPEAPPPPA--DVLGDAALQRLRDRQWLEAVF 151
Query: 447 G 447
G
Sbjct: 152 G 152
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 140 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 195
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 361
Query: 196 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 251
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 362 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 421
Query: 252 GAGSGSSCDPAPLQILPAVGRGPGP 276
G PA + +G+G GP
Sbjct: 422 PLGKSPQVKPASTMGMGPLGKGAGP 446
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 140 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 195
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 438
Query: 196 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 251
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 498
Query: 252 GAGSGSSCDPAPLQILPAVGRGPGP 276
G PA + +G+G GP
Sbjct: 499 PLGKSPQVKPASTMGMGPLGKGAGP 523
Score = 30.0 bits (66), Expect = 5.5
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 41/160 (25%)
Query: 138 KLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPP----------- 186
+++ G PP R +P+ EES++ +E G +EEEAP
Sbjct: 251 QVKGGALPPAKRAKKPE-------------EESESSEE-GSESEEEAPAGTRSQVKASEK 296
Query: 187 -----AGPRPGPEPAGLGRRPCPYEQA-----QRGDGPEEHPLQGGVEPWEPLGQAQGFE 236
A P G G P P +A Q G E + E ++ E
Sbjct: 297 ILQVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSE------ESSDSE 350
Query: 237 NTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGP 276
+AL ++G S AP + P G P P
Sbjct: 351 EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 140 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 195
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 438
Query: 196 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 251
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 498
Query: 252 GAGSGSSCDPAPLQILPAVGRGPGP 276
G PA + +G+G GP
Sbjct: 499 PLGKSPQVKPASTMGMGPLGKGAGP 523
Score = 30.0 bits (66), Expect = 5.5
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 41/160 (25%)
Query: 138 KLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPP----------- 186
+++ G PP R +P+ EES++ +E G +EEEAP
Sbjct: 251 QVKGGALPPAKRAKKPE-------------EESESSEE-GSESEEEAPAGTRSQVKASEK 296
Query: 187 -----AGPRPGPEPAGLGRRPCPYEQA-----QRGDGPEEHPLQGGVEPWEPLGQAQGFE 236
A P G G P P +A Q G E + E ++ E
Sbjct: 297 ILQVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSE------ESSDSE 350
Query: 237 NTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGP 276
+AL ++G S AP + P G P P
Sbjct: 351 EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 140 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 195
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 361
Query: 196 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 251
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 362 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 421
Query: 252 GAGSGSSCDPAPLQILPAVGRGPGP 276
G PA + +G+G GP
Sbjct: 422 PLGKSPQVKPASTMGMGPLGKGAGP 446
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,255,594
Number of Sequences: 37866
Number of extensions: 1962127
Number of successful extensions: 14393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 724
Number of HSP's that attempted gapping in prelim test: 12048
Number of HSP's gapped (non-prelim): 2781
length of query: 529
length of database: 18,247,518
effective HSP length: 107
effective length of query: 422
effective length of database: 14,195,856
effective search space: 5990651232
effective search space used: 5990651232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.