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Search of human proteins with 239749957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
(707 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 1476 0.0
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 46 1e-04
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 46 1e-04
gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo ... 45 3e-04
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-04
gi|134142824 forkhead box D2 [Homo sapiens] 44 5e-04
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 42 0.002
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 42 0.002
gi|153792074 proline rich 12 [Homo sapiens] 42 0.002
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 40 0.006
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 40 0.006
gi|47132519 Ras association and pleckstrin homology domains 1 is... 40 0.006
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 40 0.010
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 40 0.010
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 40 0.010
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 40 0.010
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 39 0.013
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ... 39 0.013
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 39 0.013
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 39 0.013
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 39 0.013
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 39 0.017
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 39 0.017
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 39 0.022
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 38 0.028
gi|82534351 microtubule-associated protein tau isoform 1 [Homo s... 38 0.037
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 38 0.037
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 38 0.037
gi|71043876 undifferentiated embryonic cell transcription factor... 38 0.037
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 38 0.037
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 1476 bits (3821), Expect = 0.0
Identities = 707/707 (100%), Positives = 707/707 (100%)
Query: 1 MGAWRATETSPPVRPPGLAACCRPVQEVLVGGAVAGLLYLGLGDALEMPLSFSPEAIAPP 60
MGAWRATETSPPVRPPGLAACCRPVQEVLVGGAVAGLLYLGLGDALEMPLSFSPEAIAPP
Sbjct: 1 MGAWRATETSPPVRPPGLAACCRPVQEVLVGGAVAGLLYLGLGDALEMPLSFSPEAIAPP 60
Query: 61 APRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTGQR 120
APRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTGQR
Sbjct: 61 APRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTGQR 120
Query: 121 PQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQGGLGKCLGS 180
PQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQGGLGKCLGS
Sbjct: 121 PQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQGGLGKCLGS 180
Query: 181 AGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQGLPR 240
AGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQGLPR
Sbjct: 181 AGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQGLPR 240
Query: 241 GPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVGLWEGKVAEGASQGSGL 300
GPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVGLWEGKVAEGASQGSGL
Sbjct: 241 GPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVGLWEGKVAEGASQGSGL 300
Query: 301 STGPPSVQQPPHLSGSRRAQQVPVLQNMLQIHGAQWQTELTQGLMPREALEVEKLHLQGG 360
STGPPSVQQPPHLSGSRRAQQVPVLQNMLQIHGAQWQTELTQGLMPREALEVEKLHLQGG
Sbjct: 301 STGPPSVQQPPHLSGSRRAQQVPVLQNMLQIHGAQWQTELTQGLMPREALEVEKLHLQGG 360
Query: 361 PWQLRLRDLRQRPGLVKHGAERASVHFCLMSVSGLGGDADPGIGVHGAPRPQVGCLPQAH 420
PWQLRLRDLRQRPGLVKHGAERASVHFCLMSVSGLGGDADPGIGVHGAPRPQVGCLPQAH
Sbjct: 361 PWQLRLRDLRQRPGLVKHGAERASVHFCLMSVSGLGGDADPGIGVHGAPRPQVGCLPQAH 420
Query: 421 PDLGASGVGSAKGPCPVSSPPPRAWGLPFPRHPFRKLAEPLVLRSGALHLLASKVELQGE 480
PDLGASGVGSAKGPCPVSSPPPRAWGLPFPRHPFRKLAEPLVLRSGALHLLASKVELQGE
Sbjct: 421 PDLGASGVGSAKGPCPVSSPPPRAWGLPFPRHPFRKLAEPLVLRSGALHLLASKVELQGE 480
Query: 481 LQAPPLLSIPRAGLQAIHIRLHLEWVVVVPRALPRPTDSLSLGFFLWRRQQQQAAQRRQE 540
LQAPPLLSIPRAGLQAIHIRLHLEWVVVVPRALPRPTDSLSLGFFLWRRQQQQAAQRRQE
Sbjct: 481 LQAPPLLSIPRAGLQAIHIRLHLEWVVVVPRALPRPTDSLSLGFFLWRRQQQQAAQRRQE 540
Query: 541 TRRTPAARAPAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGETGGCPIFLPCWMRPPP 600
TRRTPAARAPAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGETGGCPIFLPCWMRPPP
Sbjct: 541 TRRTPAARAPAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGETGGCPIFLPCWMRPPP 600
Query: 601 GSSLPPCFSLLGPGPWALPGGPISSLGVSSLRSHHFLASTPGRTTAGAHHGLPAMQVEHV 660
GSSLPPCFSLLGPGPWALPGGPISSLGVSSLRSHHFLASTPGRTTAGAHHGLPAMQVEHV
Sbjct: 601 GSSLPPCFSLLGPGPWALPGGPISSLGVSSLRSHHFLASTPGRTTAGAHHGLPAMQVEHV 660
Query: 661 HCSPQELGSPEGSAGSWREEQGWLSAELTEQAWAKGAFLAGAQGRSA 707
HCSPQELGSPEGSAGSWREEQGWLSAELTEQAWAKGAFLAGAQGRSA
Sbjct: 661 HCSPQELGSPEGSAGSWREEQGWLSAELTEQAWAKGAFLAGAQGRSA 707
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 45.8 bits (107), Expect = 1e-04
Identities = 74/266 (27%), Positives = 100/266 (37%), Gaps = 42/266 (15%)
Query: 53 SPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPE 112
+P+A PP P PPP G L R +P G +L S AP+GG P LP
Sbjct: 60 APQADEPPLPPPPPPPGELAR--SPEAVGPELEAEEKL-SVRVAESAAAAPQGG-PELPP 115
Query: 113 GQAGTGQRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQG 172
A ++P E E PLP+P LV G + S+L P ++ + V L
Sbjct: 116 SPASPPEQPPAPEEREEPPLPQPVAPALVPPAGGDSTV-SQLIPGSE------VRVTLDH 168
Query: 173 GLGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVC 232
+ L + R + SGV ++ G H + + +P+ + P +
Sbjct: 169 IIEDALVVSFRFGEKLFSGVLMDLSKR----FGPHGIPVTVFPKR-EYKDKPEAM----- 218
Query: 233 PVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVGLWEGK--- 289
LQ GT+V E AVPD V P EL L LW K
Sbjct: 219 -PLQSNTFQEGTEV------KCEANGAVPDDPSPV-------PHPELSLAESLWTSKPPP 264
Query: 290 -VAEGASQGSGL---STGPPSVQQPP 311
EGA L T S+ QPP
Sbjct: 265 LFHEGAPYPPPLFIRDTYNQSIPQPP 290
>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
Length = 560
Score = 45.8 bits (107), Expect = 1e-04
Identities = 74/266 (27%), Positives = 100/266 (37%), Gaps = 42/266 (15%)
Query: 53 SPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPE 112
+P+A PP P PPP G L R +P G +L S AP+GG P LP
Sbjct: 60 APQADEPPLPPPPPPPGELAR--SPEAVGPELEAEEKL-SVRVAESAAAAPQGG-PELPP 115
Query: 113 GQAGTGQRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQG 172
A ++P E E PLP+P LV G + S+L P ++ + V L
Sbjct: 116 SPASPPEQPPAPEEREEPPLPQPVAPALVPPAGGDSTV-SQLIPGSE------VRVTLDH 168
Query: 173 GLGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVC 232
+ L + R + SGV ++ G H + + +P+ + P +
Sbjct: 169 IIEDALVVSFRFGEKLFSGVLMDLSKR----FGPHGIPVTVFPKR-EYKDKPEAM----- 218
Query: 233 PVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVGLWEGK--- 289
LQ GT+V E AVPD V P EL L LW K
Sbjct: 219 -PLQSNTFQEGTEV------KCEANGAVPDDPSPV-------PHPELSLAESLWTSKPPP 264
Query: 290 -VAEGASQGSGL---STGPPSVQQPP 311
EGA L T S+ QPP
Sbjct: 265 LFHEGAPYPPPLFIRDTYNQSIPQPP 290
>gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo
sapiens]
Length = 567
Score = 44.7 bits (104), Expect = 3e-04
Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 36/228 (15%)
Query: 180 SAGRQRHVVHSGVGQ---GQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQ 236
+AG Q H+ + GQ G A+AG G+HA+H+ PQ P G V +
Sbjct: 78 AAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQ----PQAPDGCRVDVLVLPP 133
Query: 237 GLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHI--LCRDRPEHELDLHVGLWEGKVAEGA 294
R GT + L+ P ++ H +CR R LH + +
Sbjct: 134 ARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPR------LHSSTSSPVMVSCS 187
Query: 295 SQGSGLSTGPPSVQQPPHLSGSRRAQQVPVLQNMLQIHG------------AQWQTELTQ 342
LS+ P P + + + LQ +L++ G Q Q ++
Sbjct: 188 PSACSLSSRSPC----PWPGNEHQCEDIRFLQVLLRVQGLAHQRLPEGGQEVQGQRDVCP 243
Query: 343 GLMPRE-ALEVEKLHLQGGPWQLRLRDLRQRPGLVKHGAERASVHFCL 389
P++ EV++L L GP Q++ GL++ G + +H CL
Sbjct: 244 NCNPQQLPQEVQQLLLPVGPGQVQALTF----GLLQQGGDAVGIHGCL 287
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 44.7 bits (104), Expect = 3e-04
Identities = 75/258 (29%), Positives = 95/258 (36%), Gaps = 52/258 (20%)
Query: 15 PPGLAACCRPVQEVLVGGAVAGLLYLGLGDA-LEMPLSFSPEAIAPPAPR----PPPCRG 69
PPG A + +Q A LL G D E S + APPAP P PC
Sbjct: 54 PPGGAGDHQTLQR-------ASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCP- 105
Query: 70 PLDRDLAPSRSGGSWPQPC-RLRSPAARRGEICAPRGGSPPLPEGQAGTGQRPQGLAESG 128
PL L P G+ P C R +P PRG P P A TG + A+ G
Sbjct: 106 PLGHGLRPRPPPGTPPPRCPRTLAPG--------PRGLFPAPPPAPARTGPAGKAAADRG 157
Query: 129 EEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQ---------GGLGKCLG 179
P P G V P F P L T+ +A+ L GG +
Sbjct: 158 R---PGPAAGRRVRR-SPSF--PPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKL 211
Query: 180 SAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQGLP 239
+ GR +G G+G +A+ G+ PG +G+P G GL
Sbjct: 212 ACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG-------------GLS 258
Query: 240 RGPGTQVHLAYGLSSERQ 257
R GT+V L Y S RQ
Sbjct: 259 RA-GTRV-LRYPSSHRRQ 274
Score = 30.0 bits (66), Expect = 7.7
Identities = 31/102 (30%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 528 RRQQQQAAQRRQETRRTPAARAPAMRAQRG---PGGVPATRSGISPGIAV----VPAGAG 580
RR + AA RR P QR PGG P +A PA
Sbjct: 38 RRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPR 97
Query: 581 ALGETGGCPIFLPCWMRPPPGSSLPPCFSLLGPGPWALPGGP 622
T P+ RPPPG+ P C L PGP L P
Sbjct: 98 QCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAP 139
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 43.9 bits (102), Expect = 5e-04
Identities = 61/224 (27%), Positives = 82/224 (36%), Gaps = 31/224 (13%)
Query: 41 GLGDALEMPLSFSPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEI 100
G G L +P +P PP P P P P A + + PC+L P G
Sbjct: 267 GYGYGLALPAYGAP----PPGPAPHPHPHPHAFAFAAAAAAA----PCQLSVPP---GRA 315
Query: 101 CAPRGGSPPLPEGQAGTGQRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQW 160
AP G PP AG G P SG P GPGP +P+ L +
Sbjct: 316 AAPPPG-PPTASVFAGAGSAPAPAPASGSGP-----------GPGP-AGLPAFLGAELGC 362
Query: 161 QEKAFIAVVLQGGLGKCLG---SAGRQRHVVHSGVGQGQAQAKAGLQGQHAV-HLPGWPQ 216
+ + A + G G + RQ +G G G A AG + ++ H+ G
Sbjct: 363 AKAFYAASLSPPAAGTAAGLPTALLRQGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGHGG 422
Query: 217 GVPLGNGPPGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQAAV 260
G G PPG G+ GPG Q + L++ A V
Sbjct: 423 G---GAAPPGAGEGSPGPPFAAAAGPGGQAQVLAMLTAPALAPV 463
Score = 33.9 bits (76), Expect = 0.53
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 406 HGAPRPQVGCLPQAHPDLGASGVGSAKGPCPVSSPPPRAWGLP 448
+GAP P P HP A +A PC +S PP RA P
Sbjct: 277 YGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPP 319
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 42.0 bits (97), Expect = 0.002
Identities = 44/153 (28%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 59 PPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTG 118
PP PRPP R P D ++ P G P P + P +R P S P P G
Sbjct: 60 PPPPRPPFGRPPFDPNMPPMPPPGGIPPP--MGPPHLQRPPFMPPPMSSMPPPPGMMFPP 117
Query: 119 QRPQGLAESGEEPLPRPCQGTLVSGPGP-----YFCIPSRLQPDTQWQEKAFIAVVLQGG 173
P + G LP P + V P Y+ +R ++ W + + V+ Q
Sbjct: 118 GMPP-VTAPGTPALP-PTEEIWVENKTPDGKVYYYNARTR---ESAWTKPDGVKVIQQSE 172
Query: 174 LGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQ 206
L L + Q V Q QAQA+A Q Q
Sbjct: 173 LTPMLAA---QAQVQAQAQAQAQAQAQAQAQAQ 202
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 42.0 bits (97), Expect = 0.002
Identities = 44/153 (28%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 59 PPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTG 118
PP PRPP R P D ++ P G P P + P +R P S P P G
Sbjct: 60 PPPPRPPFGRPPFDPNMPPMPPPGGIPPP--MGPPHLQRPPFMPPPMSSMPPPPGMMFPP 117
Query: 119 QRPQGLAESGEEPLPRPCQGTLVSGPGP-----YFCIPSRLQPDTQWQEKAFIAVVLQGG 173
P + G LP P + V P Y+ +R ++ W + + V+ Q
Sbjct: 118 GMPP-VTAPGTPALP-PTEEIWVENKTPDGKVYYYNARTR---ESAWTKPDGVKVIQQSE 172
Query: 174 LGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQ 206
L L + Q V Q QAQA+A Q Q
Sbjct: 173 LTPMLAA---QAQVQAQAQAQAQAQAQAQAQAQ 202
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 42.0 bits (97), Expect = 0.002
Identities = 60/224 (26%), Positives = 79/224 (35%), Gaps = 29/224 (12%)
Query: 53 SPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAA--RRGEICAPRGGSPPL 110
+P+ PP P PPP L+ L + P P RLR + G + G PL
Sbjct: 832 APQPPPPPPPPPPPMPLQLEAHLRSHGLEPAAPSP-RLRPEESLDPPGAMQELLGALEPL 890
Query: 111 PEGQAGTGQRP---QGLAESGEEPLPRPCQGTLVSG--PGPYFCIPSRLQPDTQWQEKAF 165
P TG P +G +G P P QGT P C P L D +E++F
Sbjct: 891 PPAPGDTGVGPPNSEGKDPAGAYRSPSP-QGTKAPRFVPLTSICFPDSLLQD---EERSF 946
Query: 166 IAVVLQ---GGLGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGN 222
+ + GG G AG +G +A AG PG P P G
Sbjct: 947 FPTMEEMFGGGAADDYGKAGPPE-------DEGDPKAGAGPP-------PGPPAYDPYGP 992
Query: 223 GPPGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQ 266
PG P GL P L +++E + HQ
Sbjct: 993 YCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQ 1036
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 40.4 bits (93), Expect = 0.006
Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 13/169 (7%)
Query: 510 PRALPRPTDSLSLGFFLWRRQQQQAAQRRQETRRTPAAR----APAMRAQRGPGGVPATR 565
P A RP+ L R A R P+AR APA +Q P G+ A R
Sbjct: 213 PAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR 272
Query: 566 SGISPGIAVVPA--GAGALGETGGCPIFLPCWMRPPPGSSLPPCFSLLGPGPWALPGGPI 623
P P A ALG P+ P PP S PP L P P
Sbjct: 273 ----PPQVTPPRKDAAPALGPLSSSPLATPS-PSAPPSPSAPPSLQTLPSPPATPPSQAT 327
Query: 624 SSLGVSSLR-SHHFLASTP-GRTTAGAHHGLPAMQVEHVHCSPQELGSP 670
+SLG +L+ +H FL S P PA+ + + P SP
Sbjct: 328 TSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASP 376
Score = 36.6 bits (83), Expect = 0.082
Identities = 144/644 (22%), Positives = 202/644 (31%), Gaps = 140/644 (21%)
Query: 43 GDALEMPLSFSPEAIAPP---APRPPP-----------CRGPLDRDLAPSRSGG------ 82
G A P + +P + P +PRPPP G + R R+GG
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 83 --SWPQ--PCRL-RSPAARRGEICAPRGGSPPLP---EGQAGTGQRP-----QGLAESGE 129
S P+ P R R PA+ RGE P + P P G+A RP +GL S E
Sbjct: 71 PESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAE 130
Query: 130 EPLPR------PCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQG----------- 172
E + R P + L +G P+ P ++ A G
Sbjct: 131 ETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPR 190
Query: 173 ----GLGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQ--GQHAVHLPGWPQGVPLGNGPPG 226
G K + SA S + + A GLQ ++ P P +GP
Sbjct: 191 PPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 250
Query: 227 VGQHVCPVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVGLW 286
G P P+ G Q ++ R+ A P
Sbjct: 251 RGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAP------------------------- 285
Query: 287 EGKVAEGASQGSGLST----GPPSVQQPPHLSGSRRAQQVPVLQNMLQIHGAQWQTELTQ 342
A G S L+T PPS PP L P Q + Q T
Sbjct: 286 ----ALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA--TH 339
Query: 343 GLMPREALEVEKLHLQGGPWQLRLRDLRQRPGLVKHGAERASVHFCLMSVSGLGGDADPG 402
+P L P L L L+ P + AS L ++ A
Sbjct: 340 SFLPSPPLSPLATPPPQAPPALALPPLQAPP------SPPASPP--LSPLATPSPQAPNA 391
Query: 403 IGVH---------GAPRPQVGCLPQAHPDLGASGVGSAKGPCPVSSPPPRAWGLPFPRHP 453
+ VH +P Q P A P + S ++ P +++PP + P P
Sbjct: 392 LAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPP 451
Query: 454 FRKLAEPLVLRSGALHLLASKVEL-QGELQAPPLLSIPRAGLQAIHIRLHLEWVVVVPRA 512
A P L A ++L + QAPP L+ P +A
Sbjct: 452 MSPSATP--PPQAPPPLAAPPLQLAKPPPQAPPALATPPL------------------QA 491
Query: 513 LPRPTDSLSLGFFLWRRQQQQAAQRRQETRRTPAARAPAMRAQ---RGPGGVPATRSGIS 569
LP P S F + +A TP +AP + A + P PA+ + +
Sbjct: 492 LPSPPAS-----FPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQA 546
Query: 570 PGIAVVPAGAGALGETGGCPIFLPCWMRPPPGSSLPPCFSLLGP 613
P P G G + L PPP S P +L GP
Sbjct: 547 PRRPPTP---GPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGP 587
Score = 36.2 bits (82), Expect = 0.11
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 543 RTPAARAPAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGE---------TGGCPIFLP 593
RTPAARAP + R PG P ++P V AGA+G GG I
Sbjct: 15 RTPAARAPGLLTPRPPGS-PRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 594 CWMRPPPGSSLPPCFSLLGPGPWALPG-----GPISSLGVSS 630
P +S PP G G A P GP+SS G +S
Sbjct: 74 APRAGPTRTSRPPA---SGRGERAPPAKNTSPGPVSSPGRAS 112
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 40.4 bits (93), Expect = 0.006
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 53 SPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPE 112
SP A AP PPC+ P+ + +P P P + RSPA+ P+ SP P
Sbjct: 349 SPSPPARAAPPCPPCQSPVPQRRSPVPP---CPSPQQRRSPASPSCPSPVPQRRSPVPPS 405
Query: 113 GQAGTGQRPQGLAESGEEPLPRP 135
Q+ + QR + S P PRP
Sbjct: 406 CQSPSPQRRSPVPPSCPAPQPRP 428
Score = 32.7 bits (73), Expect = 1.2
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 54 PEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEG 113
P + P PRPPP P +R LA ++ +P A +G R L EG
Sbjct: 418 PPSCPAPQPRPPPPPPPGERTLAER----AYAKPPSHHVKAGFQG-----RRSYSELAEG 468
Query: 114 QAGTGQRPQGL-AESGEEPLPRPCQGTLVSGPG 145
A G P L AE+ P PR G+ + GPG
Sbjct: 469 AAYAGASPPWLQAEAATLPKPR-AYGSELYGPG 500
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 40.4 bits (93), Expect = 0.006
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 49 PLSFSPEAIAPPAPRPPPCRGPLDRDLAPSRSGGS-----WPQPCRLRSPAARRGEICAP 103
PL P PP P PPP PL APS + + RL++ + G + P
Sbjct: 627 PLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGALFKP 686
Query: 104 RGGSPPLPEGQAGTGQ---RPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPS 152
+PP+ + Q+ Q P G+ P P P G+ ++ P C PS
Sbjct: 687 --PTPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPS 736
Score = 31.2 bits (69), Expect = 3.5
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 24/92 (26%)
Query: 54 PEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEG 113
P + P P PPP P P +SG SP + + +P G PP
Sbjct: 932 PSPVPAPPPPPPPTASP-----TPDKSG----------SPGKKTSKTSSPGGKKPP---- 972
Query: 114 QAGTGQRPQGLAES--GEEPLP-RPCQGTLVS 142
T QR + S E P P RP +LVS
Sbjct: 973 --PTPQRNSSIKSSSGAEHPEPKRPSVDSLVS 1002
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 39.7 bits (91), Expect = 0.010
Identities = 44/149 (29%), Positives = 60/149 (40%), Gaps = 24/149 (16%)
Query: 533 QAAQRRQETRRTPAARAPAMRAQRGPGGVPAT----------RSGISPGIAVVPAGAGAL 582
Q +++ T P P + P G PA + G SP AV P G+
Sbjct: 7002 QGSKQLPSTGGHPGTAQPERPSPDSPWGQPAPFCHPKQGSAPQEGCSPHPAVAPCPPGSF 7061
Query: 583 --GETGGCPI-----FLPCWMRPP-PGSSLPPCFSLLGPGPWALPG----GPISSLGVSS 630
G P+ FL PP P + PP S +GPG +LPG GP SS G +S
Sbjct: 7062 PPGSCKEAPLVPSSPFLGQPQAPPAPAKASPPLDSKMGPGDISLPGRPKPGPCSSPGSAS 7121
Query: 631 LRSHHFLAS-TPGRTTAGAHHGLPAMQVE 658
S ++S G + G G P++ E
Sbjct: 7122 QASSSQVSSLRVGSSQVGTEPG-PSLDAE 7149
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 39.7 bits (91), Expect = 0.010
Identities = 48/147 (32%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 8 ETSP--PVRPPGLAACCRPVQEVLVGGAVAGLLYLGLGDALEMPLS----FSPEAIAPPA 61
ET P P PP A EVLV GA G + L + + P + SPE PP
Sbjct: 40 ETVPGFPPAPPAPGAAQIRAAEVLVYGAPPGRVSRLL-ERFDPPAAPRRRGSPERARPPP 98
Query: 62 PRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGS--PPLPEG-QAGTG 118
P PPP P APS P+ SP ARR + G + P G G G
Sbjct: 99 PPPPPA-PPRPPPAAPSPPAAPGPRGGG-ASPGARRSDFLQKTGSNSFTVHPRGLHRGAG 156
Query: 119 QRPQGLAESGEEPLPRPCQGTLVSGPG 145
R S EP P S PG
Sbjct: 157 ARLLSNGHSAPEPRAGPANRLAGSPPG 183
Score = 32.0 bits (71), Expect = 2.0
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 598 PPPGSSLPPCFSLLGPGPWALPGGPISSLGVSSLRSHHFLASTPGRT----TAGAHHGLP 653
PPP PP P P A P GP R FL T + G H G
Sbjct: 98 PPPPPPAPPRPPPAAPSPPAAP-GPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAG 156
Query: 654 AMQVEHVHCSPQE--------LGSPEGSAGSWR 678
A + + H +P+ GSP GS G W+
Sbjct: 157 ARLLSNGHSAPEPRAGPANRLAGSPPGS-GQWK 188
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 39.7 bits (91), Expect = 0.010
Identities = 48/147 (32%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 8 ETSP--PVRPPGLAACCRPVQEVLVGGAVAGLLYLGLGDALEMPLS----FSPEAIAPPA 61
ET P P PP A EVLV GA G + L + + P + SPE PP
Sbjct: 40 ETVPGFPPAPPAPGAAQIRAAEVLVYGAPPGRVSRLL-ERFDPPAAPRRRGSPERARPPP 98
Query: 62 PRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGS--PPLPEG-QAGTG 118
P PPP P APS P+ SP ARR + G + P G G G
Sbjct: 99 PPPPPA-PPRPPPAAPSPPAAPGPRGGG-ASPGARRSDFLQKTGSNSFTVHPRGLHRGAG 156
Query: 119 QRPQGLAESGEEPLPRPCQGTLVSGPG 145
R S EP P S PG
Sbjct: 157 ARLLSNGHSAPEPRAGPANRLAGSPPG 183
Score = 32.0 bits (71), Expect = 2.0
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 598 PPPGSSLPPCFSLLGPGPWALPGGPISSLGVSSLRSHHFLASTPGRT----TAGAHHGLP 653
PPP PP P P A P GP R FL T + G H G
Sbjct: 98 PPPPPPAPPRPPPAAPSPPAAP-GPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAG 156
Query: 654 AMQVEHVHCSPQE--------LGSPEGSAGSWR 678
A + + H +P+ GSP GS G W+
Sbjct: 157 ARLLSNGHSAPEPRAGPANRLAGSPPGS-GQWK 188
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 39.7 bits (91), Expect = 0.010
Identities = 114/433 (26%), Positives = 150/433 (34%), Gaps = 113/433 (26%)
Query: 55 EAIAPP--------APRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGG 106
E I PP P+P P +GP+ + G P P + + P+G
Sbjct: 570 EQIQPPPSSGTPLLGPQPFPGQGPMSQ----IPQGFQQPHPSQQMPMNMAQMGPPGPQGQ 625
Query: 107 -SPPLPEGQAGTGQRPQG--LAESGEEPLPRPCQGTLVSGP-GPYFCIPSRLQPDTQWQE 162
PP P+GQ G PQG L + G P QG + GP GP P + P Q
Sbjct: 626 FRPPGPQGQMG----PQGPPLHQGGGGP-----QGFM--GPQGPQG--PPQGLPRPQDMH 672
Query: 163 KAFIAVVLQGGLGKCLGSAGRQRHVVHSGV----GQGQAQAKAGLQGQHAVHLPGWPQGV 218
G G QRH G G Q +G QG P PQG
Sbjct: 673 ----------------GPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGH 716
Query: 219 PLGNGPPGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHE 278
GPPG H+ P QG P G Q G R P H
Sbjct: 717 IGPQGPPGPQGHLGP--QGPPGTQGMQ-----GPPGPRGMQGPPHPH------------- 756
Query: 279 LDLHVGLWEGKVAEG----ASQGSGLSTGPPSVQQPPHLSGSRRAQQVPVLQNMLQIHGA 334
G+ G ++G SQG + P +Q PP R Q P Q M+ H
Sbjct: 757 -----GIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPP----GPRENQGPAPQGMIMGHPP 807
Query: 335 QWQ--TELTQGLM---PREALEVEKLH-LQGGPWQLRL----RDLRQRPG-LVKHGAERA 383
Q GL+ P+E +++ +QG P Q + ++LR PG + G +
Sbjct: 808 QEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQG 867
Query: 384 SVHFCLMSVSGLGGDADPGIGVHGAPRPQVGCLPQAHPDLGASGVGSAKGPCPVSSPPPR 443
S+ P G+ G P PQ Q +P A G ++GP P
Sbjct: 868 SL------------GPPPQGGMQGPPGPQ----GQQNP---ARGPHPSQGPIPFQQQKTP 908
Query: 444 AWGLPFPRHPFRK 456
G PR PF +
Sbjct: 909 LLG-DGPRAPFNQ 920
Score = 32.3 bits (72), Expect = 1.6
Identities = 47/188 (25%), Positives = 64/188 (34%), Gaps = 21/188 (11%)
Query: 64 PPPCRGPLD-RDL-APSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTGQRP 121
P RGP + R + P G P LR P + + P+G P P+G P
Sbjct: 824 PQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGP 883
Query: 122 QGL------AESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQGGLG 175
QG + P+P Q T + G GP P Q + ++ G
Sbjct: 884 QGQQNPARGPHPSQGPIPFQQQKTPLLGDGP-------RAPFNQEGQSTGPPPLIPG--- 933
Query: 176 KCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVL 235
LG G Q + GQG K +G H+ + +G P G P
Sbjct: 934 --LGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFR 991
Query: 236 QGLP-RGP 242
G RGP
Sbjct: 992 GGQDCRGP 999
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 39.3 bits (90), Expect = 0.013
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 175 GKCLGSAGRQRHVVHSGVGQGQAQ----------AKAGLQGQHAVHLPGWPQGVPLGNGP 224
G L S GR+ H + + V +G+A + G++G+H+ H P G P P
Sbjct: 16 GILLKSFGREEHGIEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKP 75
Query: 225 PGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQA-AVPDSQHQV 267
G P G P GT V +G ++A PD H++
Sbjct: 76 HHNGCAQRPAASGCPAQEGT-VAAGHGHQGPQEAKKKPDGSHRI 118
>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
sapiens]
Length = 329
Score = 39.3 bits (90), Expect = 0.013
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 175 GKCLGSAGRQRHVVHSGVGQGQAQ----------AKAGLQGQHAVHLPGWPQGVPLGNGP 224
G L S GR+ H + + V +G+A + G++G+H+ H P G P P
Sbjct: 16 GILLKSFGREEHGIEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKP 75
Query: 225 PGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQA-AVPDSQHQV 267
G P G P GT V +G ++A PD H++
Sbjct: 76 HHNGCAQRPAASGCPAQEGT-VAAGHGHQGPQEAKKKPDGSHRI 118
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 39.3 bits (90), Expect = 0.013
Identities = 71/240 (29%), Positives = 88/240 (36%), Gaps = 49/240 (20%)
Query: 54 PEAIAPPA-PRPPPCRG---------PLDRDLAPSRSGGSWPQ-----PCRLRSPAARRG 98
P+ PP P+ PP +G P + P GG+ PQ P + + P + G
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Query: 99 EICAPRGGSPP-LPEGQAGTGQRPQGLAES--GEEPLPRPCQGTLVSGPGPYFCIPSRLQ 155
P+G PP P+G G A S G+ P P G GP P P + Q
Sbjct: 210 N--KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPP---PGKPQ 264
Query: 156 -PDTQWQEKAFIAVVLQGGL--GKCLG---SAGRQRHVVHSGVGQGQAQA-KAGLQGQHA 208
P Q K QG GK G G + S G+ Q + G Q Q
Sbjct: 265 GPPPQGGNKP------QGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGP 318
Query: 209 VHLPGWPQGVPL--GNGPPGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQ 266
PG PQG P GN P G P G P+GP Q G S R A P + Q
Sbjct: 319 PPPPGKPQGPPPQGGNKPQG------PPPPGKPQGPPPQ-----GGSKSRSARSPPGKPQ 367
Score = 35.4 bits (80), Expect = 0.18
Identities = 71/273 (26%), Positives = 94/273 (34%), Gaps = 76/273 (27%)
Query: 54 PEAIAPPAPRP--PPCRG--PLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPP 109
P+ PP +P PP +G P + G PQ + RSP + G+ P+G P
Sbjct: 68 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK---PQG---P 121
Query: 110 LPEGQAGTGQRPQGLAESGEEPL-PRPCQGTLVSGPGPYFCIPSRLQ-PDTQWQEKAFIA 167
P+G G +PQG +P P P G GP P P + Q P Q K+
Sbjct: 122 PPQG----GNQPQGPPPPPGKPQGPPPQGGNKPQGPPP----PGKPQGPPPQGDNKS--- 170
Query: 168 VVLQGGLGKCLGSAGRQRHVVHSGVGQGQA-QAKAGLQGQHAVHLPGWPQGVPL--GNGP 224
S G+ Q + G Q Q PG PQG P GN P
Sbjct: 171 ------------------RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 212
Query: 225 PGVGQHVCPVLQGLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHILCRDRPEHELDLHVG 284
G P G P+GP Q G + + A P + Q
Sbjct: 213 QG------PPPPGKPQGPPPQ-----GDNKSQSARSPPGKPQ------------------ 243
Query: 285 LWEGKVAEGASQGSGLSTGPPSVQQPPHLSGSR 317
G +G +Q G P Q PP G++
Sbjct: 244 ---GPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 273
Score = 32.0 bits (71), Expect = 2.0
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 59 PPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGTG 118
PP P P +GP + + SRS S P + + P + G P+G PP P G G
Sbjct: 339 PPPPGKP--QGPPPQGGSKSRSARS--PPGKPQGPPQQEGN--NPQG--PPPPAG--GNP 388
Query: 119 QRPQGLAESGEEPLPRPCQGTLVSGP 144
Q+PQ + PRP QG S P
Sbjct: 389 QQPQAPPAGQPQGPPRPPQGGRPSRP 414
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 39.3 bits (90), Expect = 0.013
Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 24/189 (12%)
Query: 58 APPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGT 117
+P PP +GP R P G P R+ SP I PRG PP G G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGDKGAIG-MPGRVGSPGDAGLSIIGPRG--PPGQPGTRGF 170
Query: 118 GQRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQGGLGKC 177
P + G+ P P ++GP P + P Q EK +C
Sbjct: 171 PGFPGPIGLDGKPGHPGPKGDMGLTGP------PGQPGPQGQKGEKGQCGEYPHR---EC 221
Query: 178 LGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGP---PGVGQHVCPV 234
L S + + + Q A G Q Q ++ P P G P +GP PG+ + P
Sbjct: 222 LSS-------MPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGP- 273
Query: 235 LQGLPRGPG 243
GLP PG
Sbjct: 274 -PGLPGPPG 281
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 39.3 bits (90), Expect = 0.013
Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 24/189 (12%)
Query: 58 APPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAGT 117
+P PP +GP R P G P R+ SP I PRG PP G G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGDKGAIG-MPGRVGSPGDAGLSIIGPRG--PPGQPGTRGF 170
Query: 118 GQRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAVVLQGGLGKC 177
P + G+ P P ++GP P + P Q EK +C
Sbjct: 171 PGFPGPIGLDGKPGHPGPKGDMGLTGP------PGQPGPQGQKGEKGQCGEYPHR---EC 221
Query: 178 LGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGP---PGVGQHVCPV 234
L S + + + Q A G Q Q ++ P P G P +GP PG+ + P
Sbjct: 222 LSS-------MPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGP- 273
Query: 235 LQGLPRGPG 243
GLP PG
Sbjct: 274 -PGLPGPPG 281
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 38.9 bits (89), Expect = 0.017
Identities = 67/261 (25%), Positives = 88/261 (33%), Gaps = 33/261 (12%)
Query: 2 GAWRATETSPPVRPPGLAACCRPVQEVLVGGAVAG--LLYLGLGDALEMPLSFSPEAIAP 59
GA A +P P G+ C V G VAG + + +G L + + AP
Sbjct: 513 GAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLHGQLGTAP 572
Query: 60 PAPRPPPCRG-----------PLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSP 108
A P G P R+ R GG WP R P R G GG P
Sbjct: 573 HAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWP-----RRPRRRHGG--GGGGGGP 625
Query: 109 PLPE----GQAGTGQRPQGLAESGEEPLPRPCQGTL---VSGPGPYFCIPSRLQPDTQWQ 161
L + G AG +A + P R + V+ P + + D
Sbjct: 626 GLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAGAPVGADLDVS 685
Query: 162 EKAFIAVVLQGGLGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLG 221
++ VV G G+ G A R G QG + G G LPGW G
Sbjct: 686 VVLWVGVVGHLGRGRGAGRAEAARAAREGGPHQG-VFIQRGRGGLGHRPLPGW-----RG 739
Query: 222 NGPPGVGQHVCPVLQGLPRGP 242
G + Q VL +PR P
Sbjct: 740 QGVGPLAQPSVQVLGRVPRDP 760
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 38.9 bits (89), Expect = 0.017
Identities = 67/261 (25%), Positives = 88/261 (33%), Gaps = 33/261 (12%)
Query: 2 GAWRATETSPPVRPPGLAACCRPVQEVLVGGAVAG--LLYLGLGDALEMPLSFSPEAIAP 59
GA A +P P G+ C V G VAG + + +G L + + AP
Sbjct: 513 GAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLHGQLGTAP 572
Query: 60 PAPRPPPCRG-----------PLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSP 108
A P G P R+ R GG WP R P R G GG P
Sbjct: 573 HAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWP-----RRPRRRHGG--GGGGGGP 625
Query: 109 PLPE----GQAGTGQRPQGLAESGEEPLPRPCQGTL---VSGPGPYFCIPSRLQPDTQWQ 161
L + G AG +A + P R + V+ P + + D
Sbjct: 626 GLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAGAPVGADLDVS 685
Query: 162 EKAFIAVVLQGGLGKCLGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGWPQGVPLG 221
++ VV G G+ G A R G QG + G G LPGW G
Sbjct: 686 VVLWVGVVGHLGRGRGAGRAEAARAAREGGPHQG-VFIQRGRGGLGHRPLPGW-----RG 739
Query: 222 NGPPGVGQHVCPVLQGLPRGP 242
G + Q VL +PR P
Sbjct: 740 QGVGPLAQPSVQVLGRVPRDP 760
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 38.5 bits (88), Expect = 0.022
Identities = 37/115 (32%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 59 PPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGG---SPPLPEGQA 115
P APR PP G D P R G P PC + P + P+G +PP +G
Sbjct: 315 PQAPRWPPHPGKSREDRDPQRDG--LPGPCAVAQPGPAQ---AGPQGQGVLAPPTSQGSP 369
Query: 116 --GTGQRPQ--GLA---ESGEEPLPRPCQGTLVSGPGPYFCIPS---RLQPDTQW 160
G G+ PQ G A ++GE P P+P + G IP+ LQ W
Sbjct: 370 WWGWGRGPQVAGAAWEPQAGEAPPPQPAPPDASARQGQMQGIPAPSQALQEPAPW 424
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 38.1 bits (87), Expect = 0.028
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 59 PPAPRPPPC--RGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPL--PEGQ 114
PPA PPPC RG DL S SP ++ G +P GG P L +
Sbjct: 1101 PPAAEPPPCLRRGAAAADLLSS-------------SPESQHGGTQSPGGGQPLLQPTKVD 1147
Query: 115 AGTGQRPQGLAESGEEPLPRP 135
A G+RPQ L +P P
Sbjct: 1148 AAEGRRPQALRLIERDPYEHP 1168
Score = 37.0 bits (84), Expect = 0.063
Identities = 60/243 (24%), Positives = 82/243 (33%), Gaps = 59/243 (24%)
Query: 407 GAPRPQVGCLPQAHPD---LGASGVGSAKGPCPVSSP---PPRAWGLPFPRHPFRKLAEP 460
G P P++G PQ HP A G + P P+ P PP+A GL P+ P+ +P
Sbjct: 945 GFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQP 1004
Query: 461 LVLRSGALHLLASKVELQGELQAPPLLSIPRAGLQAIHIRLHLEWVVVVPRALPRPTDSL 520
VL Q PP +H +L+ P P P S
Sbjct: 1005 GVLG-----------------QPPP----------PLHTQLY-----PGPAQDPLPAHSG 1032
Query: 521 SLGFFLWRRQQQQAAQRRQETRRTPAARAPAMRAQ-RGPGGVPATRSGISPGIAVVPAGA 579
+L F + + P A PA + GP P T G S
Sbjct: 1033 ALPF---------PSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPS---------- 1073
Query: 580 GALGETGGCPIFLPCWMRPPPGSSLPPCFSLLGPGPWALPGGPISSLGVSSLRSHHFLAS 639
+ G++ P +P P +PP P P G + L SS S H
Sbjct: 1074 -SAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQ 1132
Query: 640 TPG 642
+PG
Sbjct: 1133 SPG 1135
>gi|82534351 microtubule-associated protein tau isoform 1 [Homo
sapiens]
Length = 758
Score = 37.7 bits (86), Expect = 0.037
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 60 PAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLPEGQAG--- 116
PA P P P SR+G S + +L+ A + +I PRG +PP +GQA
Sbjct: 429 PAVCPEPPSSPKHVSSVTSRTGSSGAKEMKLKG-ADGKTKIATPRGAAPPGQKGQANATR 487
Query: 117 ----TGQRPQGLAESGEEPLPRPCQGTLVSG----PGPYFCIPSRLQPDTQWQEKAFIAV 168
T P+ SGE P G G PG PS P T+ +K +AV
Sbjct: 488 IPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKK--VAV 545
Query: 169 V 169
V
Sbjct: 546 V 546
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 37.7 bits (86), Expect = 0.037
Identities = 61/211 (28%), Positives = 74/211 (35%), Gaps = 38/211 (18%)
Query: 54 PEAIAPPAP----RPPPCRGPLDRDLAPSRSGGSWPQ-PCRLRSPAARRGEICAPRGGSP 108
P + PP P P RG D P G + P P +G+ P G P
Sbjct: 509 PGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRP--GEP 566
Query: 109 PLPEGQAGTGQRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQWQEKAFIAV 168
LP + TG E PL P + PGP I R QP +
Sbjct: 567 GLPGARGLTGNPGVQGPEGKLGPLGAPGED---GRPGPPGSIGIRGQPGSMG-------- 615
Query: 169 VLQGGLGKCLGSAGRQRHVVHSGV-GQGQAQAK------------AGLQGQHAVHLPGWP 215
L G G G G+ ++GV GQ A K GL G+ P P
Sbjct: 616 -LPGPKGSS-GDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGP 673
Query: 216 ---QGVPLGNGPPGVGQHVCPVLQGLPRGPG 243
QG+P GPPG G P QG+P PG
Sbjct: 674 TGFQGLPGPPGPPGEGGK--PGDQGVPGDPG 702
Score = 30.8 bits (68), Expect = 4.5
Identities = 26/80 (32%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 557 GPGGVPATRSGIS----PGIAVVPAGAGALGETGGCPIFLPCWMRPPPGSSLPPCFSLLG 612
GP GVP + G PG P AG +G G P PG PP L G
Sbjct: 888 GPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPP--GLRG 945
Query: 613 P----------GPWALPGGP 622
GP PGGP
Sbjct: 946 DPGSHGRVGDRGPAGPPGGP 965
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 37.7 bits (86), Expect = 0.037
Identities = 78/268 (29%), Positives = 94/268 (35%), Gaps = 51/268 (19%)
Query: 17 GLAACCRPVQEV--LVGGAVAGLLYLGLGDALEMPLSFSPEAIA--PPAPRPPPCRGPLD 72
G AA PV+ + + G V G G LEMPL P + P P P RGP
Sbjct: 33 GGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPG 92
Query: 73 RDLAPSRSGGSWPQPCRLRSPAARRGEICAPRGGSPPLP-----EGQAGTGQRP-----Q 122
P + G P PA G + G P LP GQ G P Q
Sbjct: 93 PPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQ 152
Query: 123 GL-AESGEEPLPRPCQGTLVSGPGPYFCIPS----RLQPDTQWQEKAFIAVVLQGGLGKC 177
GL G LP P T+ PG +P + +P Q + L+G G
Sbjct: 153 GLRGPPGPPGLPGPSGITIPGKPGAQG-VPGPPGFQGEPGPQGEPGPPGDRGLKGDNG-- 209
Query: 178 LGSAGRQRHVVHSGVGQGQAQAKAGLQGQHAVHLPGW--------------PQGVP---- 219
+G G + GQG A GL G + PG P GVP
Sbjct: 210 VGQPG-----LPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRG 264
Query: 220 ----LG-NGPPGVGQHVCPVLQGLPRGP 242
+G GPPGV P GLP GP
Sbjct: 265 EPGAVGPKGPPGVDGVGVPGAAGLP-GP 291
Score = 37.0 bits (84), Expect = 0.063
Identities = 43/148 (29%), Positives = 50/148 (33%), Gaps = 20/148 (13%)
Query: 549 APAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGETGGCPIFLPCWMRPPPGSSLPPCF 608
AP GP G+P PG+ +P G GE+G + P G PP
Sbjct: 218 APGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGV 277
Query: 609 SLLG-PGPWALPG--GPISSLGVSSLRSHHFLASTPG------------RTTAG-----A 648
+G PG LPG GP + G R L G R AG
Sbjct: 278 DGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLG 337
Query: 649 HHGLPAMQVEHVHCSPQELGSPEGSAGS 676
G P E PQ LG P G GS
Sbjct: 338 DRGEPGEDGEPGEQGPQGLGGPPGLPGS 365
Score = 34.3 bits (77), Expect = 0.41
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 550 PAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGETGGCPIFLPCWMRPPPGSSLPPCFS 609
P +R +GP G+ A + G+ PG +P G G TG P P + P G +
Sbjct: 390 PGIRGDQGPSGL-AGKPGV-PGERGLPGAHGPPGPTG--PKGEPGFTGRPGGPGVAGALG 445
Query: 610 LLGP----------GPWALPG-----GPISSLGVSSLRSHHFLASTPGRTTAG 647
G GP +PG GPI G+ L+ L PG AG
Sbjct: 446 QKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAG 498
Score = 33.5 bits (75), Expect = 0.70
Identities = 43/132 (32%), Positives = 48/132 (36%), Gaps = 28/132 (21%)
Query: 550 PAMRAQRGPGGVPATRSGISPGIAVVPAGAGALGETGGCPIFLPCWMRPPPGSSLPPCFS 609
P + RGP GVP G P G GE G P + PPG LP
Sbjct: 321 PGPKGDRGPAGVPGLL-----GDRGEPGEDGEPGEQG------PQGLGGPPG--LPGSAG 367
Query: 610 LLG----PGPW--ALPGGPISSLGVSSLRSHHFLASTPGRTTAGAHHGLPAMQVEHVHCS 663
L G PGP A PGGP G+ + LA PG GLP H
Sbjct: 368 LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPG---VPGERGLPG-----AHGP 419
Query: 664 PQELGSPEGSAG 675
P G P+G G
Sbjct: 420 PGPTG-PKGEPG 430
Score = 32.7 bits (73), Expect = 1.2
Identities = 62/210 (29%), Positives = 71/210 (33%), Gaps = 45/210 (21%)
Query: 59 PPAPRPPPCRGPL-------DRDLAPSRSGGSWPQ-PCRLRSPAARRGEICAPRGGSPPL 110
P P P RGP DR P G Q P L P G P PP
Sbjct: 318 PGLPGPKGDRGPAGVPGLLGDRG-EPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPG 376
Query: 111 PEGQAGTG-----------QRPQGLAESGEEPLPRPCQGTLVSGPGPYFCIPSRLQPDTQ 159
P+G+AG G Q P GLA P R G GP P P
Sbjct: 377 PKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPG--AHGP------PGPTGPK-- 426
Query: 160 WQEKAFIAVVLQGGLGKCLGSAGRQRHVVHSGV-GQGQAQAKAGLQGQHAVHLPGWPQGV 218
E F G+ LG G G+ GQ + +G+ G P PQG+
Sbjct: 427 -GEPGFTGRPGGPGVAGALGQKG------DLGLPGQPGLRGPSGIPGLQGPAGPIGPQGL 479
Query: 219 P--LGN----GPPGVGQHVCPVLQGLPRGP 242
P G GPPG G+ P G P GP
Sbjct: 480 PGLKGEPGLPGPPGEGRAGEPGTAG-PTGP 508
Score = 31.6 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 193 GQGQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQGLPRGPGTQ 245
GQ + + G++G + P P G+P GP G+ P QG+P PG Q
Sbjct: 138 GQPGLRGEPGIRGDQGLRGPPGPPGLP---GPSGITIPGKPGAQGVPGPPGFQ 187
Score = 30.0 bits (66), Expect = 7.7
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 545 PAARAPAMRAQRGPGGVPA-TRSGIS-----PGIAVVPAGAGALGETGGCPIFLPCWMRP 598
P P + Q GP G P +R G + PG P G GE G I +R
Sbjct: 100 PGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPG---IRGDQGLRG 156
Query: 599 PPGSSLPPCFSLLGPGPWALPGGP 622
PPG PP L GP +PG P
Sbjct: 157 PPG---PP--GLPGPSGITIPGKP 175
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 37.7 bits (86), Expect = 0.037
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 53 SPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAARRG--EICAPRGGSPP 109
SP +PPAP P + D AP R GS P P P + G E CAP +PP
Sbjct: 215 SPAPGSPPAPAPTALATCIPEDRAPVRGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPP 273
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 37.7 bits (86), Expect = 0.037
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 54 PEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLR-SPAARR 97
P+ APP+P PPP G D D +P S P RL SP RR
Sbjct: 476 PDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRR 520
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,963,098
Number of Sequences: 37866
Number of extensions: 2645853
Number of successful extensions: 14899
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 563
Number of HSP's that attempted gapping in prelim test: 12752
Number of HSP's gapped (non-prelim): 2780
length of query: 707
length of database: 18,247,518
effective HSP length: 109
effective length of query: 598
effective length of database: 14,120,124
effective search space: 8443834152
effective search space used: 8443834152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.