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Search of human proteins with 10863997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10863997 polypyrimidine tract binding protein 2 [Homo
sapiens]
(531 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 1039 0.0
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 783 0.0
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 780 0.0
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 775 0.0
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 749 0.0
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 312 4e-85
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 169 6e-42
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 169 6e-42
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 105 1e-22
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 89 1e-17
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 74 3e-13
gi|62750354 matrin 3 [Homo sapiens] 52 1e-06
gi|21626466 matrin 3 [Homo sapiens] 52 1e-06
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 51 2e-06
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 47 4e-05
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 46 7e-05
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 46 7e-05
gi|224028246 non-POU domain containing, octamer-binding isoform ... 45 2e-04
gi|224028244 non-POU domain containing, octamer-binding isoform ... 45 2e-04
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 45 2e-04
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 44 3e-04
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 44 4e-04
gi|62526045 zinc finger protein 638 [Homo sapiens] 42 0.002
gi|21626468 zinc finger protein 638 [Homo sapiens] 42 0.002
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 41 0.002
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 40 0.005
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 39 0.009
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 38 0.026
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 38 0.026
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 38 0.026
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 1039 bits (2687), Expect = 0.0
Identities = 531/531 (100%), Positives = 531/531 (100%)
Query: 1 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV 60
MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV
Sbjct: 1 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV 60
Query: 61 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 120
LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH
Sbjct: 61 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 120
Query: 121 LRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV 180
LRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV
Sbjct: 121 LRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV 180
Query: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG 240
LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG
Sbjct: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG 240
Query: 241 QNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSL 300
QNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSL
Sbjct: 241 QNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSL 300
Query: 301 LAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFG 360
LAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFG
Sbjct: 301 LAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFG 360
Query: 361 VYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPRE 420
VYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPRE
Sbjct: 361 VYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPRE 420
Query: 421 GLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGG 480
GLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGG
Sbjct: 421 GLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGG 480
Query: 481 TVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
TVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI
Sbjct: 481 TVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 783 bits (2021), Expect = 0.0
Identities = 401/535 (74%), Positives = 457/535 (85%), Gaps = 8/535 (1%)
Query: 1 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV 60
MDGIV ++AVG KRGSDEL S V + P S+ ANGNDSKKFKG+ + G PSRV
Sbjct: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
Query: 61 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 120
+HIRKLP +VTE EVI+LGLPFGKVTN+LMLKGKNQAF+E+ TEEAA TMVNYY++VTP
Sbjct: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
Query: 121 LRNQPIYIQYSNHKELKTDNTLNQ-RAQAVLQAVTAVQTANTPL--SGTTVSESAVTPAQ 177
LR QPIYIQ+SNHKELKTD++ NQ RAQA LQAV +VQ+ N L S V Q
Sbjct: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
Query: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
SPVLRII++N++YPVTLDVLHQIFSKFG VLKIITFTKNNQFQALLQY DPV+AQ AKL+
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKE 297
LDGQNIYNACCTLRIDFSKL +LNVKYNNDKSRDYTRPDLPSGD QP+LD +AAAF
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFG-- 298
Query: 298 TSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFT 357
S+ V GAL+PLAIP+AAAAAAAA GR+ +PG++ GN+VLLVSNLN E VTPQSLF
Sbjct: 299 LSVPNVHGALAPLAIPSAAAAAAAA--GRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFI 356
Query: 358 LFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQL 417
LFGVYGDVQRVKIL+NKK++AL+QMADGNQ+QLAM+HLNG K++GK IR+TLSKHQ VQL
Sbjct: 357 LFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL 416
Query: 418 PREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFAN 477
PREG +DQGLTKD+GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV+EEDL+ LF++
Sbjct: 417 PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS 476
Query: 478 TGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
GG VK FKFFQ D KMAL+QM +VEEA+QALIDLHN++LGENHHLRVSFSKSTI
Sbjct: 477 NGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 531
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 780 bits (2013), Expect = 0.0
Identities = 403/552 (73%), Positives = 461/552 (83%), Gaps = 23/552 (4%)
Query: 1 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV 60
MDGIV ++AVG KRGSDEL S V + P S+ ANGNDSKKFKG+ + G PSRV
Sbjct: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
Query: 61 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 120
+HIRKLP +VTE EVI+LGLPFGKVTN+LMLKGKNQAF+E+ TEEAA TMVNYY++VTP
Sbjct: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
Query: 121 LRNQPIYIQYSNHKELKTDNTLNQ-RAQAVLQAVTAVQTANTPL--SGTTVSESAVTPAQ 177
LR QPIYIQ+SNHKELKTD++ NQ RAQA LQAV +VQ+ N L S V Q
Sbjct: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
Query: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
SPVLRII++N++YPVTLDVLHQIFSKFG VLKIITFTKNNQFQALLQY DPV+AQ AKL+
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAK- 296
LDGQNIYNACCTLRIDFSKL +LNVKYNNDKSRDYTRPDLPSGD QP+LD +AAAFA
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP 300
Query: 297 -------------ETSLLAVP---GALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 340
+ + L+VP GAL+PLAIP+AAAAAAAA GR+ +PG++ GN+VL
Sbjct: 301 YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAA--GRIAIPGLAGAGNSVL 358
Query: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKM 400
LVSNLN E VTPQSLF LFGVYGDVQRVKIL+NKK++AL+QMADGNQ+QLAM+HLNG K+
Sbjct: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL 418
Query: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
+GK IR+TLSKHQ VQLPREG +DQGLTKD+GNSPLHRFKKPGSKNFQNIFPPSATLHLS
Sbjct: 419 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS 478
Query: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGEN 519
NIPPSV+EEDL+ LF++ GG VK FKFFQ D KMAL+QM +VEEA+QALIDLHN++LGEN
Sbjct: 479 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGEN 538
Query: 520 HHLRVSFSKSTI 531
HHLRVSFSKSTI
Sbjct: 539 HHLRVSFSKSTI 550
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 775 bits (2001), Expect = 0.0
Identities = 401/559 (71%), Positives = 457/559 (81%), Gaps = 30/559 (5%)
Query: 1 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV 60
MDGIV ++AVG KRGSDEL S V + P S+ ANGNDSKKFKG+ + G PSRV
Sbjct: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
Query: 61 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 120
+HIRKLP +VTE EVI+LGLPFGKVTN+LMLKGKNQAF+E+ TEEAA TMVNYY++VTP
Sbjct: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
Query: 121 LRNQPIYIQYSNHKELKTDNTLNQ-RAQAVLQAVTAVQTANTPL--SGTTVSESAVTPAQ 177
LR QPIYIQ+SNHKELKTD++ NQ RAQA LQAV +VQ+ N L S V Q
Sbjct: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
Query: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
SPVLRII++N++YPVTLDVLHQIFSKFG VLKIITFTKNNQFQALLQY DPV+AQ AKL+
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKE 297
LDGQNIYNACCTLRIDFSKL +LNVKYNNDKSRDYTRPDLPSGD QP+LD +AAAF
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP 300
Query: 298 TSLLAVP------------------------GALSPLAIPNAAAAAAAAAAGRVGMPGVS 333
+ A P GAL+PLAIP+AAAAAAAA GR+ +PG++
Sbjct: 301 GIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAA--GRIAIPGLA 358
Query: 334 AGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMN 393
GN+VLLVSNLN E VTPQSLF LFGVYGDVQRVKIL+NKK++AL+QMADGNQ+QLAM+
Sbjct: 359 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 418
Query: 394 HLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPP 453
HLNG K++GK IR+TLSKHQ VQLPREG +DQGLTKD+GNSPLHRFKKPGSKNFQNIFPP
Sbjct: 419 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 478
Query: 454 SATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLH 512
SATLHLSNIPPSV+EEDL+ LF++ GG VK FKFFQ D KMAL+QM +VEEA+QALIDLH
Sbjct: 479 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 538
Query: 513 NYNLGENHHLRVSFSKSTI 531
N++LGENHHLRVSFSKSTI
Sbjct: 539 NHDLGENHHLRVSFSKSTI 557
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 749 bits (1934), Expect = 0.0
Identities = 383/558 (68%), Positives = 453/558 (81%), Gaps = 33/558 (5%)
Query: 1 MDGIVTE-VAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSR 59
MDG+VT+ + VG+KRGSDELLS +++ P + SS TANGNDSKKFK D+ +PSR
Sbjct: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFK-RDRPPCSPSR 59
Query: 60 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP 119
VLH+RK+P +VTE E+I+LGLPFGKVTN+LMLKGK+QAFLE+A+EEAA+TMVNYY+ +TP
Sbjct: 60 VLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITP 119
Query: 120 HLRNQPIYIQYSNHKELKTDNTLNQ-RAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
HLR+QP+YIQYSNH+ELKTDN NQ RAQA LQAV+AVQ+ + LSG +E V P QS
Sbjct: 120 HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQS 179
Query: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
PVLRIII+N++YPVTL+VLHQIFSKFG VLKIITFTKNNQFQALLQY DPVNA AK+AL
Sbjct: 180 PVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMAL 239
Query: 239 DGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAF---- 294
DGQNIYNACCTLRIDFSKL +LNVKYNNDKSRD+TR DLP+GDGQP+L+P +AAAF
Sbjct: 240 DGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPG 299
Query: 295 --------------------AKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSA 334
A S+ AVPGAL PL I ++A A G G+PG
Sbjct: 300 IISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPG--- 356
Query: 335 GGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNH 394
N+VLLV+NLN +++TP LF LFGVYGDV RVKI++NKK++AL+QMAD NQ+QLAMNH
Sbjct: 357 --NSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
Query: 395 LNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPS 454
L+GQ++YGK++R TLSKHQ VQLPREG +DQGLTKDF NSPLHRFKKPGSKNFQNIFPPS
Sbjct: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 474
Query: 455 ATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHN 513
ATLHLSNIPPSV +DL+ LF G +VKAFKFFQ D KMAL+Q+ +VEEAIQALI+LHN
Sbjct: 475 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 534
Query: 514 YNLGENHHLRVSFSKSTI 531
++LGENHHLRVSFSKSTI
Sbjct: 535 HDLGENHHLRVSFSKSTI 552
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 312 bits (800), Expect = 4e-85
Identities = 151/183 (82%), Positives = 171/183 (93%), Gaps = 1/183 (0%)
Query: 350 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 409
VTPQSLF LFGVYGDVQRVKIL+NKK++AL+QMADGNQ+QLAM+HLNG K++GK IR+TL
Sbjct: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 74
Query: 410 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 469
SKHQ VQLPREG +DQGLTKD+GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV+EE
Sbjct: 75 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEE 134
Query: 470 DLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
DL+ LF++ GG VK FKFFQ D KMAL+QM +VEEA+QALIDLHN++LGENHHLRVSFSK
Sbjct: 135 DLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 194
Query: 529 STI 531
STI
Sbjct: 195 STI 197
Score = 32.7 bits (73), Expect = 0.85
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 19/193 (9%)
Query: 70 VTETEVIALGLPFGKVTNILMLKGKNQ-AFLELATEEAAITMVNYYSAVTPHLRNQPIYI 128
VT + L +G V + +L K + A +++A A +++ + H +PI I
Sbjct: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH--GKPIRI 72
Query: 129 QYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLS-----GTTVSESAVTPAQSPVLRI 183
S H+ ++ Q Q + + N+PL G+ ++ P+ + +
Sbjct: 73 TLSKHQNVQLPRE-GQEDQGLTK-----DYGNSPLHRFKKPGSKNFQNIFPPSAT----L 122
Query: 184 IIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNI 243
+ N+ V+ + L +FS G V+K F + ++ AL+Q G A QA + L ++
Sbjct: 123 HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 182
Query: 244 YNACCTLRIDFSK 256
LR+ FSK
Sbjct: 183 -GENHHLRVSFSK 194
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 169 bits (428), Expect = 6e-42
Identities = 141/498 (28%), Positives = 231/498 (46%), Gaps = 57/498 (11%)
Query: 58 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV 117
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V + +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 118 TPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQ 177
++ Q + YS K +T + P G
Sbjct: 130 PVYIAGQQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------ 160
Query: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
+ VL + I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAA 219
Query: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA---- 292
L+G +IY CCTL+I++++ LNV N++ S DYT+P L D G+ AI
Sbjct: 220 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPS 279
Query: 293 -----AFAKETSLLAVPG--ALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
+ LL +P + P A A+ G +G +V++VS L
Sbjct: 280 SFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG--SVVMVSGL 337
Query: 346 NEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKII 405
++ + +F LF +YG++++VK + +AL++M D + A+ HLN K++GK +
Sbjct: 338 HQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRL 397
Query: 406 RVTLSKHQTVQLPR--EGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 463
V +SK +V + E D KDF S +RF G + I PPS LH N+P
Sbjct: 398 NVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVP 457
Query: 464 PSVAEEDLRTLFANTGG-TVKAFKFFQDHKMA-----LLQMATVEEAIQALIDLHNYNL- 516
V EE L + T +K F A LL+ +A++AL L++Y +
Sbjct: 458 LCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIR 517
Query: 517 ---GEN-HHLRVSFSKST 530
G N + L++ FS S+
Sbjct: 518 VPNGSNPYTLKLCFSTSS 535
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 169 bits (428), Expect = 6e-42
Identities = 141/498 (28%), Positives = 231/498 (46%), Gaps = 57/498 (11%)
Query: 58 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV 117
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V + +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 118 TPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQ 177
++ Q + YS K +T + P G
Sbjct: 135 PVYIAGQQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------ 165
Query: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
+ VL + I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAA 224
Query: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA---- 292
L+G +IY CCTL+I++++ LNV N++ S DYT+P L D G+ AI
Sbjct: 225 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPS 284
Query: 293 -----AFAKETSLLAVPG--ALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
+ LL +P + P A A+ G +G +V++VS L
Sbjct: 285 SFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG--SVVMVSGL 342
Query: 346 NEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKII 405
++ + +F LF +YG++++VK + +AL++M D + A+ HLN K++GK +
Sbjct: 343 HQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRL 402
Query: 406 RVTLSKHQTVQLPR--EGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 463
V +SK +V + E D KDF S +RF G + I PPS LH N+P
Sbjct: 403 NVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVP 462
Query: 464 PSVAEEDLRTLFANTGG-TVKAFKFFQDHKMA-----LLQMATVEEAIQALIDLHNYNL- 516
V EE L + T +K F A LL+ +A++AL L++Y +
Sbjct: 463 LCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIR 522
Query: 517 ---GEN-HHLRVSFSKST 530
G N + L++ FS S+
Sbjct: 523 VPNGSNPYTLKLCFSTSS 540
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 105 bits (262), Expect = 1e-22
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 33/248 (13%)
Query: 41 GNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLE 100
G + + K +P V+HIR L V E +++ FG ++ ++++ K QA +E
Sbjct: 86 GGGGENYDDPHKTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVE 143
Query: 101 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTAN 160
A VNY + ++ P ++ YS +++
Sbjct: 144 FEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKI------------------------ 179
Query: 161 TPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQ 220
+ +S + + + VL I N Y +T DVL+ I + G V +I+ F KN Q
Sbjct: 180 -----SRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNG-VQ 233
Query: 221 ALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSG 280
A++++ +AQ+AK +L+G +IY+ CCTL+I+++K LNV N+ + DYT P+L SG
Sbjct: 234 AMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL-SG 292
Query: 281 DGQPALDP 288
G P +P
Sbjct: 293 QGDPGSNP 300
Score = 84.0 bits (206), Expect = 3e-16
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 339 VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQ 398
VL+V L++ + +F +F +YG+V++VK + +K +A+++MADG A+ HLN
Sbjct: 383 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 442
Query: 399 KMYGKIIRVTLSKHQTVQLPRE--GLDDQGLT-KDFGNSPLHRFKKPGSKNFQNIFPPSA 455
M+G+ + V +SK + +P + GL+D + KDF S +RF P I PS
Sbjct: 443 FMFGQKLNVCVSKQPAI-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSN 501
Query: 456 TLHLSNIPPSVAEEDLRTLFANTG----GTVKAFKFFQDHKMA-LLQMATVEEAIQALID 510
LH N P V EE+ + G +VK F + + LL+ + +A++ L
Sbjct: 502 VLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGF 561
Query: 511 LHNYNL 516
L++Y +
Sbjct: 562 LNHYQM 567
Score = 33.9 bits (76), Expect = 0.38
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 326 RVGMPGVSAGGNTVLLVSNLNE-EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMAD 384
R G S N+VLL + LN +T L+T+ G VQR+ I A+++
Sbjct: 181 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS 240
Query: 385 GNQSQLAMNHLNGQKMYGK--IIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKP 442
+Q A LNG +Y +++ +K + + + D T D+ N L P
Sbjct: 241 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDP 296
Query: 443 GS 444
GS
Sbjct: 297 GS 298
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 88.6 bits (218), Expect = 1e-17
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 31/195 (15%)
Query: 94 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAV 153
K QA +E A VNY + ++ P ++ YS +++
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPG------------- 50
Query: 154 TAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITF 213
+S + + + VL I N Y +T DVL+ I + G V +I+ F
Sbjct: 51 ----------------DSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIF 94
Query: 214 TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYT 273
KN QA++++ +AQ+AK +L+G +IY+ CCTL+I+++K LNV N+ + DYT
Sbjct: 95 RKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYT 153
Query: 274 RPDLPSGDGQPALDP 288
P+L SG G P +P
Sbjct: 154 NPNL-SGQGDPGSNP 167
Score = 84.0 bits (206), Expect = 3e-16
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 339 VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQ 398
VL+V L++ + +F +F +YG+V++VK + +K +A+++MADG A+ HLN
Sbjct: 250 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 309
Query: 399 KMYGKIIRVTLSKHQTVQLPRE--GLDDQGLT-KDFGNSPLHRFKKPGSKNFQNIFPPSA 455
M+G+ + V +SK + +P + GL+D + KDF S +RF P I PS
Sbjct: 310 FMFGQKLNVCVSKQPAI-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSN 368
Query: 456 TLHLSNIPPSVAEEDLRTLFANTG----GTVKAFKFFQDHKMA-LLQMATVEEAIQALID 510
LH N P V EE+ + G +VK F + + LL+ + +A++ L
Sbjct: 369 VLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGF 428
Query: 511 LHNYNL 516
L++Y +
Sbjct: 429 LNHYQM 434
Score = 33.9 bits (76), Expect = 0.38
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 326 RVGMPGVSAGGNTVLLVSNLNE-EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMAD 384
R G S N+VLL + LN +T L+T+ G VQR+ I A+++
Sbjct: 48 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS 107
Query: 385 GNQSQLAMNHLNGQKMYGK--IIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKP 442
+Q A LNG +Y +++ +K + + + D T D+ N L P
Sbjct: 108 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDP 163
Query: 443 GS 444
GS
Sbjct: 164 GS 165
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 73.9 bits (180), Expect = 3e-13
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 59 RVLHIRKLP-GEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV 117
RV+HI LP G TE +VI LGLPFGKVTN +++K NQAFLE+A EAA MV YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 577
Query: 118 TPHLRNQPIYIQYS-NHKELK 137
+ + + + I+ S +KEL+
Sbjct: 578 SAVINGEKLLIRMSKRYKELQ 598
>gi|62750354 matrin 3 [Homo sapiens]
Length = 847
Score = 52.0 bits (123), Expect = 1e-06
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 58 SRVLHIRKLP-GEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
SRV+HI G+ +++ L PFG ++N L+L N+AF+E+AT E A V+YY+
Sbjct: 397 SRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTT 456
Query: 117 VTPHLRNQPIYIQYS-NHKEL-KTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVT 174
+ +P+ + S +K + K + +Q+ + + +N P SG S+SAV
Sbjct: 457 TPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSG--YSDSAVL 514
Query: 175 PAQSPVLRI 183
P +I
Sbjct: 515 KLAEPYGKI 523
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 44 SKKFKGEDKMDGAPS----------RVLHIRKLPGE-VTETEVIALGLPFGKVTNILMLK 92
S+K+K K +G P RV+H+ LP +++ V+ L P+GK+ N ++++
Sbjct: 471 SQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 530
Query: 93 GKNQAFLELATEEAAITMVNY 113
K+QAF+E+ T E A+ MV++
Sbjct: 531 MKSQAFIEMETREDAMAMVDH 551
Score = 39.3 bits (90), Expect = 0.009
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 370 ILYNKKDSALIQMADGNQSQLAMNHLNGQK--MYGKIIRVTLS-KHQTVQLPREGLDDQG 426
++ NK + A I+MA +Q A+++ ++GK +RV LS K++ ++ P EG DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 427 LTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFK 486
F +HLSN+P S + A G +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYI 527
Query: 487 FFQDHKMALLQMATVEEAIQALID 510
+ A ++M T E+A+ A++D
Sbjct: 528 LMRMKSQAFIEMETREDAM-AMVD 550
>gi|21626466 matrin 3 [Homo sapiens]
Length = 847
Score = 52.0 bits (123), Expect = 1e-06
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 58 SRVLHIRKLP-GEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
SRV+HI G+ +++ L PFG ++N L+L N+AF+E+AT E A V+YY+
Sbjct: 397 SRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTT 456
Query: 117 VTPHLRNQPIYIQYS-NHKEL-KTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVT 174
+ +P+ + S +K + K + +Q+ + + +N P SG S+SAV
Sbjct: 457 TPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSG--YSDSAVL 514
Query: 175 PAQSPVLRI 183
P +I
Sbjct: 515 KLAEPYGKI 523
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 44 SKKFKGEDKMDGAPS----------RVLHIRKLPGE-VTETEVIALGLPFGKVTNILMLK 92
S+K+K K +G P RV+H+ LP +++ V+ L P+GK+ N ++++
Sbjct: 471 SQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 530
Query: 93 GKNQAFLELATEEAAITMVNY 113
K+QAF+E+ T E A+ MV++
Sbjct: 531 MKSQAFIEMETREDAMAMVDH 551
Score = 39.3 bits (90), Expect = 0.009
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 370 ILYNKKDSALIQMADGNQSQLAMNHLNGQK--MYGKIIRVTLS-KHQTVQLPREGLDDQG 426
++ NK + A I+MA +Q A+++ ++GK +RV LS K++ ++ P EG DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 427 LTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFK 486
F +HLSN+P S + A G +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYI 527
Query: 487 FFQDHKMALLQMATVEEAIQALID 510
+ A ++M T E+A+ A++D
Sbjct: 528 LMRMKSQAFIEMETREDAM-AMVD 550
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 51.2 bits (121), Expect = 2e-06
Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 27/272 (9%)
Query: 155 AVQTAN-TPLSGTTVSESAVTPAQSPV--LRIIIDNMYYPVTLDVLHQIFSKFGAVLK-- 209
A+ T N L T+ S P+ + + + + + ++ + Q+FS++G ++
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
Query: 210 --IITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN------LN 261
+ T ++ +++ + A++A L+GQ A + + F+ + L
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
Query: 262 VKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAA 321
+R Y P L + LD + A+ ++ L + SP+AI + A
Sbjct: 216 THLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKSPLSLI-ARFSPIAIDGMSGLAG- 272
Query: 322 AAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKIL----YNK-KD 376
VG+ G +AG + V NL+ E L+ LFG +G V VK++ NK K
Sbjct: 273 -----VGLSGGAAGAGWCIFVYNLSPE-ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKG 326
Query: 377 SALIQMADGNQSQLAMNHLNGQKMYGKIIRVT 408
+ M + +++ +A+ LNG ++ ++++V+
Sbjct: 327 FGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
Score = 44.3 bits (103), Expect = 3e-04
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 327 VGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDS-----ALIQ 381
+G G + T L+V+ L + M T +LFG GD++ K++ +K +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNM-TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 382 MADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHR 438
+D N + A+N LNG K+ K I+V+ ++ + + L GL K + +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 31.6 bits (70), Expect = 1.9
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 461 NIPPSVAEEDLRTLFANTGGT--VKAFKFFQDHK---MALLQMATVEEAIQALIDLHNYN 515
N+ P E L LF G VK + F +K + M +EA A+ L+ Y
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349
Query: 516 LGENHHLRVSFSKS 529
LGE L+VSF S
Sbjct: 350 LGE-RVLQVSFKTS 362
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 47.0 bits (110), Expect = 4e-05
Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 34/272 (12%)
Query: 155 AVQTAN-TPLSGTTVSESAVTPAQSPV--LRIIIDNMYYPVTLDVLHQIFSKFGAVLK-- 209
A+ T N L T+ S P+ + + + + + ++ + Q+FS++G ++
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
Query: 210 --IITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN------LN 261
+ T ++ +++ + A++A L+GQ A + + F+ + L
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
Query: 262 VKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAA 321
+R Y P L + LD + A+ + SP+AI + A
Sbjct: 216 THLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKR--------FSPIAIDGMSGLAG- 265
Query: 322 AAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKIL----YNK-KD 376
VG+ G +AG + V NL+ E L+ LFG +G V VK++ NK K
Sbjct: 266 -----VGLSGGAAGAGWCIFVYNLSPE-ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKG 319
Query: 377 SALIQMADGNQSQLAMNHLNGQKMYGKIIRVT 408
+ M + +++ +A+ LNG ++ ++++V+
Sbjct: 320 FGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 351
Score = 44.3 bits (103), Expect = 3e-04
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 327 VGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDS-----ALIQ 381
+G G + T L+V+ L + M T +LFG GD++ K++ +K +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNM-TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 382 MADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHR 438
+D N + A+N LNG K+ K I+V+ ++ + + L GL K + +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 32.0 bits (71), Expect = 1.4
Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 49/234 (20%)
Query: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNK-----KDSALIQMADGNQSQLAMNH 394
L VS L + M + + + LF YG + +IL ++ + I+ +++ A+
Sbjct: 127 LYVSGLPKTM-SQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 395 LNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNS------PLH----RFKKPGS 444
LNGQK G +T+ + P + LT + +S PLH RF+
Sbjct: 186 LNGQKPLGAAEPITV---KFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNL 242
Query: 445 KNFQ---NIFPPSATLHLS---------------------NIPPSVAEEDLRTLFANTGG 480
N F P A +S N+ P E L LF G
Sbjct: 243 LNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGA 302
Query: 481 T--VKAFKFFQDHK---MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKS 529
VK + F +K + M +EA A+ L+ Y LGE L+VSF S
Sbjct: 303 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE-RVLQVSFKTS 355
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 46.2 bits (108), Expect = 7e-05
Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 27/219 (12%)
Query: 337 NTVLLVSNLNEEMVTPQ---SLFTLFGVYGDVQRVKILYNKK--DSALIQMADGNQSQLA 391
N + ++N+N+++ + SL+ LF +G V + L K A + + S A
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 392 MNHLNGQKMYGKIIRVT--------LSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPG 443
+ L G YGK +R+ +SK + +E ++ K + KKPG
Sbjct: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
Query: 444 -----SKNFQNI---------FPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ 489
S N Q +PP+ L L+N+P E L LF G +
Sbjct: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPG 185
Query: 490 DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
H +A ++ +A A L + + +H ++++++K
Sbjct: 186 RHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 46.2 bits (108), Expect = 7e-05
Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 27/219 (12%)
Query: 337 NTVLLVSNLNEEMVTPQ---SLFTLFGVYGDVQRVKILYNKK--DSALIQMADGNQSQLA 391
N + ++N+N+++ + SL+ LF +G V + L K A + + S A
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 392 MNHLNGQKMYGKIIRVT--------LSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPG 443
+ L G YGK +R+ +SK + +E ++ K + KKPG
Sbjct: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
Query: 444 -----SKNFQNI---------FPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ 489
S N Q +PP+ L L+N+P E L LF G +
Sbjct: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPG 185
Query: 490 DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
H +A ++ +A A L + + +H ++++++K
Sbjct: 186 RHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 424 DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVK 483
++GLT D N F+KPG K F + L + N+PP + EE++R LF G +
Sbjct: 52 NEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMRKLFEKYGKAGE 102
Query: 484 AFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFS 527
F +D +++ T A A ++L N L LRV F+
Sbjct: 103 VF-IHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
Score = 37.4 bits (85), Expect = 0.034
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 23/195 (11%)
Query: 43 DSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA 102
D K F+ + L + LP ++TE E+ L +GK + + K K F+ L
Sbjct: 58 DLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE 117
Query: 103 TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT--------DNTLNQRAQAVL---- 150
T + + LR + + ++++ H T N L + A +V
Sbjct: 118 TR--TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVE 175
Query: 151 QAVTAVQTANTPLSGTTVSESAVTPAQSPVL------RIIIDNMYYPVTLDVLHQIFSKF 204
+AV V P SG + E + PA L ++ PVT++ + Q+ +
Sbjct: 176 RAVVIVDDRGRP-SGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEE 234
Query: 205 GAVLKIITFTKNNQF 219
G K++ KN QF
Sbjct: 235 GLPEKLV--IKNQQF 247
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 424 DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVK 483
++GLT D N F+KPG K F + L + N+PP + EE++R LF G +
Sbjct: 52 NEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMRKLFEKYGKAGE 102
Query: 484 AFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFS 527
F +D +++ T A A ++L N L LRV F+
Sbjct: 103 VF-IHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
Score = 37.4 bits (85), Expect = 0.034
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 23/195 (11%)
Query: 43 DSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA 102
D K F+ + L + LP ++TE E+ L +GK + + K K F+ L
Sbjct: 58 DLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE 117
Query: 103 TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT--------DNTLNQRAQAVL---- 150
T + + LR + + ++++ H T N L + A +V
Sbjct: 118 TR--TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVE 175
Query: 151 QAVTAVQTANTPLSGTTVSESAVTPAQSPVL------RIIIDNMYYPVTLDVLHQIFSKF 204
+AV V P SG + E + PA L ++ PVT++ + Q+ +
Sbjct: 176 RAVVIVDDRGRP-SGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEE 234
Query: 205 GAVLKIITFTKNNQF 219
G K++ KN QF
Sbjct: 235 GLPEKLV--IKNQQF 247
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 424 DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVK 483
++GLT D N F+KPG K F + L + N+PP + EE++R LF G +
Sbjct: 52 NEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMRKLFEKYGKAGE 102
Query: 484 AFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFS 527
F +D +++ T A A ++L N L LRV F+
Sbjct: 103 VF-IHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
Score = 37.4 bits (85), Expect = 0.034
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 23/195 (11%)
Query: 43 DSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA 102
D K F+ + L + LP ++TE E+ L +GK + + K K F+ L
Sbjct: 58 DLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE 117
Query: 103 TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT--------DNTLNQRAQAVL---- 150
T + + LR + + ++++ H T N L + A +V
Sbjct: 118 TR--TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVE 175
Query: 151 QAVTAVQTANTPLSGTTVSESAVTPAQSPVL------RIIIDNMYYPVTLDVLHQIFSKF 204
+AV V P SG + E + PA L ++ PVT++ + Q+ +
Sbjct: 176 RAVVIVDDRGRP-SGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEE 234
Query: 205 GAVLKIITFTKNNQF 219
G K++ KN QF
Sbjct: 235 GLPEKLV--IKNQQF 247
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 44.3 bits (103), Expect = 3e-04
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 45/190 (23%)
Query: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
L + NL E T Q + +LF YG V I+ K+ + + D ++ A+ +L+ K
Sbjct: 4 LFIGNLPRE-ATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYK 59
Query: 400 MYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHL 459
++G I V SK+++ S LH+
Sbjct: 60 LHGVNINVEASKNKS-------------------------------------KASTKLHV 82
Query: 460 SNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNL-GE 518
NI P+ ++LR F G ++ +D+ A + M E+A++A+ L N G+
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIEC-DIVKDY--AFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 519 NHHLRVSFSK 528
H+++S S+
Sbjct: 140 RMHVQLSTSR 149
Score = 30.0 bits (66), Expect = 5.5
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 457 LHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNL 516
L + N+P E+++R+LF G ++ +++ ++ T E A+ +LH+Y L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIEDKTAAE--DAIRNLHHYKL 60
Query: 517 -GENHHLRVSFSKS 529
G N ++ S +KS
Sbjct: 61 HGVNINVEASKNKS 74
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 43.9 bits (102), Expect = 4e-04
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 45/190 (23%)
Query: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
L + NL E T Q + +LF YG V I+ K+ + + D ++ A+ +L+ K
Sbjct: 4 LFIGNLPRE-ATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYK 59
Query: 400 MYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHL 459
++G I V SK+++ S LH+
Sbjct: 60 LHGVNINVEASKNKS-------------------------------------KTSTKLHV 82
Query: 460 SNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNL-GE 518
NI P+ ++LR F G ++ +D+ A + M E+A++A+ L N G+
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIEC-DIVKDY--AFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 519 NHHLRVSFSK 528
H+++S S+
Sbjct: 140 RMHVQLSTSR 149
Score = 30.0 bits (66), Expect = 5.5
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 457 LHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNL 516
L + N+P E+++R+LF G ++ +++ ++ T E A+ +LH+Y L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIEDKTAAE--DAIRNLHHYKL 60
Query: 517 -GENHHLRVSFSKS 529
G N ++ S +KS
Sbjct: 61 HGVNINVEASKNKS 74
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 60 VLHIRKLPGE-VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVT 118
VL I +LP + TE +V L PFGKV ++L++ + +A+LE+ +EA ++ Y
Sbjct: 677 VLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTP 736
Query: 119 PHLRNQPIYI-----QYSNHKELK---------TDNTLNQRAQA--VLQAVTAVQTANTP 162
++ + + I + + +KE+K + +TL + A A ++ VT+ A T
Sbjct: 737 LTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKRDADASKAVEIVTSTSAAKTG 796
Query: 163 LSGTTVSE 170
+ +V++
Sbjct: 797 QAKASVAK 804
Score = 38.1 bits (87), Expect = 0.020
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 50 EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAIT 109
E +D R +H+ LP + + V+ +GL FGKV + + + +N+A L+L + E+A +
Sbjct: 1000 EANIDTIYDRFVHLDNLPEDGLQC-VLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQS 1058
Query: 110 MVNY 113
M ++
Sbjct: 1059 MYSF 1062
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 60 VLHIRKLPGE-VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVT 118
VL I +LP + TE +V L PFGKV ++L++ + +A+LE+ +EA ++ Y
Sbjct: 677 VLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTP 736
Query: 119 PHLRNQPIYI-----QYSNHKELK---------TDNTLNQRAQA--VLQAVTAVQTANTP 162
++ + + I + + +KE+K + +TL + A A ++ VT+ A T
Sbjct: 737 LTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKRDADASKAVEIVTSTSAAKTG 796
Query: 163 LSGTTVSE 170
+ +V++
Sbjct: 797 QAKASVAK 804
Score = 38.1 bits (87), Expect = 0.020
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 50 EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAIT 109
E +D R +H+ LP + + V+ +GL FGKV + + + +N+A L+L + E+A +
Sbjct: 1000 EANIDTIYDRFVHLDNLPEDGLQC-VLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQS 1058
Query: 110 MVNY 113
M ++
Sbjct: 1059 MYSF 1062
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 329 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNK----KDSALIQMAD 384
M +A + L V NL E VT + LF LF G V +VKI +K K A +
Sbjct: 1 MGAAAAEADRTLFVGNL-ETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKH 59
Query: 385 GNQSQLAMNHLNGQKMYGKIIRV 407
AMN LNG K+YG+ I++
Sbjct: 60 EVSVPYAMNLLNGIKLYGRPIKI 82
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 40.0 bits (92), Expect = 0.005
Identities = 60/285 (21%), Positives = 122/285 (42%), Gaps = 31/285 (10%)
Query: 152 AVTAVQTAN-TPLSGTTVSESAVTPAQSPV--LRIIIDNMYYPVTLDVLHQIFSKFGAVL 208
A A+ T N L T+ S P+ + + + + + +T L Q+FS++G ++
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 209 K----IITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDF-------SKL 257
+ T ++ +++ + A++A L+GQ A + + F S
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Query: 258 VNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAA 317
L+ Y + R Y P L + LD + A+ + + G + P A P
Sbjct: 220 ALLSQLYQSPNRR-YPGP-LHHQAQRFRLDNLLNMAYGVKRLM---SGPVPPSACP--PR 272
Query: 318 AAAAAAAGRVGMPGVSAGGNT----VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-- 371
+ G + G++ G+T + V NL+ + L+ LFG +G V VK++
Sbjct: 273 FSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDS-DESVLWQLFGPFGAVNNVKVIRD 331
Query: 372 --YNK-KDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQ 413
NK K + M + +++ +A+ LNG ++ ++++V+ ++
Sbjct: 332 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 37.4 bits (85), Expect = 0.034
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 331 GVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDS-----ALIQMADG 385
G + + L+ N + +T + +LFG G+++ K++ +K + D
Sbjct: 38 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 386 NQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHR 438
++ A+N LNG ++ K I+V+ ++ + + L GL K L +
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 39.3 bits (90), Expect = 0.009
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 331 GVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDS-----ALIQMADG 385
G + T L+V+ L + M T + L +LFG G+++ K++ +K + D
Sbjct: 32 GNTEDSKTNLIVNYLPQNM-TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 386 NQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHR 438
++ A+N LNG ++ K I+V+ ++ + + L GL K L +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 37.7 bits (86), Expect = 0.026
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITF----TKNNQFQALLQYGDPVNAQQAKL 236
+R+ + ++++ +T D+L IF FG + I+ T ++ + + D A++A
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Query: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAK 296
L+G + A +R+ +V D D T P DG LD A
Sbjct: 289 QLNGFEL--AGRPMRVG-------HVTERLDGGTDITFP-----DGDQELDLGSAGG--- 331
Query: 297 ETSLLAVPGALSPLAIPNAAAAAAAAAA--------GRVGMPGVSAGGNTVLLVS-NLNE 347
L+A + + +P+ AAAAAAAAA G V + ++ T L + NL
Sbjct: 332 RFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLAS 391
Query: 348 EMVTPQSLFT 357
+ SLFT
Sbjct: 392 QCFQLSSLFT 401
Score = 30.4 bits (67), Expect = 4.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK------GKNQAFLELATEE 105
K +G P R L++ L +TE + + PFGK+ NI+++K K F+ + E
Sbjct: 223 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 281
Query: 106 AA 107
A
Sbjct: 282 CA 283
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 37.7 bits (86), Expect = 0.026
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITF----TKNNQFQALLQYGDPVNAQQAKL 236
+R+ + ++++ +T D+L IF FG + I+ T ++ + + D A++A
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAK 296
L+G + A +R+ +V D D T P DG LD A
Sbjct: 323 QLNGFEL--AGRPMRVG-------HVTERLDGGTDITFP-----DGDQELDLGSAGG--- 365
Query: 297 ETSLLAVPGALSPLAIPNAAAAAAAAAA--------GRVGMPGVSAGGNTVLLVS-NLNE 347
L+A + + +P+ AAAAAAAAA G V + ++ T L + NL
Sbjct: 366 RFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLAS 425
Query: 348 EMVTPQSLFT 357
+ SLFT
Sbjct: 426 QCFQLSSLFT 435
Score = 30.4 bits (67), Expect = 4.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK------GKNQAFLELATEE 105
K +G P R L++ L +TE + + PFGK+ NI+++K K F+ + E
Sbjct: 257 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
Query: 106 AA 107
A
Sbjct: 316 CA 317
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 37.7 bits (86), Expect = 0.026
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITF----TKNNQFQALLQYGDPVNAQQAKL 236
+R+ + ++++ +T D+L IF FG + I+ T ++ + + D A++A
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAK 296
L+G + A +R+ +V D D T P DG LD A
Sbjct: 307 QLNGFEL--AGRPMRVG-------HVTERLDGGTDITFP-----DGDQELDLGSAGG--- 349
Query: 297 ETSLLAVPGALSPLAIPNAAAAAAAAAA--------GRVGMPGVSAGGNTVLLVS-NLNE 347
L+A + + +P+ AAAAAAAAA G V + ++ T L + NL
Sbjct: 350 RFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLAS 409
Query: 348 EMVTPQSLFT 357
+ SLFT
Sbjct: 410 QCFQLSSLFT 419
Score = 30.4 bits (67), Expect = 4.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK------GKNQAFLELATEE 105
K +G P R L++ L +TE + + PFGK+ NI+++K K F+ + E
Sbjct: 241 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 299
Query: 106 AA 107
A
Sbjct: 300 CA 301
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,767,034
Number of Sequences: 37866
Number of extensions: 824808
Number of successful extensions: 4499
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 4033
Number of HSP's gapped (non-prelim): 490
length of query: 531
length of database: 18,247,518
effective HSP length: 107
effective length of query: 424
effective length of database: 14,195,856
effective search space: 6019042944
effective search space used: 6019042944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.