Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 10835218
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens]
(1001 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens] 2071 0.0
gi|4507635 topoisomerase (DNA) III beta [Homo sapiens] 397 e-110
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 60 1e-08
gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens] 46 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.008
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] 39 0.032
gi|47271475 SPOC domain containing 1 [Homo sapiens] 37 0.093
gi|208431824 forkhead box I3 [Homo sapiens] 37 0.12
gi|50083281 KIAA1853 protein [Homo sapiens] 36 0.16
gi|91208420 bassoon protein [Homo sapiens] 35 0.46
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 35 0.46
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 35 0.46
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 35 0.46
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 35 0.46
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 34 0.79
gi|48762934 alpha 2 type I collagen [Homo sapiens] 33 1.0
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 33 1.3
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 33 1.3
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 33 1.3
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 33 1.3
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 33 1.3
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 33 1.3
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 33 1.8
gi|37622910 cholinergic receptor, muscarinic 1 [Homo sapiens] 33 1.8
gi|154146199 sal-like 3 [Homo sapiens] 33 1.8
gi|31881740 solute carrier family 12 (potassium/chloride transpo... 32 2.3
gi|40807471 transcription termination factor, RNA polymerase II ... 32 2.3
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 32 3.0
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 32 3.0
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 32 3.9
>gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens]
Length = 1001
Score = 2071 bits (5365), Expect = 0.0
Identities = 1001/1001 (100%), Positives = 1001/1001 (100%)
Query: 1 MIFPVARYALRWLRRPEDRAFSRAAMEMALRGVRKVLCVAEKNDAAKGIADLLSNGRMRR 60
MIFPVARYALRWLRRPEDRAFSRAAMEMALRGVRKVLCVAEKNDAAKGIADLLSNGRMRR
Sbjct: 1 MIFPVARYALRWLRRPEDRAFSRAAMEMALRGVRKVLCVAEKNDAAKGIADLLSNGRMRR 60
Query: 61 REGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK 120
REGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK
Sbjct: 61 REGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK 120
Query: 121 YCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKAVKPNLQVLRARFSE 180
YCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKAVKPNLQVLRARFSE
Sbjct: 121 YCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKAVKPNLQVLRARFSE 180
Query: 181 ITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLIS 240
ITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLIS
Sbjct: 181 ITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLIS 240
Query: 241 YGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLY 300
YGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLY
Sbjct: 241 YGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLY 300
Query: 301 QLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI 360
QLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI
Sbjct: 301 QLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI 360
Query: 361 SYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPT 420
SYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPT
Sbjct: 361 SYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPT 420
Query: 421 KYTNNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDV 480
KYTNNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDV
Sbjct: 421 KYTNNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDV 480
Query: 481 YPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAE 540
YPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAE
Sbjct: 481 YPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAE 540
Query: 541 HIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKK 600
HIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKK
Sbjct: 541 HIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKK 600
Query: 601 DKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQ 660
DKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQ
Sbjct: 601 DKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQ 660
Query: 661 CNKDMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKF 720
CNKDMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKF
Sbjct: 661 CNKDMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKF 720
Query: 721 KRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGGPPRASQPSGRLQANQSLNRMDNSQH 780
KRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGGPPRASQPSGRLQANQSLNRMDNSQH
Sbjct: 721 KRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGGPPRASQPSGRLQANQSLNRMDNSQH 780
Query: 781 PQPADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCNG 840
PQPADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCNG
Sbjct: 781 PQPADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCNG 840
Query: 841 GSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCS 900
GSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCS
Sbjct: 841 GSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCS 900
Query: 901 QPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLES 960
QPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLES
Sbjct: 901 QPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLES 960
Query: 961 EARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCPQNR 1001
EARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCPQNR
Sbjct: 961 EARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCPQNR 1001
>gi|4507635 topoisomerase (DNA) III beta [Homo sapiens]
Length = 862
Score = 397 bits (1020), Expect = e-110
Identities = 264/716 (36%), Positives = 371/716 (51%), Gaps = 51/716 (7%)
Query: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
++ VL VAEK A+ IA +LS G + +GL+ ++E+ GQ V MTSV GH
Sbjct: 1 MKTVLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH 60
Query: 93 LLAHDFQMQFRKWQSCNPLVLF-EAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDR 151
++ DF ++ KW +P LF +A EK +++ K L+ E R C +V+W DCD+
Sbjct: 61 VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDK 120
Query: 152 EGENIGFEIIHVC-----KAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDV 206
EGENI FE++ KA V RARFS IT + A L EPD + +VD
Sbjct: 121 EGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDA 180
Query: 207 RQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEI 266
RQELDLRIG AFTRFQT Q + + L LIS+G CQ PTLGF VER IQ+F PE
Sbjct: 181 RQELDLRIGCAFTRFQTKYFQGKYGD-LDSSLISFGPCQTPTLGFCVERHDKIQSFKPET 239
Query: 267 FH--RIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 324
+ + KV D KD + +W R R+F+ + + + A V K K+K RP
Sbjct: 240 YWVLQAKVNTD-KDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRP 298
Query: 325 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 384
AL+TVE+ ++AS L + + M+ AE+LYTQGYISYPRTET +P + +L + QQ
Sbjct: 299 LALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQA 358
Query: 385 PDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTNN--LQGDEQRLYEFIVRHFL 442
P W + +L G PR G+ + HPPI P K L GD RLYE+I RHF+
Sbjct: 359 NHPYWADTVKRLLAEGINRPRKGHDAGD-HPPITPMKSATEAELGGDAWRLYEYITRHFI 417
Query: 443 ACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWS-DKILPVYEQGSHFQ 501
A S D + ++T+ I E F G +L+ + +V P+ ++ LP ++G F
Sbjct: 418 ATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFP 477
Query: 502 PSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLP 561
V+M++ +T+PP LTEA+LI LMEKHGIGTDA+ HI I R YV + +R P
Sbjct: 478 VGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKP 537
Query: 562 GHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAV 621
+LG+ LV GY + E+ P +R+ +E L LI GK D VL + +K+ F V
Sbjct: 538 TNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFV 597
Query: 622 AKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNKDMVLKTKKNGGFYLSCMG 681
+DE + F + LA A +P+ +C +C++ M K + S
Sbjct: 598 DSIAGMDELMEVSF---SPLA-------ATGKPLSRCGKCHRFMKYIQAKPSRLHCS--- 644
Query: 682 FPECRSAVWLPDS------------------VLEAS----RDSSVCPVCQPHPVYR 715
C LP + VL +S + +CP C HP +R
Sbjct: 645 --HCDETYTLPQNGTIKLYKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFR 698
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 59.7 bits (143), Expect = 1e-08
Identities = 41/132 (31%), Positives = 51/132 (38%), Gaps = 46/132 (34%)
Query: 820 VLLTVRKEGPNRGRQFFKC---NGGSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPG 876
+L VRK+G N+GRQF+ C C FF WAD P
Sbjct: 515 ILRVVRKDGENKGRQFYACPLPREAQCGFFEWADLSFP---------------------- 552
Query: 877 PGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWV 936
F N G + S +TV K GPN G+ F C +E+QC FFQW
Sbjct: 553 -------FCNHG------------KRSTMKTVLKIGPNNGKNFFVCPLGKEKQCNFFQWA 593
Query: 937 DENTAPGTSGAP 948
+ PG P
Sbjct: 594 E--NGPGIKIIP 603
Score = 57.8 bits (138), Expect = 5e-08
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 886 NPGDGSGSGTSCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVD 937
NP S + LC + R V+KDG NKGRQF+ C PRE QCGFF+W D
Sbjct: 501 NPDSPRCSKHNRLC----ILRVVRKDGENKGRQFYACPLPREAQCGFFEWAD 548
Score = 45.1 bits (105), Expect = 3e-04
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 813 CNCGQEAVLLTVRKEGPNRGRQFFKCNGG---SCNFFLWADSPNPG 855
CN G+ + + TV K GPN G+ FF C G CNFF WA++ PG
Sbjct: 554 CNHGKRSTMKTVLKIGPNNGKNFFVCPLGKEKQCNFFQWAEN-GPG 598
>gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
Length = 518
Score = 45.8 bits (107), Expect = 2e-04
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 901 QPSVTRTVQKDGPNKGRQFHTCAKPR------EQQCGFFQW 935
+P V RTV+K GPN GR+F+ CA+PR +C FF W
Sbjct: 474 EPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLW 514
Score = 39.7 bits (91), Expect = 0.014
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 784 ADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQE-AVLLTVRKEGPNRGRQFFKC---- 838
A + + K L + AG + C +E V+ TV+K GPN GR+F+ C
Sbjct: 440 AKTSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPR 499
Query: 839 -----NGGSCNFFLWA 849
CNFFLW+
Sbjct: 500 GPPTDPSSRCNFFLWS 515
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.4 bits (93), Expect = 0.008
Identities = 32/108 (29%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 850 DSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQ 909
D+ PG GPP LA P PPGP G G PG +GT L P +
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLG 735
Query: 910 KDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRT 957
GP + E PG G P G RG T
Sbjct: 736 SPGPKGDK-------------------GEPGGPGADGVPGKDGPRGPT 764
Score = 33.9 bits (76), Expect = 0.79
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 855 GAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSG 894
G GGPP +A P G+ PPGP G G+PG +G
Sbjct: 834 GEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG 873
Score = 30.4 bits (67), Expect = 8.7
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 853 NPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKDG 912
+PG GPP P A PPGP +G G G SG + + G
Sbjct: 196 SPGYQGPPG---EPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKG 252
Query: 913 P--------NKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRG 955
P KG + + + G EN PG +GAP G RG
Sbjct: 253 PAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRG 303
>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
Length = 691
Score = 38.5 bits (88), Expect = 0.032
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 799 LPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKC-------NGGSCNFFLW 848
L P +G+ C CG+ + L V GPN G+ F+ C N C +F W
Sbjct: 583 LQEPWKSGKMTPPLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKW 639
Score = 35.8 bits (81), Expect = 0.21
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 897 CLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQ----CGFFQW 935
C C + S V +GPN G+ F+ C + Q+ CG+F+W
Sbjct: 597 CKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKW 639
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 37.0 bits (84), Expect = 0.093
Identities = 43/162 (26%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 741 DDTLREILDLRFSGGPPRASQPSGRLQANQSLNRMDNSQHPQPADSRQTGSSKALAQTLP 800
DD+ L R +G P RA RL + ++ + +P ++R G S
Sbjct: 128 DDSCPRKLCSRSAGLPERALACRERLAGVEEVSCL------RPREARDGGMSSPGCDRRS 181
Query: 801 PPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCNGGSCNFFLWADSPNPG----- 855
P + E + V + VRK+ +G +C G+ +F LW D G
Sbjct: 182 PTLSKEEPPGRPLTSSPDPVPVRVRKKWRRQGAHS-ECEEGAGDF-LWLDQSPRGDNLLS 239
Query: 856 AGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSC 897
G PP +A SLG P P PG+ GSG C
Sbjct: 240 VGDPPQVADLE---SLGGPCRPPSPKDTGSGPGEPGGSGAGC 278
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 36.6 bits (83), Expect = 0.12
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 842 SCNFFLWADSPNPGAGGPPALAYRPLGASLGC---PPGPGIHLGGFGNPGDGSGS 893
+ N +LW + P G GGPP+ A A LG PP PG G F P +G+
Sbjct: 49 AANPYLWLNGP--GVGGPPSAAAAAAAAYLGAPPPPPPPGAAAGPFLQPPPAAGT 101
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 36.2 bits (82), Expect = 0.16
Identities = 50/212 (23%), Positives = 77/212 (36%), Gaps = 31/212 (14%)
Query: 774 RMDNSQHPQPADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGR 833
R D +H + + SR S + P + + ES +C R P G+
Sbjct: 163 RRDEKRHKKQSRSRPRKSHRHRHHRCPSRSQSSESRPSSCESRH-------RGRSPEEGQ 215
Query: 834 QFFKCNGGSCNFFLWADSPNPGAGGPPALAYRPLG--ASLGCPPGPGIHLGGFGNPGD-- 889
+ + + C+ L DSP + PP+ + LG ++ G G G F
Sbjct: 216 KSRRRHSRRCSKTLCKDSPEAQSSRPPSQPLQMLGYLSARGVITGSGSAADLFTKTASPL 275
Query: 890 ----------GSGSGTSCLCSQPSV-TRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDE 938
SG+ TS S PS T + + G KG +K RE G
Sbjct: 276 TTSRGRSQEYDSGNDTS---SPPSTQTSSARSRGQEKGSPSGGLSKSRELNSG------N 326
Query: 939 NTAPGTSGAPSWTGDRGRTLESEARSKRPRAS 970
+ G S S ++G LE+ + + R R S
Sbjct: 327 TSDSGNSFTTSSPQNKGAMLENLSPTSRGRES 358
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 34.7 bits (78), Expect = 0.46
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 23/140 (16%)
Query: 852 PNPGAGGPPA-------LAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSV 904
P PGAG PP+ L S PP PG G PG G G G++ P
Sbjct: 29 PGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPG----PGPGPGPGSTSRRLDPKE 84
Query: 905 TRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLESEARS 964
Q+ +Q E E A G +G + G R RTL+ ++R+
Sbjct: 85 PLGNQRAASPTPKQASATTPGHESP-------RETRAQGPAGQEA-DGPR-RTLQVDSRT 135
Query: 965 KRPRAS---SSDMGSTAKKP 981
+R S S D GST P
Sbjct: 136 QRSGRSPSVSPDRGSTPTSP 155
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 34.7 bits (78), Expect = 0.46
Identities = 35/107 (32%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 854 PGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSC-----LCSQPSVTRTV 908
PG GPP L P GA++ PPGP G G GD G S L QP
Sbjct: 376 PGIQGPPGLP-GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLP 434
Query: 909 QKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRG 955
GP A P DE PG G P GD+G
Sbjct: 435 GPPGP---------AGPHIPPS------DEICEPGPPGPPGSPGDKG 466
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 34.7 bits (78), Expect = 0.46
Identities = 35/107 (32%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 854 PGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSC-----LCSQPSVTRTV 908
PG GPP L P GA++ PPGP G G GD G S L QP
Sbjct: 376 PGIQGPPGLP-GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLP 434
Query: 909 QKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRG 955
GP A P DE PG G P GD+G
Sbjct: 435 GPPGP---------AGPHIPPS------DEICEPGPPGPPGSPGDKG 466
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 34.7 bits (78), Expect = 0.46
Identities = 35/107 (32%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 854 PGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSC-----LCSQPSVTRTV 908
PG GPP L P GA++ PPGP G G GD G S L QP
Sbjct: 376 PGIQGPPGLP-GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLP 434
Query: 909 QKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRG 955
GP A P DE PG G P GD+G
Sbjct: 435 GPPGP---------AGPHIPPS------DEICEPGPPGPPGSPGDKG 466
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 34.7 bits (78), Expect = 0.46
Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 28/124 (22%)
Query: 850 DSPNPGAGGPPALAYRP-------------LGASLGCPPGPGIH-----LGGFGNPGDGS 891
DS GA GPP P L LG P PG+ G G+PGD
Sbjct: 1233 DSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVG 1292
Query: 892 GSGTSCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWT 951
G G +P K GP+ H + RE + G PG G P T
Sbjct: 1293 GPGPPGASGEPGAPGPPGKRGPSG----HMGREGREGEKG------AKGEPGPDGPPGRT 1342
Query: 952 GDRG 955
G G
Sbjct: 1343 GPMG 1346
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 33.9 bits (76), Expect = 0.79
Identities = 49/192 (25%), Positives = 64/192 (33%), Gaps = 45/192 (23%)
Query: 761 QPSGRLQANQSLNRMDNSQHPQ----PADSRQTGSSKALAQTL--------------PPP 802
Q + Q Q LN +D S P P+ + G S A A PPP
Sbjct: 117 QQQQQQQQQQQLNHVDGSSKPAVLAAPSGLERYGLSAAAAAAAAAAAAVEQRSRFEYPPP 176
Query: 803 TAAGESNSVTCNC-----GQEAVLLTVRKEGPNR-GRQFFKCNGGSCNFF--------LW 848
+ S+S T G +EGP RQ + + + L
Sbjct: 177 PVSLGSSSHTARLPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSAAASVASRRGTHGGLV 236
Query: 849 ADSPNPGAGGPPALAYRP----------LGASLGCPPGPGIHLGGFGNP---GDGSGSGT 895
PNPG GG P L P ++ PP P LG G P G+ G
Sbjct: 237 TGLPNPGGGGGPQLTVPPNLLPQTLLNGPASAAVLPPPPPHALGSRGPPTPAPPGAPGGP 296
Query: 896 SCLCSQPSVTRT 907
+CL P V+ T
Sbjct: 297 ACLGGTPGVSAT 308
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 33.5 bits (75), Expect = 1.0
Identities = 33/111 (29%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 854 PGAGGPPALAYRPLGASLGCPP----GPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQ 909
PG GG A Y G LG P GP G G PG G + +P T
Sbjct: 71 PGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAG 130
Query: 910 KDGP-----NKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRG 955
GP G H R + G PGT G P + G RG
Sbjct: 131 ARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRG 181
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 33.1 bits (74), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 851 SPNPGAGGPPALAYRPLGASLGCPPGPGIHLG 882
+P PG GPP P+G +G PPG G +G
Sbjct: 183 APPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 851 SPNPGAGGPPALAYRPLGASLGCPPGPGIHLG 882
+P PG GPP P+G +G PPG G +G
Sbjct: 183 APPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 33.1 bits (74), Expect = 1.3
Identities = 40/150 (26%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 853 NPGAGGPPAL-AYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKD 911
N G G P L + L G PPGP LG GNPG+ G P +
Sbjct: 971 NRGVPGMPGLKGLKGLPGPAG-PPGPRGDLGSTGNPGEPGLRGI------PGSMGNMGMP 1023
Query: 912 GPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLESEARSKRPRASS 971
G +KG++ G + PG G GD+G SE P +
Sbjct: 1024 G-SKGKR------------GTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPT 1070
Query: 972 SDMGSTAKKPRKCSLCH--QPGHTRPFCPQ 999
D G +K + PGH P P+
Sbjct: 1071 GDPGLPGDMGKKGEMGQPGPPGHLGPAGPE 1100
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 33.1 bits (74), Expect = 1.3
Identities = 40/150 (26%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 853 NPGAGGPPAL-AYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKD 911
N G G P L + L G PPGP LG GNPG+ G P +
Sbjct: 971 NRGVPGMPGLKGLKGLPGPAG-PPGPRGDLGSTGNPGEPGLRGI------PGSMGNMGMP 1023
Query: 912 GPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLESEARSKRPRASS 971
G +KG++ G + PG G GD+G SE P +
Sbjct: 1024 G-SKGKR------------GTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPT 1070
Query: 972 SDMGSTAKKPRKCSLCH--QPGHTRPFCPQ 999
D G +K + PGH P P+
Sbjct: 1071 GDPGLPGDMGKKGEMGQPGPPGHLGPAGPE 1100
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 33.1 bits (74), Expect = 1.3
Identities = 40/150 (26%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 853 NPGAGGPPAL-AYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKD 911
N G G P L + L G PPGP LG GNPG+ G P +
Sbjct: 971 NRGVPGMPGLKGLKGLPGPAG-PPGPRGDLGSTGNPGEPGLRGI------PGSMGNMGMP 1023
Query: 912 GPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLESEARSKRPRASS 971
G +KG++ G + PG G GD+G SE P +
Sbjct: 1024 G-SKGKR------------GTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPT 1070
Query: 972 SDMGSTAKKPRKCSLCH--QPGHTRPFCPQ 999
D G +K + PGH P P+
Sbjct: 1071 GDPGLPGDMGKKGEMGQPGPPGHLGPAGPE 1100
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 33.1 bits (74), Expect = 1.3
Identities = 40/150 (26%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 853 NPGAGGPPAL-AYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKD 911
N G G P L + L G PPGP LG GNPG+ G P +
Sbjct: 971 NRGVPGMPGLKGLKGLPGPAG-PPGPRGDLGSTGNPGEPGLRGI------PGSMGNMGMP 1023
Query: 912 GPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLESEARSKRPRASS 971
G +KG++ G + PG G GD+G SE P +
Sbjct: 1024 G-SKGKR------------GTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPT 1070
Query: 972 SDMGSTAKKPRKCSLCH--QPGHTRPFCPQ 999
D G +K + PGH P P+
Sbjct: 1071 GDPGLPGDMGKKGEMGQPGPPGHLGPAGPE 1100
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 32.7 bits (73), Expect = 1.8
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 855 GAGGPPALAYRPLGASLGCPPGPGIHLG-GFGNPGDGSGSGTSCLCSQPSVTR 906
G GPP + P PPGPG +G GF D GSG++ L ++P ++R
Sbjct: 709 GQAGPPGVMGPPGPPGPPGPPGPGCTMGLGF---EDTEGSGSTQLLNEPKLSR 758
>gi|37622910 cholinergic receptor, muscarinic 1 [Homo sapiens]
Length = 460
Score = 32.7 bits (73), Expect = 1.8
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 881 LGGFGNPGDGSGSGTSCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENT 940
L G PG G GS +S SQP + + GR C PR Q + W +E
Sbjct: 225 LQGSETPGKGGGSSSSSERSQPGAEGSPETP---PGRCCRCCRAPRLLQA--YSWKEEEE 279
Query: 941 APGTSGAPSWTGDRGRTLESEARSKRPRASSSDMGSTAKKPR 982
S S T G SE K P T + PR
Sbjct: 280 EDEGS-MESLTSSEGEEPGSEVVIKMPMVDPEAQAPTKQPPR 320
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 32.7 bits (73), Expect = 1.8
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 692 PDSVLEASRD-----SSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCD---DT 743
P S+L SR+ S+VC VC + L+ S P C GC +
Sbjct: 961 PFSLLFLSRERGKCPSTVCGVCGKPFACKSALEIHYRSHTKERPFVCALCRRGCSTMGNL 1020
Query: 744 LREILDLRFSGGPPRASQPSGRLQANQSLNRMDNSQHPQPADSRQTGSSKALAQTLPPPT 803
+ +L R P + P+ L +QS + +S P G KA+A PP
Sbjct: 1021 KQHLLTHRLKELPSQLFDPNFALGPSQSTPSLISSAAPTMIKMEVNGHGKAMALGEGPPL 1080
Query: 804 AAG 806
AG
Sbjct: 1081 PAG 1083
>gi|31881740 solute carrier family 12 (potassium/chloride
transporters), member 9 [Homo sapiens]
Length = 914
Score = 32.3 bits (72), Expect = 2.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 782 QPADSRQTGSSKALAQTLPPPTAAGESNSV 811
+PADS + GSS AL+ PPP A G ++
Sbjct: 649 EPADSTREGSSPALSTLFPPPRAPGSPRAL 678
>gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
Length = 1162
Score = 32.3 bits (72), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 816 GQEAVLLTVRKEGPNRGRQFFKCNGGSCNFFLWADSP 852
G L T ++GPN+G+ F+ C +C+F D P
Sbjct: 10 GTFCFLKTGVRDGPNKGKSFYVCRADTCSFVRATDIP 46
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 32.0 bits (71), Expect = 3.0
Identities = 43/171 (25%), Positives = 57/171 (33%), Gaps = 27/171 (15%)
Query: 847 LWADSPNPGAGGPPALAYRPLGASLGCPP-----------GPGIHLGGFGNPGDGSGSGT 895
LWA +PN G P A A +LG P GP + G +P GSG+G
Sbjct: 372 LWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAGSRGGPSVPDPGPASPYSGSGNGG 431
Query: 896 SCLCSQ--PSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTA---PGTSGAPSW 950
++ + T D + G F A W A P SG +
Sbjct: 432 FAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTVPAAATIWAPFERAAPLPAFSGCSTV 491
Query: 951 TGDRGRTLESEARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCPQNR 1001
G G P A+ + S A PR +PG R P +R
Sbjct: 492 NGAPG-----------PPAAGARRSSGAGTPRHSPTLPEPGGLRLELPLSR 531
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 32.0 bits (71), Expect = 3.0
Identities = 33/117 (28%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 782 QPADSRQTGSSKALAQTLP--PPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCN 839
+P S Q S A+ T P PP AA ++ N G A GP +
Sbjct: 306 KPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNS 365
Query: 840 GGSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTS 896
G +P A PPA P G S P P + G G G G G +S
Sbjct: 366 G--------TPAPYAQAVAPPA----PSGPSTTQPRPPSVQPSGGGGGGSGGGGSSS 410
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 31.6 bits (70), Expect = 3.9
Identities = 51/206 (24%), Positives = 74/206 (35%), Gaps = 25/206 (12%)
Query: 761 QPSGRLQANQSLNRMDNSQHPQPADSRQTG--SSKALAQTLPPPTAAGESN--SVTCNCG 816
QPSG+ + Q + Q P PA TG +S A A TLP T S+ +
Sbjct: 373 QPSGQSEYLQQ--HVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNASSVGAQLMGAS 430
Query: 817 QEAVLLTVRKEGPNRGRQFFKCNGGSCNFFLWADSPNP-----GAGGPPALAYRPLGAS- 870
+ + GP +G Q C P GAG P ++ +G S
Sbjct: 431 SQPSEAMAPRTGPAQGGQVAPCQPTGVPPATVGGVVQPCLGPAGAGQPQSVPPPQMGGSG 490
Query: 871 --LGCPPGPGIHLGGFGN-----PGDGSGSGTSCLCSQPSVTRTVQKDGPNKGRQFHTCA 923
P GP + G N P S ++ + P+V + + ++ HT
Sbjct: 491 PLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQ---SQQLSSHT-- 545
Query: 924 KPREQQCGFFQWVDENTAPGTSGAPS 949
P + Q V APGT AP+
Sbjct: 546 -PVSRSSSIIQHVGLPLAPGTHSAPT 570
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,506,151
Number of Sequences: 37866
Number of extensions: 2296117
Number of successful extensions: 8245
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 8029
Number of HSP's gapped (non-prelim): 276
length of query: 1001
length of database: 18,247,518
effective HSP length: 112
effective length of query: 889
effective length of database: 14,006,526
effective search space: 12451801614
effective search space used: 12451801614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.