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Search of human proteins with 239749236
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749236 PREDICTED: hypothetical protein XP_002346973 [Homo
sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754692 PREDICTED: hypothetical protein [Homo sapiens] 230 2e-61
gi|239749236 PREDICTED: hypothetical protein XP_002346973 [Homo ... 230 2e-61
gi|239743328 PREDICTED: hypothetical protein XP_002342823 [Homo ... 230 2e-61
gi|239509011 PREDICTED: similar to zinc finger domain-related pr... 230 2e-61
gi|13128976 Yip1 domain family, member 2 [Homo sapiens] 35 0.013
gi|52317132 olfactory receptor, family 5, subfamily T, member 1 ... 30 0.42
gi|156105681 presenilin 2 isoform 2 [Homo sapiens] 28 2.1
gi|156105679 presenilin 2 isoform 1 [Homo sapiens] 28 2.1
gi|4507033 solute carrier family 5 (sodium/glucose cotransporter... 27 2.7
gi|223718060 opioid receptor, mu 1 isoform MOR-1G1 [Homo sapiens] 27 3.5
gi|223718055 opioid receptor, mu 1 isoform MOR-1H [Homo sapiens] 27 3.5
gi|117940060 opioid receptor, mu 1 isoform MOR-1 [Homo sapiens] 27 3.5
gi|223718712 opioid receptor, mu 1 isoform MOR-1B5 [Homo sapiens] 27 3.5
gi|223718719 opioid receptor, mu 1 isoform MOR-1B2 [Homo sapiens] 27 3.5
gi|223718087 opioid receptor, mu 1 isoform MOR1-K1 [Homo sapiens] 27 3.5
gi|223718077 opioid receptor, mu 1 isoform MOR-1B3 [Homo sapiens] 27 3.5
gi|223718066 opioid receptor, mu 1 isoform MOR-1G2 [Homo sapiens] 27 3.5
gi|223718716 opioid receptor, mu 1 isoform MOR-1B1 [Homo sapiens] 27 3.5
gi|4504059 gonadotropin-releasing hormone receptor isoform 1 [Ho... 27 3.5
gi|63477962 opioid receptor, delta 1 [Homo sapiens] 27 3.5
gi|117940058 opioid receptor, mu 1 isoform MOR-1A [Homo sapiens] 27 3.5
gi|223717969 opioid receptor, mu 1 isoform MOR-1B4 [Homo sapiens] 27 3.5
gi|117940055 opioid receptor, mu 1 isoform MOR-1O [Homo sapiens] 27 3.5
gi|117940054 opioid receptor, mu 1 isoform MOR-1X [Homo sapiens] 27 3.5
gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens] 27 3.5
gi|53828742 olfactory receptor, family 2, subfamily T, member 3 ... 27 3.5
gi|169168037 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|49227741 olfactory receptor, family 2, subfamily T, member 34... 27 4.6
gi|31542671 liver regeneration p-53 related protein [Homo sapiens] 26 6.0
gi|157743252 pecanex-like 3 [Homo sapiens] 26 6.0
>gi|239754692 PREDICTED: hypothetical protein [Homo sapiens]
Length = 108
Score = 230 bits (586), Expect = 2e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
Query: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
>gi|239749236 PREDICTED: hypothetical protein XP_002346973 [Homo
sapiens]
Length = 108
Score = 230 bits (586), Expect = 2e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
Query: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
>gi|239743328 PREDICTED: hypothetical protein XP_002342823 [Homo
sapiens]
Length = 108
Score = 230 bits (586), Expect = 2e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
Query: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
>gi|239509011 PREDICTED: similar to zinc finger domain-related
protein TSRM [Homo sapiens]
Length = 108
Score = 230 bits (586), Expect = 2e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1 MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
Query: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61 FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
>gi|13128976 Yip1 domain family, member 2 [Homo sapiens]
Length = 316
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 29 QRGVQANQTPVLFLHISCVY-YSLYLFFLFCCLFLIP---LEQKMTTSPLPYPCDNIHVT 84
++GVQ P FL C+Y YSL++F L+LIP L+ L + T
Sbjct: 187 RKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFT 246
Query: 85 VWPLGEVLMETRM 97
+WP+ V +TR+
Sbjct: 247 LWPV--VREDTRL 257
>gi|52317132 olfactory receptor, family 5, subfamily T, member 1
[Homo sapiens]
Length = 326
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 6 VHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLF 57
+HT ATF+ SF C ++ R V N P+L + S + LFF F
Sbjct: 170 IHTVATFSLSF-------CGSNEIRHVFCNMPPLLAISCSDTHVIQLLFFYF 214
>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
Length = 447
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 41 FLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWES 100
F+H + SL L FLF ++L + K + YP + +TVW G V M W+
Sbjct: 167 FIHGWLIMSSLMLLFLFTYIYLGEV-LKTYNVAMDYP--TLLLTVWNFGAVGMVCIHWKG 223
Query: 101 KIGLE 105
+ L+
Sbjct: 224 PLVLQ 228
>gi|156105679 presenilin 2 isoform 1 [Homo sapiens]
Length = 448
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 41 FLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWES 100
F+H + SL L FLF ++L + K + YP + +TVW G V M W+
Sbjct: 167 FIHGWLIMSSLMLLFLFTYIYLGEV-LKTYNVAMDYP--TLLLTVWNFGAVGMVCIHWKG 223
Query: 101 KIGLE 105
+ L+
Sbjct: 224 PLVLQ 228
>gi|4507033 solute carrier family 5 (sodium/glucose cotransporter),
member 2 [Homo sapiens]
Length = 672
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 32 VQANQTPVLFLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLP 75
VQ + P + +Y+++ LFF C L+ L + T+P+P
Sbjct: 512 VQPSACPAFLCGVHYLYFAIVLFF---CSGLLTLTVSLCTAPIP 552
>gi|223718060 opioid receptor, mu 1 isoform MOR-1G1 [Homo sapiens]
Length = 300
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 9 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 41
>gi|223718055 opioid receptor, mu 1 isoform MOR-1H [Homo sapiens]
Length = 493
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 202 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 234
>gi|117940060 opioid receptor, mu 1 isoform MOR-1 [Homo sapiens]
Length = 400
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|223718712 opioid receptor, mu 1 isoform MOR-1B5 [Homo sapiens]
Length = 420
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|223718719 opioid receptor, mu 1 isoform MOR-1B2 [Homo sapiens]
Length = 397
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|223718087 opioid receptor, mu 1 isoform MOR1-K1 [Homo sapiens]
Length = 300
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 9 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 41
>gi|223718077 opioid receptor, mu 1 isoform MOR-1B3 [Homo sapiens]
Length = 403
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|223718066 opioid receptor, mu 1 isoform MOR-1G2 [Homo sapiens]
Length = 319
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 28 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 60
>gi|223718716 opioid receptor, mu 1 isoform MOR-1B1 [Homo sapiens]
Length = 406
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|4504059 gonadotropin-releasing hormone receptor isoform 1 [Homo
sapiens]
Length = 328
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 48 YYSLYLFFLFCCLFLIPL 65
+ + Y FF F CLF+IPL
Sbjct: 207 HQAFYNFFTFSCLFIIPL 224
>gi|63477962 opioid receptor, delta 1 [Homo sapiens]
Length = 372
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ + WP GE+L
Sbjct: 88 IFNLALADALATSTLPFQSAKYLMETWPFGELL 120
>gi|117940058 opioid receptor, mu 1 isoform MOR-1A [Homo sapiens]
Length = 392
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|223717969 opioid receptor, mu 1 isoform MOR-1B4 [Homo sapiens]
Length = 389
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|117940055 opioid receptor, mu 1 isoform MOR-1O [Homo sapiens]
Length = 418
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|117940054 opioid receptor, mu 1 isoform MOR-1X [Homo sapiens]
Length = 446
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
+F + L + TS LP+ N + WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141
>gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]
Length = 515
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 4 LLVHTAAT--FNYSFRKIRGLLCPQHKQRGVQANQTPVL--FLHISCVYYSLYLFFLFCC 59
++ H AAT F+ + R L +Q + A+Q P L F+HIS Y + L +
Sbjct: 107 IIFHCAATVRFDDTLRHAVQLNVTATRQLLLMASQMPKLEAFIHISTAYSNCNLKHIDEV 166
Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWP 87
++ P+E K L + D I + P
Sbjct: 167 IYPCPVEPKKIIDSLEWLDDAIIDEITP 194
>gi|53828742 olfactory receptor, family 2, subfamily T, member 3
[Homo sapiens]
Length = 318
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 1 MVGLLVHTAATFNYSF---RKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLF 57
MV L+ T T ++ F RKI C +TP L L +SC SLY ++
Sbjct: 158 MVDGLLLTPITMSFPFCQSRKILSFFC-----------ETPAL-LKLSCSDVSLYKTLMY 205
Query: 58 CCLFLIPLEQKMTTS 72
C L+ L M S
Sbjct: 206 LCCILMLLAPIMVIS 220
>gi|169168037 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 45 SCVYYSLYLFFLFCCLFL---IPLEQKMTTSPLPYPCDNIHV 83
+CVY +Y++ L+ C+++ + + M T Y C +HV
Sbjct: 125 TCVYIHVYMYTLYVCIYVYMCVCIHVYMHTYVHVYMCVCVHV 166
>gi|49227741 olfactory receptor, family 2, subfamily T, member 34
[Homo sapiens]
Length = 318
Score = 26.6 bits (57), Expect = 4.6
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 1 MVGLLVHTAATFNYSF---RKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLF 57
MV L+ T T ++ F RKI C +TP L L +SC SLY +
Sbjct: 158 MVDGLLLTPITMSFPFCQSRKILSFFC-----------ETPAL-LKLSCSDVSLYKMLTY 205
Query: 58 CCLFLIPLEQKMTTS 72
C L+ L M S
Sbjct: 206 LCCILMLLTPIMVIS 220
>gi|31542671 liver regeneration p-53 related protein [Homo sapiens]
Length = 540
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 48 YYSLYLFFLFCCLFLIP 64
YY+LY LFC F IP
Sbjct: 101 YYTLYSVILFCVFFWIP 117
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 24 CPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLP 75
C + VQ + + H + YS ++F CCL + L+ + P P
Sbjct: 831 CQYSLLKSVQPDAASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGSAQPFP 882
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.143 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,303,800
Number of Sequences: 37866
Number of extensions: 177404
Number of successful extensions: 497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 31
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.