Search of human proteins with 239748613

Search of human proteins with 239748613

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748613 PREDICTED: hypothetical protein XP_002346732 [Homo
sapiens]
         (67 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]           140   2e-34
gi|239748613 PREDICTED: hypothetical protein XP_002346732 [Homo ...   140   2e-34
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ...   140   2e-34
gi|46249382 paired-like homeobox 2a [Homo sapiens]                     26   5.9  
gi|239744970 PREDICTED: hypothetical protein XP_002343319 [Homo ...    26   7.8  

>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score =  140 bits (354), Expect = 2e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1   MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA 60
           MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA
Sbjct: 208 MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA 267

Query: 61  QGHRGGH 67
           QGHRGGH
Sbjct: 268 QGHRGGH 274


>gi|239748613 PREDICTED: hypothetical protein XP_002346732 [Homo
          sapiens]
          Length = 67

 Score =  140 bits (354), Expect = 2e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA 60
          MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA
Sbjct: 1  MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA 60

Query: 61 QGHRGGH 67
          QGHRGGH
Sbjct: 61 QGHRGGH 67


>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
           sapiens]
          Length = 274

 Score =  140 bits (354), Expect = 2e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1   MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA 60
           MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA
Sbjct: 208 MRRGCRTLTARRPLDSGRGLSPLILAWVPALSGPALNSGKWELQARSVRVWALMSLGMVA 267

Query: 61  QGHRGGH 67
           QGHRGGH
Sbjct: 268 QGHRGGH 274


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 17  GRGLSPLILAWVPALSGPALNSG 39
           G G + L+ AW PA SGP   SG
Sbjct: 244 GAGAAELLKAWQPAESGPGPFSG 266


>gi|239744970 PREDICTED: hypothetical protein XP_002343319 [Homo
           sapiens]
          Length = 368

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 11  RRPLDSGRGLSPLILAWVP--ALSGPALN----SGKWELQARSV 48
           RRP    RG + L   WVP   L GP+L+    S + +LQAR V
Sbjct: 196 RRPRPELRGTTQLSSPWVPRSQLPGPSLSRPLRSLRAKLQARHV 239


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,744,128
Number of Sequences: 37866
Number of extensions: 94378
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 5
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.