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Search of human proteins with 239748281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 496 e-141
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 496 e-141
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 54 1e-07
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 53 2e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 5e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 3e-06
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 49 5e-06
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 48 7e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 7e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 7e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 7e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 44 1e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 44 1e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 44 1e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 44 1e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 44 2e-04
gi|63025196 serine arginine rich protein-specific kinase 3 [Homo... 44 2e-04
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 44 2e-04
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 44 2e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 2e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 2e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 2e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 43 2e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 43 2e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 43 2e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 43 2e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 43 3e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 43 3e-04
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 43 3e-04
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 496 bits (1277), Expect = e-141
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MNYTSLPYLATCSPLRVSSGWMIDIVQQLSTQSNNALERARFLQTLCTEGAPSTPWDTSG 60
MNYTSLPYLATCSPLRVSSGWMIDIVQQLSTQSNNALERARFLQTLCTEGAPSTPWDTSG
Sbjct: 1 MNYTSLPYLATCSPLRVSSGWMIDIVQQLSTQSNNALERARFLQTLCTEGAPSTPWDTSG 60
Query: 61 APGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRL 120
APGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRL
Sbjct: 61 APGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRL 120
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG 180
PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG
Sbjct: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG 180
Query: 181 LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDPRIILFNLHKF 240
LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDPRIILFNLHKF
Sbjct: 181 LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDPRIILFNLHKF 240
Query: 241 ED 242
ED
Sbjct: 241 ED 242
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 496 bits (1277), Expect = e-141
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MNYTSLPYLATCSPLRVSSGWMIDIVQQLSTQSNNALERARFLQTLCTEGAPSTPWDTSG 60
MNYTSLPYLATCSPLRVSSGWMIDIVQQLSTQSNNALERARFLQTLCTEGAPSTPWDTSG
Sbjct: 1 MNYTSLPYLATCSPLRVSSGWMIDIVQQLSTQSNNALERARFLQTLCTEGAPSTPWDTSG 60
Query: 61 APGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRL 120
APGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRL
Sbjct: 61 APGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRL 120
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG 180
PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG
Sbjct: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG 180
Query: 181 LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDPRIILFNLHKF 240
LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDPRIILFNLHKF
Sbjct: 181 LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDPRIILFNLHKF 240
Query: 241 ED 242
ED
Sbjct: 241 ED 242
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 53.9 bits (128), Expect = 1e-07
Identities = 52/173 (30%), Positives = 62/173 (35%), Gaps = 21/173 (12%)
Query: 52 PSTPW----DTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
PS+P D + A P + G +P A GR R AG AG +RR R
Sbjct: 338 PSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLH 167
A R PR PRG + + G G APGPGP G H
Sbjct: 398 SSASAPRRRGRRRPRPAP---PRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGH 454
Query: 168 GRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPG 220
G+R P R A PSP GRR G E + +R PG
Sbjct: 455 GKRAKERPP------------RARPASTSPSPGAHGRR--GGPEGKSSSRSPG 493
Score = 43.1 bits (100), Expect = 2e-04
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Query: 85 RQARRAGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQ 144
R+ + + P E RR+ R + PS+ P +HR E ++ Q
Sbjct: 233 RKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQ 292
Query: 145 RGGGARAPGPGPGSRQPLP---------AGLHGRR--KVGSAPDRHGLGAGSAGARGNKA 193
R G+R+P P GS P +G HG R S PD+ + S R A
Sbjct: 293 RSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKP--SSPSPRVRDKAA 350
Query: 194 VVGPSPPPPGR 204
P+PP G+
Sbjct: 351 AAAPTPPARGK 361
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 53.1 bits (126), Expect = 2e-07
Identities = 61/195 (31%), Positives = 80/195 (41%), Gaps = 20/195 (10%)
Query: 36 ALERARFLQTLCTEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA----- 90
A +A QT + P P +G PGP G+ A+ P G + +
Sbjct: 464 AQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPP 523
Query: 91 GRAGPEVEEVKRRARRLLQE--PARDPSILRLPRVVGVPGPRGRR----HRGEQQQQREQ 144
GR G AR L + P D LP G+PG +G+R H G+ E
Sbjct: 524 GRVGKMGRPGADGARGLPGDTGPKGDRGFDGLP---GLPGEKGQRGDFGHVGQPGPPGED 580
Query: 145 RGGGARAPGPGPGSR--QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP--SPP 200
GA P PGP + +P P GL G R R G+ G GA G K VGP P
Sbjct: 581 GERGAEGP-PGPTGQAGEPGPRGLLGPRGSPGPTGRPGV-TGIDGAPGAKGNVGPPGEPG 638
Query: 201 PPGRRLHSGSESRLG 215
PPG++ + GS+ G
Sbjct: 639 PPGQQGNHGSQGLPG 653
Score = 38.5 bits (88), Expect = 0.005
Identities = 55/177 (31%), Positives = 65/177 (36%), Gaps = 53/177 (29%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG RT P A P GR GPE R + P +P +L
Sbjct: 1331 GEPGPDG-PPG--RTGPMGARGP-------PGRVGPE-------GLRGIPGPVGEPGLLG 1373
Query: 120 LPRVVGVPGPRG----------------RRH---------RGEQQQQREQRGGGARAPGP 154
P +G PGP G + H GE ++ +Q G + P P
Sbjct: 1374 APGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGP-P 1432
Query: 155 GPGSRQPLPAGLHGRRKVGSAPDRHG-LG-------AGSAGARGNKAVVGPSPPPPG 203
GP P P G G P G LG GS G RG+ GP P PPG
Sbjct: 1433 GP-KGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGP-PGPPG 1487
Score = 35.4 bits (80), Expect = 0.045
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 37/190 (19%)
Query: 49 EGAPSTPWDTS--------GAPGPAGISPGVVRTAPSLADHP-----LGRQARR-----A 90
+GAP P + G PGP G P + HP LG Q + A
Sbjct: 859 DGAPGIPGEKGLPGLQGPPGFPGPKG--PPGHQGKDGRPGHPGQRGELGFQGQTGPPGPA 916
Query: 91 GRAGPEVE--EVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGG 148
G GP+ + EV R P P LP + G G +G G ++ G
Sbjct: 917 GVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGEL--GPPGPLGKEGPAG 974
Query: 149 ARA-PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRL- 206
R PGP G P P GL G + G GA G+ GP P G L
Sbjct: 975 LRGFPGPKGGPGDPGPTGLKGDKG----------PPGPVGANGSPGERGPLGPAGGIGLP 1024
Query: 207 -HSGSESRLG 215
SGSE +G
Sbjct: 1025 GQSGSEGPVG 1034
Score = 35.4 bits (80), Expect = 0.045
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 125 GVPGPRGRR----HRGEQQQQREQRGGGARAPGPGPGSRQPLPA-------GLHGRRKVG 173
G PGP G+R H G + ++ E+ G P PG P+ A G G R +
Sbjct: 1304 GAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIP 1363
Query: 174 SAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIALLDLCDP 230
GL G+ G G +GPS PG + +G + G I L+ L P
Sbjct: 1364 GPVGEPGL-LGAPGQMGPPGPLGPS-GLPGLKGDTGPKGE-----KGHIGLIGLIGP 1413
Score = 31.6 bits (70), Expect = 0.65
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 18/97 (18%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHG 180
P G PG +G+ R QR + G + PG PAG+ G +
Sbjct: 880 PGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPG-------PAGVLGPQG--------- 923
Query: 181 LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR 217
G G G + GP P PPG + G E R GA+
Sbjct: 924 -KTGEVGPLGERGPPGP-PGPPGEQGLPGLEGREGAK 958
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.0 bits (123), Expect = 5e-07
Identities = 60/181 (33%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 52 PSTPWDTSGAPGPAGI-----SPGVVRT--APSLADHPLGRQARRAGRAGPEVEEVKRRA 104
P+ P +GAPG G +PG + AP L P R A AG GP+ +
Sbjct: 693 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA--AGLPGPKGDRGDAGP 750
Query: 105 RRLLQEPARDPSILRLPRVVGVPGPRGRR-HRGEQQQQREQRGGGAR-APG----PGPGS 158
+ P +D + L +G PGP G +GE GAR APG PGP
Sbjct: 751 KGADGSPGKD-GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGP-- 807
Query: 159 RQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPP--PPGRRLHSGSESRLGA 216
P PAG G P G G AGA+G+ GP+ P PPG + G+ GA
Sbjct: 808 --PGPAGFAGPPGADGQPGAKG-EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGA 864
Query: 217 R 217
R
Sbjct: 865 R 865
Score = 47.4 bits (111), Expect = 1e-05
Identities = 51/163 (31%), Positives = 61/163 (37%), Gaps = 15/163 (9%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGR--QARRAGRAGPEVEEVKRRARRLLQ 109
P P +G PGP G + P P GR + G GP E+ A
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944
Query: 110 EPARD--PSILRLPRVVGVPGPRGRRH-------RGEQQQQREQRGGGARAPGPGPGSRQ 160
P I VVG+PG RG R GE +Q G R P PGP
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP-PGPMGPP 1003
Query: 161 PL--PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP 201
L P G GR A G GS GA+G++ GP+ PP
Sbjct: 1004 GLAGPPGESGREGAPGAEGSPGRD-GSPGAKGDRGETGPAGPP 1045
Score = 46.6 bits (109), Expect = 2e-05
Identities = 50/161 (31%), Positives = 59/161 (36%), Gaps = 23/161 (14%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRL 107
G P P GAPGP G A P+G + G+ G + E K R
Sbjct: 188 GLPGPP----GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP-GRPG 242
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSR-------Q 160
+ P LP G+PG +G HRG + G P PGS Q
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGMKG--HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ 300
Query: 161 PLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP 201
P GL G R AP G AGARGN G + PP
Sbjct: 301 MGPRGLPGERGRPGAP-------GPAGARGNDGATGAAGPP 334
Score = 44.3 bits (103), Expect = 1e-04
Identities = 58/188 (30%), Positives = 70/188 (37%), Gaps = 30/188 (15%)
Query: 55 PWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEP--- 111
P G+ GP G+ P+ A P G G G + A + P
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP----GADGQPGAKGANGAPGIAGAPGFP 412
Query: 112 -ARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARA-PGPGPGSRQPLPAGLHGR 169
AR PS + P G PGP+G + GE + GA+ PGP P PAG G+
Sbjct: 413 GARGPSGPQGPG--GPPGPKG--NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGK 468
Query: 170 RKVGSAPDRHGL--------GAGSAGARGNKAVVGP--------SPPPPGRRLHSGSESR 213
R P GL G GS G G V GP SP P G + G R
Sbjct: 469 RGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528
Query: 214 LG-ARLPG 220
G A LPG
Sbjct: 529 PGEAGLPG 536
Score = 43.5 bits (101), Expect = 2e-04
Identities = 63/210 (30%), Positives = 74/210 (35%), Gaps = 47/210 (22%)
Query: 52 PSTPWDTSGAPGPAGIS--PGVVR----TAPSLADHPLGRQARRAGRAGPEVEEVKRRAR 105
PS P G PGP G S PG T P+G Q G GP EE KR AR
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ----GPPGPAGEEGKRGAR 472
Query: 106 RL-----LQEPARD---PSILRLPRVVGVPGPRG-------------RRHRGEQQQQREQ 144
L P + P P GV GP+G + GE + E
Sbjct: 473 GEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA 532
Query: 145 RGGGAR-------APGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP 197
GA+ +PGP + P PAG GR P G AG G G K G
Sbjct: 533 GLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG-QAGVMGFPGPKGAAGE 591
Query: 198 S--------PPPPGRRLHSGSESRLGARLP 219
P PPG +G + GA+ P
Sbjct: 592 PGKAGERGVPGPPGAVGPAGKDGEAGAQGP 621
Score = 38.9 bits (89), Expect = 0.004
Identities = 52/175 (29%), Positives = 66/175 (37%), Gaps = 22/175 (12%)
Query: 49 EGAPST--PWDTSGAPGPAGISP--GVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKR 102
+G+P P G PGP GI+ GVV G++ R G GP E K+
Sbjct: 934 KGSPGADGPAGAPGTPGPQGIAGQRGVVGLP--------GQRGERGFPGLPGPSGEPGKQ 985
Query: 103 RARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL 162
E P + P + G PG GR E E G +PG +
Sbjct: 986 GPSGASGERG-PPGPMGPPGLAGPPGESGR----EGAPGAEGSPGRDGSPGAKGDRGETG 1040
Query: 163 PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPP--PPGRRLHSGSESRLG 215
PAG G AP G AG +G RG GP+ P P G R +G + G
Sbjct: 1041 PAGPPGAPGAPGAPGPVG-PAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Score = 37.0 bits (84), Expect = 0.015
Identities = 56/191 (29%), Positives = 73/191 (38%), Gaps = 34/191 (17%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTA--PSLADHP----LGRQARRAGRAGPEVEEVKRR 103
G P P + G PGP G + G+ TA P + H L AG AGP+ E
Sbjct: 236 GKPGRPGER-GPPGPQG-ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP---- 289
Query: 104 ARRLLQEPARDPSILRL-PRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGP-GPGSR 159
P + + ++ PR G+PG RGR R G G A PGP GP
Sbjct: 290 -----GSPGENGAPGQMGPR--GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 342
Query: 160 QPLPAGLHGRRKVGSAPDRHGLG----AGSAGARGNKAVVGPSPPP-----PGRRLHSGS 210
P + + + G R G G G G GP+ P PG + +G+
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 402
Query: 211 ESRLGARLPGF 221
GA PGF
Sbjct: 403 PGIAGA--PGF 411
Score = 35.0 bits (79), Expect = 0.059
Identities = 49/168 (29%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 59 SGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSIL 118
+G PG AG+ T + P G+ G GP ++ + P P
Sbjct: 526 AGRPGEAGLPGAKGLTGSPGSPGPDGK----TGPPGPAGQDGR-------PGPPGPPGAR 574
Query: 119 RLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDR 178
V+G PGP+G GE + E RG PGP PG+ P AG G P
Sbjct: 575 GQAGVMGFPGPKGAA--GEPGKAGE-RG----VPGP-PGAVGP--AGKDGEAGAQGPPGP 624
Query: 179 HGLGA-----GSAGARGNKAVVGPSPPP--PGRRLHSGSESRLGARLP 219
G G AG+ G + + GP+ PP G+ G LGA P
Sbjct: 625 AGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 672
Score = 34.3 bits (77), Expect = 0.10
Identities = 51/182 (28%), Positives = 62/182 (34%), Gaps = 25/182 (13%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEP 111
P+ P +G PG G+ + PS A G R G GP R A P
Sbjct: 648 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGER-GVQGPPGPAGPRGANGA---P 703
Query: 112 ARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRK 171
D + G PG G + Q +RG A PGP P G G
Sbjct: 704 GNDGA----KGDAGAPGAPGSQGAPGLQGMPGERGA-AGLPGPKGDRGDAGPKGADG--- 755
Query: 172 VGSAPDRHGLGA--------GSAGARGNKAVVGPSPP--PPGRRLHSGSESRLGARLPGF 221
+P + G+ G AGA G+K GPS P P G R G G P
Sbjct: 756 ---SPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAG 812
Query: 222 IA 223
A
Sbjct: 813 FA 814
Score = 30.0 bits (66), Expect = 1.9
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 32/108 (29%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G SPG PS A P G + G AG P +D +
Sbjct: 1118 GPPGPPG-SPG--EQGPSGASGPAGPRGP-PGSAGA---------------PGKD-GLNG 1157
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGP--GPGSRQPLPAG 165
LP +G PGPRGR G+ G PGP PG P AG
Sbjct: 1158 LPGPIGPPGPRGR--TGD--------AGPVGPPGPPGPPGPPGPPSAG 1195
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 49.3 bits (116), Expect = 3e-06
Identities = 61/183 (33%), Positives = 73/183 (39%), Gaps = 35/183 (19%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
GAP P G G AG +PG R P LA P R G AGP E + A
Sbjct: 666 GAPGAP----GGKGDAG-APGE-RGPPGLAGAPGLR-----GGAGPPGPEGGKGAAG--- 711
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGG----------GARAP-GP-GPG 157
P P P + G+PG RG + + + GG G R P GP GP
Sbjct: 712 -PPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP- 769
Query: 158 SRQPLPAGLHGRRKVGSAPDRHGLGA--GSAGARGNKAVVGPS--PPPPGRRLHSGSESR 213
P PAG G + G AP G+ GS G RG GP+ P PG+ G +
Sbjct: 770 ---PGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826
Query: 214 LGA 216
GA
Sbjct: 827 RGA 829
Score = 44.7 bits (104), Expect = 7e-05
Identities = 55/194 (28%), Positives = 68/194 (35%), Gaps = 33/194 (17%)
Query: 48 TEGAPSTPWDT--SGAPGPAGIS-----PGVVR-TAPSLADHPLGRQARRAGRAGPEVEE 99
++G P P SG PGP G S PGV+ P D G+ R G GP +
Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQG 606
Query: 100 VKRRARRLLQEPARDPS----------------ILRLPRVVGVPGPRGRRHRGEQQQQRE 143
+ + P+ + LP G PG G+ GE +
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP--GEPGPK-- 662
Query: 144 QRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
G A APG G G G + AP G GAG G G K GP P PPG
Sbjct: 663 ---GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRG-GAGPPGPEGGKGAAGP-PGPPG 717
Query: 204 RRLHSGSESRLGAR 217
G + G R
Sbjct: 718 AAGTPGLQGMPGER 731
Score = 43.5 bits (101), Expect = 2e-04
Identities = 58/199 (29%), Positives = 73/199 (36%), Gaps = 35/199 (17%)
Query: 50 GAPSTPWDTSGAPGPAGIS-PGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
G P P + G PGP GI P + P + H G G E+ + A L
Sbjct: 234 GRPGRPGER-GLPGPPGIKGPAGIPGFPGMKGH--------RGFDGRNGEKGETGAPGLK 284
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHR-GEQQQQREQRGGGARA----------PGP-GP 156
E LP G PGP G R GE+ + GAR PGP GP
Sbjct: 285 GENG-------LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGP 337
Query: 157 GSRQPLPAGLHGRRKVGSAPDRHGLGA----GSAGARGNKAVVGPSPPPPGRRLHSGSES 212
P + +VG A GA G G +G+ GP P PPG G +
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP-PGPPGINGSPGGKG 396
Query: 213 RLG-ARLPGFIALLDLCDP 230
+G A +PG L+ P
Sbjct: 397 EMGPAGIPGAPGLMGARGP 415
Score = 42.4 bits (98), Expect = 4e-04
Identities = 61/182 (33%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Query: 52 PSTPWDTSGAPGPAGISPGVV-------RTAPSLADHPLGRQARRAGRAGPEVEEVK--R 102
P P TSG PG G SPG + PS P G +G AG + E + R
Sbjct: 181 PPGPPGTSGHPGSPG-SPGYQGPPGEPGQAGPSGPPGPPGAIGP-SGPAGKDGESGRPGR 238
Query: 103 RARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-------PG 155
R L P P I + G PG +G HRG + E+ G APG PG
Sbjct: 239 PGERGLPGP---PGIKGPAGIPGFPGMKG--HRGFDGRNGEK--GETGAPGLKGENGLPG 291
Query: 156 P-GSRQPL-PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESR 213
G+ P+ P G G R P G G+ GARG+ GP P PPG GS
Sbjct: 292 ENGAPGPMGPRGAPGERGRPGLPGAAG-ARGNDGARGSDGQPGP-PGPPGTAGFPGSPGA 349
Query: 214 LG 215
G
Sbjct: 350 KG 351
Score = 40.0 bits (92), Expect = 0.002
Identities = 51/168 (30%), Positives = 62/168 (36%), Gaps = 29/168 (17%)
Query: 49 EGAPSTPWDTSGAPGPAGI--SPGVVRTA-PSLADHPLGRQARRA--GRAGPEVEEVKRR 103
+G+P P +G PG AG +PG A P+ G R G AGP
Sbjct: 467 DGSPGEP-GANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGP-------- 517
Query: 104 ARRLLQEPARD-----PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGS 158
R EP RD P + +P G PG G+ G Q E G PGP
Sbjct: 518 -RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKP--GPPGSQGES--GRPGPPGPSGPR 572
Query: 159 RQPLPAGLHGRRKVGSAPDRHGL-----GAGSAGARGNKAVVGPSPPP 201
QP G G + AP ++G G G G G GP PP
Sbjct: 573 GQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620
Score = 40.0 bits (92), Expect = 0.002
Identities = 53/172 (30%), Positives = 63/172 (36%), Gaps = 54/172 (31%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G+P P GAPG G PG V A D A AG GP
Sbjct: 1038 GSPGAP----GAPGHPG-PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSR---------- 1082
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARA----PG-PG-PGSRQPLP 163
G PGP+G R G++ + E+ G + PG PG PGS P P
Sbjct: 1083 ---------------GAPGPQGPR--GDKGETGERGAAGIKGHRGFPGNPGAPGS--PGP 1123
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
AG G GS G G + VGPS PPG+ SG +G
Sbjct: 1124 AGQQG-------------AIGSPGPAGPRGPVGPS-GPPGKDGTSGHPGPIG 1161
Score = 38.5 bits (88), Expect = 0.005
Identities = 55/169 (32%), Positives = 65/169 (38%), Gaps = 21/169 (12%)
Query: 52 PSTPWDTSGAPGPAGIS-PGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQE 110
P P +GAPG G+S P P P G Q G GP AR L
Sbjct: 904 PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSP-GAQG-PPGAPGPLGIAGITGARGLAGP 961
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLP--AGLHG 168
P +P G PGP+G +GE + G R P PGP Q LP AG G
Sbjct: 962 PG-------MPGPRGSPGPQG--VKGESGKPGANGLSGERGP-PGP---QGLPGLAGTAG 1008
Query: 169 RRKVGSAPDRHGLGA--GSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
P GL GS G +G++ G SP PG H G +G
Sbjct: 1009 EPGRDGNPGSDGLPGRDGSPGGKGDRGENG-SPGAPGAPGHPGPPGPVG 1056
Score = 38.5 bits (88), Expect = 0.005
Identities = 35/102 (34%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPGPGSRQPLPAGLHGRRKVGSAPDR 178
P G PGP G + R + G G A APGP P P G G + G +R
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDK--GETGER 1100
Query: 179 HGLG-AGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLP 219
G G G GN G SP P G++ GS G R P
Sbjct: 1101 GAAGIKGHRGFPGNPGAPG-SPGPAGQQGAIGSPGPAGPRGP 1141
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/126 (30%), Positives = 47/126 (37%), Gaps = 20/126 (15%)
Query: 114 DPSILRLPRVVGVPGP--------RGRRHRGEQQQQREQR-----GGGARAPGPGPGSRQ 160
DP I P G PGP G ++ Q + + GG A PGP
Sbjct: 122 DPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP 181
Query: 161 PLPAGLHGRRKVGSAPDRHGL-----GAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
P P G G +P G AG +G G +GPS P G+ SG R G
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPS-GPAGKDGESGRPGRPG 240
Query: 216 AR-LPG 220
R LPG
Sbjct: 241 ERGLPG 246
Score = 36.2 bits (82), Expect = 0.026
Identities = 51/189 (26%), Positives = 62/189 (32%), Gaps = 28/189 (14%)
Query: 48 TEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRR-ARR 106
T G P +P G GPAG SPG AP P G Q + P + +
Sbjct: 340 TAGFPGSP-GAKGEVGPAG-SPGS-NGAPGQRGEP-GPQGHAGAQGPPGPPGINGSPGGK 395
Query: 107 LLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGL 166
PA P L G PGP G + GGA PG +P P G
Sbjct: 396 GEMGPAGIPGAPGLMGARGPPGPAGANGAPGLR-------GGAGEPGKNGAKGEPGPRGE 448
Query: 167 HGRRKVGSAPDRHGLGA--------------GSAGARGNKAVVGPSPPP--PGRRLHSGS 210
G + P G G+AG RG GP+ P PG + +G
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGE 508
Query: 211 ESRLGARLP 219
G P
Sbjct: 509 RGAPGPAGP 517
Score = 35.0 bits (79), Expect = 0.059
Identities = 61/206 (29%), Positives = 69/206 (33%), Gaps = 48/206 (23%)
Query: 55 PWDTSGAPGPAGISPGVVRTAPSLADHPLGRQAR-RAGRAGPEVEEVKRRARRLLQEPAR 113
P GAPGPAG P P P G R G G + K E R
Sbjct: 505 PAGERGAPGPAG--PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGR 562
Query: 114 D----PSILR-LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGP-------------- 154
PS R P V+G PGP+G + +R GG PGP
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGER----GGPGGPGPQGPPGKNGETGPQG 618
Query: 155 -----GPGSRQ-----PLPAGLHGRRKVGSAPDRHGL--------GAGSAGARGNKAVVG 196
GPG + P P GL G G P +G AG+ GA G K G
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG 678
Query: 197 P--SPPPPGRRLHSGSESRLGARLPG 220
PPG L R GA PG
Sbjct: 679 APGERGPPG--LAGAPGLRGGAGPPG 702
Score = 33.5 bits (75), Expect = 0.17
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 34/135 (25%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P G+PGPAG + P+ P+G +GP
Sbjct: 1110 GFPGNP-GAPGSPGPAGQQGAIGSPGPAGPRGPVGP-------SGP-------------- 1147
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQP-------- 161
P +D + P +G PGPRG +RGE+ + G P PG+ P
Sbjct: 1148 -PGKDGTSGH-PGPIGPPGPRG--NRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAA 1203
Query: 162 LPAGLHGRRKVGSAP 176
AG+ G + G AP
Sbjct: 1204 AIAGIGGEKAGGFAP 1218
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 48.5 bits (114), Expect = 5e-06
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 32/181 (17%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL------------ 107
G GP GI PG+ P+G + G AG + K ++
Sbjct: 441 GPQGPMGI-PGIGSQGEQGIQGPIGPPGPQ-GPAGQGLPGSKGEVGQMGPTGPRGPVGIG 498
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLH 167
+Q P +P + LP GVPG G + + E GAR P PG QP P G
Sbjct: 499 VQGPKGEPGSIGLPGQPGVPGEDGAAGK-----KGEAGLPGARGPEGPPGKGQPGPKGDE 553
Query: 168 GRRKVGSAPDRHGLGAGSAGARGNKAVVGP-------SPPPPGRRLHSGSESRLGARLPG 220
G++ + GL G G +G ++GP P PPG + G G +PG
Sbjct: 554 GKKGSKGNQGQRGL-PGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRG-----GPGIPG 607
Query: 221 F 221
F
Sbjct: 608 F 608
Score = 38.1 bits (87), Expect = 0.007
Identities = 48/187 (25%), Positives = 66/187 (35%), Gaps = 44/187 (23%)
Query: 49 EGAPSTPWDTS--GAPGPAGISPGVVRTA----PSLADHPLGRQARRAGRAGPEVEEVKR 102
+G P P G PGP G+ GV T P + P R G GP+ + ++
Sbjct: 637 DGYPGVPGPRGLPGPPGPMGLR-GVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQK 695
Query: 103 RARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL 162
G+PGP G G Q + EQ G P G P
Sbjct: 696 ----------------------GLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPG 733
Query: 163 PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFI 222
G HG R G G +G+K +G P PG++ G + LG I
Sbjct: 734 QKGEHGER-------------GDVGKKGDKGEIG-EPGSPGKQGLQGPKGDLGLTKEEII 779
Query: 223 ALL-DLC 228
L+ ++C
Sbjct: 780 KLITEIC 786
Score = 36.6 bits (83), Expect = 0.020
Identities = 44/168 (26%), Positives = 58/168 (34%), Gaps = 42/168 (25%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G SPG AP + + + + GR G
Sbjct: 346 GPPGPYG-SPG----APGIGQQGIKGERGQEGRPGAPG---------------------- 378
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL-PAGLHG------RRKV 172
P VG PG G R +R G G P GS P P GL G + +
Sbjct: 379 -PIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDI 437
Query: 173 GSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPG 220
G + +G G++G + + GP PP G + G LPG
Sbjct: 438 GPVGPQGPMGIPGIGSQGEQGIQGPIGPP-------GPQGPAGQGLPG 478
Score = 34.7 bits (78), Expect = 0.077
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 101 KRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQ 160
K+ R++ + DP P G PG +G R ++ G R PG PG +
Sbjct: 233 KKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYK- 291
Query: 161 PLPAGLHGRR----KVGSAPDRHGLGA-GSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
G G R K G D+ G G G RG + + GP P PG + G++ G
Sbjct: 292 ----GDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGP-PGDPGPKGFQGNKGEPG 346
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 48.1 bits (113), Expect = 7e-06
Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHG 168
+ P R PS+ R G P RGRR E+R G+R G G + LP G G
Sbjct: 45 RRPRRHPSVNPRSRAAGSPRTRGRR--------TEERPSGSRLGDRGRG--RALPGGRLG 94
Query: 169 RRKVGSAPDR---HGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGA 216
R G AP+R G G G+A R A G P P G + +GS + L A
Sbjct: 95 GRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGPAG-TMAAGSITTLPA 144
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 46.6 bits (109), Expect = 2e-05
Identities = 59/188 (31%), Positives = 75/188 (39%), Gaps = 30/188 (15%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P G PGP PG + P AG GP V + +A+ +LQ
Sbjct: 502 GRPGLP-GADGLPGP----PGTMLMLPFRFGG-----GGDAGSKGPMVSAQESQAQAILQ 551
Query: 110 E-------PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL 162
+ PA + P VG PG G + GE Q G + P PGP +
Sbjct: 552 QARLALRGPAGPMGLTGRPGPVGPPGSGGLK--GEPGDVGPQGPRGVQGP-PGPAGKPGR 608
Query: 163 P--AGLHGRR----KVGSAPDRHGLG-AGSAGARGNKAVVGPS--PPPPGRRLHSGSESR 213
AG G R + G DR G AG G +G++ GPS P PPG G +
Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGE 668
Query: 214 LGAR-LPG 220
+G R LPG
Sbjct: 669 VGPRGLPG 676
Score = 39.7 bits (91), Expect = 0.002
Identities = 39/127 (30%), Positives = 45/127 (35%), Gaps = 31/127 (24%)
Query: 125 GVPGPRGRRHRGEQQQQREQRG----------GGARAPGPGPGSRQPL----PAGLHGRR 170
G PGPRG+R + +R RG G P PG R P P G G +
Sbjct: 904 GKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPK 963
Query: 171 KVGSAPDRHGLGA-----------GSAGARGNKAVVGPSPP-----PPGRRLHSGSESRL 214
P + GL G G G VVGP P P G R H G
Sbjct: 964 GPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPP 1023
Query: 215 GAR-LPG 220
G + LPG
Sbjct: 1024 GEQGLPG 1030
Score = 38.5 bits (88), Expect = 0.005
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 28/178 (15%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQEPARDPSI 117
G PGP G + P+ A P+G R G GP E+ + RD
Sbjct: 1078 GPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD--- 1134
Query: 118 LRLPRVVGVPGPRG----------RRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLH 167
L VG+PGP G + GE Q+ + G + P PGP Q P G
Sbjct: 1135 -GLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP-PGPTGPQG-PIGQP 1191
Query: 168 GRRKVGSAPDRHGLGA-----GSAGARGNKAVVGP-----SPPPPGRRLHSGSESRLG 215
G P G G G RG GP P PPG + +G ++G
Sbjct: 1192 GPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMG 1249
Score = 37.4 bits (85), Expect = 0.012
Identities = 55/186 (29%), Positives = 63/186 (33%), Gaps = 48/186 (25%)
Query: 55 PWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARD 114
P +G PGP G S G D P G R G GP Q P
Sbjct: 923 PRGITGKPGPKGNSGG---------DGPAGPPGER-GPNGP-------------QGPTGF 959
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGP----GSRQPL----PAGL 166
P P+ G PGP G+ QR + G + PGP G + P P G
Sbjct: 960 PG----PK--GPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGE 1013
Query: 167 HGRRKVGSAPDRHGLGAGSAGARGNKAVVGPS-----PPPPGRRLHSGSESRLGARLPGF 221
G P GL G AG G K GP+ PPG R G LPG
Sbjct: 1014 RGHPGPPGPPGEQGL-PGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRG-----LPGP 1067
Query: 222 IALLDL 227
+ L L
Sbjct: 1068 VGALGL 1073
Score = 37.4 bits (85), Expect = 0.012
Identities = 53/186 (28%), Positives = 65/186 (34%), Gaps = 41/186 (22%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGR-QARRAGRAGPEVEEVKRRARRL 107
E P+ P +G PGP G P L HP R + G+ G
Sbjct: 947 ERGPNGPQGPTGFPGPKG--PPGPPGKDGLPGHPGQRGETGFQGKTG------------- 991
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRR-HRGEQQQQREQ-------RGGGARAPGPGPGSR 159
P P ++ G GP G R H G EQ + G PGP
Sbjct: 992 ---PPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPG 1048
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP-----PGRRLHSGSESRL 214
+ P GL G P GL G GA G K GP PP PG R +G+ +
Sbjct: 1049 KDGPPGLRG------FPGDRGL-PGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPI 1101
Query: 215 GARLPG 220
G +PG
Sbjct: 1102 G--IPG 1105
Score = 37.4 bits (85), Expect = 0.012
Identities = 55/182 (30%), Positives = 72/182 (39%), Gaps = 36/182 (19%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARR 106
+G P D G PG G SPG P+ P G +R G AGPE + ++ A+
Sbjct: 1359 DGPPGDKGD-DGEPGQTG-SPG-----PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKG 1411
Query: 107 L--LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQP--L 162
L+ P + G PGP G R G EQ G+ P PG P L
Sbjct: 1412 EAGLEGPPGKTGPIGPQGAPGKPGPDGLR--GIPGPVGEQGLPGSPGPDGPPGPMGPPGL 1469
Query: 163 P-----AGLHGRR-------------KVGSAPDRHGLGA-GSAGARGNKAVVGPSPP--P 201
P +G G + + G DR G GS+G +G + + GPS P P
Sbjct: 1470 PGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGP 1529
Query: 202 PG 203
PG
Sbjct: 1530 PG 1531
Score = 32.3 bits (72), Expect = 0.38
Identities = 48/178 (26%), Positives = 55/178 (30%), Gaps = 39/178 (21%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PS A G Q G P K A +P
Sbjct: 1252 GPPGPRG---------PSGAPGADGPQGPPGGIGNPGAVGEKGEPGE-----AGEPG--- 1294
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG----SRQPLPAGLHGRRKVGSA 175
LP G PGP+G RGE+ + G P PG P P G G
Sbjct: 1295 LPGEGGPPGPKG--ERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGE 1352
Query: 176 PDRHGLGA-----------GSAGARGNKAVVGPSPP-----PPGRRLHSGSESRLGAR 217
P G G G+ G GPS P PPG G + GA+
Sbjct: 1353 PGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAK 1410
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 44.7 bits (104), Expect = 7e-05
Identities = 54/186 (29%), Positives = 69/186 (37%), Gaps = 26/186 (13%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQ 109
P P +GAPGP G P+G + G+ G + E K + +
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP-GKAGER 266
Query: 110 EPARDPSILRLPRVVGVPGPRGRR-HRGEQQQQREQRGGGARAPGPGPG---SRQPL-PA 164
P P G+PG +G R + G + E G + PG S P+ P
Sbjct: 267 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR 326
Query: 165 GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP-----------PGRRLHSGSESR 213
GL G R R G AG+AGARGN GP+ PP PG G
Sbjct: 327 GLPGER------GRTG-PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 379
Query: 214 LGARLP 219
GAR P
Sbjct: 380 TGARGP 385
Score = 40.4 bits (93), Expect = 0.001
Identities = 55/184 (29%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVV-----RTAPSLADHPLGRQARRAGRAGPEVEEVKRRA 104
G P D G PG AG +PG+V R P P G Q + R P
Sbjct: 675 GEGGKPGD-QGVPGEAG-APGLVGPRGERGFPGERGSP-GAQGLQGPRGLPGTPGTD--G 729
Query: 105 RRLLQEPARDPSILRLPRVVGVPGPRGRRH----RGEQQQQREQRGGGARAPGPGPGSRQ 160
+ PA P P + G+PG RG +G++ E+ GA G G
Sbjct: 730 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 789
Query: 161 PL----PAGLHGRRKVGSAPDRHGLGAGSAGAR---GNKAVVGPSPPPPGRRLHSGSESR 213
P+ PAG +G + P AGSAGAR G + GP P P G G++ +
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGP----AGSAGARGAPGERGETGP-PGPAGFAGPPGADGQ 844
Query: 214 LGAR 217
GA+
Sbjct: 845 PGAK 848
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/166 (30%), Positives = 59/166 (35%), Gaps = 18/166 (10%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQE-----PARD 114
GAPG G G T P P G + G GP AR E P
Sbjct: 777 GAPGKDG---GRGLTGPIGPPGPAGANGEK-GEVGPPGPAGSAGARGAPGERGETGPPGP 832
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL-PAGLHGRRKVG 173
P G PG +G + GE Q+ + G + P PG + P G G R
Sbjct: 833 AGFAGPPGADGQPGAKGEQ--GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 890
Query: 174 SAPDRHGL--GAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR 217
P G AG G G+ GP P PPG SG + GAR
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGP-PGPPG---PSGKDGPKGAR 932
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/178 (29%), Positives = 68/178 (38%), Gaps = 17/178 (9%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
GAP P G+PGPAG + + A P+G AG G + + R +
Sbjct: 1065 GAPGAP-GPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGP-AGARGIQGPQGPRGDKGEAG 1122
Query: 110 EPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLH 167
EP + G+PGP G G+Q G R P PGP P+G
Sbjct: 1123 EPGERGLKGHRGFTGLQGLPGPPGPS--GDQGASGPAGPSGPRGP-PGPVG----PSGKD 1175
Query: 168 GRR----KVGSAPDRHGLG-AGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPG 220
G +G R G G AG GN GP P PPG + + + LG R G
Sbjct: 1176 GANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP-PGPPGPGIDMSAFAGLGPREKG 1232
Score = 37.7 bits (86), Expect = 0.009
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 125 GVPGPRGRRHR-GEQQQQREQRGGGARAPGPGPG-SRQPLPAGLHGRRKVGSAPDRHGLG 182
G PGP G R GE+ + GAR PG + P P G G AP G
Sbjct: 318 GSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKG-E 376
Query: 183 AGSAGARGNKAVVGP--------SPPPPGRRLHSGSESRLGAR 217
AG GARG + GP SP P G + G++ GA+
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
Score = 37.4 bits (85), Expect = 0.012
Identities = 53/183 (28%), Positives = 63/183 (34%), Gaps = 63/183 (34%)
Query: 50 GAPSTPWDTSGAPGPAGIS--------PGVVRTA--PSLADHPLGRQARRAGRAGPEVEE 99
G P TP G+PGPAG S PG +A P +A P G GP
Sbjct: 393 GEPGTP----GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP--------GFPGPRGPP 440
Query: 100 VKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSR 159
+ A L + G PG G +GEQ + E PGP
Sbjct: 441 GPQGATGPLGPKGQ----------TGEPGIAG--FKGEQGPKGE--------PGPAGPQG 480
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP-----PGRRLHSGSESRL 214
P PAG G+R GARG VGP PP PG R G +
Sbjct: 481 APGPAGEEGKR----------------GARGEPGGVGPIGPPGERGAPGNRGFPGQDGLA 524
Query: 215 GAR 217
G +
Sbjct: 525 GPK 527
Score = 37.0 bits (84), Expect = 0.015
Identities = 55/187 (29%), Positives = 66/187 (35%), Gaps = 39/187 (20%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P + G PG G++ P P G GR GP + R
Sbjct: 546 GDPGRPGEP-GLPGARGLTGRPGDAGPQGKVGPSGAPGED-GRPGPPGPQGARGQ----- 598
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGR 169
P V+G PGP+G GE + E+ GA PG R GL G+
Sbjct: 599 -----------PGVMGFPGPKGAN--GEPGKAGEKGLPGA------PGLR-----GLPGK 634
Query: 170 RKVGSAPDRHGLGAGSAGARGNKAVVGPS-----PPPPGRRLHSGSESRLGARLPGFIAL 224
A G AG AG RG + GPS P PPG G G +PG
Sbjct: 635 DGETGAAGPPG-PAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG--VPGEAGA 691
Query: 225 LDLCDPR 231
L PR
Sbjct: 692 PGLVGPR 698
Score = 37.0 bits (84), Expect = 0.015
Identities = 53/207 (25%), Positives = 66/207 (31%), Gaps = 61/207 (29%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQA--RRAGRAGPEVEEVKRRARRL 107
GAP P SGAPGP G + A P G AGR GP
Sbjct: 861 GAPG-PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP------------ 907
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRH----RGEQQQQREQRGGGARAPGPGPGSR---- 159
P P G PGP G+ RG+ G + P PG +
Sbjct: 908 -------PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPG 960
Query: 160 ---------QPLPAGLHGRRKVGSAPDRHGLGA--------------GSAGARGNKAVVG 196
P P GL G+R + P + G G+ GA G++ G
Sbjct: 961 DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 1020
Query: 197 PSPPP--------PGRRLHSGSESRLG 215
P PP PGR G++ G
Sbjct: 1021 PVGPPGLTGPAGEPGREGSPGADGPPG 1047
Score = 33.9 bits (76), Expect = 0.13
Identities = 57/193 (29%), Positives = 67/193 (34%), Gaps = 53/193 (27%)
Query: 60 GAPGPAGIS-----PGVVRTAPSLADHPLGRQARRAGRAGPEVE-----EVKRRARRLLQ 109
GAPGP+G PG D + +A G GP E E + LQ
Sbjct: 657 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ 716
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGP-GPGSRQPLP----- 163
P LP G GP+G G A PG GP Q +P
Sbjct: 717 GPRG------LPGTPGTDGPKGA-------------SGPAGPPGAQGPPGLQGMPGERGA 757
Query: 164 AGLHG----RRKVGS-----APDRHG-------LGA-GSAGARGNKAVVGPSPPPPGRRL 206
AG+ G R VG AP + G +G G AGA G K VGP P P G
Sbjct: 758 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-PGPAGSAG 816
Query: 207 HSGSESRLGARLP 219
G+ G P
Sbjct: 817 ARGAPGERGETGP 829
Score = 29.6 bits (65), Expect = 2.5
Identities = 37/130 (28%), Positives = 47/130 (36%), Gaps = 25/130 (19%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G S + P+ P G G GP ++
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGPP----GPVGPSGKDGANG---------------- 1179
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAP--GPGPGSRQPLPAGLHGRRKVGSAPD 177
+P +G PGPRGR GE G P PGPG AGL G R+ G P
Sbjct: 1180 IPGPIGPPGPRGR--SGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGL-GPREKGPDPL 1236
Query: 178 RHGLGAGSAG 187
++ +AG
Sbjct: 1237 QYMRADQAAG 1246
Score = 29.3 bits (64), Expect = 3.2
Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQ-----------------PLPAG 165
+VG GP G + +Q R RG PGP R P P G
Sbjct: 115 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPG 174
Query: 166 LHGR--RKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP 201
L G ++ D GA +G +GP PP
Sbjct: 175 LGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 212
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 44.7 bits (104), Expect = 7e-05
Identities = 54/186 (29%), Positives = 69/186 (37%), Gaps = 26/186 (13%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQ 109
P P +GAPGP G P+G + G+ G + E K + +
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP-GKAGER 197
Query: 110 EPARDPSILRLPRVVGVPGPRGRR-HRGEQQQQREQRGGGARAPGPGPG---SRQPL-PA 164
P P G+PG +G R + G + E G + PG S P+ P
Sbjct: 198 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR 257
Query: 165 GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP-----------PGRRLHSGSESR 213
GL G R R G AG+AGARGN GP+ PP PG G
Sbjct: 258 GLPGER------GRTG-PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 310
Query: 214 LGARLP 219
GAR P
Sbjct: 311 TGARGP 316
Score = 40.4 bits (93), Expect = 0.001
Identities = 55/184 (29%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVV-----RTAPSLADHPLGRQARRAGRAGPEVEEVKRRA 104
G P D G PG AG +PG+V R P P G Q + R P
Sbjct: 606 GEGGKPGD-QGVPGEAG-APGLVGPRGERGFPGERGSP-GAQGLQGPRGLPGTPGTD--G 660
Query: 105 RRLLQEPARDPSILRLPRVVGVPGPRGRRH----RGEQQQQREQRGGGARAPGPGPGSRQ 160
+ PA P P + G+PG RG +G++ E+ GA G G
Sbjct: 661 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 720
Query: 161 PL----PAGLHGRRKVGSAPDRHGLGAGSAGAR---GNKAVVGPSPPPPGRRLHSGSESR 213
P+ PAG +G + P AGSAGAR G + GP P P G G++ +
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGP----AGSAGARGAPGERGETGP-PGPAGFAGPPGADGQ 775
Query: 214 LGAR 217
GA+
Sbjct: 776 PGAK 779
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/166 (30%), Positives = 59/166 (35%), Gaps = 18/166 (10%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQE-----PARD 114
GAPG G G T P P G + G GP AR E P
Sbjct: 708 GAPGKDG---GRGLTGPIGPPGPAGANGEK-GEVGPPGPAGSAGARGAPGERGETGPPGP 763
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL-PAGLHGRRKVG 173
P G PG +G + GE Q+ + G + P PG + P G G R
Sbjct: 764 AGFAGPPGADGQPGAKGEQ--GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 821
Query: 174 SAPDRHGL--GAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR 217
P G AG G G+ GP P PPG SG + GAR
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGP-PGPPG---PSGKDGPKGAR 863
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/178 (29%), Positives = 68/178 (38%), Gaps = 17/178 (9%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
GAP P G+PGPAG + + A P+G AG G + + R +
Sbjct: 996 GAPGAP-GPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGP-AGARGIQGPQGPRGDKGEAG 1053
Query: 110 EPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLH 167
EP + G+PGP G G+Q G R P PGP P+G
Sbjct: 1054 EPGERGLKGHRGFTGLQGLPGPPGPS--GDQGASGPAGPSGPRGP-PGPVG----PSGKD 1106
Query: 168 GRR----KVGSAPDRHGLG-AGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPG 220
G +G R G G AG GN GP P PPG + + + LG R G
Sbjct: 1107 GANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP-PGPPGPGIDMSAFAGLGPREKG 1163
Score = 37.7 bits (86), Expect = 0.009
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 125 GVPGPRGRRHR-GEQQQQREQRGGGARAPGPGPG-SRQPLPAGLHGRRKVGSAPDRHGLG 182
G PGP G R GE+ + GAR PG + P P G G AP G
Sbjct: 249 GSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKG-E 307
Query: 183 AGSAGARGNKAVVGP--------SPPPPGRRLHSGSESRLGAR 217
AG GARG + GP SP P G + G++ GA+
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
Score = 37.4 bits (85), Expect = 0.012
Identities = 53/183 (28%), Positives = 63/183 (34%), Gaps = 63/183 (34%)
Query: 50 GAPSTPWDTSGAPGPAGIS--------PGVVRTA--PSLADHPLGRQARRAGRAGPEVEE 99
G P TP G+PGPAG S PG +A P +A P G GP
Sbjct: 324 GEPGTP----GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP--------GFPGPRGPP 371
Query: 100 VKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSR 159
+ A L + G PG G +GEQ + E PGP
Sbjct: 372 GPQGATGPLGPKGQ----------TGEPGIAG--FKGEQGPKGE--------PGPAGPQG 411
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP-----PGRRLHSGSESRL 214
P PAG G+R GARG VGP PP PG R G +
Sbjct: 412 APGPAGEEGKR----------------GARGEPGGVGPIGPPGERGAPGNRGFPGQDGLA 455
Query: 215 GAR 217
G +
Sbjct: 456 GPK 458
Score = 37.0 bits (84), Expect = 0.015
Identities = 55/187 (29%), Positives = 66/187 (35%), Gaps = 39/187 (20%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P + G PG G++ P P G GR GP + R
Sbjct: 477 GDPGRPGEP-GLPGARGLTGRPGDAGPQGKVGPSGAPGED-GRPGPPGPQGARGQ----- 529
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGR 169
P V+G PGP+G GE + E+ GA PG R GL G+
Sbjct: 530 -----------PGVMGFPGPKGAN--GEPGKAGEKGLPGA------PGLR-----GLPGK 565
Query: 170 RKVGSAPDRHGLGAGSAGARGNKAVVGPS-----PPPPGRRLHSGSESRLGARLPGFIAL 224
A G AG AG RG + GPS P PPG G G +PG
Sbjct: 566 DGETGAAGPPG-PAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG--VPGEAGA 622
Query: 225 LDLCDPR 231
L PR
Sbjct: 623 PGLVGPR 629
Score = 37.0 bits (84), Expect = 0.015
Identities = 53/207 (25%), Positives = 66/207 (31%), Gaps = 61/207 (29%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQA--RRAGRAGPEVEEVKRRARRL 107
GAP P SGAPGP G + A P G AGR GP
Sbjct: 792 GAPG-PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP------------ 838
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRH----RGEQQQQREQRGGGARAPGPGPGSR---- 159
P P G PGP G+ RG+ G + P PG +
Sbjct: 839 -------PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPG 891
Query: 160 ---------QPLPAGLHGRRKVGSAPDRHGLGA--------------GSAGARGNKAVVG 196
P P GL G+R + P + G G+ GA G++ G
Sbjct: 892 DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 951
Query: 197 PSPPP--------PGRRLHSGSESRLG 215
P PP PGR G++ G
Sbjct: 952 PVGPPGLTGPAGEPGREGSPGADGPPG 978
Score = 33.9 bits (76), Expect = 0.13
Identities = 57/193 (29%), Positives = 67/193 (34%), Gaps = 53/193 (27%)
Query: 60 GAPGPAGIS-----PGVVRTAPSLADHPLGRQARRAGRAGPEVE-----EVKRRARRLLQ 109
GAPGP+G PG D + +A G GP E E + LQ
Sbjct: 588 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ 647
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGP-GPGSRQPLP----- 163
P LP G GP+G G A PG GP Q +P
Sbjct: 648 GPRG------LPGTPGTDGPKGA-------------SGPAGPPGAQGPPGLQGMPGERGA 688
Query: 164 AGLHG----RRKVGS-----APDRHG-------LGA-GSAGARGNKAVVGPSPPPPGRRL 206
AG+ G R VG AP + G +G G AGA G K VGP P P G
Sbjct: 689 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-PGPAGSAG 747
Query: 207 HSGSESRLGARLP 219
G+ G P
Sbjct: 748 ARGAPGERGETGP 760
Score = 29.6 bits (65), Expect = 2.5
Identities = 37/130 (28%), Positives = 47/130 (36%), Gaps = 25/130 (19%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G S + P+ P G G GP ++
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGPP----GPVGPSGKDGANG---------------- 1110
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAP--GPGPGSRQPLPAGLHGRRKVGSAPD 177
+P +G PGPRGR GE G P PGPG AGL G R+ G P
Sbjct: 1111 IPGPIGPPGPRGR--SGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGL-GPREKGPDPL 1167
Query: 178 RHGLGAGSAG 187
++ +AG
Sbjct: 1168 QYMRADQAAG 1177
Score = 29.3 bits (64), Expect = 3.2
Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQ-----------------PLPAG 165
+VG GP G + +Q R RG PGP R P P G
Sbjct: 46 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPG 105
Query: 166 LHGR--RKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP 201
L G ++ D GA +G +GP PP
Sbjct: 106 LGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 143
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.7 bits (104), Expect = 7e-05
Identities = 55/180 (30%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 49 EGAPSTPWDTSGAPGPAGIS--PGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARR 106
+G P G PGP+G++ PG P + P GR A G AG E +R +
Sbjct: 2014 QGPPGLALGERGPPGPSGLAGEPG----KPGIPGLP-GR-AGGVGEAGRPGERGERGEKG 2067
Query: 107 LLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGL 166
E RD LP G PGP G + ++ PGPG Q P GL
Sbjct: 2068 ERGEQGRD-GPPGLPGTPGPPGPPGPKVSVDE-------------PGPGLSGEQG-PPGL 2112
Query: 167 HGRR-KVGSAPDRHGLG-AGSAGARGNKAVVGP-----SPPPPGRRLHSGSESRLGARLP 219
G + + GS D+ G G G +G++ GP +P PG R +G E + G + P
Sbjct: 2113 KGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGP 2172
Score = 42.0 bits (97), Expect = 5e-04
Identities = 51/168 (30%), Positives = 64/168 (38%), Gaps = 34/168 (20%)
Query: 50 GAP--STPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
G+P S P G PGP G +V T P AR G G +E R
Sbjct: 1685 GSPGSSGPKGDRGEPGPPGPPGRLVDTGPG---------AREKGEPGDRGQEGPRG---- 1731
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRH-RGEQQQQREQRGGGARAPGPGPGSRQPL---- 162
P DP + P G+ G RG +G+ + G R P PG R L
Sbjct: 1732 ---PKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGP-PGLDGRSGLDGKP 1787
Query: 163 ----PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP--PGR 204
P+G +G P R GL G RG + + GPS PP PG+
Sbjct: 1788 GAAGPSGPNGAAGKAGDPGRDGL----PGLRGEQGLPGPSGPPGLPGK 1831
Score = 42.0 bits (97), Expect = 5e-04
Identities = 60/191 (31%), Positives = 78/191 (40%), Gaps = 42/191 (21%)
Query: 50 GAPSTPWDTSGAPGPAGIS-----PGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKR 102
G P +P G PGP G+ PG+ AP + P G+ R G+ GP E
Sbjct: 2374 GVPGSP----GPPGPPGVKGDLGLPGLPG-APGVVGFP-GQTGPRGEMGQPGPSGE---- 2423
Query: 103 RARRLLQEPARDPSILRLPRVVGVPGPRGR-RHRGEQQQQREQRGGGARAPGPG-----P 156
R L P R+ +P +G PGP G G + ++ G PGP P
Sbjct: 2424 --RGLAGPPGREG----IPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEP 2477
Query: 157 GSR-------QPLPAGLHGRRKVGSAPDRHGLG-AGSAGARGNKAVVGPSPPPPGRRLHS 208
G R Q P GL G GS +R G GSAG +G+K PPG R
Sbjct: 2478 GIRGEDGRPGQEGPRGLTG--PPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPR--- 2532
Query: 209 GSESRLGARLP 219
G++ +G R P
Sbjct: 2533 GAKGDMGERGP 2543
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/177 (27%), Positives = 66/177 (37%), Gaps = 48/177 (27%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRL 107
G P P SGAPG G+ +G + R G+ GP+ ++ ++ R
Sbjct: 2662 GEPGVPGQ-SGAPGKEGL---------------IGPKGDRGFDGQPGPKGDQGEKGERGT 2705
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL-PAGL 166
P + G PGP G G A PGP PGS P P GL
Sbjct: 2706 -------------PGIGGFPGPSGN-------------DGSAGPPGP-PGSVGPRGPEGL 2738
Query: 167 HGRRKVGSAPDRHGLGA-GSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFI 222
G++ P +GA G GA G + G P P G R G + + GF+
Sbjct: 2739 QGQKGERGPPGERVVGAPGVPGAPGERGEQG-RPGPAGPRGEKGEAALTEDDIRGFV 2794
Score = 38.5 bits (88), Expect = 0.005
Identities = 47/171 (27%), Positives = 64/171 (37%), Gaps = 24/171 (14%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTA-PSLADHPLGR-QARRAGRAGPEVEEVKRRARRLLQ 109
P+ P +G G G PG+V P P R GRAGP +
Sbjct: 1561 PAGPRGATGVQGERG-PPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGD----------- 1608
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGR 169
+ P P G PGP G R R + ++ G PG + L R
Sbjct: 1609 --SGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVR 1666
Query: 170 RKVGSAPDRHGLG-------AGSAGARGNKAVVGPSPPPPGRRLHSGSESR 213
VG D+ G GS+G +G++ GP P PPGR + +G +R
Sbjct: 1667 GPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGP-PGPPGRLVDTGPGAR 1716
Score = 37.7 bits (86), Expect = 0.009
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRT-APSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
E P P + APG G+ PG+ + P P G++ + +
Sbjct: 1407 ERGPPGPGEGGIAPGEPGL-PGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPG 1465
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARA-PGPG--PGSRQPL-P 163
Q P P + G PGP G GE+ ++ G+R PG PG++ P P
Sbjct: 1466 EQGPRGPPGAIGPKGDRGFPGPLGEA--GEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Query: 164 AGLHGRRKVGSAPDRHG----LGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLP 219
G GR+ P R G +G AG +G K VGP+ P G G G LP
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPA-GPRGATGVQGERGPPGLVLP 1582
Query: 220 G 220
G
Sbjct: 1583 G 1583
Score = 37.0 bits (84), Expect = 0.015
Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 50 GAPSTPWDTS-----GAPGPAGISPGVVRTAPSLADH-PLGRQARRA--GRAGPEVEEVK 101
G P P + G PGP G PGV A D P G R G+ G
Sbjct: 1737 GLPGAPGERGIEGFRGPPGPQG-DPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGP 1795
Query: 102 RRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQP 161
A +P RD + L G+PGP G G + E G PG P
Sbjct: 1796 NGAAGKAGDPGRD-GLPGLRGEQGLPGPSGPP--GLPGKPGEDGKPGLNGKNGEPGD--P 1850
Query: 162 LPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP 201
G G + A R G G G RG ++GP PP
Sbjct: 1851 GEDGRKGEKGDSGASGREGRD-GPKGERGAPGILGPQGPP 1889
Score = 36.6 bits (83), Expect = 0.020
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 44/177 (24%)
Query: 50 GAPSTPWDTS--GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
G+P P G PGP G V P G + G AG V E + R
Sbjct: 2278 GSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAK----GEKGAPGGLAGDLVGEPGAKGDR- 2332
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPG---------- 155
G+PGPRG + + + G G APGP
Sbjct: 2333 -----------------GLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGV 2375
Query: 156 PGS-RQPLPAGLHGRRKVGSAPDRHGLGA--GSAGARGNKAVVGPS-----PPPPGR 204
PGS P P G+ G + P G+ G G RG GPS PPGR
Sbjct: 2376 PGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGR 2432
Score = 34.7 bits (78), Expect = 0.077
Identities = 34/117 (29%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P DP LP G PGP+G + +R G R PG P G G +
Sbjct: 1270 PPGDPG---LPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTP-GAPGLK 1325
Query: 171 KVGSAPDRHGLGAGSAGARGNK--------AVVGPSPPPPGRRLHSGSESRLGARLP 219
P G G G RG K + G P PGR+ G G R P
Sbjct: 1326 GSPGLPGPRG-DPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGP 1381
Score = 30.4 bits (67), Expect = 1.4
Identities = 49/171 (28%), Positives = 61/171 (35%), Gaps = 32/171 (18%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
EG P P G PG G PG D +G R R P + R
Sbjct: 2433 EGIPG-PLGPPGPPGSVG-PPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPG--- 2487
Query: 109 QEPARDPSILRLPRVVGVPGPRGRR-HRGEQQQQ--REQRGGGARAPGPGPGSR------ 159
QE R + G PG RG R +G+ + +G A GP PG R
Sbjct: 2488 QEGPRG--------LTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGP-PGPRGAKGDM 2538
Query: 160 -QPLPAGLHG----RRKVGSAPDRHGLGA----GSAGARGNKAVVGPSPPP 201
+ P GL G R G D+ G GSAG G + ++GP P
Sbjct: 2539 GERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQP 2589
Score = 29.6 bits (65), Expect = 2.5
Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 20/156 (12%)
Query: 50 GAPST--PWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
GAP P G PGP G PG P G + G G + E+ R L
Sbjct: 1878 GAPGILGPQGPPGLPGPVG-PPGQGFPGVPGGTGPKGDR----GETGSKGEQGLPGERGL 1932
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLH 167
EP P++ RL G+ R + + G+ P P R+ P G
Sbjct: 1933 RGEPGSVPNVDRLLETAGIKASALR-----EIVETWDESSGSFLPVP---ERRRGPKGDS 1984
Query: 168 GRRKVGSAPDRHG-LG-AGSAGARGNKAVVGPSPPP 201
G + P + G +G G G +G++ GP PP
Sbjct: 1985 GEQ---GPPGKEGPIGFPGERGLKGDRGDPGPQGPP 2017
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G+P +P +T G PG G PG A G + + PE + L
Sbjct: 510 KGSPGSPGNT-GLPGFPGF-PG--------AQGDPGLKGEKGETLQPEGQVGVPGDPGLR 559
Query: 109 QEPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPG-----PGSR 159
+P R I P V G+PGP+G ++ + G G +PGP PG
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYG 619
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GL G + V AP G AG RG +V P P PPG
Sbjct: 620 PQGEPGLQGTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPG 659
Score = 37.0 bits (84), Expect = 0.015
Identities = 49/174 (28%), Positives = 60/174 (34%), Gaps = 32/174 (18%)
Query: 49 EGAPSTPWDTS--GAPGPAG----------ISPGVVRTAPSLADHP-------LGRQARR 89
EGAP +P G PGP G + P +R P L P + R
Sbjct: 1100 EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGR 1159
Query: 90 AGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGA 149
G GP E+ + R P +P G PG G R+ G A
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL-------PGRKGAMGDA 1212
Query: 150 RAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GP P P GL G G +R G G+RG+ GP P PPG
Sbjct: 1213 GPRGPTGIEGFPGPPGLPGAIIPGQTGNR-----GPPGSRGSPGAPGP-PGPPG 1260
Score = 34.7 bits (78), Expect = 0.077
Identities = 53/186 (28%), Positives = 67/186 (36%), Gaps = 36/186 (19%)
Query: 49 EGAPSTPW-DTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
+G P P D SG PG G SPG+ + PLG++ G G +
Sbjct: 838 KGDPGIPGLDRSGFPGETG-SPGIPGHQGEMG--PLGQRGY-PGNPG------------I 881
Query: 108 LQEPARDPSI--LRLPRVVGVPGPRGRRHRGEQQQQ------REQRG--------GGARA 151
L P D I + P +G PGP G Q+ + QRG G
Sbjct: 882 LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGN 941
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA--GSAGARGNKAVVGPSPPPPGRRLHSG 209
PGP S G G + P G G G +G K + GP+ PPG R G
Sbjct: 942 PGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPA-GPPGPRGDLG 1000
Query: 210 SESRLG 215
S G
Sbjct: 1001 STGNPG 1006
Score = 33.9 bits (76), Expect = 0.13
Identities = 46/174 (26%), Positives = 59/174 (33%), Gaps = 31/174 (17%)
Query: 48 TEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGR-QARRAGRAGPEVEEVKRRARR 106
+ G+P P G PGP G ++ HP + AG GP
Sbjct: 1246 SRGSPGAP----GPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGP----------- 1290
Query: 107 LLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPGPGPGSRQP 161
P L P G+PGPRG + ++G G PGP P
Sbjct: 1291 --------PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 162 LPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
G G K+ S P G G+ G G + GP P PPG G + G
Sbjct: 1343 GVRGDPGTLKIISLPGSPG-PPGTPGEPGMQGEPGP-PGPPGNLGPCGPRGKPG 1394
Score = 32.3 bits (72), Expect = 0.38
Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 53/172 (30%)
Query: 50 GAPSTPWDTS-----GAPGPAGIS-----PGVVRTAPSLADHP--LGRQARRAGRAGPEV 97
G P TP +T G PG +G PG+ P +P G + + P
Sbjct: 106 GLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGL----PGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 98 EEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-- 155
EE + + DP + P G+PGP G G PGP
Sbjct: 162 EE------DIELDAKGDPGLPGAPGPQGLPGPPGFP-------------GPVGPPGPPGF 202
Query: 156 ---PGSRQPL-PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
PG+ P P G G R +G G RG K + GP P PPG
Sbjct: 203 FGFPGAMGPRGPKGHMGERVIGHK-----------GERGVKGLTGP-PGPPG 242
Score = 30.8 bits (68), Expect = 1.1
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 31/167 (18%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG+ + G AGPE P
Sbjct: 1065 GPPGPTG-DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGA----------------PGSPG 1107
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG-SRQPLPAGLHGRRKVGSAPDR 178
P + G PGP G G + + G R P PG P P G+ G + P
Sbjct: 1108 SPGLPGKPGPHG--DLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-- 1163
Query: 179 HGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR-LPGFIAL 224
G G K G PPG R + G++ G R PGF L
Sbjct: 1164 --------GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL 1202
Score = 27.7 bits (60), Expect = 9.4
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P P P +G GP+G H GE+ + G GP PG + L G
Sbjct: 196 PPGPPGFFGFPGAMGPRGPKG--HMGERVIGHKGERGVKGLTGP-PGPPGTVIVTLTG-- 250
Query: 171 KVGSAPDRHGLGAGSAGARGNKAVVG-PSPPPP 202
PD G +G+K +G P PP P
Sbjct: 251 -----PDNR---TDLKGEKGDKGAMGEPGPPGP 275
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G+P +P +T G PG G PG A G + + PE + L
Sbjct: 510 KGSPGSPGNT-GLPGFPGF-PG--------AQGDPGLKGEKGETLQPEGQVGVPGDPGLR 559
Query: 109 QEPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPG-----PGSR 159
+P R I P V G+PGP+G ++ + G G +PGP PG
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYG 619
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GL G + V AP G AG RG +V P P PPG
Sbjct: 620 PQGEPGLQGTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPG 659
Score = 37.0 bits (84), Expect = 0.015
Identities = 49/174 (28%), Positives = 60/174 (34%), Gaps = 32/174 (18%)
Query: 49 EGAPSTPWDTS--GAPGPAG----------ISPGVVRTAPSLADHP-------LGRQARR 89
EGAP +P G PGP G + P +R P L P + R
Sbjct: 1100 EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGR 1159
Query: 90 AGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGA 149
G GP E+ + R P +P G PG G R+ G A
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL-------PGRKGAMGDA 1212
Query: 150 RAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GP P P GL G G +R G G+RG+ GP P PPG
Sbjct: 1213 GPRGPTGIEGFPGPPGLPGAIIPGQTGNR-----GPPGSRGSPGAPGP-PGPPG 1260
Score = 34.7 bits (78), Expect = 0.077
Identities = 53/186 (28%), Positives = 67/186 (36%), Gaps = 36/186 (19%)
Query: 49 EGAPSTPW-DTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
+G P P D SG PG G SPG+ + PLG++ G G +
Sbjct: 838 KGDPGIPGLDRSGFPGETG-SPGIPGHQGEMG--PLGQRGY-PGNPG------------I 881
Query: 108 LQEPARDPSI--LRLPRVVGVPGPRGRRHRGEQQQQ------REQRG--------GGARA 151
L P D I + P +G PGP G Q+ + QRG G
Sbjct: 882 LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGN 941
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA--GSAGARGNKAVVGPSPPPPGRRLHSG 209
PGP S G G + P G G G +G K + GP+ PPG R G
Sbjct: 942 PGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPA-GPPGPRGDLG 1000
Query: 210 SESRLG 215
S G
Sbjct: 1001 STGNPG 1006
Score = 33.9 bits (76), Expect = 0.13
Identities = 46/174 (26%), Positives = 59/174 (33%), Gaps = 31/174 (17%)
Query: 48 TEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGR-QARRAGRAGPEVEEVKRRARR 106
+ G+P P G PGP G ++ HP + AG GP
Sbjct: 1246 SRGSPGAP----GPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGP----------- 1290
Query: 107 LLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPGPGPGSRQP 161
P L P G+PGPRG + ++G G PGP P
Sbjct: 1291 --------PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 162 LPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
G G K+ S P G G+ G G + GP P PPG G + G
Sbjct: 1343 GVRGDPGTLKIISLPGSPG-PPGTPGEPGMQGEPGP-PGPPGNLGPCGPRGKPG 1394
Score = 32.3 bits (72), Expect = 0.38
Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 53/172 (30%)
Query: 50 GAPSTPWDTS-----GAPGPAGIS-----PGVVRTAPSLADHP--LGRQARRAGRAGPEV 97
G P TP +T G PG +G PG+ P +P G + + P
Sbjct: 106 GLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGL----PGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 98 EEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-- 155
EE + + DP + P G+PGP G G PGP
Sbjct: 162 EE------DIELDAKGDPGLPGAPGPQGLPGPPGFP-------------GPVGPPGPPGF 202
Query: 156 ---PGSRQPL-PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
PG+ P P G G R +G G RG K + GP P PPG
Sbjct: 203 FGFPGAMGPRGPKGHMGERVIGHK-----------GERGVKGLTGP-PGPPG 242
Score = 30.8 bits (68), Expect = 1.1
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 31/167 (18%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG+ + G AGPE P
Sbjct: 1065 GPPGPTG-DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGA----------------PGSPG 1107
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG-SRQPLPAGLHGRRKVGSAPDR 178
P + G PGP G G + + G R P PG P P G+ G + P
Sbjct: 1108 SPGLPGKPGPHG--DLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-- 1163
Query: 179 HGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR-LPGFIAL 224
G G K G PPG R + G++ G R PGF L
Sbjct: 1164 --------GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL 1202
Score = 27.7 bits (60), Expect = 9.4
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P P P +G GP+G H GE+ + G GP PG + L G
Sbjct: 196 PPGPPGFFGFPGAMGPRGPKG--HMGERVIGHKGERGVKGLTGP-PGPPGTVIVTLTG-- 250
Query: 171 KVGSAPDRHGLGAGSAGARGNKAVVG-PSPPPP 202
PD G +G+K +G P PP P
Sbjct: 251 -----PDNR---TDLKGEKGDKGAMGEPGPPGP 275
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G+P +P +T G PG G PG A G + + PE + L
Sbjct: 510 KGSPGSPGNT-GLPGFPGF-PG--------AQGDPGLKGEKGETLQPEGQVGVPGDPGLR 559
Query: 109 QEPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPG-----PGSR 159
+P R I P V G+PGP+G ++ + G G +PGP PG
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYG 619
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GL G + V AP G AG RG +V P P PPG
Sbjct: 620 PQGEPGLQGTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPG 659
Score = 37.0 bits (84), Expect = 0.015
Identities = 49/174 (28%), Positives = 60/174 (34%), Gaps = 32/174 (18%)
Query: 49 EGAPSTPWDTS--GAPGPAG----------ISPGVVRTAPSLADHP-------LGRQARR 89
EGAP +P G PGP G + P +R P L P + R
Sbjct: 1100 EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGR 1159
Query: 90 AGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGA 149
G GP E+ + R P +P G PG G R+ G A
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL-------PGRKGAMGDA 1212
Query: 150 RAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GP P P GL G G +R G G+RG+ GP P PPG
Sbjct: 1213 GPRGPTGIEGFPGPPGLPGAIIPGQTGNR-----GPPGSRGSPGAPGP-PGPPG 1260
Score = 34.7 bits (78), Expect = 0.077
Identities = 53/186 (28%), Positives = 67/186 (36%), Gaps = 36/186 (19%)
Query: 49 EGAPSTPW-DTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
+G P P D SG PG G SPG+ + PLG++ G G +
Sbjct: 838 KGDPGIPGLDRSGFPGETG-SPGIPGHQGEMG--PLGQRGY-PGNPG------------I 881
Query: 108 LQEPARDPSI--LRLPRVVGVPGPRGRRHRGEQQQQ------REQRG--------GGARA 151
L P D I + P +G PGP G Q+ + QRG G
Sbjct: 882 LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGN 941
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA--GSAGARGNKAVVGPSPPPPGRRLHSG 209
PGP S G G + P G G G +G K + GP+ PPG R G
Sbjct: 942 PGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPA-GPPGPRGDLG 1000
Query: 210 SESRLG 215
S G
Sbjct: 1001 STGNPG 1006
Score = 33.9 bits (76), Expect = 0.13
Identities = 46/174 (26%), Positives = 59/174 (33%), Gaps = 31/174 (17%)
Query: 48 TEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGR-QARRAGRAGPEVEEVKRRARR 106
+ G+P P G PGP G ++ HP + AG GP
Sbjct: 1246 SRGSPGAP----GPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGP----------- 1290
Query: 107 LLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPGPGPGSRQP 161
P L P G+PGPRG + ++G G PGP P
Sbjct: 1291 --------PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 162 LPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
G G K+ S P G G+ G G + GP P PPG G + G
Sbjct: 1343 GVRGDPGTLKIISLPGSPG-PPGTPGEPGMQGEPGP-PGPPGNLGPCGPRGKPG 1394
Score = 32.3 bits (72), Expect = 0.38
Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 53/172 (30%)
Query: 50 GAPSTPWDTS-----GAPGPAGIS-----PGVVRTAPSLADHP--LGRQARRAGRAGPEV 97
G P TP +T G PG +G PG+ P +P G + + P
Sbjct: 106 GLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGL----PGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 98 EEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-- 155
EE + + DP + P G+PGP G G PGP
Sbjct: 162 EE------DIELDAKGDPGLPGAPGPQGLPGPPGFP-------------GPVGPPGPPGF 202
Query: 156 ---PGSRQPL-PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
PG+ P P G G R +G G RG K + GP P PPG
Sbjct: 203 FGFPGAMGPRGPKGHMGERVIGHK-----------GERGVKGLTGP-PGPPG 242
Score = 30.8 bits (68), Expect = 1.1
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 31/167 (18%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG+ + G AGPE P
Sbjct: 1065 GPPGPTG-DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGA----------------PGSPG 1107
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG-SRQPLPAGLHGRRKVGSAPDR 178
P + G PGP G G + + G R P PG P P G+ G + P
Sbjct: 1108 SPGLPGKPGPHG--DLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-- 1163
Query: 179 HGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR-LPGFIAL 224
G G K G PPG R + G++ G R PGF L
Sbjct: 1164 --------GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL 1202
Score = 27.7 bits (60), Expect = 9.4
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P P P +G GP+G H GE+ + G GP PG + L G
Sbjct: 196 PPGPPGFFGFPGAMGPRGPKG--HMGERVIGHKGERGVKGLTGP-PGPPGTVIVTLTG-- 250
Query: 171 KVGSAPDRHGLGAGSAGARGNKAVVG-PSPPPP 202
PD G +G+K +G P PP P
Sbjct: 251 -----PDNR---TDLKGEKGDKGAMGEPGPPGP 275
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G+P +P +T G PG G PG A G + + PE + L
Sbjct: 510 KGSPGSPGNT-GLPGFPGF-PG--------AQGDPGLKGEKGETLQPEGQVGVPGDPGLR 559
Query: 109 QEPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPG-----PGSR 159
+P R I P V G+PGP+G ++ + G G +PGP PG
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYG 619
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GL G + V AP G AG RG +V P P PPG
Sbjct: 620 PQGEPGLQGTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPG 659
Score = 37.0 bits (84), Expect = 0.015
Identities = 49/174 (28%), Positives = 60/174 (34%), Gaps = 32/174 (18%)
Query: 49 EGAPSTPWDTS--GAPGPAG----------ISPGVVRTAPSLADHP-------LGRQARR 89
EGAP +P G PGP G + P +R P L P + R
Sbjct: 1100 EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGR 1159
Query: 90 AGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGA 149
G GP E+ + R P +P G PG G R+ G A
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL-------PGRKGAMGDA 1212
Query: 150 RAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
GP P P GL G G +R G G+RG+ GP P PPG
Sbjct: 1213 GPRGPTGIEGFPGPPGLPGAIIPGQTGNR-----GPPGSRGSPGAPGP-PGPPG 1260
Score = 34.7 bits (78), Expect = 0.077
Identities = 53/186 (28%), Positives = 67/186 (36%), Gaps = 36/186 (19%)
Query: 49 EGAPSTPW-DTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL 107
+G P P D SG PG G SPG+ + PLG++ G G +
Sbjct: 838 KGDPGIPGLDRSGFPGETG-SPGIPGHQGEMG--PLGQRGY-PGNPG------------I 881
Query: 108 LQEPARDPSI--LRLPRVVGVPGPRGRRHRGEQQQQ------REQRG--------GGARA 151
L P D I + P +G PGP G Q+ + QRG G
Sbjct: 882 LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGN 941
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA--GSAGARGNKAVVGPSPPPPGRRLHSG 209
PGP S G G + P G G G +G K + GP+ PPG R G
Sbjct: 942 PGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPA-GPPGPRGDLG 1000
Query: 210 SESRLG 215
S G
Sbjct: 1001 STGNPG 1006
Score = 33.9 bits (76), Expect = 0.13
Identities = 46/174 (26%), Positives = 59/174 (33%), Gaps = 31/174 (17%)
Query: 48 TEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGR-QARRAGRAGPEVEEVKRRARR 106
+ G+P P G PGP G ++ HP + AG GP
Sbjct: 1246 SRGSPGAP----GPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGP----------- 1290
Query: 107 LLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPGPGPGSRQP 161
P L P G+PGPRG + ++G G PGP P
Sbjct: 1291 --------PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 162 LPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLG 215
G G K+ S P G G+ G G + GP P PPG G + G
Sbjct: 1343 GVRGDPGTLKIISLPGSPG-PPGTPGEPGMQGEPGP-PGPPGNLGPCGPRGKPG 1394
Score = 32.3 bits (72), Expect = 0.38
Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 53/172 (30%)
Query: 50 GAPSTPWDTS-----GAPGPAGIS-----PGVVRTAPSLADHP--LGRQARRAGRAGPEV 97
G P TP +T G PG +G PG+ P +P G + + P
Sbjct: 106 GLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGL----PGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 98 EEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-- 155
EE + + DP + P G+PGP G G PGP
Sbjct: 162 EE------DIELDAKGDPGLPGAPGPQGLPGPPGFP-------------GPVGPPGPPGF 202
Query: 156 ---PGSRQPL-PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
PG+ P P G G R +G G RG K + GP P PPG
Sbjct: 203 FGFPGAMGPRGPKGHMGERVIGHK-----------GERGVKGLTGP-PGPPG 242
Score = 30.8 bits (68), Expect = 1.1
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 31/167 (18%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG+ + G AGPE P
Sbjct: 1065 GPPGPTG-DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGA----------------PGSPG 1107
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG-SRQPLPAGLHGRRKVGSAPDR 178
P + G PGP G G + + G R P PG P P G+ G + P
Sbjct: 1108 SPGLPGKPGPHG--DLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-- 1163
Query: 179 HGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR-LPGFIAL 224
G G K G PPG R + G++ G R PGF L
Sbjct: 1164 --------GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGL 1202
Score = 27.7 bits (60), Expect = 9.4
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P P P +G GP+G H GE+ + G GP PG + L G
Sbjct: 196 PPGPPGFFGFPGAMGPRGPKG--HMGERVIGHKGERGVKGLTGP-PGPPGTVIVTLTG-- 250
Query: 171 KVGSAPDRHGLGAGSAGARGNKAVVG-PSPPPP 202
PD G +G+K +G P PP P
Sbjct: 251 -----PDNR---TDLKGEKGDKGAMGEPGPPGP 275
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 43.5 bits (101), Expect = 2e-04
Identities = 50/176 (28%), Positives = 57/176 (32%), Gaps = 24/176 (13%)
Query: 33 SNNALERARFLQTLCTEGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGR 92
S N +E +T EG P +P S PGP+ P A S ++ P R A AG
Sbjct: 496 SENGVEEDTEGRTGPKEGTPGSP---SETPGPSPAGPAGDEPAESPSETPGPRPAGPAG- 551
Query: 93 AGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGE---QQQQREQRGGGA 149
EPA PS PR G G E R A
Sbjct: 552 ----------------DEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPA 595
Query: 150 RAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLG-AGSAGARGNKAVVGPSPPPPGR 204
+P PG R PAG P G AG A GPSP P R
Sbjct: 596 ESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTR 651
Score = 30.0 bits (66), Expect = 1.9
Identities = 36/145 (24%), Positives = 47/145 (32%), Gaps = 17/145 (11%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
GA A ++ G +T +LA P +AG + VEE + PS
Sbjct: 464 GAGDSAAVASGGAQTL-ALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPS--- 519
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRH 179
PGP G++ + G R GP P+ G R G
Sbjct: 520 -----ETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGP----- 569
Query: 180 GLGAGSAGARGNKAVVGPSPPPPGR 204
AG A GPSP P R
Sbjct: 570 ---AGDEPAESPSETPGPSPAGPTR 591
>gi|63025196 serine arginine rich protein-specific kinase 3 [Homo
sapiens]
Length = 567
Score = 43.5 bits (101), Expect = 2e-04
Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 51 APSTPWDTSGAPGPAGISPGVVRTAPS--LADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
A +T W +GAP P S +V TAP L L + R+ ++ +++ +RLL
Sbjct: 232 AEATEWQQAGAPPP---SRSIVSTAPQEVLQTGKLSKNKRK------KMRRKRKQQKRLL 282
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQ--RGGGARAPGPGPGSRQPLPAGL 166
+E RD L G R G GGARA GP P S P P G
Sbjct: 283 EERLRDLQRLEAMEAATQAEDSGLRLDGGSGSTSSSGCHPGGARA-GPSPASSSPAPGG- 340
Query: 167 HGRR-KVGS----------APDRHGLGAGSAGARGNKAVVGPSPP 200
GR GS +P + +GS+ R ++ PS P
Sbjct: 341 -GRSLSAGSQTSGFSGSLFSPASCSILSGSSNQRETGGLLSPSTP 384
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 43.5 bits (101), Expect = 2e-04
Identities = 58/221 (26%), Positives = 82/221 (37%), Gaps = 48/221 (21%)
Query: 49 EGAPSTPWD---------------TSGAPGPAGISPGVVRTAPSLADHPLGRQARR---- 89
E P PW + GA GPAG +PG+V P P G++
Sbjct: 496 EPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAG-APGLV--GPLGPSGPKGKKGEPILST 552
Query: 90 -AGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGG 148
G G + + R ++ EP +D + LP + G+PG G+ GE+ G
Sbjct: 553 IQGMPGDRGDSGSQGFRGVIGEPGKD-GVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKG 611
Query: 149 ARAPGPGPGS---RQPLPAGLHGRRKVGSAPDRHGL--------------GAGSAGARGN 191
P PG+ P P GL G + P + GL G +G G
Sbjct: 612 HPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGT 671
Query: 192 KAVVGPS-----PPPPGRRLHSGSESRLGARLPGFIALLDL 227
GP P PG+ SGS+ G+ PG + L +L
Sbjct: 672 PGFPGPKGSRGLPGTPGQPGSSGSKGEPGS--PGLVHLPEL 710
Score = 36.6 bits (83), Expect = 0.020
Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 46/181 (25%)
Query: 50 GAPSTPWD-----TSGAPGPAGIS-----PGVVRTAPSLADHPLGRQARRAGRAGPEVEE 99
G+P TP T G+ GP GI PG P ++ HP G++ R G+ GP
Sbjct: 801 GSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGF-PGISGHP-GKKGTR-GKKGPPGSI 857
Query: 100 VKRRARRLLQEPARDPSILRL------PRVVGVP---GPRGRRHRGEQQQQREQRGGGAR 150
VK+ L P +P ++ L P V G+P GP+G ++G
Sbjct: 858 VKKGLPGLKGLPG-NPGLVGLKGSPGSPGVAGLPALSGPKG------------EKGSVGF 904
Query: 151 APGPG-PGSRQPLPAGLHGRRKVGSAPDRHG-LG----AGSAGARGNKAVVGPSPPPPGR 204
PG PG LP G+ G R + P G +G AG+ G +G++ GP P R
Sbjct: 905 VGFPGIPG----LP-GIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPR 959
Query: 205 R 205
R
Sbjct: 960 R 960
Score = 33.5 bits (75), Expect = 0.17
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 115 PSILRLPRVVGVPGPRGRR-----------HRGEQQQQREQRGGGARAPGPGPGSRQ-PL 162
PSI +P G+PGP+G + G + Q+ ++ G + P PG+ L
Sbjct: 1191 PSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISL 1250
Query: 163 PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSG 209
P+ + G+ P R GL G RG GP P PPG + G
Sbjct: 1251 PSLIAGQ---PGDPGRPGLD----GERGRPGPAGP-PGPPGPSSNQG 1289
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-PGPGSRQPLPA-----GLHG 168
P ++ LP + G PGPRG + PG PG + LP GL G
Sbjct: 702 PGLVHLPELPGFPGPRGEK----------------GLPGFPGLPGKDGLPGMIGSPGLPG 745
Query: 169 RRKVGSAPDRHGLGAGSAGARGNKAVVG 196
+ G+ D G G+ G +G + + G
Sbjct: 746 SK--GATGDIFGAENGAPGEQGLQGLTG 771
Score = 29.3 bits (64), Expect = 3.2
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 39/146 (26%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG++ P G ++ + P + + + DP
Sbjct: 134 GFPGPDGY-PGLLG--------PPGLPGQKGSKGDPVLAPGSFKGMK------GDPG--- 175
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL-PAGLHGRRKVGSAPDR 178
LP + G+ GP+G GA P PG + P P G G PD
Sbjct: 176 LPGLDGITGPQGA-----------PGFPGAVGPAGPPGLQGPPGPPGPLG-------PDG 217
Query: 179 H-GLG-AGSAGARGNKAVVGPSPPPP 202
+ GLG G G +G+ + GP+ PPP
Sbjct: 218 NMGLGFQGEKGVKGDVGLPGPAGPPP 243
Score = 28.5 bits (62), Expect = 5.5
Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 19/117 (16%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-------PGSRQPLPAGLHGRRKVG 173
P G PGP+G R Q G PG PG P P G G
Sbjct: 669 PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGF--PGPRGEKGLPGFP 726
Query: 174 SAPDRHGLGA--GSAGARGNKAVVGP-------SPPPPGRRLHSGSESRLG-ARLPG 220
P + GL GS G G+K G +P G + +G + LG + LPG
Sbjct: 727 GLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPG 783
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 43.5 bits (101), Expect = 2e-04
Identities = 58/221 (26%), Positives = 82/221 (37%), Gaps = 48/221 (21%)
Query: 49 EGAPSTPWD---------------TSGAPGPAGISPGVVRTAPSLADHPLGRQARR---- 89
E P PW + GA GPAG +PG+V P P G++
Sbjct: 495 EPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAG-APGLV--GPLGPSGPKGKKGEPILST 551
Query: 90 -AGRAGPEVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGG 148
G G + + R ++ EP +D + LP + G+PG G+ GE+ G
Sbjct: 552 IQGMPGDRGDSGSQGFRGVIGEPGKD-GVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKG 610
Query: 149 ARAPGPGPGS---RQPLPAGLHGRRKVGSAPDRHGL--------------GAGSAGARGN 191
P PG+ P P GL G + P + GL G +G G
Sbjct: 611 HPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGT 670
Query: 192 KAVVGPS-----PPPPGRRLHSGSESRLGARLPGFIALLDL 227
GP P PG+ SGS+ G+ PG + L +L
Sbjct: 671 PGFPGPKGSRGLPGTPGQPGSSGSKGEPGS--PGLVHLPEL 709
Score = 36.6 bits (83), Expect = 0.020
Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 46/181 (25%)
Query: 50 GAPSTPWD-----TSGAPGPAGIS-----PGVVRTAPSLADHPLGRQARRAGRAGPEVEE 99
G+P TP T G+ GP GI PG P ++ HP G++ R G+ GP
Sbjct: 800 GSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGF-PGISGHP-GKKGTR-GKKGPPGSI 856
Query: 100 VKRRARRLLQEPARDPSILRL------PRVVGVP---GPRGRRHRGEQQQQREQRGGGAR 150
VK+ L P +P ++ L P V G+P GP+G ++G
Sbjct: 857 VKKGLPGLKGLPG-NPGLVGLKGSPGSPGVAGLPALSGPKG------------EKGSVGF 903
Query: 151 APGPG-PGSRQPLPAGLHGRRKVGSAPDRHG-LG----AGSAGARGNKAVVGPSPPPPGR 204
PG PG LP G+ G R + P G +G AG+ G +G++ GP P R
Sbjct: 904 VGFPGIPG----LP-GIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPR 958
Query: 205 R 205
R
Sbjct: 959 R 959
Score = 33.5 bits (75), Expect = 0.17
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 115 PSILRLPRVVGVPGPRGRR-----------HRGEQQQQREQRGGGARAPGPGPGSRQ-PL 162
PSI +P G+PGP+G + G + Q+ ++ G + P PG+ L
Sbjct: 1190 PSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISL 1249
Query: 163 PAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSG 209
P+ + G+ P R GL G RG GP P PPG + G
Sbjct: 1250 PSLIAGQ---PGDPGRPGLD----GERGRPGPAGP-PGPPGPSSNQG 1288
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-PGPGSRQPLPA-----GLHG 168
P ++ LP + G PGPRG + PG PG + LP GL G
Sbjct: 701 PGLVHLPELPGFPGPRGEK----------------GLPGFPGLPGKDGLPGMIGSPGLPG 744
Query: 169 RRKVGSAPDRHGLGAGSAGARGNKAVVG 196
+ G+ D G G+ G +G + + G
Sbjct: 745 SK--GATGDIFGAENGAPGEQGLQGLTG 770
Score = 29.3 bits (64), Expect = 3.2
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 39/146 (26%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PG++ P G ++ + P + + + DP
Sbjct: 133 GFPGPDGY-PGLLG--------PPGLPGQKGSKGDPVLAPGSFKGMK------GDPG--- 174
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPL-PAGLHGRRKVGSAPDR 178
LP + G+ GP+G GA P PG + P P G G PD
Sbjct: 175 LPGLDGITGPQGA-----------PGFPGAVGPAGPPGLQGPPGPPGPLG-------PDG 216
Query: 179 H-GLG-AGSAGARGNKAVVGPSPPPP 202
+ GLG G G +G+ + GP+ PPP
Sbjct: 217 NMGLGFQGEKGVKGDVGLPGPAGPPP 242
Score = 28.5 bits (62), Expect = 5.5
Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 19/117 (16%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-------PGSRQPLPAGLHGRRKVG 173
P G PGP+G R Q G PG PG P P G G
Sbjct: 668 PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGF--PGPRGEKGLPGFP 725
Query: 174 SAPDRHGLGA--GSAGARGNKAVVGP-------SPPPPGRRLHSGSESRLG-ARLPG 220
P + GL GS G G+K G +P G + +G + LG + LPG
Sbjct: 726 GLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPG 782
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 43.1 bits (100), Expect = 2e-04
Identities = 55/201 (27%), Positives = 69/201 (34%), Gaps = 25/201 (12%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P D G PG G+ P L + G GP + + +A+ +LQ
Sbjct: 475 GPPGDPGDR-GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQ 533
Query: 110 E-------PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----------GGARA 151
+ P + P VG PG G + + RG G
Sbjct: 534 QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGR 593
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSE 211
PG G P G G R P GL G G RG + GP P PPG G +
Sbjct: 594 PGADGGRGMPGEPGAKGDRGFDGLP---GL-PGDKGHRGERGPQGP-PGPPGDDGMRGED 648
Query: 212 SRLGAR-LPGFIALLDLCDPR 231
+G R LPG L PR
Sbjct: 649 GEIGPRGLPGEAGPRGLLGPR 669
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/130 (33%), Positives = 48/130 (36%), Gaps = 33/130 (25%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRG-----------GGARAPGPGPGSRQPL----PAGLH 167
V G PGPRG+R + R RG GG PGP PG R P P G
Sbjct: 884 VAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGP-PGERGPQGPQGPVGFP 942
Query: 168 GRRKVGSAPDRHGLGA-----------GSAGARGNKAVVGPSPP-----PPGRRLHSGSE 211
G + P + GL G G G VVGP P P G R H G
Sbjct: 943 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPP 1002
Query: 212 SRLGAR-LPG 220
G + LPG
Sbjct: 1003 GPPGEQGLPG 1012
Score = 37.4 bits (85), Expect = 0.012
Identities = 50/175 (28%), Positives = 61/175 (34%), Gaps = 31/175 (17%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL- 107
E P P G GP G+ PG A S + + G+ G + ++ +
Sbjct: 1106 EKGPQGPAGRDGVQGPVGL-PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP 1164
Query: 108 -LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGL 166
LQ P P I G PGPRG QQ Q+G PGP P P GL
Sbjct: 1165 GLQGPVGAPGIAGGD---GEPGPRG------QQGMFGQKGDEGARGFPGP----PGPIGL 1211
Query: 167 HGRRKVGSAPDRHGLGAGSAGARGNKAVVGP--SPPPPGRRLHSGSESRLGARLP 219
G G G +G VGP P PPG R G G + P
Sbjct: 1212 QGL-------------PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGP 1253
Score = 37.0 bits (84), Expect = 0.015
Identities = 50/179 (27%), Positives = 61/179 (34%), Gaps = 37/179 (20%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEP 111
P+ P + GA GP G PG T S D P G R G GP+
Sbjct: 896 PTGPRGSRGARGPTG-KPGPKGT--SGGDGPPGPPGER-GPQGPQ--------------- 936
Query: 112 ARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--------SRQPLP 163
+ P G PGP G+ QR + G + PGPG + + P
Sbjct: 937 ----GPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 992
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP-----SPPPPGRRLHSGSESRLGAR 217
G G P GL G+AG G K GP P G R G GA+
Sbjct: 993 IGERGHPGPPGPPGEQGL-PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 1050
Score = 36.2 bits (82), Expect = 0.026
Identities = 46/148 (31%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARR--AGRAGPEVEEVKRRARRLLQEPARDPSI 117
GA G G+ G P P+G R AG AGP + P R
Sbjct: 1048 GAQGAPGLKGG---EGPQGPPGPVGSPGERGSAGTAGP------------IGLPGR---- 1088
Query: 118 LRLPRVVGVPGPRGRRHR-GEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAP 176
P G PGP G + GE+ Q G + P PG PAG G G
Sbjct: 1089 ---PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG-----PAGPAG--SPGEDG 1138
Query: 177 DRHGLGA-GSAGARGNKAVVGPSPPPPG 203
D+ +G G G++G+K GP P PPG
Sbjct: 1139 DKGEIGEPGQKGSKGDKGENGP-PGPPG 1165
Score = 35.4 bits (80), Expect = 0.045
Identities = 53/162 (32%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGPAG P + P L P G R GP A L P ++L
Sbjct: 454 GPPGPAG--PAGIMGPPGLQG-PTGPPGDPGDR-GPPGRPGLPGADGL---PGPPGTMLM 506
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRH 179
LP G G +G Q+ Q + AR GP P P GL GR P
Sbjct: 507 LPFRYGGDGSKGPTISA-QEAQAQAILQQARIALRGP----PGPMGLTGR------PGPV 555
Query: 180 GLGAGSAGARGNKAVVGPSPP-----PPGRRLHSGSESRLGA 216
G G GS+GA+G GP P PPG G R GA
Sbjct: 556 G-GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGA 596
Score = 33.5 bits (75), Expect = 0.17
Identities = 53/166 (31%), Positives = 64/166 (38%), Gaps = 24/166 (14%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQ 109
P P +G PGP G + P A GRQ + G AG E K Q
Sbjct: 1358 PPGPSGEAGPPGPPG------KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP-Q 1410
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG----PGSR----QP 161
PA P L G+PGP G + Q G PG PGS+ P
Sbjct: 1411 GPAGKPGPEGLR---GIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1467
Query: 162 LPAGLHGRR-KVGSAPDRHGLGA-GSAGARGNKAVVGPSPP--PPG 203
GL G + G DR G GS GA+G+ + GP+ P PPG
Sbjct: 1468 GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1513
Score = 32.3 bits (72), Expect = 0.38
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 36/127 (28%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPG---------------------- 153
P G PGP G G + +R ++G G A PG
Sbjct: 1269 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD 1328
Query: 154 PGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR---LHSGS 210
PGP +P PAG G VG G G G G GP P PPG+R +G+
Sbjct: 1329 PGPPG-EPGPAGQDG---VGGDKGEDG-DPGQPGPPGPSGEAGP-PGPPGKRGPPGAAGA 1382
Query: 211 ESRLGAR 217
E R G +
Sbjct: 1383 EGRQGEK 1389
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 43.1 bits (100), Expect = 2e-04
Identities = 55/201 (27%), Positives = 69/201 (34%), Gaps = 25/201 (12%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P D G PG G+ P L + G GP + + +A+ +LQ
Sbjct: 424 GPPGDPGDR-GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQ 482
Query: 110 E-------PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----------GGARA 151
+ P + P VG PG G + + RG G
Sbjct: 483 QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGR 542
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSE 211
PG G P G G R P GL G G RG + GP P PPG G +
Sbjct: 543 PGADGGRGMPGEPGAKGDRGFDGLP---GL-PGDKGHRGERGPQGP-PGPPGDDGMRGED 597
Query: 212 SRLGAR-LPGFIALLDLCDPR 231
+G R LPG L PR
Sbjct: 598 GEIGPRGLPGEAGPRGLLGPR 618
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/130 (33%), Positives = 48/130 (36%), Gaps = 33/130 (25%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRG-----------GGARAPGPGPGSRQPL----PAGLH 167
V G PGPRG+R + R RG GG PGP PG R P P G
Sbjct: 833 VAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGP-PGERGPQGPQGPVGFP 891
Query: 168 GRRKVGSAPDRHGLGA-----------GSAGARGNKAVVGPSPP-----PPGRRLHSGSE 211
G + P + GL G G G VVGP P P G R H G
Sbjct: 892 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPP 951
Query: 212 SRLGAR-LPG 220
G + LPG
Sbjct: 952 GPPGEQGLPG 961
Score = 37.4 bits (85), Expect = 0.012
Identities = 50/175 (28%), Positives = 61/175 (34%), Gaps = 31/175 (17%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL- 107
E P P G GP G+ PG A S + + G+ G + ++ +
Sbjct: 1055 EKGPQGPAGRDGVQGPVGL-PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP 1113
Query: 108 -LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGL 166
LQ P P I G PGPRG QQ Q+G PGP P P GL
Sbjct: 1114 GLQGPVGAPGIAGGD---GEPGPRG------QQGMFGQKGDEGARGFPGP----PGPIGL 1160
Query: 167 HGRRKVGSAPDRHGLGAGSAGARGNKAVVGP--SPPPPGRRLHSGSESRLGARLP 219
G G G +G VGP P PPG R G G + P
Sbjct: 1161 QGL-------------PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGP 1202
Score = 37.0 bits (84), Expect = 0.015
Identities = 50/179 (27%), Positives = 61/179 (34%), Gaps = 37/179 (20%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEP 111
P+ P + GA GP G PG T S D P G R G GP+
Sbjct: 845 PTGPRGSRGARGPTG-KPGPKGT--SGGDGPPGPPGER-GPQGPQ--------------- 885
Query: 112 ARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--------SRQPLP 163
+ P G PGP G+ QR + G + PGPG + + P
Sbjct: 886 ----GPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 941
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP-----SPPPPGRRLHSGSESRLGAR 217
G G P GL G+AG G K GP P G R G GA+
Sbjct: 942 IGERGHPGPPGPPGEQGL-PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 999
Score = 36.2 bits (82), Expect = 0.026
Identities = 46/148 (31%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARR--AGRAGPEVEEVKRRARRLLQEPARDPSI 117
GA G G+ G P P+G R AG AGP + P R
Sbjct: 997 GAQGAPGLKGG---EGPQGPPGPVGSPGERGSAGTAGP------------IGLPGR---- 1037
Query: 118 LRLPRVVGVPGPRGRRHR-GEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAP 176
P G PGP G + GE+ Q G + P PG PAG G G
Sbjct: 1038 ---PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG-----PAGPAG--SPGEDG 1087
Query: 177 DRHGLGA-GSAGARGNKAVVGPSPPPPG 203
D+ +G G G++G+K GP P PPG
Sbjct: 1088 DKGEIGEPGQKGSKGDKGENGP-PGPPG 1114
Score = 35.4 bits (80), Expect = 0.045
Identities = 53/162 (32%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGPAG P + P L P G R GP A L P ++L
Sbjct: 403 GPPGPAG--PAGIMGPPGLQG-PTGPPGDPGDR-GPPGRPGLPGADGL---PGPPGTMLM 455
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRH 179
LP G G +G Q+ Q + AR GP P P GL GR P
Sbjct: 456 LPFRYGGDGSKGPTISA-QEAQAQAILQQARIALRGP----PGPMGLTGR------PGPV 504
Query: 180 GLGAGSAGARGNKAVVGPSPP-----PPGRRLHSGSESRLGA 216
G G GS+GA+G GP P PPG G R GA
Sbjct: 505 G-GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGA 545
Score = 33.5 bits (75), Expect = 0.17
Identities = 53/166 (31%), Positives = 64/166 (38%), Gaps = 24/166 (14%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQ 109
P P +G PGP G + P A GRQ + G AG E K Q
Sbjct: 1307 PPGPSGEAGPPGPPG------KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP-Q 1359
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG----PGSR----QP 161
PA P L G+PGP G + Q G PG PGS+ P
Sbjct: 1360 GPAGKPGPEGLR---GIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1416
Query: 162 LPAGLHGRR-KVGSAPDRHGLGA-GSAGARGNKAVVGPSPP--PPG 203
GL G + G DR G GS GA+G+ + GP+ P PPG
Sbjct: 1417 GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1462
Score = 32.3 bits (72), Expect = 0.38
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 36/127 (28%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPG---------------------- 153
P G PGP G G + +R ++G G A PG
Sbjct: 1218 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD 1277
Query: 154 PGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR---LHSGS 210
PGP +P PAG G VG G G G G GP P PPG+R +G+
Sbjct: 1278 PGPPG-EPGPAGQDG---VGGDKGEDG-DPGQPGPPGPSGEAGP-PGPPGKRGPPGAAGA 1331
Query: 211 ESRLGAR 217
E R G +
Sbjct: 1332 EGRQGEK 1338
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 43.1 bits (100), Expect = 2e-04
Identities = 55/201 (27%), Positives = 69/201 (34%), Gaps = 25/201 (12%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P D G PG G+ P L + G GP + + +A+ +LQ
Sbjct: 463 GPPGDPGDR-GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQ 521
Query: 110 E-------PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----------GGARA 151
+ P + P VG PG G + + RG G
Sbjct: 522 QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGR 581
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSE 211
PG G P G G R P GL G G RG + GP P PPG G +
Sbjct: 582 PGADGGRGMPGEPGAKGDRGFDGLP---GL-PGDKGHRGERGPQGP-PGPPGDDGMRGED 636
Query: 212 SRLGAR-LPGFIALLDLCDPR 231
+G R LPG L PR
Sbjct: 637 GEIGPRGLPGEAGPRGLLGPR 657
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/130 (33%), Positives = 48/130 (36%), Gaps = 33/130 (25%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRG-----------GGARAPGPGPGSRQPL----PAGLH 167
V G PGPRG+R + R RG GG PGP PG R P P G
Sbjct: 872 VAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGP-PGERGPQGPQGPVGFP 930
Query: 168 GRRKVGSAPDRHGLGA-----------GSAGARGNKAVVGPSPP-----PPGRRLHSGSE 211
G + P + GL G G G VVGP P P G R H G
Sbjct: 931 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPP 990
Query: 212 SRLGAR-LPG 220
G + LPG
Sbjct: 991 GPPGEQGLPG 1000
Score = 37.4 bits (85), Expect = 0.012
Identities = 50/175 (28%), Positives = 61/175 (34%), Gaps = 31/175 (17%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRL- 107
E P P G GP G+ PG A S + + G+ G + ++ +
Sbjct: 1094 EKGPQGPAGRDGVQGPVGL-PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP 1152
Query: 108 -LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGL 166
LQ P P I G PGPRG QQ Q+G PGP P P GL
Sbjct: 1153 GLQGPVGAPGIAGGD---GEPGPRG------QQGMFGQKGDEGARGFPGP----PGPIGL 1199
Query: 167 HGRRKVGSAPDRHGLGAGSAGARGNKAVVGP--SPPPPGRRLHSGSESRLGARLP 219
G G G +G VGP P PPG R G G + P
Sbjct: 1200 QGL-------------PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGP 1241
Score = 37.0 bits (84), Expect = 0.015
Identities = 50/179 (27%), Positives = 61/179 (34%), Gaps = 37/179 (20%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEP 111
P+ P + GA GP G PG T S D P G R G GP+
Sbjct: 884 PTGPRGSRGARGPTG-KPGPKGT--SGGDGPPGPPGER-GPQGPQ--------------- 924
Query: 112 ARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--------SRQPLP 163
+ P G PGP G+ QR + G + PGPG + + P
Sbjct: 925 ----GPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 980
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP-----SPPPPGRRLHSGSESRLGAR 217
G G P GL G+AG G K GP P G R G GA+
Sbjct: 981 IGERGHPGPPGPPGEQGL-PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 1038
Score = 36.2 bits (82), Expect = 0.026
Identities = 46/148 (31%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARR--AGRAGPEVEEVKRRARRLLQEPARDPSI 117
GA G G+ G P P+G R AG AGP + P R
Sbjct: 1036 GAQGAPGLKGG---EGPQGPPGPVGSPGERGSAGTAGP------------IGLPGR---- 1076
Query: 118 LRLPRVVGVPGPRGRRHR-GEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAP 176
P G PGP G + GE+ Q G + P PG PAG G G
Sbjct: 1077 ---PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG-----PAGPAG--SPGEDG 1126
Query: 177 DRHGLGA-GSAGARGNKAVVGPSPPPPG 203
D+ +G G G++G+K GP P PPG
Sbjct: 1127 DKGEIGEPGQKGSKGDKGENGP-PGPPG 1153
Score = 35.4 bits (80), Expect = 0.045
Identities = 53/162 (32%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGPAG P + P L P G R GP A L P ++L
Sbjct: 442 GPPGPAG--PAGIMGPPGLQG-PTGPPGDPGDR-GPPGRPGLPGADGL---PGPPGTMLM 494
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRH 179
LP G G +G Q+ Q + AR GP P P GL GR P
Sbjct: 495 LPFRYGGDGSKGPTISA-QEAQAQAILQQARIALRGP----PGPMGLTGR------PGPV 543
Query: 180 GLGAGSAGARGNKAVVGPSPP-----PPGRRLHSGSESRLGA 216
G G GS+GA+G GP P PPG G R GA
Sbjct: 544 G-GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGA 584
Score = 33.5 bits (75), Expect = 0.17
Identities = 53/166 (31%), Positives = 64/166 (38%), Gaps = 24/166 (14%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQ 109
P P +G PGP G + P A GRQ + G AG E K Q
Sbjct: 1346 PPGPSGEAGPPGPPG------KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP-Q 1398
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG----PGSR----QP 161
PA P L G+PGP G + Q G PG PGS+ P
Sbjct: 1399 GPAGKPGPEGLR---GIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1455
Query: 162 LPAGLHGRR-KVGSAPDRHGLGA-GSAGARGNKAVVGPSPP--PPG 203
GL G + G DR G GS GA+G+ + GP+ P PPG
Sbjct: 1456 GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1501
Score = 32.3 bits (72), Expect = 0.38
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 36/127 (28%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPG---------------------- 153
P G PGP G G + +R ++G G A PG
Sbjct: 1257 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD 1316
Query: 154 PGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR---LHSGS 210
PGP +P PAG G VG G G G G GP P PPG+R +G+
Sbjct: 1317 PGPPG-EPGPAGQDG---VGGDKGEDG-DPGQPGPPGPSGEAGP-PGPPGKRGPPGAAGA 1370
Query: 211 ESRLGAR 217
E R G +
Sbjct: 1371 EGRQGEK 1377
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/163 (33%), Positives = 63/163 (38%), Gaps = 33/163 (20%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PGV P L P GR G +V A L P R+
Sbjct: 903 GFPGPPG-PPGV----PGLPGEP--------GRFGVNSSDVPGPAG-LPGVPGREGP--- 945
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPGPGSRQPLPAGLHGRRKVGSAPD 177
P G+PGP G R + Q+G G A APG P PAG G + AP
Sbjct: 946 -PGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP- 1003
Query: 178 RHGLGAGSAGARGNKAVVGPSPP-PPGRRLHSGSESRLGARLP 219
G AG G P PP PPG L +G + G+ P
Sbjct: 1004 ------GPAGPPG-----PPGPPGPPGPGLPAGFDDMEGSGGP 1035
Score = 42.0 bits (97), Expect = 5e-04
Identities = 54/177 (30%), Positives = 69/177 (38%), Gaps = 21/177 (11%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G P P G PG G+ PG + R G AGP+ + R +R
Sbjct: 1047 QGPPGLP-GLKGDPGVPGL-PGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEK 1104
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQR-------EQRGGGARAPGP-GP---- 156
+P +D + P + G PGP G +Q E R G A PGP GP
Sbjct: 1105 GDPGKDG--VGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNL 1162
Query: 157 GSR----QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSG 209
GS+ P P G G +PD LG GA+G GP P P GR + G
Sbjct: 1163 GSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGP-PGPYGRPGYKG 1218
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAG 184
G+PGP+G RG+ PGP PG + P G GR+ P G +
Sbjct: 1366 GIPGPKGESIRGQ--------------PGP-PGPQGPPGIGYEGRQGPPGPPGPPGPPSF 1410
Query: 185 SAGARGNKAVVGPSPPPPG 203
R +V GP P PPG
Sbjct: 1411 PGPHRQTISVPGP-PGPPG 1428
Score = 31.2 bits (69), Expect = 0.85
Identities = 49/186 (26%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 59 SGAPGPAGI-----------------------SPGVVRTAPSLADHPLGRQARRAGRAGP 95
+GAPGPAG S G + AD P G + P
Sbjct: 1000 AGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 1059
Query: 96 EVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRG----RRHRGEQQQQREQRGGGARA 151
V + + + P LP G+ GP+G R RGE+ + G
Sbjct: 1060 GVPGLPGAKGEVGADGV--PGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGL 1117
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA-----GSAGARGNKAVVGP--SPPPPGR 204
PGP PG P+ V S P G G AG +GN G SP P G
Sbjct: 1118 PGP-PGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGE 1176
Query: 205 RLHSGS 210
+ GS
Sbjct: 1177 KGEPGS 1182
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 128 GPRGRRHRGEQQQQREQRGGG----ARAPGPG--PGSRQ----PLPAGLHGRRKVGSAPD 177
G +G R Q+ +R + GGG + PGP PG R P P G R + G
Sbjct: 1325 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1384
Query: 178 RHGLGAGSAGARGNKAVVGPSPPP 201
+ G G G +G GP PP
Sbjct: 1385 QGPPGIGYEGRQGPPGPPGPPGPP 1408
Score = 29.3 bits (64), Expect = 3.2
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 125 GVPGPRGRRHR------------GEQQQQREQRGGGARAPGP--GPGSR-------QPLP 163
G PGP+G + G Q+ + G PGP PG + +P
Sbjct: 1169 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 1228
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGS 210
G++G + P LG G G G GP P PPG ++ +
Sbjct: 1229 PGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGP-PGPPGTPVYDSN 1274
Score = 28.1 bits (61), Expect = 7.2
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGS 174
P++ +P G PGP GR + + G + GP P VG
Sbjct: 795 PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPG------DVGP 848
Query: 175 APDRHGLGAGSAGARGNKAVVGPSPP 200
D+ G G G G + GP P
Sbjct: 849 KGDKGDPGVGERGPPGPQGPPGPPGP 874
Score = 28.1 bits (61), Expect = 7.2
Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 60 GAPGPAGIS--PGVVRTAPSLADHPLGRQAR-RAGRAGPEVEEVKRRARRLLQEPARDPS 116
G+PGP G PG + + A P + A+ G GP + + + P R
Sbjct: 1169 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 1228
Query: 117 ILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAP 176
P + G+ G +G G+ RG PGP P S P
Sbjct: 1229 ----PGMNGLKGEKGEP--GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1282
Query: 177 DRHGL--GAGSAGARGNKAVVGPSPPPPGR 204
GL G G +G K VGP P PPG+
Sbjct: 1283 GPPGLPGNQGPPGPKGAKGEVGP-PGPPGQ 1311
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/163 (33%), Positives = 63/163 (38%), Gaps = 33/163 (20%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PGV P L P GR G +V A L P R+
Sbjct: 488 GFPGPPG-PPGV----PGLPGEP--------GRFGVNSSDVPGPAG-LPGVPGREGP--- 530
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPGPGSRQPLPAGLHGRRKVGSAPD 177
P G+PGP G R + Q+G G A APG P PAG G + AP
Sbjct: 531 -PGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP- 588
Query: 178 RHGLGAGSAGARGNKAVVGPSPP-PPGRRLHSGSESRLGARLP 219
G AG G P PP PPG L +G + G+ P
Sbjct: 589 ------GPAGPPG-----PPGPPGPPGPGLPAGFDDMEGSGGP 620
Score = 42.0 bits (97), Expect = 5e-04
Identities = 54/177 (30%), Positives = 69/177 (38%), Gaps = 21/177 (11%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G P P G PG G+ PG + R G AGP+ + R +R
Sbjct: 632 QGPPGLP-GLKGDPGVPGL-PGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEK 689
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQR-------EQRGGGARAPGP-GP---- 156
+P +D + P + G PGP G +Q E R G A PGP GP
Sbjct: 690 GDPGKDG--VGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNL 747
Query: 157 GSR----QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSG 209
GS+ P P G G +PD LG GA+G GP P P GR + G
Sbjct: 748 GSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGP-PGPYGRPGYKG 803
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAG 184
G+PGP+G RG+ PGP PG + P G GR+ P G +
Sbjct: 951 GIPGPKGESIRGQ--------------PGP-PGPQGPPGIGYEGRQGPPGPPGPPGPPSF 995
Query: 185 SAGARGNKAVVGPSPPPPG 203
R +V GP P PPG
Sbjct: 996 PGPHRQTISVPGP-PGPPG 1013
Score = 31.2 bits (69), Expect = 0.85
Identities = 49/186 (26%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 59 SGAPGPAGI-----------------------SPGVVRTAPSLADHPLGRQARRAGRAGP 95
+GAPGPAG S G + AD P G + P
Sbjct: 585 AGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 644
Query: 96 EVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRG----RRHRGEQQQQREQRGGGARA 151
V + + + P LP G+ GP+G R RGE+ + G
Sbjct: 645 GVPGLPGAKGEVGADGV--PGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGL 702
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA-----GSAGARGNKAVVGP--SPPPPGR 204
PGP PG P+ V S P G G AG +GN G SP P G
Sbjct: 703 PGP-PGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGE 761
Query: 205 RLHSGS 210
+ GS
Sbjct: 762 KGEPGS 767
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 128 GPRGRRHRGEQQQQREQRGGG----ARAPGPG--PGSRQ----PLPAGLHGRRKVGSAPD 177
G +G R Q+ +R + GGG + PGP PG R P P G R + G
Sbjct: 910 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 969
Query: 178 RHGLGAGSAGARGNKAVVGPSPPP 201
+ G G G +G GP PP
Sbjct: 970 QGPPGIGYEGRQGPPGPPGPPGPP 993
Score = 29.3 bits (64), Expect = 3.2
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 125 GVPGPRGRRHR------------GEQQQQREQRGGGARAPGP--GPGSR-------QPLP 163
G PGP+G + G Q+ + G PGP PG + +P
Sbjct: 754 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 813
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGS 210
G++G + P LG G G G GP P PPG ++ +
Sbjct: 814 PGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGP-PGPPGTPVYDSN 859
Score = 28.1 bits (61), Expect = 7.2
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGS 174
P++ +P G PGP GR + + G + GP P VG
Sbjct: 380 PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPG------DVGP 433
Query: 175 APDRHGLGAGSAGARGNKAVVGPSPP 200
D+ G G G G + GP P
Sbjct: 434 KGDKGDPGVGERGPPGPQGPPGPPGP 459
Score = 28.1 bits (61), Expect = 7.2
Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 60 GAPGPAGIS--PGVVRTAPSLADHPLGRQAR-RAGRAGPEVEEVKRRARRLLQEPARDPS 116
G+PGP G PG + + A P + A+ G GP + + + P R
Sbjct: 754 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 813
Query: 117 ILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAP 176
P + G+ G +G G+ RG PGP P S P
Sbjct: 814 ----PGMNGLKGEKGEP--GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 867
Query: 177 DRHGL--GAGSAGARGNKAVVGPSPPPPGR 204
GL G G +G K VGP P PPG+
Sbjct: 868 GPPGLPGNQGPPGPKGAKGEVGP-PGPPGQ 896
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/163 (33%), Positives = 63/163 (38%), Gaps = 33/163 (20%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G PGV P L P GR G +V A L P R+
Sbjct: 668 GFPGPPG-PPGV----PGLPGEP--------GRFGVNSSDVPGPAG-LPGVPGREGP--- 710
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPGPGSRQPLPAGLHGRRKVGSAPD 177
P G+PGP G R + Q+G G A APG P PAG G + AP
Sbjct: 711 -PGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP- 768
Query: 178 RHGLGAGSAGARGNKAVVGPSPP-PPGRRLHSGSESRLGARLP 219
G AG G P PP PPG L +G + G+ P
Sbjct: 769 ------GPAGPPG-----PPGPPGPPGPGLPAGFDDMEGSGGP 800
Score = 42.0 bits (97), Expect = 5e-04
Identities = 54/177 (30%), Positives = 69/177 (38%), Gaps = 21/177 (11%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
+G P P G PG G+ PG + R G AGP+ + R +R
Sbjct: 812 QGPPGLP-GLKGDPGVPGL-PGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEK 869
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQR-------EQRGGGARAPGP-GP---- 156
+P +D + P + G PGP G +Q E R G A PGP GP
Sbjct: 870 GDPGKDG--VGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNL 927
Query: 157 GSR----QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSG 209
GS+ P P G G +PD LG GA+G GP P P GR + G
Sbjct: 928 GSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGP-PGPYGRPGYKG 983
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAG 184
G+PGP+G RG+ PGP PG + P G GR+ P G +
Sbjct: 1131 GIPGPKGESIRGQ--------------PGP-PGPQGPPGIGYEGRQGPPGPPGPPGPPSF 1175
Query: 185 SAGARGNKAVVGPSPPPPG 203
R +V GP P PPG
Sbjct: 1176 PGPHRQTISVPGP-PGPPG 1193
Score = 31.2 bits (69), Expect = 0.85
Identities = 49/186 (26%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 59 SGAPGPAGI-----------------------SPGVVRTAPSLADHPLGRQARRAGRAGP 95
+GAPGPAG S G + AD P G + P
Sbjct: 765 AGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 824
Query: 96 EVEEVKRRARRLLQEPARDPSILRLPRVVGVPGPRG----RRHRGEQQQQREQRGGGARA 151
V + + + P LP G+ GP+G R RGE+ + G
Sbjct: 825 GVPGLPGAKGEVGADGV--PGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGL 882
Query: 152 PGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA-----GSAGARGNKAVVGP--SPPPPGR 204
PGP PG P+ V S P G G AG +GN G SP P G
Sbjct: 883 PGP-PGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGE 941
Query: 205 RLHSGS 210
+ GS
Sbjct: 942 KGEPGS 947
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 128 GPRGRRHRGEQQQQREQRGGG----ARAPGPG--PGSRQ----PLPAGLHGRRKVGSAPD 177
G +G R Q+ +R + GGG + PGP PG R P P G R + G
Sbjct: 1090 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1149
Query: 178 RHGLGAGSAGARGNKAVVGPSPPP 201
+ G G G +G GP PP
Sbjct: 1150 QGPPGIGYEGRQGPPGPPGPPGPP 1173
Score = 29.3 bits (64), Expect = 3.2
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 125 GVPGPRGRRHR------------GEQQQQREQRGGGARAPGP--GPGSR-------QPLP 163
G PGP+G + G Q+ + G PGP PG + +P
Sbjct: 934 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 993
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGS 210
G++G + P LG G G G GP P PPG ++ +
Sbjct: 994 PGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGP-PGPPGTPVYDSN 1039
Score = 28.1 bits (61), Expect = 7.2
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGS 174
P++ +P G PGP GR + + G + GP P VG
Sbjct: 560 PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPG------DVGP 613
Query: 175 APDRHGLGAGSAGARGNKAVVGPSPP 200
D+ G G G G + GP P
Sbjct: 614 KGDKGDPGVGERGPPGPQGPPGPPGP 639
Score = 28.1 bits (61), Expect = 7.2
Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 60 GAPGPAGIS--PGVVRTAPSLADHPLGRQAR-RAGRAGPEVEEVKRRARRLLQEPARDPS 116
G+PGP G PG + + A P + A+ G GP + + + P R
Sbjct: 934 GSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 993
Query: 117 ILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAP 176
P + G+ G +G G+ RG PGP P S P
Sbjct: 994 ----PGMNGLKGEKGEP--GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1047
Query: 177 DRHGL--GAGSAGARGNKAVVGPSPPPPGR 204
GL G G +G K VGP P PPG+
Sbjct: 1048 GPPGLPGNQGPPGPKGAKGEVGP-PGPPGQ 1076
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 43.1 bits (100), Expect = 2e-04
Identities = 53/174 (30%), Positives = 67/174 (38%), Gaps = 23/174 (13%)
Query: 50 GAPSTP--WDTSGAPGPAGI--SPGVVRTA-----PSLADHPLGRQARRAGRAGPEVEEV 100
G P P W G GP G PG+V P L +P + G G EV +
Sbjct: 193 GLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPG-EVGQQ 251
Query: 101 KRRARRLLQEPAR------DPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGP 154
LL EP + I +P +VG+PGP GR+ + E+ G P
Sbjct: 252 GSPGPTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRG 311
Query: 155 GPGS-RQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP-----SPPPP 202
PGS P GL G + P GL G G GN+ GP +PP P
Sbjct: 312 DPGSYGSPGFPGLKGELGLVGDPGLFGL-IGPKGDPGNRGHPGPPGVLVTPPLP 364
Score = 38.9 bits (89), Expect = 0.004
Identities = 57/189 (30%), Positives = 72/189 (38%), Gaps = 41/189 (21%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPAR------ 113
G PGP PGV+ T P P G GR G + LL P
Sbjct: 350 GHPGP----PGVLVTPPLPLKGPPGDPGF-PGRYGETGDVGPPGPPGLLGRPGEACAGMI 404
Query: 114 -DPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-PG----PGSR-------Q 160
P P + G+PG G R + + + G PG PG PGS
Sbjct: 405 GPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGN 464
Query: 161 PLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAV-------VGPSPPPPGRRLHSGSESR 213
P P G+ G KVG G G G +GN+ + +GP P PPG GS+
Sbjct: 465 PGPQGIKG--KVGPPG-----GRGPKGEKGNEGLCACEPGPMGP-PGPPGLPGRQGSKGD 516
Query: 214 LGARLPGFI 222
LG LPG++
Sbjct: 517 LG--LPGWL 523
Score = 37.0 bits (84), Expect = 0.015
Identities = 50/177 (28%), Positives = 59/177 (33%), Gaps = 45/177 (25%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEP 111
P P GAPGP G+S G + R R P K + P
Sbjct: 72 PQGPIGPLGAPGPIGLS---------------GEKGMRGDRGPPGAAGDKGD-----KGP 111
Query: 112 ARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----GGARAPGPG-----PGSRQP 161
P L + G PGP G R + RG GG A GPG PG +
Sbjct: 112 TGVPGFPGLDGIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGE 171
Query: 162 ---------LPAGLHGRR---KVGSAPDRHGLG--AGSAGARGNKAVVGPSPPPPGR 204
G+ G R + P G G AG G G +VGP P PGR
Sbjct: 172 KGNSVFILGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGP-PGQPGR 227
Score = 36.6 bits (83), Expect = 0.020
Identities = 42/108 (38%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRGGGA------RAPG-PG-PGSRQPLPA-GLHGRRK 171
P G+PGP GR+ R + G A R PG PG PG R P A GL G R
Sbjct: 1342 PGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRG 1401
Query: 172 VGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLP 219
S P G G G RG V G SP PPGR+ +G + G P
Sbjct: 1402 P-SGPGCKG-EPGLDGRRGVDGVPG-SPGPPGRKGDTGEDGYPGGPGP 1446
Score = 36.2 bits (82), Expect = 0.026
Identities = 55/197 (27%), Positives = 71/197 (36%), Gaps = 32/197 (16%)
Query: 52 PSTPWDTSGAPGPAGIS---PGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
P P +G GP G+ P R P + HP R G G + + + +
Sbjct: 617 PLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPD--GLKGQKGDTISCN----V 670
Query: 109 QEPARD--PSILRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPGPGPGSRQPLPA 164
P R P P G PGP+G + + G G A PGP PG R +
Sbjct: 671 TYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGP-PGFRGDMGD 729
Query: 165 GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSP----PPPGRRLHSGSESRLGAR--- 217
G K GS+P GS G G K + G PPG+R SG G R
Sbjct: 730 PGFGGEK-GSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDP 788
Query: 218 ----------LPGFIAL 224
+PGF+ L
Sbjct: 789 GCPGAEGPAGIPGFLGL 805
Score = 35.0 bits (79), Expect = 0.059
Identities = 37/120 (30%), Positives = 43/120 (35%), Gaps = 24/120 (20%)
Query: 120 LPRVVGVPGPRGRRH-RGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDR 178
LP G GP G + +G+ R + G R P PG P G HGR G A ++
Sbjct: 540 LPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGF--PGQPGSHGRD--GHAGEK 595
Query: 179 HGLGA---------------GSAGARGNKAVVGPS----PPPPGRRLHSGSESRLGARLP 219
G G G G VGP P PPG R H G G R P
Sbjct: 596 GDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGP 655
Score = 33.9 bits (76), Expect = 0.13
Identities = 53/192 (27%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLAD--HPLGRQARRAGRAGPEVEEVKRRARR 106
+G P P G PGP G PG+ S D P GR A G E +
Sbjct: 121 DGIPGHP----GPPGPRG-KPGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGEKGNS 175
Query: 107 L--------LQEPARDPSILRLPRVVGVPGPRGRR-HRGEQ----QQQREQRGGGARAPG 153
+ +Q DP + LP G GP G + GE + R G PG
Sbjct: 176 VFILGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPG 235
Query: 154 PGPGSRQPLPAGLHGRRKVGSA----PDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSG 209
G + P + + G P L G G +G +VG P PPGR+ SG
Sbjct: 236 VGVKGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGMVG-LPGPPGRKGESG 294
Query: 210 SESRLGARLPGF 221
++ +PGF
Sbjct: 295 IGAKGEKGIPGF 306
Score = 32.7 bits (73), Expect = 0.29
Identities = 47/180 (26%), Positives = 59/180 (32%), Gaps = 33/180 (18%)
Query: 60 GAPGPAGI-----SPGV-----------VRTAPSLAD----HPLGRQARRAGRAGPEVEE 99
G PGP GI SPG+ + A L D P+G + R P
Sbjct: 1160 GIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPG 1219
Query: 100 VKRRARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSR 159
+ R + P P G PGP G R + G PGP
Sbjct: 1220 ISPPGPRGKKGPPGPPGSS------GPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRG 1273
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLP 219
P P GL G + D G G G GP P PPG + G + + G + P
Sbjct: 1274 APGPPGLPG------SVDLLRGEPGDCGLPGPPGPPGP-PGPPGYKGFPGCDGKDGQKGP 1326
Score = 32.0 bits (71), Expect = 0.50
Identities = 54/193 (27%), Positives = 68/193 (35%), Gaps = 34/193 (17%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQ---ARRAGRAGPEVEEVKRRARRLL 108
P P +SG PGPAG + + P P G Q R P + L
Sbjct: 1231 PPGPPGSSGPPGPAGATGRAPKDIPD--PGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLR 1288
Query: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG-----------GGARAPG---- 153
EP D + P G PGP G + + Q+G G PG
Sbjct: 1289 GEPG-DCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGL 1347
Query: 154 PGPGSRQPLPAGLHGRR-------KVGSAPDRHGLGAGSAGARGNKAVVG----PSPPPP 202
PGP R+ P GL G R V P GL G+ G RG + +G P P
Sbjct: 1348 PGPPGRKG-PTGLPGPRGEPGPPADVDDCPRIPGL-PGAPGMRGPEGAMGLPGMRGPSGP 1405
Query: 203 GRRLHSGSESRLG 215
G + G + R G
Sbjct: 1406 GCKGEPGLDGRRG 1418
Score = 31.2 bits (69), Expect = 0.85
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 125 GVPGPRGRR-----------HRGEQQQQREQRGGGARAPGPGPGSRQPLP-AGLHGRRKV 172
G PG +GRR HRGE ++ + G P G R + GL G +
Sbjct: 993 GTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGE 1052
Query: 173 GSAPDRHGLGA--GSAGARGNKAVVGPSPPPPGRRLHSGS 210
+P G G+ G +GNK PPG + GS
Sbjct: 1053 PGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGS 1092
Score = 30.0 bits (66), Expect = 1.9
Identities = 40/150 (26%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 55 PWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA-GRAGPEVEEVKRRARRLLQEPAR 113
P+ G PGP G P R P P R A G G + E ++ L
Sbjct: 892 PFGDDGLPGPPG--PKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSGL----PG 945
Query: 114 DPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVG 173
D + +G PG G Q+ + G PG + P G+ GRR
Sbjct: 946 DRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTP-GMQGRRGEP 1004
Query: 174 SAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
G G G +G GP P PPG
Sbjct: 1005 GRYGPPGFHRGEPGEKGQPGPPGP-PGPPG 1033
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.7 bits (99), Expect = 3e-04
Identities = 57/188 (30%), Positives = 71/188 (37%), Gaps = 39/188 (20%)
Query: 52 PSTPWDTSGAPGPAGIS--------PGVVRTAPSLADHPLGRQARRAGRAGPEVEEVK-- 101
P P +GAPGP G PG +T P+ A P G G+AG + K
Sbjct: 98 PRGPPGAAGAPGPQGFQGPAGEPGEPG--QTGPAGARGPAGPP----GKAGEDGHPGKPG 151
Query: 102 RRARRLLQEPARDPSILRLPRVVGVPGPRG-RRHRGEQQQQREQRGGGAR----APGPGP 156
R R + P P G+PG +G R H G + + G + APG
Sbjct: 152 RPGERGVVGPQ---GARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG 208
Query: 157 GSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPP--------PPGRRLHS 208
Q GL G R AP G AGARG+ VGP P PPG
Sbjct: 209 TPGQTGARGLPGERGRVGAP-------GPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 261
Query: 209 GSESRLGA 216
G + +GA
Sbjct: 262 GPKGEIGA 269
Score = 42.4 bits (98), Expect = 4e-04
Identities = 49/178 (27%), Positives = 58/178 (32%), Gaps = 32/178 (17%)
Query: 60 GAPGPAGI--SPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSI 117
G PGP G+ +PG++ S + L A G GP A P
Sbjct: 859 GTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGP-------------LGIAGPPGA 905
Query: 118 LRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPD 177
P VG PG G + G R PG + P + G AP
Sbjct: 906 RGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNI-GPVGAAGAPG 964
Query: 178 RHGLGAGSAGARGNKAVVGPSPP--------------PPGRRLHSGSESRLGAR-LPG 220
HG G AG GN+ GPS P P G R G G R LPG
Sbjct: 965 PHG-PVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPG 1021
Score = 39.3 bits (90), Expect = 0.003
Identities = 54/165 (32%), Positives = 64/165 (38%), Gaps = 17/165 (10%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGPEVEEVKRRARRLLQEPARDPSI 117
GAPGPAG P P+G G GP+ E+ PA
Sbjct: 226 GAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPK-GEIGAVGNAGPAGPAGPRGE 284
Query: 118 LRLPRVVGVPGPRGRRHRGEQQQQREQRG--GGARAPG-PGP-GSRQPL-PAGLHGRRKV 172
+ LP + G GP G + G G A APG PGP G P+ AG G R +
Sbjct: 285 VGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGL 344
Query: 173 GSAPDRHGLGAGSAGARGNKAVVGPSPP--PPGRRLHSGSESRLG 215
P AGS G GNK G + P PPG SG E + G
Sbjct: 345 VGEPGP----AGSKGESGNKGEPGSAGPQGPPG---PSGEEGKRG 382
Score = 37.4 bits (85), Expect = 0.012
Identities = 50/165 (30%), Positives = 59/165 (35%), Gaps = 33/165 (20%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP G P R P P G GP + K D
Sbjct: 475 GRPGPIG--PAGARGEPGNIGFP--------GPKGPTGDPGKNG----------DKGHAG 514
Query: 120 LPRVVGVPGPRGRRH-RGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDR 178
L G PGP G +G Q Q G G + P PGP Q LP +VG +R
Sbjct: 515 LAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGP-PGPPGFQGLPGPSGPAGEVGKPGER 573
Query: 179 --HG-LG-AGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLP 219
HG G G AG RG + PPG +G +G+R P
Sbjct: 574 GLHGEFGLPGPAGPRGERG-------PPGESGAAGPTGPIGSRGP 611
Score = 36.6 bits (83), Expect = 0.020
Identities = 54/182 (29%), Positives = 65/182 (35%), Gaps = 41/182 (22%)
Query: 59 SGAPGPAGIS--PGVVRTA-------PSLADHPLGRQARRAGRAGPE--VEEVKRRARRL 107
+G PGP+GIS PG A P P+GR G GP E
Sbjct: 795 TGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTG-EVGAVGPPGFAGEKGPSGEAG 853
Query: 108 LQEPARDP---SILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGP-----GPGSR 159
P P +L P ++G+PG RG R G PGP PG+R
Sbjct: 854 TAGPPGTPGPQGLLGAPGILGLPGSRGER-------GLPGVAGAVGEPGPLGIAGPPGAR 906
Query: 160 QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGP-----SPPPPGRRLHSGSESRL 214
P G G V AP G AG GN GP P G R + G+ +
Sbjct: 907 G--PPGAVGSPGVNGAP-------GEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPV 957
Query: 215 GA 216
GA
Sbjct: 958 GA 959
Score = 36.2 bits (82), Expect = 0.026
Identities = 48/176 (27%), Positives = 60/176 (34%), Gaps = 40/176 (22%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPARDPSILR 119
G PGP GI PG V A + L + AG G + EP
Sbjct: 322 GLPGPRGI-PGPVGAAGATGARGLVGEPGPAGSKGESGNK---------GEP-------- 363
Query: 120 LPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPA-----GLHGRRKVGS 174
G GP+G ++ +R G A PGP + P G GR V
Sbjct: 364 -----GSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMG 418
Query: 175 APDRHGLGA--------GSAGARGNKAVVGPS--PPPPGRRLHSGSESRLGARLPG 220
P G G AG G ++GP P PG +G E +G LPG
Sbjct: 419 PPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVG--LPG 472
Score = 35.8 bits (81), Expect = 0.034
Identities = 58/212 (27%), Positives = 71/212 (33%), Gaps = 44/212 (20%)
Query: 49 EGAPSTPWDTSGAPGPAGISPG---VVRTAPSLADHPLGRQARRA--GRAGPE------- 96
+GA P GAPGPAG + P+ P G R G AGP
Sbjct: 672 DGARGAP-GAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
Query: 97 -VEEVKRRARRLLQEPARDPSILRLPRVVGV---------PGPRGRRHRGEQQQQREQRG 146
+ + R + P + ++ VG PGP G R G G
Sbjct: 731 AAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPG 790
Query: 147 GGARAPGPGPGS-----RQPLPAGLHGRRKVGSAPDRHGLG-AGSAGARGNKAVVGPSPP 200
R PGP P PAG G R G D+ +G G GA G G P
Sbjct: 791 AAGRTGPPGPSGISGPPGPPGPAGKEGLR--GPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848
Query: 201 --------PPGRRLHSGSESRLGARLPGFIAL 224
PPG G + LGA PG + L
Sbjct: 849 SGEAGTAGPPGT---PGPQGLLGA--PGILGL 875
Score = 35.8 bits (81), Expect = 0.034
Identities = 48/158 (30%), Positives = 58/158 (36%), Gaps = 32/158 (20%)
Query: 55 PWDTSGAPGPAG-ISPGVVR-----TAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
P +GAPGP G + P T PS P+G AG GP + R
Sbjct: 956 PVGAAGAPGPHGPVGPAGKHGNRGETGPS---GPVGP----AGAVGPRGPSGPQGIRGDK 1008
Query: 109 QEPARD-----PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLP 163
EP P + + G+PG G H G+Q G R P GP P
Sbjct: 1009 GEPGEKGPRGLPGLKGHNGLQGLPGIAG--HHGDQGAPGSVGPAGPRGPA-GPSG----P 1061
Query: 164 AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP 201
AG GR H G AG RG + GP+ PP
Sbjct: 1062 AGKDGRTG-------HPGTVGPAGIRGPQGHQGPAGPP 1092
Score = 35.4 bits (80), Expect = 0.045
Identities = 51/192 (26%), Positives = 66/192 (34%), Gaps = 46/192 (23%)
Query: 49 EGAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLL 108
E P+ P G PGP G+ A +G G GP
Sbjct: 55 EDGPTGPPGPPGPPGPPGLGGNF---AAQYDGKGVGLGPGPMGLMGP------------- 98
Query: 109 QEPARDPSILRLPRVVGVPGPRG-RRHRGEQQQQREQRGGGARAPGPGPGSR-------- 159
R P P G PGP+G + GE + + GAR P PG
Sbjct: 99 ----RGP-----PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGK 149
Query: 160 --QPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVG----PSPP----PPGRRLHSG 209
+P G+ G + P GL G G RG+ + G P P PG +G
Sbjct: 150 PGRPGERGVVGPQGARGFPGTPGL-PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG 208
Query: 210 SESRLGAR-LPG 220
+ + GAR LPG
Sbjct: 209 TPGQTGARGLPG 220
Score = 34.7 bits (78), Expect = 0.077
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 125 GVPGPR-------GRRHRGEQQQQREQRGGGARAPGPGPGS-RQPLPAGLHGRRKVGSAP 176
G+PG R G+ +GE + E G PG+ P PAG G R A
Sbjct: 640 GLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAA 699
Query: 177 DRHGLGAGSAGARGNKAVVGPSPP-----PPGRRLHSGSESRLGARLP 219
G AG G+ G + VGP+ P P G G++ GA+ P
Sbjct: 700 GPAG-PAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGP 746
Score = 33.1 bits (74), Expect = 0.22
Identities = 65/216 (30%), Positives = 74/216 (34%), Gaps = 40/216 (18%)
Query: 50 GAPSTPWDT--SGAPGPAGISPGVVRTA--PSLADHP-----LGRQARRAGRAGPEVEEV 100
G P P T +GA GPAG PG P P +G Q R P +
Sbjct: 118 GEPGEPGQTGPAGARGPAG-PPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGF 176
Query: 101 KR-RARRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGP--- 156
K R L P P V G PG G Q R G R PGP
Sbjct: 177 KGIRGHNGLDGLKGQPGA---PGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGA 233
Query: 157 ----GSRQPL----PAGLHGRRKVGSAPDRHG-LGA-------GSAGARGN---KAVVGP 197
GS P+ P G G AP G +GA G AG RG + GP
Sbjct: 234 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGP 293
Query: 198 SPPP--PGRRLHSGSESRLGARLPGFIALLDLCDPR 231
PP PG +G++ G LPG L PR
Sbjct: 294 VGPPGNPGANGLTGAKGAAG--LPGVAGAPGLPGPR 327
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 42.7 bits (99), Expect = 3e-04
Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 13/172 (7%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G+P P G PGP GI PG+ S+ L G GP + +
Sbjct: 135 GSPGFP-GLQGPPGPPGI-PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 110 E--PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--SRQPLPAG 165
P P ++ P G+PGP+G Q + E+ G + P PG S Q P
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 166 LHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR 217
+ ++ P G G G + GP PP G + G + G R
Sbjct: 253 VEFQKGDQGLP-------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKR 297
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/181 (29%), Positives = 69/181 (38%), Gaps = 23/181 (12%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGP--EVEEVKRRARRL 107
P P G PGP G+ PG P G + + G GP ++ E KR
Sbjct: 196 PPGPPGLMGPPGPPGL-PGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVE 254
Query: 108 LQEPARD-PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARA-PGPGPGSRQPLPAG 165
Q+ + P P G+ GP G GE+ ++ EQ G R PG + QP G
Sbjct: 255 FQKGDQGLPGDRGPPGPPGIRGPPG-PPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPG 313
Query: 166 LHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP------PGRRLHSGSESRLGARLP 219
L G P G G +G K GP PP PG + G + +G LP
Sbjct: 314 LPGDPGYPGEP-------GRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIG--LP 364
Query: 220 G 220
G
Sbjct: 365 G 365
Score = 37.4 bits (85), Expect = 0.012
Identities = 56/163 (34%), Positives = 65/163 (39%), Gaps = 52/163 (31%)
Query: 50 GAPSTPWDTSGAPGPAGIS--PGVVRTAPSLADH--PLGRQARRAGRAGPEVEEVKRRAR 105
G P TP G PGP GIS PG P L P+G G+ GP E+ K
Sbjct: 1122 GFPGTP----GPPGPKGISGPPG----NPGLPGEPGPVG-GGGHPGQPGPPGEKGK---- 1168
Query: 106 RLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAG 165
P +D G+PGP G+ +GE Q G PGP PG LP G
Sbjct: 1169 -----PGQD----------GIPGPAGQ--KGEPGQP------GFGNPGP-PG----LP-G 1199
Query: 166 LHGRRKVGSAPDRHGLGA-----GSAGARGNKAVVGPSPPPPG 203
L G++ G P G G G G V GP P PPG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP-PGPPG 1241
Score = 33.9 bits (76), Expect = 0.13
Identities = 48/161 (29%), Positives = 57/161 (35%), Gaps = 40/161 (24%)
Query: 50 GAPSTPW--DTSGAPGPAGIS--PGVVRT-APSLADHPLGRQARRAGRAGPEVEEVKRRA 104
G P P SG PG AG PG++ P P G+ G AGP
Sbjct: 1333 GVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGP--------- 1383
Query: 105 RRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPA 164
P I P + G+PGP+G Q G P PG R LP
Sbjct: 1384 ----------PGIPGQPGLKGLPGPQG-----------PQGLPGPTGP-PGDPGRNGLPG 1421
Query: 165 --GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
G GR+ P + G G G G + GP P PPG
Sbjct: 1422 FDGAGGRKGDPGLPGQPGT-RGLDGPPGPDGLQGP-PGPPG 1460
Score = 32.0 bits (71), Expect = 0.50
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGS 174
P + P G PGPRG+ +G+ G R P PG P GL G
Sbjct: 59 PGLPGFPGPEGPPGPRGQ--KGDDGIPGPPGPKGIRGPPGLPGF--PGTPGLPGMPGHDG 114
Query: 175 APDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR-LPGFIALLDLCDPR 231
AP G+ G G +G + G SP PG + G G + PG I + L P+
Sbjct: 115 APGPQGI-PGCNGTKGERGFPG-SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPK 170
Score = 31.2 bits (69), Expect = 0.85
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P P + +P G PGP G G ++ GA P PGS GL G
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGS-----PGLPG-- 884
Query: 171 KVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
K G+ +G G +G ++GP P PPG
Sbjct: 885 KAGA--------SGFPGTKGEMGMMGP-PGPPG 908
Score = 31.2 bits (69), Expect = 0.85
Identities = 42/152 (27%), Positives = 51/152 (33%), Gaps = 28/152 (18%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRA-----GRAGPEVEEVKRRARRLLQEPAR- 113
G PGP G SPG P P G R G GPE + E
Sbjct: 1235 GPPGPPG-SPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNP 1293
Query: 114 -DPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-PGSRQPLPAGLHGRRK 171
P + LP + G GP G + + +G PG PG + P
Sbjct: 1294 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGP---------- 1343
Query: 172 VGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
P GSAG G ++GP P PPG
Sbjct: 1344 -SGVP-------GSAGPEGEPGLIGP-PGPPG 1366
Score = 30.8 bits (68), Expect = 1.1
Identities = 51/178 (28%), Positives = 59/178 (33%), Gaps = 44/178 (24%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P G PGP G PG T P P G R P
Sbjct: 641 GNPGQP----GIPGPKG-DPGQTITQPGKPGLP-GNPGRDGDVGLPG------------- 681
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGR 169
DP + P + G+PG +G E G PGP PG + P G+ G
Sbjct: 682 ----DPGLPGQPGLPGIPGSKG-----------EPGIPGIGLPGP-PGPK-GFP-GIPGP 723
Query: 170 RKVGSAPDRHGLGA-----GSAGARGNKAVVGPSPP-PPGRRLHSGSESRLGAR-LPG 220
P R GL G G +G P PP PPG G+ G R PG
Sbjct: 724 PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPG 781
Score = 30.8 bits (68), Expect = 1.1
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-PGPGSRQPLPA----- 164
P +P ++ P G+PGP G Q G A PG PG + LP
Sbjct: 1352 PEGEPGLIGPPGPPGLPGPSG---------QSIIIKGDAGPPGIPGQPGLKGLPGPQGPQ 1402
Query: 165 GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR 205
GL G P R+GL G GA G K G P PG R
Sbjct: 1403 GLPGPTGPPGDPGRNGL-PGFDGAGGRKGDPG-LPGQPGTR 1441
Score = 30.4 bits (67), Expect = 1.4
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-PGPGSRQ--PLPA 164
L P +P P V G PGP G G + + G PG PGP Q P P
Sbjct: 1218 LPGPKGEPGFHGFPGVQGPPGPPG--SPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPE 1275
Query: 165 GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP-----PGRRLHSGSESRLG-ARL 218
G G G G G G G + G PP PGR +G + G +
Sbjct: 1276 GPPGLPGNGGIKGEKG-NPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGV 1334
Query: 219 PGF 221
PGF
Sbjct: 1335 PGF 1337
Score = 30.0 bits (66), Expect = 1.9
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLG 182
V+G PGP G GE+ Q+ ++ G PGP QP GL G
Sbjct: 392 VMGPPGPPG--FPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPG-------------P 436
Query: 183 AGSAGAR--GNKAVVGPSPP-PPGRRLHSGSESRLGAR 217
G AG + + P PP PPG G + G +
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVK 474
Score = 28.5 bits (62), Expect = 5.5
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRG-----------GGARAPG-PG----PGSRQPLPA 164
P + G+PGP G Q+ ++ Q G G APG PG PG P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPG 555
Query: 165 GLHGRRKVGS--APDRHGLGAGSAGARGNKAVVGPSPPPPG 203
+ ++GS AP GL G+ G G + GP P G
Sbjct: 556 MKGDKGELGSPGAPGLPGL-PGTPGQDGLPGLPGPKGEPGG 595
Score = 27.7 bits (60), Expect = 9.4
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA- 183
G+PGP G R G PGP PG P P G G G P GL
Sbjct: 719 GIPGPPGA-------PGTPGRIGLEGPPGP-PGF--PGPKGEPGFALPGP-PGPPGLPGF 767
Query: 184 -GSAGARGNKAVVGPSPPPPGR 204
G+ G +G++ GP P PPGR
Sbjct: 768 KGALGPKGDRGFPGP-PGPPGR 788
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 42.7 bits (99), Expect = 3e-04
Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 13/172 (7%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G+P P G PGP GI PG+ S+ L G GP + +
Sbjct: 135 GSPGFP-GLQGPPGPPGI-PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 110 E--PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--SRQPLPAG 165
P P ++ P G+PGP+G Q + E+ G + P PG S Q P
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 166 LHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR 217
+ ++ P G G G + GP PP G + G + G R
Sbjct: 253 VEFQKGDQGLP-------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKR 297
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/181 (29%), Positives = 69/181 (38%), Gaps = 23/181 (12%)
Query: 52 PSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRA--GRAGP--EVEEVKRRARRL 107
P P G PGP G+ PG P G + + G GP ++ E KR
Sbjct: 196 PPGPPGLMGPPGPPGL-PGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVE 254
Query: 108 LQEPARD-PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARA-PGPGPGSRQPLPAG 165
Q+ + P P G+ GP G GE+ ++ EQ G R PG + QP G
Sbjct: 255 FQKGDQGLPGDRGPPGPPGIRGPPG-PPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPG 313
Query: 166 LHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPP------PGRRLHSGSESRLGARLP 219
L G P G G +G K GP PP PG + G + +G LP
Sbjct: 314 LPGDPGYPGEP-------GRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIG--LP 364
Query: 220 G 220
G
Sbjct: 365 G 365
Score = 37.4 bits (85), Expect = 0.012
Identities = 56/163 (34%), Positives = 65/163 (39%), Gaps = 52/163 (31%)
Query: 50 GAPSTPWDTSGAPGPAGIS--PGVVRTAPSLADH--PLGRQARRAGRAGPEVEEVKRRAR 105
G P TP G PGP GIS PG P L P+G G+ GP E+ K
Sbjct: 1122 GFPGTP----GPPGPKGISGPPG----NPGLPGEPGPVG-GGGHPGQPGPPGEKGK---- 1168
Query: 106 RLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAG 165
P +D G+PGP G+ +GE Q G PGP PG LP G
Sbjct: 1169 -----PGQD----------GIPGPAGQ--KGEPGQP------GFGNPGP-PG----LP-G 1199
Query: 166 LHGRRKVGSAPDRHGLGA-----GSAGARGNKAVVGPSPPPPG 203
L G++ G P G G G G V GP P PPG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP-PGPPG 1241
Score = 33.9 bits (76), Expect = 0.13
Identities = 48/161 (29%), Positives = 57/161 (35%), Gaps = 40/161 (24%)
Query: 50 GAPSTPW--DTSGAPGPAGIS--PGVVRT-APSLADHPLGRQARRAGRAGPEVEEVKRRA 104
G P P SG PG AG PG++ P P G+ G AGP
Sbjct: 1327 GVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGP--------- 1377
Query: 105 RRLLQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPA 164
P I P + G+PGP+G Q G P PG R LP
Sbjct: 1378 ----------PGIPGQPGLKGLPGPQG-----------PQGLPGPTGP-PGDPGRNGLPG 1415
Query: 165 --GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
G GR+ P + G G G G + GP P PPG
Sbjct: 1416 FDGAGGRKGDPGLPGQPGT-RGLDGPPGPDGLQGP-PGPPG 1454
Score = 33.1 bits (74), Expect = 0.22
Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 24/147 (16%)
Query: 60 GAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQEPAR--DPSI 117
G PGP G SPG P P G R G GPE + E P +
Sbjct: 1235 GPPGPPG-SPGPALEGPKGNPGPQGPPGR-PGLPGPEGPPGLPGNGGIKGEKGNPGQPGL 1292
Query: 118 LRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPG-PGSRQPLPAGLHGRRKVGSAP 176
LP + G GP G + + +G PG PG + P P
Sbjct: 1293 PGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGP-----------SGVP 1341
Query: 177 DRHGLGAGSAGARGNKAVVGPSPPPPG 203
GSAG G ++GP P PPG
Sbjct: 1342 -------GSAGPEGEPGLIGP-PGPPG 1360
Score = 32.0 bits (71), Expect = 0.50
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 115 PSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGS 174
P + P G PGPRG+ +G+ G R P PG P GL G
Sbjct: 59 PGLPGFPGPEGPPGPRGQ--KGDDGIPGPPGPKGIRGPPGLPGF--PGTPGLPGMPGHDG 114
Query: 175 APDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGAR-LPGFIALLDLCDPR 231
AP G+ G G +G + G SP PG + G G + PG I + L P+
Sbjct: 115 APGPQGI-PGCNGTKGERGFPG-SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPK 170
Score = 31.2 bits (69), Expect = 0.85
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRR 170
P P + +P G PGP G G ++ GA P PGS GL G
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGS-----PGLPG-- 884
Query: 171 KVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPG 203
K G+ +G G +G ++GP P PPG
Sbjct: 885 KAGA--------SGFPGTKGEMGMMGP-PGPPG 908
Score = 30.8 bits (68), Expect = 1.1
Identities = 51/178 (28%), Positives = 59/178 (33%), Gaps = 44/178 (24%)
Query: 50 GAPSTPWDTSGAPGPAGISPGVVRTAPSLADHPLGRQARRAGRAGPEVEEVKRRARRLLQ 109
G P P G PGP G PG T P P G R P
Sbjct: 641 GNPGQP----GIPGPKG-DPGQTITQPGKPGLP-GNPGRDGDVGLPG------------- 681
Query: 110 EPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGR 169
DP + P + G+PG +G E G PGP PG + P G+ G
Sbjct: 682 ----DPGLPGQPGLPGIPGSKG-----------EPGIPGIGLPGP-PGPK-GFP-GIPGP 723
Query: 170 RKVGSAPDRHGLGA-----GSAGARGNKAVVGPSPP-PPGRRLHSGSESRLGAR-LPG 220
P R GL G G +G P PP PPG G+ G R PG
Sbjct: 724 PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPG 781
Score = 30.8 bits (68), Expect = 1.1
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 111 PARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG-PGPGSRQPLPA----- 164
P +P ++ P G+PGP G Q G A PG PG + LP
Sbjct: 1346 PEGEPGLIGPPGPPGLPGPSG---------QSIIIKGDAGPPGIPGQPGLKGLPGPQGPQ 1396
Query: 165 GLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR 205
GL G P R+GL G GA G K G P PG R
Sbjct: 1397 GLPGPTGPPGDPGRNGL-PGFDGAGGRKGDPG-LPGQPGTR 1435
Score = 30.0 bits (66), Expect = 1.9
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 123 VVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLG 182
V+G PGP G GE+ Q+ ++ G PGP QP GL G
Sbjct: 392 VMGPPGPPG--FPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPG-------------P 436
Query: 183 AGSAGAR--GNKAVVGPSPP-PPGRRLHSGSESRLGAR 217
G AG + + P PP PPG G + G +
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVK 474
Score = 30.0 bits (66), Expect = 1.9
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 108 LQEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPG----PGPGSRQPLP 163
L P +P P V G PGP G G + + G PG PGP LP
Sbjct: 1218 LPGPKGEPGFHGFPGVQGPPGPPG--SPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLP 1275
Query: 164 --AGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGF 221
G+ G + P GL G G +G + G +P PG G G +PGF
Sbjct: 1276 GNGGIKGEKGNPGQPGLPGL-PGLKGDQGPPGLQG-NPGRPGLNGMKGDPGLPG--VPGF 1331
Score = 28.5 bits (62), Expect = 5.5
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 121 PRVVGVPGPRGRRHRGEQQQQREQRG-----------GGARAPG-PG----PGSRQPLPA 164
P + G+PGP G Q+ ++ Q G G APG PG PG P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPG 555
Query: 165 GLHGRRKVGS--APDRHGLGAGSAGARGNKAVVGPSPPPPG 203
+ ++GS AP GL G+ G G + GP P G
Sbjct: 556 MKGDKGELGSPGAPGLPGL-PGTPGQDGLPGLPGPKGEPGG 595
Score = 27.7 bits (60), Expect = 9.4
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGA- 183
G+PGP G R G PGP PG P P G G G P GL
Sbjct: 719 GIPGPPGA-------PGTPGRIGLEGPPGP-PGF--PGPKGEPGFALPGP-PGPPGLPGF 767
Query: 184 -GSAGARGNKAVVGPSPPPPGR 204
G+ G +G++ GP P PPGR
Sbjct: 768 KGALGPKGDRGFPGP-PGPPGR 788
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,162,960
Number of Sequences: 37866
Number of extensions: 892891
Number of successful extensions: 8334
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 886
Number of HSP's that attempted gapping in prelim test: 6279
Number of HSP's gapped (non-prelim): 2417
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.