Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239746425
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo
sapiens]
(67 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo ... 138 1e-33
gi|239751942 PREDICTED: hypothetical protein [Homo sapiens] 138 1e-33
gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo ... 138 1e-33
gi|46411159 TEA domain family member 4 isoform 3 [Homo sapiens] 38 0.002
gi|46411156 TEA domain family member 4 isoform 2 [Homo sapiens] 38 0.002
gi|46411152 TEA domain family member 4 isoform 1 [Homo sapiens] 38 0.002
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 35 0.010
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 35 0.010
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 33 0.049
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo ... 32 0.083
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 32 0.083
gi|239755107 PREDICTED: hypothetical protein XP_002346216 [Homo ... 32 0.11
gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1 ... 32 0.11
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 32 0.11
gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo ... 32 0.11
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 32 0.11
gi|122937321 UNC homeobox [Homo sapiens] 32 0.11
gi|5803177 basic beta 2 syntrophin [Homo sapiens] 32 0.11
gi|62988361 absent in melanoma 1 [Homo sapiens] 32 0.14
gi|190341107 N-acetyltransferase 12 [Homo sapiens] 32 0.14
gi|120587019 zinc finger protein 318 [Homo sapiens] 32 0.14
gi|187830855 tumor protein p53 isoform b [Homo sapiens] 31 0.18
gi|187830823 tumor protein p53 isoform c [Homo sapiens] 31 0.18
gi|187830777 tumor protein p53 isoform a [Homo sapiens] 31 0.18
gi|120407068 tumor protein p53 isoform a [Homo sapiens] 31 0.18
gi|39812378 RAN binding protein 9 [Homo sapiens] 31 0.18
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 31 0.18
gi|4504713 insulinoma-associated 1 [Homo sapiens] 31 0.18
>gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo
sapiens]
Length = 67
Score = 138 bits (347), Expect = 1e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE
Sbjct: 1 MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
Query: 61 GRLGGRQ 67
GRLGGRQ
Sbjct: 61 GRLGGRQ 67
>gi|239751942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 138 bits (347), Expect = 1e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE
Sbjct: 1 MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
Query: 61 GRLGGRQ 67
GRLGGRQ
Sbjct: 61 GRLGGRQ 67
>gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo
sapiens]
Length = 67
Score = 138 bits (347), Expect = 1e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE
Sbjct: 1 MCFFSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
Query: 61 GRLGGRQ 67
GRLGGRQ
Sbjct: 61 GRLGGRQ 67
>gi|46411159 TEA domain family member 4 isoform 3 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 FFSRALGGTAG-DEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEA 58
F+ AL G AG D S PPL L PA P+P+ +A +PPW+G +
Sbjct: 33 FWQGALPGQAGTSHDVKPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRS 89
>gi|46411156 TEA domain family member 4 isoform 2 [Homo sapiens]
Length = 391
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 FFSRALGGTAG-DEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEA 58
F+ AL G AG D S PPL L PA P+P+ +A +PPW+G +
Sbjct: 119 FWQGALPGQAGTSHDVKPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRS 175
>gi|46411152 TEA domain family member 4 isoform 1 [Homo sapiens]
Length = 434
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 FFSRALGGTAG-DEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEA 58
F+ AL G AG D S PPL L PA P+P+ +A +PPW+G +
Sbjct: 162 FWQGALPGQAGTSHDVKPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRS 218
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 9 GGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSP 44
GG+ D +G A RRR+ P A R+ ARP AP+P
Sbjct: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAP 399
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 9 GGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSP 44
GG+ D +G A RRR+ P A R+ ARP AP+P
Sbjct: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAP 399
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 5 SRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLG 64
S L G G G R+RF P + AR P+P+ A P RG A RL
Sbjct: 248 SSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGAR-TLPTPSRARPGKPAPRGSAPPARLR 306
Query: 65 G 65
G
Sbjct: 307 G 307
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 9 GGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEA 58
GG G GS+S+P + AAA AA + AAAA A P G A
Sbjct: 145 GGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGAPSVGAA 194
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 9 GGTAGDE---DSGSASAPRRRFGPPL-ALRAAARPAAPSPAAAAAASPPWRGEAAEGRLG 64
G AG+ SG S +R GP + R R P PAA SPP RG AA GR G
Sbjct: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAP---SPPARGAAAWGRSG 65
Query: 65 G 65
G
Sbjct: 66 G 66
>gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo
sapiens]
Length = 72
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 3 GAVEGGRLRAGTPPASRLLRR------RAGQAWSPPWEGPAGDGEMEGR 45
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 32.3 bits (72), Expect = 0.083
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 29 PPLALRAAARPAAPSPAAAAAASPPWRGEAAEG 61
PP + AAA AP AAAAA +PP G A G
Sbjct: 136 PPAPVAAAAPARAPRAAAAAATAPPSPGPAQPG 168
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 10 GTAGDEDSGSASAPRRRFGPPLALRAAARPAAP--SPAAAAAASPP 53
G+ ++ PRR PP A P AP +PAAAAAA+PP
Sbjct: 89 GSISYRNAARVQPPRRGATPP------APPRAPRGAPAAAAAAAPP 128
>gi|239755107 PREDICTED: hypothetical protein XP_002346216 [Homo
sapiens]
Length = 72
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 3 GAVEGGRLRAGTPPASRLLHR------RAGQAWSPPWEGPAGDGEMEGR 45
>gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 237
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 6 RALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEA 58
R G TA + A+A PLA R AA +P P AA+ P W A
Sbjct: 153 RYFGRTAVEVGGPMAAANGASVRMPLASRRAAAAPSPGPCPPAASGPSWEAPA 205
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 21 SAPRRRFGP---PLALRAAARPAAPSPAAAAAASPPW 54
+A R R G PL +A RPA PSPAAA +A W
Sbjct: 834 AASRARKGESRRPLPANSAGRPALPSPAAARSARGSW 870
>gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo
sapiens]
Length = 72
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 3 GAVEGGRLRAGTPPASRLLHR------RAGQAWSPPWEGPAGDGEMEGR 45
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 4 FSRALGGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAE 60
+ R LGG G+ED+G P R GPP A ++ P +P +++++S G+ E
Sbjct: 257 WERLLGGLGGEEDTGRPWGPSR--GPPQAQGTSSGPNC-APGSSSSSSSDEAGDPNE 310
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/44 (40%), Positives = 19/44 (43%)
Query: 10 GTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPP 53
GTAG A +PR PP A P P AAA SPP
Sbjct: 480 GTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGPSPP 523
>gi|5803177 basic beta 2 syntrophin [Homo sapiens]
Length = 540
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 9 GGTAGDEDSGSASAPRRRFGPPLALRAAARPAAP-SPAAAAAASPPWR 55
GG AGD GS P R GPP + PA P PA A ASPP R
Sbjct: 76 GGGAGDSLPGS---PSRGLGPP------SPPAPPRGPAGEAGASPPVR 114
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 20 ASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWR 55
AS+P +R G AL A P A P A A SPP R
Sbjct: 101 ASSPTKRKGRSRALEAVPAPPASGPRAPAKESPPKR 136
>gi|190341107 N-acetyltransferase 12 [Homo sapiens]
Length = 362
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 29 PPLALRAAARPAAPSPAAAAAASPP--WRGEAAEG 61
PP +L + AR A PSP AAAAS P R AEG
Sbjct: 138 PPHSLSSNARTAVPSPVEAAAASDPAAARNGLAEG 172
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 9 GGTAGDEDSGSASAPRRRFGPP------LALRAAARPAAPSPAAAAAASP-PWRG 56
GG SGS+S P RR PP + A RP +PS ASP P RG
Sbjct: 21 GGPRSGRSSGSSSGPARRSSPPPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRG 75
>gi|187830855 tumor protein p53 isoform b [Homo sapiens]
Length = 341
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 15 EDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPW 54
ED G APR P A A PAAP+PAA A A P W
Sbjct: 56 EDPGPDEAPRM---PEAAPPVAPAPAAPTPAAPAPA-PSW 91
>gi|187830823 tumor protein p53 isoform c [Homo sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 15 EDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPW 54
ED G APR P A A PAAP+PAA A A P W
Sbjct: 56 EDPGPDEAPRM---PEAAPPVAPAPAAPTPAAPAPA-PSW 91
>gi|187830777 tumor protein p53 isoform a [Homo sapiens]
Length = 393
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 15 EDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPW 54
ED G APR P A A PAAP+PAA A A P W
Sbjct: 56 EDPGPDEAPRM---PEAAPPVAPAPAAPTPAAPAPA-PSW 91
>gi|120407068 tumor protein p53 isoform a [Homo sapiens]
Length = 393
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 15 EDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPW 54
ED G APR P A A PAAP+PAA A A P W
Sbjct: 56 EDPGPDEAPRM---PEAAPPVAPAPAAPTPAAPAPA-PSW 91
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 9 GGTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSP-------AAAAAASPP 53
GG AG E G+A+A PP A A P P P AAA A+ PP
Sbjct: 52 GGGAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPP 103
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 28 GPPLALRAAARPAAPSPAAAA--AASPP 53
GPP A AA PAA P+AA+ AASPP
Sbjct: 111 GPPAAAPAAVCPAAADPSAASLCAASPP 138
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 28 GPPLALRAAARPAAPSPAAAA--AASP 52
GPP A AA PAA P+AA+ AASP
Sbjct: 155 GPPAAALAAVYPAAADPSAASLCAASP 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 10 GTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAAS 51
G AG + +A + P A AAA P A +PAAAA A+
Sbjct: 202 GAAGPSAASLCAASQPAAVPAAASPAAAAPLAVNPAAAARAA 243
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 12 AGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAAS 51
A D + S A P A+ AA RP A P AAA A+
Sbjct: 124 AADPSAASLCAASPPAAVPAAVPAAVRPPAAGPPAAALAA 163
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 10 GTAGDEDSGSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEG 61
GTA + +A P GPPL AA RP P AA PP + A G
Sbjct: 170 GTAFSAGAEAARGPGP--GPPLPPAAALRPPGKRPPPPTAAEPPAKAVKAPG 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,246,028
Number of Sequences: 37866
Number of extensions: 164511
Number of successful extensions: 3800
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 3030
Number of HSP's gapped (non-prelim): 869
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.