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Search of human proteins with 239745346
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745346 PREDICTED: hypothetical protein XP_002343442,
partial [Homo sapiens]
(56 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745346 PREDICTED: hypothetical protein XP_002343442, parti... 112 5e-26
gi|239756412 PREDICTED: similar to dynamin 1, partial [Homo sapi... 110 2e-25
gi|239756410 PREDICTED: similar to dynamin 1, partial [Homo sapi... 110 2e-25
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 49 1e-06
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 49 1e-06
gi|42544243 dynamin 3 isoform a [Homo sapiens] 37 0.003
gi|209915561 dynamin 3 isoform b [Homo sapiens] 37 0.003
gi|239756350 PREDICTED: UPF0621 protein C-like [Homo sapiens] 37 0.005
gi|239750876 PREDICTED: UPF0621 protein C-like [Homo sapiens] 37 0.005
gi|169208224 PREDICTED: UPF0621 protein C-like [Homo sapiens] 37 0.005
gi|56549125 dynamin 2 isoform 4 [Homo sapiens] 34 0.029
gi|56549123 dynamin 2 isoform 2 [Homo sapiens] 34 0.029
gi|56549121 dynamin 2 isoform 1 [Homo sapiens] 34 0.029
gi|56549119 dynamin 2 isoform 3 [Homo sapiens] 34 0.029
gi|239787787 kin of IRRE like 3 isoform 2 [Homo sapiens] 30 0.55
gi|26006461 kin of IRRE like 3 isoform 1 [Homo sapiens] 30 0.55
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 27 4.7
gi|113425405 PREDICTED: similar to dynamin 1 [Homo sapiens] 26 8.0
gi|239745286 PREDICTED: hypothetical protein XP_002343417 [Homo ... 26 8.0
gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo ... 26 8.0
gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo ... 26 8.0
>gi|239745346 PREDICTED: hypothetical protein XP_002343442,
partial [Homo sapiens]
Length = 56
Score = 112 bits (281), Expect = 5e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG 56
RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG
Sbjct: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG 56
>gi|239756412 PREDICTED: similar to dynamin 1, partial [Homo
sapiens]
Length = 350
Score = 110 bits (276), Expect = 2e-25
Identities = 55/56 (98%), Positives = 55/56 (98%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG 56
RQTKEFIFSELL NLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG
Sbjct: 1 RQTKEFIFSELLCNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG 56
Score = 83.6 bits (205), Expect = 3e-17
Identities = 46/58 (79%), Positives = 50/58 (86%), Gaps = 2/58 (3%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQ--GVHLLRAAVQPALAWEREDTRG 56
RQTKEFIFSELLSNL+SR N +TLVE SAEQA + + LLRAAVQPALAWEREDTRG
Sbjct: 144 RQTKEFIFSELLSNLYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALAWEREDTRG 201
Score = 80.9 bits (198), Expect = 2e-16
Identities = 45/58 (77%), Positives = 49/58 (84%), Gaps = 2/58 (3%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQ--GVHLLRAAVQPALAWEREDTRG 56
RQTKEFIFSELLSNL+SR N +TLVE SAEQA + + LLRAAVQPALAWE EDTRG
Sbjct: 289 RQTKEFIFSELLSNLYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALAWEPEDTRG 346
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQ 34
RQTKEFIFSELLSNLHSRGNEKTL+E SAEQA +
Sbjct: 237 RQTKEFIFSELLSNLHSRGNEKTLMEESAEQAQR 270
Score = 57.0 bits (136), Expect = 3e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQ 34
RQTKEFIFSELLS LH RGNEKTL+E SAEQA +
Sbjct: 92 RQTKEFIFSELLSKLHLRGNEKTLMEESAEQAQR 125
>gi|239756410 PREDICTED: similar to dynamin 1, partial [Homo
sapiens]
Length = 191
Score = 110 bits (275), Expect = 2e-25
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG 56
RQTKEFIFSELLSNL+SRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG
Sbjct: 1 RQTKEFIFSELLSNLYSRGNEKTLVEASAEQADQGVHLLRAAVQPALAWEREDTRG 56
Score = 87.0 bits (214), Expect = 3e-18
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 1 RQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQPALA 48
RQ KEFIFSELLSNL+SRGNEKTL+E SAEQADQGVHLLRAAVQPALA
Sbjct: 144 RQNKEFIFSELLSNLYSRGNEKTLLEESAEQADQGVHLLRAAVQPALA 191
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 3 TKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
TKEFIFSELL+NL+S G++ TL+E SAEQA + +LR
Sbjct: 693 TKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDEMLR 730
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 3 TKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
TKEFIFSELL+NL+S G++ TL+E SAEQA + +LR
Sbjct: 693 TKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDEMLR 730
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 4 KEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
K+FI SELL+ L+S ++ TL+E SAEQA + +LR
Sbjct: 688 KDFINSELLAQLYSSEDQNTLMEESAEQAQRRDEMLR 724
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 4 KEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
K+FI SELL+ L+S ++ TL+E SAEQA + +LR
Sbjct: 684 KDFINSELLAQLYSSEDQNTLMEESAEQAQRRDEMLR 720
>gi|239756350 PREDICTED: UPF0621 protein C-like [Homo sapiens]
Length = 135
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 5 EFIFSELLSNLHSRGNEKTLVEASAEQA 32
EFIFSELL+ L+S G+E L+E S EQA
Sbjct: 72 EFIFSELLAKLYSCGDENMLMEDSTEQA 99
>gi|239750876 PREDICTED: UPF0621 protein C-like [Homo sapiens]
Length = 135
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 5 EFIFSELLSNLHSRGNEKTLVEASAEQA 32
EFIFSELL+ L+S G+E L+E S EQA
Sbjct: 72 EFIFSELLAKLYSCGDENMLMEDSTEQA 99
>gi|169208224 PREDICTED: UPF0621 protein C-like [Homo sapiens]
Length = 155
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 5 EFIFSELLSNLHSRGNEKTLVEASAEQA 32
EFIFSELL+ L+S G+E L+E S EQA
Sbjct: 92 EFIFSELLAKLYSCGDENMLMEDSTEQA 119
>gi|56549125 dynamin 2 isoform 4 [Homo sapiens]
Length = 866
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 3 TKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
TK FI ELL+ L+S ++ +L+E SA+QA + +LR
Sbjct: 683 TKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLR 720
>gi|56549123 dynamin 2 isoform 2 [Homo sapiens]
Length = 870
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 3 TKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
TK FI ELL+ L+S ++ +L+E SA+QA + +LR
Sbjct: 687 TKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLR 724
>gi|56549121 dynamin 2 isoform 1 [Homo sapiens]
Length = 870
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 3 TKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
TK FI ELL+ L+S ++ +L+E SA+QA + +LR
Sbjct: 687 TKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLR 724
>gi|56549119 dynamin 2 isoform 3 [Homo sapiens]
Length = 866
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 3 TKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLR 40
TK FI ELL+ L+S ++ +L+E SA+QA + +LR
Sbjct: 683 TKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLR 720
>gi|239787787 kin of IRRE like 3 isoform 2 [Homo sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 20 NEKTLVEASAEQADQGVHLLRAAVQPALAWEREDT 54
NEKTL S Q D G ++ RA V A ERE T
Sbjct: 379 NEKTLTLKSVRQEDAGKYVCRAVVPRVGAGEREVT 413
>gi|26006461 kin of IRRE like 3 isoform 1 [Homo sapiens]
Length = 778
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 20 NEKTLVEASAEQADQGVHLLRAAVQPALAWEREDT 54
NEKTL S Q D G ++ RA V A ERE T
Sbjct: 379 NEKTLTLKSVRQEDAGKYVCRAVVPRVGAGEREVT 413
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 26.6 bits (57), Expect = 4.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 22 KTLVEASAEQADQGVHLLRAAVQPALAWE 50
+ L EA ++A + LLR VQ AL WE
Sbjct: 515 RRLQEALGDEASECSELLRQLVQEALQWE 543
>gi|113425405 PREDICTED: similar to dynamin 1 [Homo sapiens]
Length = 105
Score = 25.8 bits (55), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 LHSRGNEKTLVEASAEQADQGVHLL 39
++S GN+ TL+E AEQA Q +L
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
>gi|239745286 PREDICTED: hypothetical protein XP_002343417 [Homo
sapiens]
Length = 103
Score = 25.8 bits (55), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 LHSRGNEKTLVEASAEQADQGVHLL 39
++S GN+ TL+E AEQA Q +L
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
>gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo
sapiens]
Length = 63
Score = 25.8 bits (55), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 LHSRGNEKTLVEASAEQADQGVHLL 39
++S GN+ TL+E AEQA Q +L
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
>gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo
sapiens]
Length = 63
Score = 25.8 bits (55), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 LHSRGNEKTLVEASAEQADQGVHLL 39
++S GN+ TL+E AEQA Q +L
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,787,014
Number of Sequences: 37866
Number of extensions: 44961
Number of successful extensions: 101
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 27
length of query: 56
length of database: 18,247,518
effective HSP length: 29
effective length of query: 27
effective length of database: 17,149,404
effective search space: 463033908
effective search space used: 463033908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.