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Search of human proteins with 239745270
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo
sapiens]
(63 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo ... 136 3e-33
gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo ... 136 3e-33
gi|113425405 PREDICTED: similar to dynamin 1 [Homo sapiens] 127 2e-30
gi|239745286 PREDICTED: hypothetical protein XP_002343417 [Homo ... 117 2e-27
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 104 2e-23
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 104 2e-23
gi|56549125 dynamin 2 isoform 4 [Homo sapiens] 88 2e-18
gi|56549123 dynamin 2 isoform 2 [Homo sapiens] 88 2e-18
gi|56549121 dynamin 2 isoform 1 [Homo sapiens] 88 2e-18
gi|56549119 dynamin 2 isoform 3 [Homo sapiens] 88 2e-18
gi|42544243 dynamin 3 isoform a [Homo sapiens] 86 6e-18
gi|209915561 dynamin 3 isoform b [Homo sapiens] 86 6e-18
gi|239756350 PREDICTED: UPF0621 protein C-like [Homo sapiens] 60 4e-10
gi|239750876 PREDICTED: UPF0621 protein C-like [Homo sapiens] 60 4e-10
gi|169208224 PREDICTED: UPF0621 protein C-like [Homo sapiens] 60 4e-10
gi|239756412 PREDICTED: similar to dynamin 1, partial [Homo sapi... 36 0.006
gi|239756410 PREDICTED: similar to dynamin 1, partial [Homo sapi... 32 0.084
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 27 4.6
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 27 4.6
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 27 4.6
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ... 27 4.6
gi|239745346 PREDICTED: hypothetical protein XP_002343442, parti... 26 7.8
>gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo
sapiens]
Length = 63
Score = 136 bits (343), Expect = 3e-33
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60
MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60
Query: 61 EHP 63
EHP
Sbjct: 61 EHP 63
>gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo
sapiens]
Length = 63
Score = 136 bits (343), Expect = 3e-33
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60
MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60
Query: 61 EHP 63
EHP
Sbjct: 61 EHP 63
>gi|113425405 PREDICTED: similar to dynamin 1 [Homo sapiens]
Length = 105
Score = 127 bits (319), Expect = 2e-30
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
>gi|239745286 PREDICTED: hypothetical protein XP_002343417 [Homo
sapiens]
Length = 103
Score = 117 bits (294), Expect = 2e-27
Identities = 57/59 (96%), Positives = 57/59 (96%), Gaps = 2/59 (3%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVT MPPPVDDTWL
Sbjct: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVT--MPPPVDDTWL 57
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 104 bits (259), Expect = 2e-23
Identities = 48/59 (81%), Positives = 54/59 (91%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YSCG+QNTLMEE AEQAQ+ DEML M+HALKEALSIIGDIN TTV+ PMPPPVDD+WL
Sbjct: 705 LYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWL 763
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 104 bits (259), Expect = 2e-23
Identities = 48/59 (81%), Positives = 54/59 (91%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YSCG+QNTLMEE AEQAQ+ DEML M+HALKEALSIIGDIN TTV+ PMPPPVDD+WL
Sbjct: 705 LYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWL 763
>gi|56549125 dynamin 2 isoform 4 [Homo sapiens]
Length = 866
Score = 87.8 bits (216), Expect = 2e-18
Identities = 39/59 (66%), Positives = 52/59 (88%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YS +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 695 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 753
>gi|56549123 dynamin 2 isoform 2 [Homo sapiens]
Length = 870
Score = 87.8 bits (216), Expect = 2e-18
Identities = 39/59 (66%), Positives = 52/59 (88%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YS +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 699 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 757
>gi|56549121 dynamin 2 isoform 1 [Homo sapiens]
Length = 870
Score = 87.8 bits (216), Expect = 2e-18
Identities = 39/59 (66%), Positives = 52/59 (88%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YS +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 699 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 757
>gi|56549119 dynamin 2 isoform 3 [Homo sapiens]
Length = 866
Score = 87.8 bits (216), Expect = 2e-18
Identities = 39/59 (66%), Positives = 52/59 (88%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YS +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 695 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 753
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 85.9 bits (211), Expect = 6e-18
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YS +QNTLMEE AEQAQ+ DEML M+ ALKEAL IIGDI+ TV+ P PPPVDD+W+
Sbjct: 699 LYSSEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGDISTATVSTPAPPPVDDSWI 757
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 85.9 bits (211), Expect = 6e-18
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
+YS +QNTLMEE AEQAQ+ DEML M+ ALKEAL IIGDI+ TV+ P PPPVDD+W+
Sbjct: 695 LYSSEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGDISTATVSTPAPPPVDDSWI 753
>gi|239756350 PREDICTED: UPF0621 protein C-like [Homo sapiens]
Length = 135
Score = 60.1 bits (144), Expect = 4e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMP 49
+YSCG++N LME+ EQA+ +E L MHH L+EA +IIGDI T V+MP
Sbjct: 82 LYSCGDENMLMEDSTEQAKWCNETLCMHHVLREAPNIIGDIKTTMVSMP 130
>gi|239750876 PREDICTED: UPF0621 protein C-like [Homo sapiens]
Length = 135
Score = 60.1 bits (144), Expect = 4e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMP 49
+YSCG++N LME+ EQA+ +E L MHH L+EA +IIGDI T V+MP
Sbjct: 82 LYSCGDENMLMEDSTEQAKWCNETLCMHHVLREAPNIIGDIKTTMVSMP 130
>gi|169208224 PREDICTED: UPF0621 protein C-like [Homo sapiens]
Length = 155
Score = 60.1 bits (144), Expect = 4e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMP 49
+YSCG++N LME+ EQA+ +E L MHH L+EA +IIGDI T V+MP
Sbjct: 102 LYSCGDENMLMEDSTEQAKWCNETLCMHHVLREAPNIIGDIKTTMVSMP 150
>gi|239756412 PREDICTED: similar to dynamin 1, partial [Homo
sapiens]
Length = 350
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALS 36
+YS N TL+EE AEQAQ+ DEML + A++ AL+
Sbjct: 158 LYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALA 193
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALS 36
+YS N TL+EE AEQAQ+ DEML + A++ AL+
Sbjct: 303 LYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALA 338
Score = 33.9 bits (76), Expect = 0.029
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDE 23
++S GN+ TLMEE AEQAQ+ DE
Sbjct: 251 LHSRGNEKTLMEESAEQAQRRDE 273
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 5 GNQNTLMEELAEQAQQHDE 23
GN+ TLMEE AEQAQ+ DE
Sbjct: 110 GNEKTLMEESAEQAQRCDE 128
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
++S GN+ TL+E AEQA Q +L
Sbjct: 15 LHSRGNEKTLVEASAEQADQGVHLL 39
>gi|239756410 PREDICTED: similar to dynamin 1, partial [Homo
sapiens]
Length = 191
Score = 32.3 bits (72), Expect = 0.084
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDE 23
++S GN+ TL+EE AEQAQ+ DE
Sbjct: 106 LHSRGNEKTLVEESAEQAQRRDE 128
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
+YS GN+ TL+EE AEQA Q +L
Sbjct: 158 LYSRGNEKTLLEESAEQADQGVHLL 182
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
+YS GN+ TL+E AEQA Q +L
Sbjct: 15 LYSRGNEKTLVEASAEQADQGVHLL 39
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 10 LMEELAEQAQQHDEMLHMHHALKEALSIIGD 40
L A+ A+QH +M H LK A +IGD
Sbjct: 40 LTPSAAQTARQHPKMHLAHSTLKPAAHLIGD 70
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 10 LMEELAEQAQQHDEMLHMHHALKEALSIIGD 40
L A+ A+QH +M H LK A +IGD
Sbjct: 40 LTPSAAQTARQHPKMHLAHSTLKPAAHLIGD 70
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 9 TLMEELAEQAQQHDEMLHMHHALK----EALSIIGDI-------------NRTTVTMPMP 51
+L LA+ Q+ LH+ LK + L + D+ NR T+ P P
Sbjct: 1711 SLQHALAQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEAGSRCFRLLFPSNRETLPDPCP 1770
Query: 52 PPVDDTWLSEHP 63
P L+EHP
Sbjct: 1771 VPYGSLQLAEHP 1782
>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
[Homo sapiens]
Length = 2080
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 9 TLMEELAEQAQQHDEMLHMHHALK----EALSIIGDI-------------NRTTVTMPMP 51
+L LA+ Q+ LH+ LK + L + D+ NR T+ P P
Sbjct: 1142 SLQHALAQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEAGSRCFRLLFPSNRETLPDPCP 1201
Query: 52 PPVDDTWLSEHP 63
P L+EHP
Sbjct: 1202 VPYGSLQLAEHP 1213
>gi|239745346 PREDICTED: hypothetical protein XP_002343442,
partial [Homo sapiens]
Length = 56
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1 MYSCGNQNTLMEELAEQAQQHDEML 25
++S GN+ TL+E AEQA Q +L
Sbjct: 15 LHSRGNEKTLVEASAEQADQGVHLL 39
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,978
Number of Sequences: 37866
Number of extensions: 85822
Number of successful extensions: 395
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 28
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.