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Search of human proteins with 239741741
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
sapiens]
(404 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo ... 837 0.0
gi|239747859 PREDICTED: hypothetical protein [Homo sapiens] 681 0.0
gi|239753290 PREDICTED: hypothetical protein XP_002345611 [Homo ... 210 2e-54
gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens] 40 0.005
gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo ... 40 0.005
gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo ... 40 0.005
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 39 0.006
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 39 0.006
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 39 0.006
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 39 0.006
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 39 0.008
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 37 0.042
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 37 0.042
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 37 0.042
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 37 0.042
gi|239751477 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 36 0.054
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 36 0.054
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 36 0.054
gi|169217823 PREDICTED: similar to IQ motif and SEC7 domain-cont... 35 0.093
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont... 35 0.093
gi|113431383 PREDICTED: hypothetical protein [Homo sapiens] 35 0.093
gi|113428915 PREDICTED: similar to IQ motif and SEC7 domain-cont... 35 0.093
gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo ... 35 0.093
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 35 0.12
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 35 0.12
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 35 0.12
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 35 0.12
>gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
sapiens]
Length = 404
Score = 837 bits (2162), Expect = 0.0
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 MRQFLPVPGFLLTIISGSIDQGSSCPRVRGVEVDRLTRFSLEESFTLTPQARLGLGKVSD 60
MRQFLPVPGFLLTIISGSIDQGSSCPRVRGVEVDRLTRFSLEESFTLTPQARLGLGKVSD
Sbjct: 1 MRQFLPVPGFLLTIISGSIDQGSSCPRVRGVEVDRLTRFSLEESFTLTPQARLGLGKVSD 60
Query: 61 QPSCVQFRNKEPVGAKSPVGQKGQCCGRRRCCGSGKAEKGRLQRRRASSPFHQEKNPDPR 120
QPSCVQFRNKEPVGAKSPVGQKGQCCGRRRCCGSGKAEKGRLQRRRASSPFHQEKNPDPR
Sbjct: 61 QPSCVQFRNKEPVGAKSPVGQKGQCCGRRRCCGSGKAEKGRLQRRRASSPFHQEKNPDPR 120
Query: 121 GKHGGATLAVDFYILHPGPASSGAVLMGRSPKLHLQEEEPELLSAVHSPGTAPPLSRGCP 180
GKHGGATLAVDFYILHPGPASSGAVLMGRSPKLHLQEEEPELLSAVHSPGTAPPLSRGCP
Sbjct: 121 GKHGGATLAVDFYILHPGPASSGAVLMGRSPKLHLQEEEPELLSAVHSPGTAPPLSRGCP 180
Query: 181 STFQLWTLLAGPEQGLGNSAGLPAWHLESQEAKGDPEPSFPVRPSQGCSRMPRFKLQLPC 240
STFQLWTLLAGPEQGLGNSAGLPAWHLESQEAKGDPEPSFPVRPSQGCSRMPRFKLQLPC
Sbjct: 181 STFQLWTLLAGPEQGLGNSAGLPAWHLESQEAKGDPEPSFPVRPSQGCSRMPRFKLQLPC 240
Query: 241 QLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQPQAIQG 300
QLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQPQAIQG
Sbjct: 241 QLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQPQAIQG 300
Query: 301 AACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSAR 360
AACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSAR
Sbjct: 301 AACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSAR 360
Query: 361 SGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
SGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR
Sbjct: 361 SGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
>gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]
Length = 595
Score = 681 bits (1758), Expect = 0.0
Identities = 349/427 (81%), Positives = 359/427 (84%), Gaps = 49/427 (11%)
Query: 27 RVRGVEVDRLTRFSLEESFTLTPQARLGLGKVSDQPSCVQFRNKEPVGAKSP-------- 78
+VRGVEVDRLTRFSLEESFTLTPQARLGLGKVSDQPSCVQFRNKEPVGAKSP
Sbjct: 169 QVRGVEVDRLTRFSLEESFTLTPQARLGLGKVSDQPSCVQFRNKEPVGAKSPCLAQSLCL 228
Query: 79 ------VGQKGQCCGRRRCCGSGK------------------------AEKGRLQRRR-- 106
GQKG+ G + + +++G L RR
Sbjct: 229 SNAGWLAGQKGKLNGDKEPALNSSHREEESTSPLELLQQEPSLRKGATSQEGSLGRRPLA 288
Query: 107 ----ASSPFHQEKNP-----DPRGKHGGATLAVDFYILHPGPASSGAVLMGRSPKLHLQE 157
A + ++P DPRGKHGGATLAVDFYILHPGPASSGAVLMGRSPKLHLQE
Sbjct: 289 MNNVAPTTLEGAQSPIGRPLDPRGKHGGATLAVDFYILHPGPASSGAVLMGRSPKLHLQE 348
Query: 158 EEPELLSAVHSPGTAPPLSRGCPSTFQLWTLLAGPEQGLGNSAGLPAWHLESQEAKGDPE 217
EEPELLSAVHSPGTAPPLSRGCPSTFQLWTLLAGPEQGLGNSAGLPAWHLESQEAKGDPE
Sbjct: 349 EEPELLSAVHSPGTAPPLSRGCPSTFQLWTLLAGPEQGLGNSAGLPAWHLESQEAKGDPE 408
Query: 218 PSFPVRPSQGCSRMPRFKLQLPCQLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVD 277
PSFPVRPSQGCSRMPRFKLQLPCQLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVD
Sbjct: 409 PSFPVRPSQGCSRMPRFKLQLPCQLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVD 468
Query: 278 GASTSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATG 337
GASTSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATG
Sbjct: 469 GASTSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATG 528
Query: 338 GDAWCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLL 397
GDAWCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLL
Sbjct: 529 GDAWCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLL 588
Query: 398 GPGGRAR 404
GPGGRAR
Sbjct: 589 GPGGRAR 595
>gi|239753290 PREDICTED: hypothetical protein XP_002345611 [Homo
sapiens]
Length = 144
Score = 210 bits (535), Expect = 2e-54
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 304 TCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGA 363
TCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGA
Sbjct: 44 TCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGA 103
Query: 364 QRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
QRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR
Sbjct: 104 QRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 144
>gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]
Length = 388
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 246 AGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQPQAIQGAACTC 305
AGW G S R D+ G D + + + N G P +P++ + +A TC
Sbjct: 16 AGWARDAGLGLSPRDLEHPRDHPEASGGHSADEEADAW-VQNPGPPDSEPRSSRASAQTC 74
Query: 306 STSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQR 365
+ S S P ++ R P V A++A + CP R RP R+P P A +R
Sbjct: 75 ARSKS---PPSQHSSETRGVPTVPASSAGYI--ETGCP---RPRPLPRMPRPLAPFQEKR 126
Query: 366 PAQGPGLRPAAAPRGAMAEPP 386
+ P P A R + E P
Sbjct: 127 FSSLPHPLPKLAGRDTLGEAP 147
>gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo
sapiens]
Length = 388
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 246 AGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQPQAIQGAACTC 305
AGW G S R D+ G D + + + N G P +P++ + +A TC
Sbjct: 16 AGWARDAGLGLSPRDLEHPRDHPEASGGHSADEEADAW-VQNPGPPDSEPRSSRASAQTC 74
Query: 306 STSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQR 365
+ S S P ++ R P V A++A + CP R RP R+P P A +R
Sbjct: 75 ARSKS---PPSQHSSETRGVPTVPASSAGYI--ETGCP---RPRPLPRMPRPLAPFQEKR 126
Query: 366 PAQGPGLRPAAAPRGAMAEPP 386
+ P P A R + E P
Sbjct: 127 FSSLPHPLPKLAGRDTLGEAP 147
>gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo
sapiens]
Length = 388
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 246 AGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQPQAIQGAACTC 305
AGW G S R D+ G D + + + N G P +P++ + +A TC
Sbjct: 16 AGWARDAGLGLSPRDLEHPRDHPEASGGHSADEEADAW-VQNPGPPDSEPRSSRASAQTC 74
Query: 306 STSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQR 365
+ S S P ++ R P V A++A + CP R RP R+P P A +R
Sbjct: 75 ARSKS---PPSQHSSETRGVPTVPASSAGYI--ETGCP---RPRPLPRMPRPLAPFQEKR 126
Query: 366 PAQGPGLRPAAAPRGAMAEPP 386
+ P P A R + E P
Sbjct: 127 FSSLPHPLPKLAGRDTLGEAP 147
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 39.3 bits (90), Expect = 0.006
Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 285 LPNLGH-PWPQPQ-----AIQGAACTCSTSH-SRGRAPVCNARRRRAAPAVVAAAAAATG 337
L L H PWP+ Q + A S + S G AP A R P + + A G
Sbjct: 8 LSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPG 67
Query: 338 GDA--WCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLL 395
G WC R P P PS RPA P P+A PRG A
Sbjct: 68 GRTARWCSGRARRPP----PQPS------RPAPPPPAPPSALPRGGRAARAG-------- 109
Query: 396 LLGPGGRAR 404
GPG RAR
Sbjct: 110 --GPGSRAR 116
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/137 (31%), Positives = 48/137 (35%), Gaps = 37/137 (27%)
Query: 285 LPNLGH-PWPQPQAIQG--------------AACTCSTSHSRGRAPVCNARRRRAAPAVV 329
L L H PWP+ QA G A + S G AP A R P +
Sbjct: 8 LSTLSHCPWPRQQAPLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLA 67
Query: 330 AAAAAATGGDA--WCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPD 387
+ A GG WC R P P PS RPA P P+A PRG A
Sbjct: 68 SPAGHLPGGRTARWCSGRARRPP----PQPS------RPAPPPPAPPSALPRGGRAARAG 117
Query: 388 LRRAPGLLLLGPGGRAR 404
GPG RAR
Sbjct: 118 ----------GPGSRAR 124
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 39.3 bits (90), Expect = 0.006
Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 285 LPNLGH-PWPQPQ-----AIQGAACTCSTSH-SRGRAPVCNARRRRAAPAVVAAAAAATG 337
L L H PWP+ Q + A S + S G AP A R P + + A G
Sbjct: 8 LSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPG 67
Query: 338 GDA--WCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLL 395
G WC R P P PS RPA P P+A PRG A
Sbjct: 68 GRTARWCSGRARRPP----PQPS------RPAPPPPAPPSALPRGGRAARAG-------- 109
Query: 396 LLGPGGRAR 404
GPG RAR
Sbjct: 110 --GPGSRAR 116
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/137 (31%), Positives = 48/137 (35%), Gaps = 37/137 (27%)
Query: 285 LPNLGH-PWPQPQAIQG--------------AACTCSTSHSRGRAPVCNARRRRAAPAVV 329
L L H PWP+ QA G A + S G AP A R P +
Sbjct: 8 LSTLSHCPWPRQQAPLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLA 67
Query: 330 AAAAAATGGDA--WCPHVPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPD 387
+ A GG WC R P P PS RPA P P+A PRG A
Sbjct: 68 SPAGHLPGGRTARWCSGRARRPP----PQPS------RPAPPPPAPPSALPRGGRAARAG 117
Query: 388 LRRAPGLLLLGPGGRAR 404
GPG RAR
Sbjct: 118 ----------GPGSRAR 124
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 38.9 bits (89), Expect = 0.008
Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 6/166 (3%)
Query: 235 KLQLPCQLGFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGHPWPQ 294
K++ P ++ S+ VSQ +S + D W+ Q+ V G P P
Sbjct: 415 KVKGPGKMSHSSSGPASVSQLSSWKTPEQP-DPVWV--QSSVSGKGEKHPPPRTQLPSSS 471
Query: 295 PQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHV-PRGRPDVR 353
+ G + + S + P A AA A AAAAAA A P + P +
Sbjct: 472 GKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALA 531
Query: 354 LPVPSARSGAQRPAQGPGLRP--AAAPRGAMAEPPDLRRAPGLLLL 397
A + A PA P P AAAP A + P + P + L+
Sbjct: 532 AAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLI 577
Score = 33.5 bits (75), Expect = 0.35
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 288 LGHPWPQPQAIQGAACTCSTSHSRGRAPV-CNARRRRAAPAVVAAAAAATGGDAWCPHVP 346
L P+ AI AA + + + A A AAPA+ AAAA A A P
Sbjct: 489 LKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAP 548
Query: 347 RGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGA-MAEPPD--LRRAPGLLL 396
P V +A S A +Q P + A R A+PP ++ AP + L
Sbjct: 549 AAAPAVAAAPAAAASAAPSHSQKPSVPLIQASRPCPAAQPPTKFIKIAPAIQL 601
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.042
Identities = 49/177 (27%), Positives = 63/177 (35%), Gaps = 19/177 (10%)
Query: 243 GFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGH----PWPQPQAI 298
G +G TG ++QG R+ A RL N L+ + + S LP P PQ A
Sbjct: 223 GRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQHGAP 282
Query: 299 QGAACTCSTSHSRGRAPV---CNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLP 355
A + AP +AR R AA AW P LP
Sbjct: 283 LDVAHVPDSGPRAASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTCPP-PLP 341
Query: 356 VPSARSGAQR--------PAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
S +GA+R P G RP + EPP +R P +G GR R
Sbjct: 342 AASLAAGAERARLNLPFIPGPGGRARPRWSFTAGAPEPP--KRVPA-QAVGAHGRCR 395
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.042
Identities = 49/177 (27%), Positives = 63/177 (35%), Gaps = 19/177 (10%)
Query: 243 GFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGH----PWPQPQAI 298
G +G TG ++QG R+ A RL N L+ + + S LP P PQ A
Sbjct: 223 GRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQHGAP 282
Query: 299 QGAACTCSTSHSRGRAPV---CNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLP 355
A + AP +AR R AA AW P LP
Sbjct: 283 LDVAHVPDSGPRAASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTCPP-PLP 341
Query: 356 VPSARSGAQR--------PAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
S +GA+R P G RP + EPP +R P +G GR R
Sbjct: 342 AASLAAGAERARLNLPFIPGPGGRARPRWSFTAGAPEPP--KRVPA-QAVGAHGRCR 395
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.042
Identities = 49/177 (27%), Positives = 63/177 (35%), Gaps = 19/177 (10%)
Query: 243 GFSAGWTGQVSQGTSRRLQAMRLDNAWLVGQTDVDGASTSERLPNLGH----PWPQPQAI 298
G +G TG ++QG R+ A RL N L+ + + S LP P PQ A
Sbjct: 223 GRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQHGAP 282
Query: 299 QGAACTCSTSHSRGRAPV---CNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLP 355
A + AP +AR R AA AW P LP
Sbjct: 283 LDVAHVPDSGPRAASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTCPP-PLP 341
Query: 356 VPSARSGAQR--------PAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
S +GA+R P G RP + EPP +R P +G GR R
Sbjct: 342 AASLAAGAERARLNLPFIPGPGGRARPRWSFTAGAPEPP--KRVPA-QAVGAHGRCR 395
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 36.6 bits (83), Expect = 0.042
Identities = 37/115 (32%), Positives = 42/115 (36%), Gaps = 24/115 (20%)
Query: 292 WPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDA--WCPHVPRGR 349
WP A+ A + S G AP A R P + + A GG WC R
Sbjct: 41 WPTLAAL--ALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRP 98
Query: 350 PDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLLLGPGGRAR 404
P P PS RPA P P+A PRG A GPG RAR
Sbjct: 99 P----PQPS------RPAPPPPAPPSALPRGGRAARAG----------GPGSRAR 133
>gi|239751477 PREDICTED: hypothetical protein [Homo sapiens]
Length = 270
Score = 36.2 bits (82), Expect = 0.054
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 30/159 (18%)
Query: 197 GNSAGLPAWHLE----------SQEAKGDPEPSFPVR--PSQGCSRMPRFKLQLPCQLGF 244
G S G PA+ LE S + G+P S P+R P++ R+P L
Sbjct: 14 GCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRVPWLALS------- 66
Query: 245 SAGWTGQVSQGTSRRLQAMRLDN--AWLVGQTDVDGASTSERLPNLGHPWPQPQAIQGAA 302
G+V + R + + +WL V + + P+ G PW A A
Sbjct: 67 ----RGRVPRSPDRSVHCYQPGPMISWLSQWIVV--FNVTAYWPSSG-PWGPLSAASCAF 119
Query: 303 CTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAW 341
TC H+R RAPV A AP V A+A W
Sbjct: 120 RTCL--HARARAPVSRAGTMELAPGTVELASAVAESGLW 156
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 36.2 bits (82), Expect = 0.054
Identities = 30/77 (38%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 331 AAAAATGGDAWCPHVPRG----RPDVRLP-VPSARSGAQRPAQGPGLRPAAAPRG---AM 382
AA TG P P G RPD P VPSA A P P RP+A G A
Sbjct: 140 AARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCPPHAPLARPSAVAEGPGLAQ 199
Query: 383 AEPPDLRRAPGLLLLGP 399
A RR PG GP
Sbjct: 200 ASGGSWRRCPGASSAGP 216
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 36.2 bits (82), Expect = 0.054
Identities = 30/77 (38%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 331 AAAAATGGDAWCPHVPRG----RPDVRLP-VPSARSGAQRPAQGPGLRPAAAPRG---AM 382
AA TG P P G RPD P VPSA A P P RP+A G A
Sbjct: 140 AARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCPPHAPLARPSAVAEGPGLAQ 199
Query: 383 AEPPDLRRAPGLLLLGP 399
A RR PG GP
Sbjct: 200 ASGGSWRRCPGASSAGP 216
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 36.2 bits (82), Expect = 0.054
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 295 PQAIQGAACTCSTSH-SRGRAPVCNARR-RRAAPAVVAAAAAATGGDAWCPHVPRGRPDV 352
PQA + AC ST SRGR P A RR AVV A AA T +P+ P
Sbjct: 203 PQAPRSRACEPSTPRRSRGRPPGRPAGPCRRKQQAVVVAEAAVT--------IPKPEPPP 254
Query: 353 RLPVPSARSGAQRPAQGPGLRPAAAPRGAMA 383
+ ++G+ + +GPG P RG +
Sbjct: 255 PVVPVKHQTGSWKCKEGPGPGPGTPRRGGQS 285
>gi|169217823 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.093
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 350 PDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLL----LGPGGRA 403
P P+A + AQ P Q G R AAAP A PP R+ G LL GPG RA
Sbjct: 77 PAAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPP--RQHHGQLLEQPQRGPGSRA 132
>gi|169214926 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.093
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 350 PDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLL----LGPGGRA 403
P P+A + AQ P Q G R AAAP A PP R+ G LL GPG RA
Sbjct: 77 PAAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPP--RQHHGQLLEQPQRGPGSRA 132
>gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.093
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 350 PDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLL----LGPGGRA 403
P P+A + AQ P Q G R AAAP A PP R+ G LL GPG RA
Sbjct: 77 PAAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPP--RQHHGQLLEQPQRGPGSRA 132
>gi|113428915 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.093
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 350 PDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLL----LGPGGRA 403
P P+A + AQ P Q G R AAAP A PP R+ G LL GPG RA
Sbjct: 77 PAAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPP--RQHHGQLLEQPQRGPGSRA 132
>gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo
sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.093
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 350 PDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPGLLL----LGPGGRA 403
P P+A + AQ P Q G R AAAP A PP R+ G LL GPG RA
Sbjct: 77 PAAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPP--RQHHGQLLEQPQRGPGSRA 132
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 35.0 bits (79), Expect = 0.12
Identities = 38/129 (29%), Positives = 45/129 (34%), Gaps = 12/129 (9%)
Query: 283 ERLPNLGHPWPQPQAIQGAACTCSTSHSRGRA-PVCNARRRRAAPAVVAAAAAATGGDAW 341
++ P G +P P AA S H + A A A AA A G W
Sbjct: 396 QKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW 455
Query: 342 CPHVPRGRPDVRLPV------PSARSGAQRPAQ-GPGLRPAAAPRGAMAEPPDLRRAPGL 394
P GR D P P G P P +P +A A+ E P L R L
Sbjct: 456 ----PAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFL 511
Query: 395 LLLGPGGRA 403
L PGG A
Sbjct: 512 DLAEPGGAA 520
Score = 30.0 bits (66), Expect = 3.9
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 312 GRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQRP 366
G P C+ A AV AAAA A GG PH+ P P P A P
Sbjct: 248 GAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAP 302
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 290 HPWPQPQAIQGAACT-CSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRG 348
HP P+ ++ C CS GRA R+ V++ + + + PH R
Sbjct: 70 HPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESEG--PH-RRR 126
Query: 349 RPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLRRAPG 393
+P P + +GA+ P Q PG AAA R + A P RR G
Sbjct: 127 KPGAESPRRAIEAGARPPRQRPGAGTAAA-RASRAGPRASRRGRG 170
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 35.0 bits (79), Expect = 0.12
Identities = 38/129 (29%), Positives = 45/129 (34%), Gaps = 12/129 (9%)
Query: 283 ERLPNLGHPWPQPQAIQGAACTCSTSHSRGRA-PVCNARRRRAAPAVVAAAAAATGGDAW 341
++ P G +P P AA S H + A A A AA A G W
Sbjct: 396 QKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW 455
Query: 342 CPHVPRGRPDVRLPV------PSARSGAQRPAQ-GPGLRPAAAPRGAMAEPPDLRRAPGL 394
P GR D P P G P P +P +A A+ E P L R L
Sbjct: 456 ----PAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFL 511
Query: 395 LLLGPGGRA 403
L PGG A
Sbjct: 512 DLAEPGGAA 520
Score = 30.0 bits (66), Expect = 3.9
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 312 GRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQRP 366
G P C+ A AV AAAA A GG PH+ P P P A P
Sbjct: 248 GAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAP 302
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 35.0 bits (79), Expect = 0.12
Identities = 38/129 (29%), Positives = 45/129 (34%), Gaps = 12/129 (9%)
Query: 283 ERLPNLGHPWPQPQAIQGAACTCSTSHSRGRA-PVCNARRRRAAPAVVAAAAAATGGDAW 341
++ P G +P P AA S H + A A A AA A G W
Sbjct: 396 QKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW 455
Query: 342 CPHVPRGRPDVRLPV------PSARSGAQRPAQ-GPGLRPAAAPRGAMAEPPDLRRAPGL 394
P GR D P P G P P +P +A A+ E P L R L
Sbjct: 456 ----PAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFL 511
Query: 395 LLLGPGGRA 403
L PGG A
Sbjct: 512 DLAEPGGAA 520
Score = 30.0 bits (66), Expect = 3.9
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 312 GRAPVCNARRRRAAPAVVAAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQRP 366
G P C+ A AV AAAA A GG PH+ P P P A P
Sbjct: 248 GAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAP 302
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 35.0 bits (79), Expect = 0.12
Identities = 42/151 (27%), Positives = 50/151 (33%), Gaps = 44/151 (29%)
Query: 282 SERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAW 341
S R P P P+ GA H G+ +AAAAA T G W
Sbjct: 52 SPRAPGSAQPISAPEGRGGAGSRSRYCHGDGK---------------LAAAAAGTVGPRW 96
Query: 342 CPHVP----------------RGRPDVRLPVPSARS-----------GAQRPAQGPGLRP 374
P R RP P S+R+ G+ PA P L P
Sbjct: 97 LPAGQCLSEAERPRRPEPGGARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPP 156
Query: 375 AAAPRGAMAEP--PDLRRAPGLLLLGPGGRA 403
AAPR A P + P L +G G RA
Sbjct: 157 LAAPRPLSARPRLRPPQPQPLALTVGNGPRA 187
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 35.0 bits (79), Expect = 0.12
Identities = 36/129 (27%), Positives = 44/129 (34%), Gaps = 22/129 (17%)
Query: 280 STSERLP--------NLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPAVV-- 329
S S RLP + G P + G C C+ RA RRR +PA
Sbjct: 16 SGSRRLPKAEGDKSGSAGAPSKNSSRLGGRPCMCTAGRRPNRAS--GRRRRSCSPAPTWP 73
Query: 330 -------AAAAAATGGDAWCPHVPRGRPDVRLPVPSARSGAQRPAQ--GPGLRPAAAPRG 380
+ A+ G C GRP +A RP + GP LRP P
Sbjct: 74 PLCCYPQSRPTASAAGPGACMRAS-GRPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCA 132
Query: 381 AMAEPPDLR 389
A PP R
Sbjct: 133 GPAPPPASR 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,350,754
Number of Sequences: 37866
Number of extensions: 1227197
Number of successful extensions: 5991
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 5636
Number of HSP's gapped (non-prelim): 551
length of query: 404
length of database: 18,247,518
effective HSP length: 105
effective length of query: 299
effective length of database: 14,271,588
effective search space: 4267204812
effective search space used: 4267204812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.