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Search of human proteins with 239741394
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo
sapiens]
(209 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747516 PREDICTED: hypothetical protein [Homo sapiens] 441 e-124
gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo ... 441 e-124
gi|4507741 twist [Homo sapiens] 46 3e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 45 3e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 45 3e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 45 3e-05
gi|197333809 joined to JAZF1 [Homo sapiens] 45 4e-05
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 43 2e-04
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 43 2e-04
gi|109452587 family with sequence similarity 98, member B isofor... 43 2e-04
gi|12056465 fibrillarin [Homo sapiens] 43 2e-04
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 42 3e-04
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 42 3e-04
gi|55956788 nucleolin [Homo sapiens] 42 4e-04
gi|4502565 calpain, small subunit 1 [Homo sapiens] 42 4e-04
gi|51599151 calpain, small subunit 1 [Homo sapiens] 42 4e-04
gi|55956899 keratin 9 [Homo sapiens] 41 6e-04
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens] 41 6e-04
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 41 8e-04
gi|238859557 regulatory factor X1 [Homo sapiens] 40 0.001
gi|15055539 ribosomal protein S2 [Homo sapiens] 40 0.001
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 40 0.001
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 40 0.001
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 40 0.001
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 40 0.001
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 40 0.001
gi|109255251 loricrin [Homo sapiens] 40 0.002
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 40 0.002
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 39 0.002
gi|33620755 YEATS domain containing 2 [Homo sapiens] 39 0.002
>gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 209
Score = 441 bits (1135), Expect = e-124
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MNCLKGPPIPQNQNGTFSTRDKKLLKSRKVRFQEPFYGPYLFLSSPNSSYCSHSPGETFW 60
MNCLKGPPIPQNQNGTFSTRDKKLLKSRKVRFQEPFYGPYLFLSSPNSSYCSHSPGETFW
Sbjct: 1 MNCLKGPPIPQNQNGTFSTRDKKLLKSRKVRFQEPFYGPYLFLSSPNSSYCSHSPGETFW 60
Query: 61 SSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDW 120
SSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDW
Sbjct: 61 SSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDW 120
Query: 121 AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG 180
AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG
Sbjct: 121 AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG 180
Query: 181 CRGGGDGRGDSELRGAAARTSAVIFHTMC 209
CRGGGDGRGDSELRGAAARTSAVIFHTMC
Sbjct: 181 CRGGGDGRGDSELRGAAARTSAVIFHTMC 209
>gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo
sapiens]
Length = 209
Score = 441 bits (1135), Expect = e-124
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MNCLKGPPIPQNQNGTFSTRDKKLLKSRKVRFQEPFYGPYLFLSSPNSSYCSHSPGETFW 60
MNCLKGPPIPQNQNGTFSTRDKKLLKSRKVRFQEPFYGPYLFLSSPNSSYCSHSPGETFW
Sbjct: 1 MNCLKGPPIPQNQNGTFSTRDKKLLKSRKVRFQEPFYGPYLFLSSPNSSYCSHSPGETFW 60
Query: 61 SSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDW 120
SSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDW
Sbjct: 61 SSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDW 120
Query: 121 AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG 180
AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG
Sbjct: 121 AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG 180
Query: 181 CRGGGDGRGDSELRGAAARTSAVIFHTMC 209
CRGGGDGRGDSELRGAAARTSAVIFHTMC
Sbjct: 181 CRGGGDGRGDSELRGAAARTSAVIFHTMC 209
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 45.8 bits (107), Expect = 3e-05
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 119 DWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRG----------PAAWDR 168
D + EEE + + G SSR AGGGAG GG + G PA R
Sbjct: 15 DSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKR 74
Query: 169 IRVNGGLGGGGGCRGGG 185
+ + G GGGGG GGG
Sbjct: 75 GKKSAGCGGGGGAGGGG 91
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/64 (43%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 139 CRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAA 198
C SR AGGG GGGGG G +GG GGGGG GG G G AAA
Sbjct: 237 CNHYPGYSRPGAGGGGGGGGGGGGG--------SGGGGGGGGAGAGGAGAGAVAAAAAAA 288
Query: 199 RTSA 202
+A
Sbjct: 289 AAAA 292
Score = 33.9 bits (76), Expect = 0.10
Identities = 17/39 (43%), Positives = 17/39 (43%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGGAG GG G A GGGGG GG G
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.2 bits (69), Expect = 0.66
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 151 GGGAGGGGGSRG------PAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGG GGG G+ G AA G GGGGG G G G
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Score = 31.2 bits (69), Expect = 0.66
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSA 202
A G GGGGG G +A + + GGG G G G G + L AAA ++A
Sbjct: 290 AAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG-GAASLSKAAAGSAA 341
Score = 27.3 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 166 WDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAVI 204
+ R GG GGGGG GG G G GA + +
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/64 (43%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 139 CRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAA 198
C SR AGGG GGGGG G +GG GGGGG GG G G AAA
Sbjct: 237 CNHYPGYSRPGAGGGGGGGGGGGGG--------SGGGGGGGGAGAGGAGAGAVAAAAAAA 288
Query: 199 RTSA 202
+A
Sbjct: 289 AAAA 292
Score = 33.9 bits (76), Expect = 0.10
Identities = 17/39 (43%), Positives = 17/39 (43%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGGAG GG G A GGGGG GG G
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.2 bits (69), Expect = 0.66
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 151 GGGAGGGGGSRG------PAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGG GGG G+ G AA G GGGGG G G G
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Score = 31.2 bits (69), Expect = 0.66
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSA 202
A G GGGGG G +A + + GGG G G G G + L AAA ++A
Sbjct: 290 AAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG-GAASLSKAAAGSAA 341
Score = 27.3 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 166 WDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAVI 204
+ R GG GGGGG GG G G GA + +
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/64 (43%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 139 CRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAA 198
C SR AGGG GGGGG G +GG GGGGG GG G G AAA
Sbjct: 237 CNHYPGYSRPGAGGGGGGGGGGGGG--------SGGGGGGGGAGAGGAGAGAVAAAAAAA 288
Query: 199 RTSA 202
+A
Sbjct: 289 AAAA 292
Score = 33.9 bits (76), Expect = 0.10
Identities = 17/39 (43%), Positives = 17/39 (43%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGGAG GG G A GGGGG GG G
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.2 bits (69), Expect = 0.66
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 151 GGGAGGGGGSRG------PAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGG GGG G+ G AA G GGGGG G G G
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Score = 31.2 bits (69), Expect = 0.66
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSA 202
A G GGGGG G +A + + GGG G G G G + L AAA ++A
Sbjct: 290 AAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG-GAASLSKAAAGSAA 341
Score = 27.3 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 166 WDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAVI 204
+ R GG GGGGG GG G G GA + +
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
>gi|197333809 joined to JAZF1 [Homo sapiens]
Length = 739
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 151 GGGAG-----GGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAVI 204
GGG+G GGGG G AA +GG GGG C GGG S AAA +AV+
Sbjct: 11 GGGSGPSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSAAAAAGAAVL 69
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 121 AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG 180
A E++E+E EAE + P AGGG GGGGS V+GG GGGG
Sbjct: 17 APEEDEDEAEAEDPERP---------NAGAGGGRSGGGGS---------SVSGGGGGGGA 58
Query: 181 CRGGGDGRGDSELRGA 196
GG G G + R A
Sbjct: 59 GAGGCGGPGGALTRRA 74
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 121 AAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG 180
A E++E+E EAE + P AGGG GGGGS V+GG GGGG
Sbjct: 17 APEEDEDEAEAEDPERP---------NAGAGGGRSGGGGS---------SVSGGGGGGGA 58
Query: 181 CRGGGDGRGDSELRGA 196
GG G G + R A
Sbjct: 59 GAGGCGGPGGALTRRA 74
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 43.1 bits (100), Expect = 2e-04
Identities = 25/50 (50%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGG-----CRGGGDGRGDSELRG 195
GGG GGGGG G W GG GGGGG GGG GRG + RG
Sbjct: 344 GGGRGGGGGGGGRGGWGG--GGGGWGGGGGGGGGWGGGGGGGRGGFQGRG 391
Score = 41.6 bits (96), Expect = 5e-04
Identities = 25/51 (49%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 147 RWEAGGGAGGGGGSRGPAAWDRIRVNGG--LGGGGGCRGGGDGRGDSELRG 195
R GGG G GG G W GG GGGGG RGG GRGD RG
Sbjct: 347 RGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRG 397
Score = 40.4 bits (93), Expect = 0.001
Identities = 22/39 (56%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
G G GGGGG RG R GG GGGGG GGG G G
Sbjct: 337 GWGGGGGGGGRGGGGGGGGR--GGWGGGGGGWGGGGGGG 373
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/44 (52%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 147 RWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGG-GGCRGGGDGRG 189
R E GGG GG GG G R GG GGG GG GGG G G
Sbjct: 328 RQEGGGGRGGWGGGGGGGG----RGGGGGGGGRGGWGGGGGGWG 367
Score = 33.5 bits (75), Expect = 0.13
Identities = 21/39 (53%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGG GGGGG G + GG GG GG RGG GRG
Sbjct: 373 GGGWGGGGGG-GRGGFQGRGDYGGRGGYGG-RGGYGGRG 409
Score = 32.7 bits (73), Expect = 0.23
Identities = 19/36 (52%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
GG GG GG G D GG GGGGG GGG G
Sbjct: 397 GGYGGRGGYGGRGYGDPY---GGGGGGGGGGGGGGG 429
Score = 31.6 bits (70), Expect = 0.51
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGG------------LGGGGGCRGGGDGRG 189
GGG GG GG +G + GG GGGGG GGG G G
Sbjct: 378 GGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGG 428
Score = 27.7 bits (60), Expect = 7.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 166 WDRIRVNGGLGGGGGCRGGGDGRG 189
W + + GG GG G GGG GRG
Sbjct: 325 WQKRQEGGGGRGGWGGGGGGGGRG 348
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 42.7 bits (99), Expect = 2e-04
Identities = 24/48 (50%), Positives = 24/48 (50%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAAR 199
GG GG GG RG R R GG GGGGG GGG G G G R
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR 72
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/52 (50%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGD-------GRGDSELRG 195
GGG G GGG RG R GG GGGGG RGGG GRG RG
Sbjct: 31 GGGRGRGGGFRGRG---RGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
Score = 32.7 bits (73), Expect = 0.23
Identities = 24/59 (40%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 151 GGGAGGGGG--SRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAVIFHT 207
GGG GG GG RG R GG G GGG RG G G G G FH+
Sbjct: 9 GGGFGGRGGFGDRGGRG-GRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 42.4 bits (98), Expect = 3e-04
Identities = 27/55 (49%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELR----GAAART 200
AGGG GGGGG G GG+GGGG GGG G G S +R GAA R+
Sbjct: 59 AGGGGGGGGGGGGGGG------GGGVGGGGA--GGGAGGGRSPVRELDMGAAERS 105
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 17/64 (26%)
Query: 140 RSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAAR 199
R SS A GG GGGGG GGGG GGG G GA
Sbjct: 48 RDDRSSPAVRAAGGGGGGGG-----------------GGGGGGGGGGVGGGGAGGGAGGG 90
Query: 200 TSAV 203
S V
Sbjct: 91 RSPV 94
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 42.4 bits (98), Expect = 3e-04
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 129 EEAEQQDGPCCRSSLSSSRWEAGGGAGGG----GGSRGPAAWDRIRVN------GGLGGG 178
E+ +Q D RS AGGG GGG GGS G A R++ + GG GGG
Sbjct: 17 EQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGG 76
Query: 179 GGCRGGGDGRGDSE 192
GG G G G E
Sbjct: 77 GGGAGAAGGGGGGE 90
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 42.0 bits (97), Expect = 4e-04
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRG 195
GG GG GG RG R GG GG GG RGG G GD + +G
Sbjct: 661 GGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQG 704
Score = 34.7 bits (78), Expect = 0.060
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 119 DWAAEDEEEEEEAEQQDGPCC--RSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLG 176
D+ +E++ + + +DG + +L ++ + GG GG GG RG G G
Sbjct: 616 DFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG-----------GFG 664
Query: 177 GGGGCRG-----GGDGRGDSELRG 195
G GG RG GG GRG RG
Sbjct: 665 GRGGGRGGRGGFGGRGRGGFGGRG 688
Score = 32.0 bits (71), Expect = 0.39
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 82 DEDKADEIQNLDNMEEEKWVSGAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQD 135
++D+ D+ D+ EEE + + + K + AEDE+EEE+ E +D
Sbjct: 193 EDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDED 246
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 42.0 bits (97), Expect = 4e-04
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 143 LSSSRWEAGGGAGGGGGSRGPAAWDRI------RVNGGLGGGGGCRGGGDGRGDSELRGA 196
L +S + GGG GGGGG G + + GG GGGGG GGG G G + +R
Sbjct: 3 LVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRIL 62
Query: 197 AARTSAV 203
SA+
Sbjct: 63 GGVISAI 69
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 42.0 bits (97), Expect = 4e-04
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 143 LSSSRWEAGGGAGGGGGSRGPAAWDRI------RVNGGLGGGGGCRGGGDGRGDSELRGA 196
L +S + GGG GGGGG G + + GG GGGGG GGG G G + +R
Sbjct: 3 LVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRIL 62
Query: 197 AARTSAV 203
SA+
Sbjct: 63 GGVISAI 69
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 41.2 bits (95), Expect = 6e-04
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDS 191
+GGG GGG GSRG + +G GG GG GGG G G S
Sbjct: 502 SGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHS 543
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 139 CRSSLSSSRWEAGGGAGGGGGSRGP--AAWDRIRVNGGLGGGGG-CRGGGDGRGDSELRG 195
CR SS +GGG GGG GS G +++ R +GG GGGG G G G S + G
Sbjct: 3 CRQFSSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCG 62
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGG-GGCRGGGDGRGDS 191
S SR +GG GGG GS G + GG GGG GG GG G G S
Sbjct: 510 SGSRGGSGGSYGGGSGSGGGS-------GGGYGGGSGGGHSGGSGGGHS 551
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGG+G GGGS G +G GG GG GGG G G
Sbjct: 559 GGGSGSGGGSGGGYGGG----SGSRGGSGGSHGGGSGFG 593
Score = 36.6 bits (83), Expect = 0.016
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
GG +GG GG+ G + GG GGG G RGG G
Sbjct: 548 GGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGG 584
Score = 36.2 bits (82), Expect = 0.021
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 138 CCRSSLSSSRWEAGGGAGGG-----------GGSRG--PAAWDRIRVNGGLGGG-GGCRG 183
C R S + GGG+GGG GGSRG A+ +GG GGG GG G
Sbjct: 61 CGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSG 120
Query: 184 GGDGRG 189
GG G G
Sbjct: 121 GGFGGG 126
Score = 35.4 bits (80), Expect = 0.035
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGD 190
S S +GGG GGG GSRG + +GG G GG GG G G+
Sbjct: 562 SGSGGGSGGGYGGGSGSRGGSGGS----HGGGSGFGGESGGSYGGGE 604
Score = 35.0 bits (79), Expect = 0.046
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 144 SSSRWEAGGGAGG--GGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
S + + GG GG GGGS G GG GG GG GGGDG
Sbjct: 101 SGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDG 146
Score = 34.7 bits (78), Expect = 0.060
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 146 SRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
SR +GG GGGG G +G GG GG GGG G G
Sbjct: 489 SRGGSGGSYGGGGSGGGYGGG-----SGSRGGSGGSYGGGSGSG 527
Score = 34.7 bits (78), Expect = 0.060
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 144 SSSRWEAGGGAGGG--GGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
S S +GGG GGG GG G + +GG GGG GGG G G
Sbjct: 524 SGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGG 571
Score = 33.9 bits (76), Expect = 0.10
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGG--GGGCRGGGDGRGDSELRGA 196
GG GG GGS G + GG GG GGG GGG G G G+
Sbjct: 476 GGRGGSGGSYGRGS------RGGSGGSYGGGGSGGGYGGGSGSRGGS 516
Score = 33.9 bits (76), Expect = 0.10
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 151 GGGAGGG--GGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGA 196
GGG+GGG GGS G + GG G GG GGG G G G+
Sbjct: 535 GGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGS 582
Score = 32.7 bits (73), Expect = 0.23
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
G GG GGS G GG GGG G RGG G
Sbjct: 488 GSRGGSGGSYGGGG-----SGGGYGGGSGSRGGSGG 518
Score = 31.2 bits (69), Expect = 0.66
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 136 GPCCRSSLSSSRWEAGGGAGG--------GGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
G RSS S GGG GG GGGS R+ GG G G GGG G
Sbjct: 25 GGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGS------SRVCGRGGGGSFGYSYGGGSG 78
Query: 188 RGDS 191
G S
Sbjct: 79 GGFS 82
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTS 201
SSS GG GG GG G G GG GG GGG G GD + A +++
Sbjct: 106 SSSGGFGGGFGGGSGGGFGGG------YGSGFGGFGGF-GGGAGGGDGGILTANEKST 156
Score = 29.6 bits (65), Expect = 1.9
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 144 SSSRWEAGGGAGGG-GGSRGPAAWDRIRVNGGLGGG-----GGCRGGGDGRG 189
S + G G+GGG GG G + +GG GGG GG GGG G G
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGG--GHSGGSGGGHSGGSGGNYGGGSGSG 565
>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
Length = 572
Score = 41.2 bits (95), Expect = 6e-04
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 135 DGPCCRSSLSSSRWEAGGGAGGGGG-SRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSEL 193
+GP SS S GGG+ GG S GPA V GG GGGGG G G G +
Sbjct: 12 EGPRPDSSAGGSSAGGGGGSAGGAAPSEGPAVGG---VPGGAGGGGGVVGAGSGEDNRSS 68
Query: 194 RGAAARTSA 202
G A
Sbjct: 69 AGEPGSAGA 77
Score = 32.7 bits (73), Expect = 0.23
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAV 203
GGAGGGGG G + + R + G G G GGD G + + G V
Sbjct: 48 GGAGGGGGVVGAGSGEDNRSSAGEPGSAG--AGGDVNGTAAVGGLVVSAQGV 97
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 123 EDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCR 182
+++E E A P LS R +G G GGGGGS GGGGG
Sbjct: 3 KEQELLEAARTGHLPAVEKLLSGKRLSSGFGGGGGGGSG--------------GGGGGSG 48
Query: 183 GGGDGRGDS 191
GGG G G S
Sbjct: 49 GGGGGLGSS 57
Score = 27.7 bits (60), Expect = 7.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 170 RVNGGLGGGGGCRGGGDGRGDSELRGAAARTS 201
R++ G GGGGG GG G G G +S
Sbjct: 27 RLSSGFGGGGGGGSGGGGGGSGGGGGGLGSSS 58
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 145 SSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSA 202
+S GGG+GGGGG G GG GG G GGG G G ++G SA
Sbjct: 376 ASNSSGGGGSGGGGGGGG---------GGGGGGSGSTGGGGSGAGTYVIQGGYMLGSA 424
Score = 33.9 bits (76), Expect = 0.10
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 16/66 (24%)
Query: 141 SSLSSSRWEAGGGAG---GGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAA 197
S + +S G GA GGGGS G GGGGG GGG G G + G+
Sbjct: 363 SQVVASSTSTGAGASNSSGGGGSGG-------------GGGGGGGGGGGGSGSTGGGGSG 409
Query: 198 ARTSAV 203
A T +
Sbjct: 410 AGTYVI 415
Score = 29.3 bits (64), Expect = 2.5
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAV 203
SS+ AG GGG G GGGGG GGG G S G + + V
Sbjct: 368 SSTSTGAGASNSSGGGGSG-------------GGGGGGGGGGGGGSGSTGGGGSGAGTYV 414
Query: 204 I 204
I
Sbjct: 415 I 415
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/45 (48%), Positives = 23/45 (51%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGA 196
G AGG GG GP +R GG G G RG G GRG RGA
Sbjct: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGA 50
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAAR 199
AGGGA GG R A GG GGGGG RG GRG E G A+
Sbjct: 159 AGGGAERGGSGRSSAGG-----GGGGGGGGGGRGSRRGRGGGERGGPRAQ 203
Score = 34.7 bits (78), Expect = 0.060
Identities = 25/57 (43%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 145 SSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGG--GGCRGGGDGRGDSELRGAAAR 199
S R AGGG GGGGG G + G GGG GG R R S LRG R
Sbjct: 168 SGRSSAGGGGGGGGGGGGRGS------RRGRGGGERGGPRAQAVRRRLSALRGRGRR 218
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 40.0 bits (92), Expect = 0.001
Identities = 48/168 (28%), Positives = 60/168 (35%), Gaps = 29/168 (17%)
Query: 35 PFYGPYLFLSSPNSSYCSHSPGETFWSSVSGPFGLFHSLRRLNSQRGDEDKADEIQNLDN 94
P YG SS + SY S S ++ SG + S G + + Q
Sbjct: 98 PGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQ 157
Query: 95 MEEEKWVSGAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGG-- 152
+ SG G G ++ + +SS+SS GG
Sbjct: 158 QNQYNSSSGGG------GGGGGGGNYGQD----------------QSSMSSGGGSGGGYG 195
Query: 153 --GAGGGGGSRGPAAWDR-IRVNGGLGGGGGCRGGGDGR--GDSELRG 195
GGGGS G DR R GG GGGGG GGG R G E RG
Sbjct: 196 NQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRG 243
Score = 36.2 bits (82), Expect = 0.021
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 146 SRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGG------CRGGGDGRGDSELRGAAAR 199
+++ + G GGGGG G D+ ++ G G GGG GGG G + RG R
Sbjct: 159 NQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGR 218
Score = 35.0 bits (79), Expect = 0.046
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRG 195
GGG GGGGG + R GG GG G GG D G ++ G
Sbjct: 223 GGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGG 267
Score = 30.8 bits (68), Expect = 0.86
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRG---GGDGRGDSELRG 195
GGG G GG RG R GG GGGG G GG G G + G
Sbjct: 378 GGGNGRGGRGRG-GPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGD 186
GG G GGG RG G GGGGG + GD
Sbjct: 398 GGGGSGGGGRGGFP-------SGGGGGGGQQRAGD 425
Score = 27.7 bits (60), Expect = 7.3
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSE 192
SS +E G GG GG G DR GG GG R G R DSE
Sbjct: 235 SSGGYEPRGRGGGRGGRGGMGGSDR----GGFNKFGGPRDQG-SRHDSE 278
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRG 195
SS GG AGG GG+RG +GG GGGGG GG GR L+G
Sbjct: 17 SSGGGYGGGPAGGHGGNRG---------SGGGGGGGGGGRGGRGRHPGHLKG 59
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 148 WEAGGG--AGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
W GG + GGG GPA +GG G GG GGG G
Sbjct: 9 WGRDGGPRSSGGGYGGGPAGG-----HGGNRGSGGGGGGGGG 45
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRG 195
SS GG AGG GG+RG +GG GGGGG GG GR L+G
Sbjct: 17 SSGGGYGGGPAGGHGGNRG---------SGGGGGGGGGGRGGRGRHPGHLKG 59
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 148 WEAGGG--AGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
W GG + GGG GPA +GG G GG GGG G
Sbjct: 9 WGRDGGPRSSGGGYGGGPAGG-----HGGNRGSGGGGGGGGG 45
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 79 QRGDEDKADEIQNLDNMEEEKWVSGA--GRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDG 136
+ GD+ + +E + + EEK G G + + KG R + E EEEE E E+++G
Sbjct: 789 EEGDQGEGEE-EETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEG 847
Query: 137 PCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRG 195
E G G G G G G G G G G+G G+ E G
Sbjct: 848 --------EGEEEEGEGKGEEEGEEGEG-----EEEGEEGEGEGEEEEGEGEGEEEGEG 893
Score = 30.0 bits (66), Expect = 1.5
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 112 KGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRV 171
KG + E EEEE E E +DG WE G G G +
Sbjct: 920 KGEEEGEEGEGEGEEEEGEGEGEDGE-GEGEEEEGEWEGEEEEGEGEGE------EEGEG 972
Query: 172 NGGLGGGGGCRGGGDGRGDSE 192
G G G G G+G G+ E
Sbjct: 973 EGEEGEGEGEEEEGEGEGEEE 993
Score = 28.9 bits (63), Expect = 3.3
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 97 EEKWVSGAGRSLRKR-KGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAG 155
EE+ G G + +G + E+EE E E E+++G E G G G
Sbjct: 922 EEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEG 981
Query: 156 GGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSE 192
G + G G G G G+G + E
Sbjct: 982 EEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEE 1018
Score = 28.1 bits (61), Expect = 5.6
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 80 RGD---EDKADEIQNLDNMEEEKWVSGAGRSLRKRKGT-----RTTSDWAAEDEEEEEEA 131
RGD E+ + ++ + E EK GR +R G +W D EE+E+
Sbjct: 654 RGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQK 713
Query: 132 EQQDGPCCRSSLSSSRWEAGGGAGGGGG 159
E++ G + E GG G G
Sbjct: 714 EREQG---HQKERNQEMEEGGEEEHGEG 738
Score = 28.1 bits (61), Expect = 5.6
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 97 EEKWVSGAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGG 156
EE+ G G + +G + E+E EE E E ++ E G G
Sbjct: 896 EEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEE----------EEGEGEGEDGE 945
Query: 157 GGGSRGPAAWDRIRVNG-GLGGGGGCRGGGDGRGDSE 192
G G W+ G G G G G +G G+ E
Sbjct: 946 GEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGE 982
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
GGG+ GGGGS G + +GG GG GC GG G G
Sbjct: 226 GGGSSGGGGSGGSGCFS----SGGGGGSSGCGGGSSGIG 260
Score = 35.4 bits (80), Expect = 0.035
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDS 191
GG G GGGS G G GGGG GGG G G S
Sbjct: 38 GGGGSGGGSSGSGC--------GYSGGGGYSGGGCGGGSS 69
Score = 35.4 bits (80), Expect = 0.035
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGG---LGGGGGC-RGGGDGRG 189
+GGG GGG G G + ++ +GG GGG GC GG G G
Sbjct: 69 SGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSG 112
Score = 35.0 bits (79), Expect = 0.046
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 133 QQDGPCCRSSLSSSRWEAGGGAG-----------GGGGSRGPAAWDRIRVNGGLG-GGGG 180
Q+ P + + + GGG G GGGGS G ++ +GG G GGG
Sbjct: 4 QKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGG 63
Query: 181 CRGGGDGRG 189
C GG G G
Sbjct: 64 CGGGSSGGG 72
Score = 34.3 bits (77), Expect = 0.078
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 141 SSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
SS S + GGG GGG G + GG GG GGC GG G
Sbjct: 46 SSGSGCGYSGGGGYSGGGCGGGSSG------GGGGGGIGGCGGGSGG 86
Score = 34.3 bits (77), Expect = 0.078
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSAVIFH 206
GG +G GGGS G + I G + GGG GGG G S + G+ + I H
Sbjct: 247 GGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGG---GGSSVGGSGSGKGVPICH 299
Score = 33.5 bits (75), Expect = 0.13
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 136 GPCCRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLG----GGGGCRGGGDG 187
G C S S ++ GGG+ GGG + GG G GGGG GGG G
Sbjct: 78 GGCGGGSGGSVKYSGGGGSSGGGSGCFSSG------GGGSGCFSSGGGGSSGGGSG 127
Score = 33.5 bits (75), Expect = 0.13
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 150 AGGGAG----GGGGSRGPA----AWDRIRVNGGLGGGGGCRGGGDGRG 189
+GGG+G GGGG G A ++ + G GGG GC G G G
Sbjct: 137 SGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGG 184
Score = 31.2 bits (69), Expect = 0.66
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 18/45 (40%)
Query: 151 GGGAG----GGGGSRGPAAWDRIRVNGGLG----GGGGCRGGGDG 187
GGG+G GGGGS G GG G GGGG GGG G
Sbjct: 108 GGGSGCFSSGGGGSSG----------GGSGCFSSGGGGSSGGGSG 142
Score = 31.2 bits (69), Expect = 0.66
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 18/53 (33%)
Query: 145 SSRWEAGGGAG-----GGGGSRGPAAWDRIRVNGGLGGGGGCRGG---GDGRG 189
SS +GGG+G GGGGS V G GGG GC GG G G G
Sbjct: 165 SSGGSSGGGSGCFSSGGGGGS----------VCGYSGGGSGCGGGSSGGSGSG 207
Score = 30.8 bits (68), Expect = 0.86
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 145 SSRWEAGGG------AGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
S + +GGG +GGGG S G + G GGG GC G G
Sbjct: 101 SGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGG 149
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVN-------------------GGLGGGGGCRGGGDGRGD 190
+GGG+G GGGS G + + GG GG GC G G G
Sbjct: 190 SGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGS 249
Query: 191 SELRGAAA 198
S G ++
Sbjct: 250 SGCGGGSS 257
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 141 SSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
S + S +GGG+ GGGS G GGGGG GG G G
Sbjct: 257 SGIGSGCIISGGGSVCGGGSSG-------------GGGGGSSVGGSGSG 292
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDG 187
GG +G G G G + GG GGGG GGG G
Sbjct: 44 GGSSGSGCGYSGGGGYSGGGCGGGSSGGGG--GGGIG 78
Score = 28.5 bits (62), Expect = 4.3
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 18/49 (36%)
Query: 149 EAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGC--RGGGDGRGDSELRG 195
+ GG GGGGGS GGGGC GGG G S G
Sbjct: 18 KTSGGGGGGGGS----------------GGGGCGFFGGGGSGGGSSGSG 50
Score = 28.5 bits (62), Expect = 4.3
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGG-----LGGGGGCRGGGDGRGDS 191
GG GG S G + GG GGG GC GG G S
Sbjct: 162 GGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGS 206
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAA 197
GGG GGGGG G G GGGGG GGG G G L G+A
Sbjct: 150 GGGPGGGGGPGG---------GPGGGGGGGPGGGGGGPGGGLLGGSA 187
Score = 36.6 bits (83), Expect = 0.016
Identities = 18/34 (52%), Positives = 18/34 (52%)
Query: 152 GGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGG 185
GG GG GG GP GG GGGGG GGG
Sbjct: 148 GGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGG 181
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 151 GGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSEL 193
G GAGGGGG+ G + GG GG GG GGG EL
Sbjct: 35 GNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPPEEL 77
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/40 (52%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRG 189
AGGG G GGGS G NG GGG G GGG G G
Sbjct: 38 AGGGGGAGGGSGGG--------NGAGGGGAGGAGGGGGGG 69
Score = 30.8 bits (68), Expect = 0.86
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 16/47 (34%)
Query: 150 AGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGA 196
+GGG G GGG GG GG GGG+G G GA
Sbjct: 32 SGGGNGAGGG----------------GGAGGGSGGGNGAGGGGAGGA 62
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 141 SSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGG 185
S+ S GGG GGGGG G G GGGGG GGG
Sbjct: 795 SAASGGSGAGGGGGGGGGGGSGSGG------GGSTGGGGGTAGGG 833
Score = 36.6 bits (83), Expect = 0.016
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTSA 202
S S G GAGGGGG GG GGG G GGG G G +++A
Sbjct: 793 SGSAASGGSGAGGGGG-------------GGGGGGSGSGGGGSTGGGGGTAGGGTQSTA 838
Score = 29.3 bits (64), Expect = 2.5
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 144 SSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAARTS 201
+++ ++G A GG G+ G GGGG GGG G G G T+
Sbjct: 787 NNANLQSGSAASGGSGAGG--------------GGGGGGGGGSGSGGGGSTGGGGGTA 830
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,602,056
Number of Sequences: 37866
Number of extensions: 619549
Number of successful extensions: 12493
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 6167
Number of HSP's gapped (non-prelim): 3351
length of query: 209
length of database: 18,247,518
effective HSP length: 98
effective length of query: 111
effective length of database: 14,536,650
effective search space: 1613568150
effective search space used: 1613568150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.